AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene005095


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene005095.t1 MTR_1g080370 98.571 560 8 0 1 560 1 560 0.0 1147
MS.gene005095.t1 MTR_1g080410 98.571 560 8 0 1 560 1 560 0.0 1147
MS.gene005095.t1 MTR_5g007860 55.903 576 225 7 5 558 37 605 0.0 667
MS.gene005095.t1 MTR_4g077620 55.185 569 240 8 1 558 3 567 0.0 652
MS.gene005095.t1 MTR_2g062430 47.434 565 265 12 6 558 8 552 1.06e-175 508
MS.gene005095.t1 MTR_2g067640 45.652 552 263 10 20 558 13 540 3.33e-171 496
MS.gene005095.t1 MTR_2g062410 46.196 552 270 10 18 558 50 585 6.32e-169 492
MS.gene005095.t1 MTR_2g062370 45.173 549 272 9 23 558 57 589 2.32e-162 475
MS.gene005095.t1 MTR_4g131710 44.828 551 273 10 23 558 51 585 1.71e-161 473
MS.gene005095.t1 MTR_2g062380 45.810 537 261 9 35 558 40 559 5.19e-156 458
MS.gene005095.t1 MTR_2g062340 44.689 546 243 9 23 558 20 516 2.13e-152 447
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene005095.t1 AT3G04350 64.510 572 186 7 1 560 1 567 0.0 759
MS.gene005095.t1 AT5G18490 64.825 543 174 7 22 560 24 553 0.0 736
MS.gene005095.t1 AT3G04350 65.421 535 171 6 35 560 16 545 0.0 726
MS.gene005095.t1 AT1G04090 54.073 577 243 9 1 560 1 572 0.0 653
MS.gene005095.t1 AT5G43950 53.578 573 242 9 1 558 1 564 0.0 629
MS.gene005095.t1 AT2G44260 45.772 544 267 9 23 558 29 552 1.96e-169 492
MS.gene005095.t1 AT2G44230 45.521 547 262 10 23 558 20 541 2.22e-168 489
MS.gene005095.t1 AT2G44260 45.677 532 261 9 35 558 71 582 6.72e-164 479
MS.gene005095.t1 AT3G01870 41.416 565 291 13 11 558 42 583 1.81e-140 419
MS.gene005095.t1 AT3G01880 40.925 562 292 13 15 558 50 589 3.84e-138 413

Find 139 sgRNAs with CRISPR-Local

Find 173 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTCATCAATGACACTTTA+AGG 0.107306 1.4:-65360141 None:intergenic
TAAACAAGTTTGAGAAAGTT+TGG 0.235719 1.4:+65359192 MS.gene005095:CDS
CTGAGCACAGTGGAGGTAAA+TGG 0.247800 1.4:+65360260 MS.gene005095:CDS
TTATTTCCAACAGAGCTTTC+TGG 0.254169 1.4:+65360634 MS.gene005095:CDS
CACTTAATTACTCGTTAATA+TGG 0.260129 1.4:+65359414 MS.gene005095:CDS
ATTCGATTTGGAGTTTATTA+AGG 0.263278 1.4:+65360291 MS.gene005095:CDS
AGCCAATTGTCCTTCTCCTT+TGG 0.307063 1.4:-65360676 None:intergenic
GCGAACTCCTATTCCAAGTT+TGG 0.314359 1.4:-65360392 None:intergenic
TGTCTTGATGAATAAACTAT+TGG 0.322222 1.4:-65360322 None:intergenic
ACAGAAAACCTAACAAATAT+TGG 0.329471 1.4:-65360595 None:intergenic
GATATAATGATGGTGCGTTT+TGG 0.329648 1.4:+65359966 MS.gene005095:CDS
CATCGAACTTCTTCAACTTT+CGG 0.340671 1.4:-65359536 None:intergenic
TCTTCAACTTTCGGTTCATC+TGG 0.342527 1.4:-65359527 None:intergenic
ATGGGTTAATGCATTCGATT+TGG 0.345620 1.4:+65360279 MS.gene005095:CDS
ATGATGAATGTGTTTACTTT+TGG 0.348745 1.4:+65359450 MS.gene005095:CDS
TCCTTCTCCTTTGGACCAGT+TGG 0.349557 1.4:-65360667 None:intergenic
ACATGCTTCCAATATTTGTT+AGG 0.353415 1.4:+65360587 MS.gene005095:CDS
AATGACACTTTAAGGGTTGC+AGG 0.360391 1.4:-65360133 None:intergenic
CATGCTCTCATTGAGCATTA+CGG 0.360621 1.4:+65359800 MS.gene005095:CDS
GGAACAATCAGCTTGAGATT+TGG 0.364813 1.4:-65359363 None:intergenic
GTTCATCAATGACACTTTAA+GGG 0.377575 1.4:-65360140 None:intergenic
GGATCAGAGTCAAAGAATTC+TGG 0.378539 1.4:-65358577 None:intergenic
TCTGGTGAGGAGGGGCCAAC+TGG 0.379305 1.4:+65360652 MS.gene005095:CDS
ATGCTCTCATTGAGCATTAC+GGG 0.380356 1.4:+65359801 MS.gene005095:CDS
AACTTTCGGTTCATCTGGAT+TGG 0.384698 1.4:-65359522 None:intergenic
TGGAGATGCACAAATTCTAA+TGG 0.385168 1.4:+65359212 MS.gene005095:CDS
CTGTTGGAAATAATTCAAAA+AGG 0.390774 1.4:-65360624 None:intergenic
AGAGGTGAAGGAAGAGAAAA+GGG 0.395917 1.4:-65358604 None:intergenic
AAGAGGTGAAGGAAGAGAAA+AGG 0.400057 1.4:-65358605 None:intergenic
TCATGCAGGGACTTACCTTC+AGG 0.415789 1.4:+65360363 MS.gene005095:CDS
TGTGGTTGGTAAGAGATGTT+TGG 0.416589 1.4:+65358526 None:intergenic
AGGGTTGCAGGTCCATTGAA+TGG 0.426014 1.4:-65360121 None:intergenic
TCCTCGCAACGGCTGATCAT+TGG 0.426252 1.4:-65359312 None:intergenic
GTTCATGTAAAACCAGCATT+AGG 0.426763 1.4:+65360061 MS.gene005095:CDS
CCGACGGCTTTATAACCCTT+TGG 0.428360 1.4:-65359485 None:intergenic
CTTCAGGGATCATCCAAACT+TGG 0.432488 1.4:+65360379 MS.gene005095:CDS
CGGTGAACATGTCGGTGATT+GGG 0.432674 1.4:+65360180 MS.gene005095:CDS
TCGGTGAACATGTCGGTGAT+TGG 0.434338 1.4:+65360179 MS.gene005095:CDS
CATATTAACGAGTAATTAAG+TGG 0.438102 1.4:-65359413 None:intergenic
GCAACTTCACCGGAGAGCTT+TGG 0.443367 1.4:+65360224 MS.gene005095:CDS
TTATAACCCTTTGGAGGGTT+AGG 0.448233 1.4:-65359476 None:intergenic
GGATCATCCAAACTTGGAAT+AGG 0.450282 1.4:+65360385 MS.gene005095:CDS
GATGGCATGTATTTCTCATC+AGG 0.457793 1.4:-65359842 None:intergenic
CCCAAGGGATATTCTTCCAC+CGG 0.460403 1.4:-65359150 None:intergenic
TCCTCACCAGAAAGCTCTGT+TGG 0.461764 1.4:-65360640 None:intergenic
GCATGAATCTGGTTGAGATT+CGG 0.468325 1.4:-65359782 None:intergenic
AATACACAACCTTGCGATAG+AGG 0.468770 1.4:+65359644 MS.gene005095:CDS
CCAAGACAGGAAAATCCATC+TGG 0.469039 1.4:-65359275 None:intergenic
GAGGACACGTTCTTGTCGCT+CGG 0.471944 1.4:+65359330 MS.gene005095:CDS
TGAGCACAGTGGAGGTAAAT+GGG 0.475593 1.4:+65360261 MS.gene005095:CDS
CTTTACTGATATTGCAATGT+GGG 0.475927 1.4:+65360090 MS.gene005095:CDS
GAAGGAAGAGAAAAGGGAAG+TGG 0.478043 1.4:-65358598 None:intergenic
TGCGAGAAATAATCTTAAGA+AGG 0.480833 1.4:+65360012 MS.gene005095:CDS
ACGGCTTTATAACCCTTTGG+AGG 0.486012 1.4:-65359482 None:intergenic
TTTCGGTTCATCTGGATTGG+TGG 0.487936 1.4:-65359519 None:intergenic
ATTGTTGCTGCCGAGTATCT+TGG 0.490221 1.4:+65360466 MS.gene005095:CDS
GCTCAATGAGAGCATGAATC+TGG 0.490735 1.4:-65359793 None:intergenic
GTCCAAAGGAGAAGGACAAT+TGG 0.490950 1.4:+65360674 MS.gene005095:CDS
CTCACAAACTTCTGTTAGAT+CGG 0.493970 1.4:-65359567 None:intergenic
GGGTTGCAGGTCCATTGAAT+GGG 0.500640 1.4:-65360120 None:intergenic
GCCGGTGGAAGAATATCCCT+TGG 0.503378 1.4:+65359149 MS.gene005095:CDS
CTACTTTGATTCTGAACAAG+TGG 0.505519 1.4:+65359712 MS.gene005095:CDS
CGGTGAAGTTGCTCACGCGA+AGG 0.508371 1.4:-65360213 None:intergenic
TTGTTCCGAGTCAGAATCCT+TGG 0.510563 1.4:+65359379 MS.gene005095:CDS
CATGCTAGCTATCCTCATGC+AGG 0.510869 1.4:+65360349 MS.gene005095:CDS
CCTTGTGGCCATTGTGGAAG+AGG 0.512962 1.4:-65358622 None:intergenic
CCACATTGCAATATCAGTAA+AGG 0.513990 1.4:-65360089 None:intergenic
TTGGTTGCCTAACCCTCCAA+AGG 0.523651 1.4:+65359469 MS.gene005095:CDS
AATTCTAATGGAAAGGCACT+AGG 0.529623 1.4:+65359224 MS.gene005095:CDS
CATGCAGGGACTTACCTTCA+GGG 0.530671 1.4:+65360364 MS.gene005095:CDS
AACAGAGCTTTCTGGTGAGG+AGG 0.540070 1.4:+65360642 MS.gene005095:CDS
GTATACTGCGGGTAATGCAA+AGG 0.543009 1.4:+65359901 MS.gene005095:CDS
ACAGAGCTTTCTGGTGAGGA+GGG 0.543440 1.4:+65360643 MS.gene005095:CDS
GTAAAGGCTCCTCCTAATGC+TGG 0.544725 1.4:-65360073 None:intergenic
AGGACACGTTCTTGTCGCTC+GGG 0.549143 1.4:+65359331 MS.gene005095:CDS
CCGGTGGAAGAATATCCCTT+GGG 0.549609 1.4:+65359150 MS.gene005095:CDS
AGACCTTTGGAGATTCCAGA+TGG 0.551683 1.4:+65359260 MS.gene005095:CDS
TTCCTTCACCTCTTCCACAA+TGG 0.552183 1.4:+65358614 MS.gene005095:CDS
GACTCCATCACCAAGATACT+CGG 0.556847 1.4:-65360476 None:intergenic
TTACTCGTTAATATGGTGCA+TGG 0.557123 1.4:+65359421 MS.gene005095:CDS
CGGCTTTATAACCCTTTGGA+GGG 0.557691 1.4:-65359481 None:intergenic
GGTGAAGTTGCTCACGCGAA+GGG 0.560176 1.4:-65360212 None:intergenic
ATTATTTCTCGCATCTTCAT+CGG 0.561997 1.4:-65360002 None:intergenic
CGTGAATCATATACAATGGT+AGG 0.564534 1.4:-65360541 None:intergenic
TCCAACAGAGCTTTCTGGTG+AGG 0.565118 1.4:+65360639 MS.gene005095:CDS
GCGAGAAATAATCTTAAGAA+GGG 0.567421 1.4:+65360013 MS.gene005095:CDS
TTTCTCGCATCTTCATCGGT+AGG 0.570074 1.4:-65359998 None:intergenic
ATGCACAAATTCTAATGGAA+AGG 0.570132 1.4:+65359217 MS.gene005095:CDS
TATACTGCGGGTAATGCAAA+GGG 0.571900 1.4:+65359902 MS.gene005095:CDS
CATGTAAAACCAGCATTAGG+AGG 0.572269 1.4:+65360064 MS.gene005095:CDS
AACATTGAGATGAACAAGAT+CGG 0.572272 1.4:+65360160 MS.gene005095:CDS
TGGTTGCCTAACCCTCCAAA+GGG 0.582899 1.4:+65359470 MS.gene005095:CDS
CTTCGCGTGAGCAACTTCAC+CGG 0.582952 1.4:+65360214 MS.gene005095:CDS
TCCAATGATCAGCCGTTGCG+AGG 0.585934 1.4:+65359311 MS.gene005095:CDS
GCCAACTGGTCCAAAGGAGA+AGG 0.588714 1.4:+65360666 MS.gene005095:CDS
GTGGCAGTAGTAACCAAGAC+AGG 0.592567 1.4:-65359288 None:intergenic
AAGGTTGTGTATTCCAAACC+TGG 0.594362 1.4:-65359634 None:intergenic
AATCCATCTGGAATCTCCAA+AGG 0.594832 1.4:-65359263 None:intergenic
ACATGCCATCATCGGTGTCG+TGG 0.595421 1.4:+65359855 MS.gene005095:CDS
CTCATATATTGCAACCAACA+TGG 0.598495 1.4:-65360508 None:intergenic
AAGAGCCAAGGATTCTGACT+CGG 0.598761 1.4:-65359384 None:intergenic
CCTCTTCCACAATGGCCACA+AGG 0.602749 1.4:+65358622 MS.gene005095:CDS
GGCACAAATTTACCTGGTGG+AGG 0.603301 1.4:+65359944 MS.gene005095:CDS
GGTTGCAATATATGAGAGAG+TGG 0.604682 1.4:+65360515 MS.gene005095:CDS
CATTGAGCATTACGGGCCAA+CGG 0.604760 1.4:+65359808 MS.gene005095:CDS
TGAGAAATACATGCCATCAT+CGG 0.607689 1.4:+65359847 MS.gene005095:CDS
CTAGCTAGAGGTGTATCTGT+CGG 0.607900 1.4:+65359671 MS.gene005095:CDS
TATCACGGCACAAATTTACC+TGG 0.610377 1.4:+65359938 MS.gene005095:CDS
AAGGAGAAGGACAATTGGCT+AGG 0.611868 1.4:+65360679 MS.gene005095:CDS
TAGTTTATTCATCAAGACAT+GGG 0.614112 1.4:+65360326 MS.gene005095:CDS
CCAAAGGGTTATAAAGCCGT+CGG 0.615266 1.4:+65359485 MS.gene005095:CDS
GGAGGGGCCAACTGGTCCAA+AGG 0.615580 1.4:+65360660 MS.gene005095:CDS
CCTGGTGGAGGATATAATGA+TGG 0.615594 1.4:+65359956 MS.gene005095:CDS
TCAGGATGAAAATATACCGT+TGG 0.617396 1.4:-65359824 None:intergenic
GGTGGTAACTACTATGCCGA+CGG 0.618472 1.4:-65359501 None:intergenic
CAAGTTTGGATGATCCCTGA+AGG 0.618933 1.4:-65360378 None:intergenic
GGTAAAGCTATAGATTATCA+CGG 0.619614 1.4:+65359923 MS.gene005095:CDS
CCTTTACTGATATTGCAATG+TGG 0.624376 1.4:+65360089 MS.gene005095:CDS
CACGGCACAAATTTACCTGG+TGG 0.625316 1.4:+65359941 MS.gene005095:CDS
ATAATACCTTGTGGCCATTG+TGG 0.625787 1.4:-65358628 None:intergenic
CCATCATTATATCCTCCACC+AGG 0.627153 1.4:-65359956 None:intergenic
GTTGCAATATATGAGAGAGT+GGG 0.627285 1.4:+65360516 MS.gene005095:CDS
GGCCATTGTGGAAGAGGTGA+AGG 0.627997 1.4:-65358616 None:intergenic
GCTGCCGAGTATCTTGGTGA+TGG 0.635810 1.4:+65360472 MS.gene005095:CDS
GAAGGGAAACATAGAGAGTG+CGG 0.636222 1.4:+65360030 MS.gene005095:CDS
TGAAGGTAAGTCCCTGCATG+AGG 0.636865 1.4:-65360361 None:intergenic
ATAGTTTATTCATCAAGACA+TGG 0.637290 1.4:+65360325 MS.gene005095:CDS
ACAAGAACGTGTCCTCGCAA+CGG 0.637737 1.4:-65359323 None:intergenic
TCTGTCGGAACATTCTTCTG+TGG 0.649136 1.4:+65359686 MS.gene005095:CDS
AACAAGATCGGTGAACATGT+CGG 0.653405 1.4:+65360172 MS.gene005095:CDS
CACTTGTTCAGAATCAAAGT+AGG 0.653816 1.4:-65359711 None:intergenic
AGAACGTGAATCATATACAA+TGG 0.654517 1.4:-65360545 None:intergenic
GCTAGCATACCTCTATCGCA+AGG 0.655324 1.4:-65359653 None:intergenic
ATGCTAGCTATCCTCATGCA+GGG 0.655682 1.4:+65360350 MS.gene005095:CDS
CAGAGCTTTCTGGTGAGGAG+GGG 0.657357 1.4:+65360644 MS.gene005095:CDS
GCAACGGCTGATCATTGGAG+TGG 0.664542 1.4:-65359307 None:intergenic
GAGTCATTACAGAACCATGT+TGG 0.666649 1.4:+65360494 MS.gene005095:CDS
TTGCAATATATGAGAGAGTG+GGG 0.676061 1.4:+65360517 MS.gene005095:CDS
GATAGAGGTATGCTAGCTAG+AGG 0.685865 1.4:+65359659 MS.gene005095:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGAAAAAAATAATAGAAAA+AGG - chr1.4:65358665-65358684 None:intergenic 10.0%
!! AGAAAAAAATAATAGAAAAA+GGG - chr1.4:65358664-65358683 None:intergenic 10.0%
!! AAAAATAATAGAAAAAGGGA+AGG - chr1.4:65358660-65358679 None:intergenic 20.0%
!!! AATACTATTTGATTTCGTTT+TGG + chr1.4:65359028-65359047 MS.gene005095:intron 20.0%
!!! ATATTTGTGCTGTTTTTTAT+TGG + chr1.4:65358818-65358837 MS.gene005095:intron 20.0%
!!! TGCTAAAAGTAATTTTATTC+TGG + chr1.4:65360423-65360442 MS.gene005095:CDS 20.0%
! ACAGAAAACCTAACAAATAT+TGG - chr1.4:65360598-65360617 None:intergenic 25.0%
! ATAGTTTATTCATCAAGACA+TGG + chr1.4:65360325-65360344 MS.gene005095:CDS 25.0%
! CACTTAATTACTCGTTAATA+TGG + chr1.4:65359414-65359433 MS.gene005095:CDS 25.0%
! CATATTAACGAGTAATTAAG+TGG - chr1.4:65359416-65359435 None:intergenic 25.0%
! CTGTTGGAAATAATTCAAAA+AGG - chr1.4:65360627-65360646 None:intergenic 25.0%
! TAAACAAGTTTGAGAAAGTT+TGG + chr1.4:65359192-65359211 MS.gene005095:CDS 25.0%
! TAGTTTATTCATCAAGACAT+GGG + chr1.4:65360326-65360345 MS.gene005095:CDS 25.0%
! TGTCTTGATGAATAAACTAT+TGG - chr1.4:65360325-65360344 None:intergenic 25.0%
!! ATGATGAATGTGTTTACTTT+TGG + chr1.4:65359450-65359469 MS.gene005095:CDS 25.0%
!! GGTATTACTGTGATTAATTT+TGG + chr1.4:65358839-65358858 MS.gene005095:intron 25.0%
!! TTACTGTGTTCTTTCTATTT+TGG + chr1.4:65358748-65358767 MS.gene005095:intron 25.0%
!! TTTCACATTTTATAGACCTT+TGG + chr1.4:65359247-65359266 MS.gene005095:CDS 25.0%
!!! AATATTTGTTAGGTTTTCTG+TGG + chr1.4:65360597-65360616 MS.gene005095:CDS 25.0%
!!! ATTCGATTTGGAGTTTATTA+AGG + chr1.4:65360291-65360310 MS.gene005095:CDS 25.0%
!!! GTAGTATTTTTTGCAGATAT+TGG + chr1.4:65358867-65358886 MS.gene005095:intron 25.0%
!!! TTTGAGTTGATGATTAAAAC+AGG - chr1.4:65358711-65358730 None:intergenic 25.0%
!!! TTTGATTTCGTTTTGGTTAT+TGG + chr1.4:65359035-65359054 MS.gene005095:intron 25.0%
AACATTGAGATGAACAAGAT+CGG + chr1.4:65360160-65360179 MS.gene005095:CDS 30.0%
ACATGCTTCCAATATTTGTT+AGG + chr1.4:65360587-65360606 MS.gene005095:CDS 30.0%
AGAAAAATTCTTTCCAGGTT+TGG + chr1.4:65359621-65359640 MS.gene005095:CDS 30.0%
AGAACGTGAATCATATACAA+TGG - chr1.4:65360548-65360567 None:intergenic 30.0%
ATGCACAAATTCTAATGGAA+AGG + chr1.4:65359217-65359236 MS.gene005095:CDS 30.0%
CTTTACTGATATTGCAATGT+GGG + chr1.4:65360090-65360109 MS.gene005095:CDS 30.0%
GCGAGAAATAATCTTAAGAA+GGG + chr1.4:65360013-65360032 MS.gene005095:CDS 30.0%
GGTAAAGCTATAGATTATCA+CGG + chr1.4:65359923-65359942 MS.gene005095:CDS 30.0%
GTCAAAGAAAAATTCTTTCC+AGG + chr1.4:65359616-65359635 MS.gene005095:CDS 30.0%
GTTCATCAATGACACTTTAA+GGG - chr1.4:65360143-65360162 None:intergenic 30.0%
TGCGAGAAATAATCTTAAGA+AGG + chr1.4:65360012-65360031 MS.gene005095:CDS 30.0%
TGTTCATCAATGACACTTTA+AGG - chr1.4:65360144-65360163 None:intergenic 30.0%
! ATTATTTCTCGCATCTTCAT+CGG - chr1.4:65360005-65360024 None:intergenic 30.0%
!! TGTAACTTGTATTTTCCCAA+GGG - chr1.4:65359168-65359187 None:intergenic 30.0%
!! TTGTAACTTGTATTTTCCCA+AGG - chr1.4:65359169-65359188 None:intergenic 30.0%
CACTTGTTCAGAATCAAAGT+AGG - chr1.4:65359714-65359733 None:intergenic 35.0%
CATCGAACTTCTTCAACTTT+CGG - chr1.4:65359539-65359558 None:intergenic 35.0%
CCACATTGCAATATCAGTAA+AGG - chr1.4:65360092-65360111 None:intergenic 35.0%
CCTTTACTGATATTGCAATG+TGG + chr1.4:65360089-65360108 MS.gene005095:CDS 35.0%
CGTGAATCATATACAATGGT+AGG - chr1.4:65360544-65360563 None:intergenic 35.0%
CTACTTTGATTCTGAACAAG+TGG + chr1.4:65359712-65359731 MS.gene005095:CDS 35.0%
CTCACAAACTTCTGTTAGAT+CGG - chr1.4:65359570-65359589 None:intergenic 35.0%
CTCATATATTGCAACCAACA+TGG - chr1.4:65360511-65360530 None:intergenic 35.0%
GTTCATGTAAAACCAGCATT+AGG + chr1.4:65360061-65360080 MS.gene005095:CDS 35.0%
GTTGCAATATATGAGAGAGT+GGG + chr1.4:65360516-65360535 MS.gene005095:CDS 35.0%
TCAGGATGAAAATATACCGT+TGG - chr1.4:65359827-65359846 None:intergenic 35.0%
TGAGAAATACATGCCATCAT+CGG + chr1.4:65359847-65359866 MS.gene005095:CDS 35.0%
TGGAGATGCACAAATTCTAA+TGG + chr1.4:65359212-65359231 MS.gene005095:CDS 35.0%
TTACTCGTTAATATGGTGCA+TGG + chr1.4:65359421-65359440 MS.gene005095:CDS 35.0%
TTATTTCCAACAGAGCTTTC+TGG + chr1.4:65360634-65360653 MS.gene005095:CDS 35.0%
TTGCAATATATGAGAGAGTG+GGG + chr1.4:65360517-65360536 MS.gene005095:CDS 35.0%
! ATGGGTTAATGCATTCGATT+TGG + chr1.4:65360279-65360298 MS.gene005095:CDS 35.0%
! TGGAGCAATTTTGTATACTG+CGG + chr1.4:65359889-65359908 MS.gene005095:CDS 35.0%
!! AATTCTAATGGAAAGGCACT+AGG + chr1.4:65359224-65359243 MS.gene005095:CDS 35.0%
!! AGGTTGATGATAATACCTTG+TGG - chr1.4:65358640-65358659 None:intergenic 35.0%
!! GATATAATGATGGTGCGTTT+TGG + chr1.4:65359966-65359985 MS.gene005095:CDS 35.0%
!!! TGGTTTTGAGTGTTCTTGTT+GGG + chr1.4:65358546-65358565 MS.gene005095:CDS 35.0%
!!! TTGGTTTTGAGTGTTCTTGT+TGG + chr1.4:65358545-65358564 MS.gene005095:CDS 35.0%
AAAAACAGACCAAAGCTCTC+CGG - chr1.4:65360236-65360255 None:intergenic 40.0%
AACAAGATCGGTGAACATGT+CGG + chr1.4:65360172-65360191 MS.gene005095:CDS 40.0%
AACTTTCGGTTCATCTGGAT+TGG - chr1.4:65359525-65359544 None:intergenic 40.0%
AAGAGGTGAAGGAAGAGAAA+AGG - chr1.4:65358608-65358627 None:intergenic 40.0%
AAGGTTGTGTATTCCAAACC+TGG - chr1.4:65359637-65359656 None:intergenic 40.0%
AATACACAACCTTGCGATAG+AGG + chr1.4:65359644-65359663 MS.gene005095:CDS 40.0%
AGAGGTGAAGGAAGAGAAAA+GGG - chr1.4:65358607-65358626 None:intergenic 40.0%
ATAATACCTTGTGGCCATTG+TGG - chr1.4:65358631-65358650 None:intergenic 40.0%
ATGCTCTCATTGAGCATTAC+GGG + chr1.4:65359801-65359820 MS.gene005095:CDS 40.0%
CATGCTCTCATTGAGCATTA+CGG + chr1.4:65359800-65359819 MS.gene005095:CDS 40.0%
CATGTAAAACCAGCATTAGG+AGG + chr1.4:65360064-65360083 MS.gene005095:CDS 40.0%
GAGTCATTACAGAACCATGT+TGG + chr1.4:65360494-65360513 MS.gene005095:CDS 40.0%
GATGGCATGTATTTCTCATC+AGG - chr1.4:65359845-65359864 None:intergenic 40.0%
GCATGAATCTGGTTGAGATT+CGG - chr1.4:65359785-65359804 None:intergenic 40.0%
GGAACAATCAGCTTGAGATT+TGG - chr1.4:65359366-65359385 None:intergenic 40.0%
GGATCAGAGTCAAAGAATTC+TGG - chr1.4:65358580-65358599 None:intergenic 40.0%
GGATCATCCAAACTTGGAAT+AGG + chr1.4:65360385-65360404 MS.gene005095:CDS 40.0%
GGTTGCAATATATGAGAGAG+TGG + chr1.4:65360515-65360534 MS.gene005095:CDS 40.0%
TATACTGCGGGTAATGCAAA+GGG + chr1.4:65359902-65359921 MS.gene005095:CDS 40.0%
TATCACGGCACAAATTTACC+TGG + chr1.4:65359938-65359957 MS.gene005095:CDS 40.0%
TCTTCAACTTTCGGTTCATC+TGG - chr1.4:65359530-65359549 None:intergenic 40.0%
! AATCCATCTGGAATCTCCAA+AGG - chr1.4:65359266-65359285 None:intergenic 40.0%
! AATGACACTTTAAGGGTTGC+AGG - chr1.4:65360136-65360155 None:intergenic 40.0%
! GGAGCAATTTTGTATACTGC+GGG + chr1.4:65359890-65359909 MS.gene005095:CDS 40.0%
! TTATAACCCTTTGGAGGGTT+AGG - chr1.4:65359479-65359498 None:intergenic 40.0%
!! AAGTGGCTTTTTAAGAGCCA+AGG - chr1.4:65359399-65359418 None:intergenic 40.0%
!!! GTGTCGTGGTTTTTCAAGAA+TGG + chr1.4:65359869-65359888 MS.gene005095:CDS 40.0%
!!! GTTTTTTTCTCTGAGCACAG+TGG + chr1.4:65360250-65360269 MS.gene005095:CDS 40.0%
!!! TGGGTTTTTTGCCCATTCAA+TGG + chr1.4:65360109-65360128 MS.gene005095:CDS 40.0%
AAAAACCACGACACCGATGA+TGG - chr1.4:65359863-65359882 None:intergenic 45.0%
AAGAGCCAAGGATTCTGACT+CGG - chr1.4:65359387-65359406 None:intergenic 45.0%
AAGGAGAAGGACAATTGGCT+AGG + chr1.4:65360679-65360698 MS.gene005095:CDS 45.0%
AGCCAATTGTCCTTCTCCTT+TGG - chr1.4:65360679-65360698 None:intergenic 45.0%
AGCTTGTGAGTGATCTACTC+AGG + chr1.4:65359116-65359135 MS.gene005095:intron 45.0%
ATGCTAGCTATCCTCATGCA+GGG + chr1.4:65360350-65360369 MS.gene005095:CDS 45.0%
ATTGTTGCTGCCGAGTATCT+TGG + chr1.4:65360466-65360485 MS.gene005095:CDS 45.0%
CAAGTTTGGATGATCCCTGA+AGG - chr1.4:65360381-65360400 None:intergenic 45.0%
CCAAAGGGTTATAAAGCCGT+CGG + chr1.4:65359485-65359504 MS.gene005095:CDS 45.0%
CCAAGACAGGAAAATCCATC+TGG - chr1.4:65359278-65359297 None:intergenic 45.0%
CCATCATTATATCCTCCACC+AGG - chr1.4:65359959-65359978 None:intergenic 45.0%
CCTGGTGGAGGATATAATGA+TGG + chr1.4:65359956-65359975 MS.gene005095:CDS 45.0%
CTTCAGGGATCATCCAAACT+TGG + chr1.4:65360379-65360398 MS.gene005095:CDS 45.0%
GAAGGAAGAGAAAAGGGAAG+TGG - chr1.4:65358601-65358620 None:intergenic 45.0%
GAAGGGAAACATAGAGAGTG+CGG + chr1.4:65360030-65360049 MS.gene005095:CDS 45.0%
GACTCCATCACCAAGATACT+CGG - chr1.4:65360479-65360498 None:intergenic 45.0%
GCGAACTCCTATTCCAAGTT+TGG - chr1.4:65360395-65360414 None:intergenic 45.0%
GTATACTGCGGGTAATGCAA+AGG + chr1.4:65359901-65359920 MS.gene005095:CDS 45.0%
GTCCAAAGGAGAAGGACAAT+TGG + chr1.4:65360674-65360693 MS.gene005095:CDS 45.0%
TCTGTCGGAACATTCTTCTG+TGG + chr1.4:65359686-65359705 MS.gene005095:CDS 45.0%
TGAGCACAGTGGAGGTAAAT+GGG + chr1.4:65360261-65360280 MS.gene005095:CDS 45.0%
TTCCTTCACCTCTTCCACAA+TGG + chr1.4:65358614-65358633 MS.gene005095:CDS 45.0%
TTGTGAGTGATCTACTCAGG+TGG + chr1.4:65359119-65359138 MS.gene005095:intron 45.0%
TTGTTCCGAGTCAGAATCCT+TGG + chr1.4:65359379-65359398 MS.gene005095:CDS 45.0%
TTTCTCGCATCTTCATCGGT+AGG - chr1.4:65360001-65360020 None:intergenic 45.0%
! ACGGCTTTATAACCCTTTGG+AGG - chr1.4:65359485-65359504 None:intergenic 45.0%
! AGACCTTTGGAGATTCCAGA+TGG + chr1.4:65359260-65359279 MS.gene005095:CDS 45.0%
! CGGCTTTATAACCCTTTGGA+GGG - chr1.4:65359484-65359503 None:intergenic 45.0%
! CTAGCTAGAGGTGTATCTGT+CGG + chr1.4:65359671-65359690 MS.gene005095:CDS 45.0%
! GATAGAGGTATGCTAGCTAG+AGG + chr1.4:65359659-65359678 MS.gene005095:CDS 45.0%
! GCTCAATGAGAGCATGAATC+TGG - chr1.4:65359796-65359815 None:intergenic 45.0%
! TTTCGGTTCATCTGGATTGG+TGG - chr1.4:65359522-65359541 None:intergenic 45.0%
! TTTTTCTCTGAGCACAGTGG+AGG + chr1.4:65360253-65360272 MS.gene005095:CDS 45.0%
!! CCAGATGGATTTTCCTGTCT+TGG + chr1.4:65359275-65359294 MS.gene005095:CDS 45.0%
ACAAGAACGTGTCCTCGCAA+CGG - chr1.4:65359326-65359345 None:intergenic 50.0%
AGGGTTGCAGGTCCATTGAA+TGG - chr1.4:65360124-65360143 None:intergenic 50.0%
CACGGCACAAATTTACCTGG+TGG + chr1.4:65359941-65359960 MS.gene005095:CDS 50.0%
CATGCAGGGACTTACCTTCA+GGG + chr1.4:65360364-65360383 MS.gene005095:CDS 50.0%
CATGCTAGCTATCCTCATGC+AGG + chr1.4:65360349-65360368 MS.gene005095:CDS 50.0%
CATTGAGCATTACGGGCCAA+CGG + chr1.4:65359808-65359827 MS.gene005095:CDS 50.0%
CCCAAGGGATATTCTTCCAC+CGG - chr1.4:65359153-65359172 None:intergenic 50.0%
CCGGTGGAAGAATATCCCTT+GGG + chr1.4:65359150-65359169 MS.gene005095:CDS 50.0%
CGGTGAACATGTCGGTGATT+GGG + chr1.4:65360180-65360199 MS.gene005095:CDS 50.0%
CTGAGCACAGTGGAGGTAAA+TGG + chr1.4:65360260-65360279 MS.gene005095:CDS 50.0%
GCTAGCATACCTCTATCGCA+AGG - chr1.4:65359656-65359675 None:intergenic 50.0%
GGCACAAATTTACCTGGTGG+AGG + chr1.4:65359944-65359963 MS.gene005095:CDS 50.0%
GGGTTGCAGGTCCATTGAAT+GGG - chr1.4:65360123-65360142 None:intergenic 50.0%
GGTGGTAACTACTATGCCGA+CGG - chr1.4:65359504-65359523 None:intergenic 50.0%
GTAAAGGCTCCTCCTAATGC+TGG - chr1.4:65360076-65360095 None:intergenic 50.0%
GTGGCAGTAGTAACCAAGAC+AGG - chr1.4:65359291-65359310 None:intergenic 50.0%
TCATGCAGGGACTTACCTTC+AGG + chr1.4:65360363-65360382 MS.gene005095:CDS 50.0%
TCCTCACCAGAAAGCTCTGT+TGG - chr1.4:65360643-65360662 None:intergenic 50.0%
TCCTTCTCCTTTGGACCAGT+TGG - chr1.4:65360670-65360689 None:intergenic 50.0%
TCGGTGAACATGTCGGTGAT+TGG + chr1.4:65360179-65360198 MS.gene005095:CDS 50.0%
TGAAGGTAAGTCCCTGCATG+AGG - chr1.4:65360364-65360383 None:intergenic 50.0%
TGAGTGATCTACTCAGGTGG+TGG + chr1.4:65359122-65359141 MS.gene005095:intron 50.0%
TGGTTGCCTAACCCTCCAAA+GGG + chr1.4:65359470-65359489 MS.gene005095:CDS 50.0%
TTGGTTGCCTAACCCTCCAA+AGG + chr1.4:65359469-65359488 MS.gene005095:CDS 50.0%
! AACAGAGCTTTCTGGTGAGG+AGG + chr1.4:65360642-65360661 MS.gene005095:CDS 50.0%
! ACAGAGCTTTCTGGTGAGGA+GGG + chr1.4:65360643-65360662 MS.gene005095:CDS 50.0%
! CCGACGGCTTTATAACCCTT+TGG - chr1.4:65359488-65359507 None:intergenic 50.0%
! TCCAACAGAGCTTTCTGGTG+AGG + chr1.4:65360639-65360658 MS.gene005095:CDS 50.0%
!! TACTCAGGTGGTGGTTTTGC+CGG + chr1.4:65359131-65359150 MS.gene005095:intron 50.0%
AGGACACGTTCTTGTCGCTC+GGG + chr1.4:65359331-65359350 MS.gene005095:CDS 55.0%
CCTCTTCCACAATGGCCACA+AGG + chr1.4:65358622-65358641 MS.gene005095:CDS 55.0%
CCTTGTGGCCATTGTGGAAG+AGG - chr1.4:65358625-65358644 None:intergenic 55.0%
CTTCGCGTGAGCAACTTCAC+CGG + chr1.4:65360214-65360233 MS.gene005095:CDS 55.0%
GAGGACACGTTCTTGTCGCT+CGG + chr1.4:65359330-65359349 MS.gene005095:CDS 55.0%
GCAACGGCTGATCATTGGAG+TGG - chr1.4:65359310-65359329 None:intergenic 55.0%
GCAACTTCACCGGAGAGCTT+TGG + chr1.4:65360224-65360243 MS.gene005095:CDS 55.0%
GCCAACTGGTCCAAAGGAGA+AGG + chr1.4:65360666-65360685 MS.gene005095:CDS 55.0%
GCCGGTGGAAGAATATCCCT+TGG + chr1.4:65359149-65359168 MS.gene005095:CDS 55.0%
GCTGCCGAGTATCTTGGTGA+TGG + chr1.4:65360472-65360491 MS.gene005095:CDS 55.0%
GGCCATTGTGGAAGAGGTGA+AGG - chr1.4:65358619-65358638 None:intergenic 55.0%
GGTGAAGTTGCTCACGCGAA+GGG - chr1.4:65360215-65360234 None:intergenic 55.0%
TCCAATGATCAGCCGTTGCG+AGG + chr1.4:65359311-65359330 MS.gene005095:CDS 55.0%
TCCTCGCAACGGCTGATCAT+TGG - chr1.4:65359315-65359334 None:intergenic 55.0%
! CAGAGCTTTCTGGTGAGGAG+GGG + chr1.4:65360644-65360663 MS.gene005095:CDS 55.0%
!! ACATGCCATCATCGGTGTCG+TGG + chr1.4:65359855-65359874 MS.gene005095:CDS 55.0%
CGGTGAAGTTGCTCACGCGA+AGG - chr1.4:65360216-65360235 None:intergenic 60.0%
!! TCAGGTGGTGGTTTTGCCGG+TGG + chr1.4:65359134-65359153 MS.gene005095:intron 60.0%
GGAGGGGCCAACTGGTCCAA+AGG + chr1.4:65360660-65360679 MS.gene005095:CDS 65.0%
TCTGGTGAGGAGGGGCCAAC+TGG + chr1.4:65360652-65360671 MS.gene005095:CDS 65.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 65358541 65360717 65358541 ID=MS.gene005095
chr1.4 mRNA 65358541 65360717 65358541 ID=MS.gene005095.t1;Parent=MS.gene005095
chr1.4 exon 65358541 65358643 65358541 ID=MS.gene005095.t1.exon1;Parent=MS.gene005095.t1
chr1.4 CDS 65358541 65358643 65358541 ID=cds.MS.gene005095.t1;Parent=MS.gene005095.t1
chr1.4 exon 65359138 65360717 65359138 ID=MS.gene005095.t1.exon2;Parent=MS.gene005095.t1
chr1.4 CDS 65359138 65360717 65359138 ID=cds.MS.gene005095.t1;Parent=MS.gene005095.t1
Gene Sequence

>MS.gene005095

ATGTTTGGTTTTGAGTGTTCTTGTTGGGATAGTTTGCCAGAATTCTTTGACTCTGATCCACTTCCCTTTTCTCTTCCTTCACCTCTTCCACAATGGCCACAAGGTATTATCATCAACCTTCCCTTTTTCTATTATTTTTTTCTTCTTTCTAATTAAAGCAACATATTCCTGTTTTAATCATCAACTCAAACTAGACAGACACTTTTATTACTGTGTTCTTTCTATTTTGGACAGATTATTCAATCATAATTTGTTTTTGTTTTTTTTTTTTTTTTTTATATTTGTGCTGTTTTTTATTGGTATTACTGTGATTAATTTTGGAAATTGTAGTATTTTTTGCAGATATTGGTTTTACTTAATTTTCAAGCTTACTTCTTGATTTTGTTTCATATTGATGCATTAAATAAGTATCTTTATTGCATATTTTGCTATGTCAATGTTTTACAAAGTTCTCGCTACATATATCAAAATTGAATTTTTTACTATGAATACTATTTGATTTCGTTTTGGTTATTGGCTATGTATAATGTCGAATGTTTGTGACTTAAATTATCTTATTTATAAACTAAGTTCTAAGCTTGTGAGTGATCTACTCAGGTGGTGGTTTTGCCGGTGGAAGAATATCCCTTGGGAAAATACAAGTTACAAAAGTAAACAAGTTTGAGAAAGTTTGGAGATGCACAAATTCTAATGGAAAGGCACTAGGTTTCACATTTTATAGACCTTTGGAGATTCCAGATGGATTTTCCTGTCTTGGTTACTACTGCCACTCCAATGATCAGCCGTTGCGAGGACACGTTCTTGTCGCTCGGGAGTTTACTTCCAAATCTCAAGCTGATTGTTCCGAGTCAGAATCCTTGGCTCTTAAAAAGCCACTTAATTACTCGTTAATATGGTGCATGGACTCACATGATGAATGTGTTTACTTTTGGTTGCCTAACCCTCCAAAGGGTTATAAAGCCGTCGGCATAGTAGTTACCACCAATCCAGATGAACCGAAAGTTGAAGAAGTTCGATGCGTGCGAACCGATCTAACAGAAGTTTGTGAGACATCTGATCTCTTACTAACAATAAAGTCAAAGAAAAATTCTTTCCAGGTTTGGAATACACAACCTTGCGATAGAGGTATGCTAGCTAGAGGTGTATCTGTCGGAACATTCTTCTGTGGCACCTACTTTGATTCTGAACAAGTGGTTGATGTTGTGTGTTTGAAGAATCTTGATTCTTCGTTGCACGCAATGCCGAATCTCAACCAGATTCATGCTCTCATTGAGCATTACGGGCCAACGGTATATTTTCATCCTGATGAGAAATACATGCCATCATCGGTGTCGTGGTTTTTCAAGAATGGAGCAATTTTGTATACTGCGGGTAATGCAAAGGGTAAAGCTATAGATTATCACGGCACAAATTTACCTGGTGGAGGATATAATGATGGTGCGTTTTGGATTGATTTGCCTACCGATGAAGATGCGAGAAATAATCTTAAGAAGGGAAACATAGAGAGTGCGGAACTCTATGTTCATGTAAAACCAGCATTAGGAGGAGCCTTTACTGATATTGCAATGTGGGTTTTTTGCCCATTCAATGGACCTGCAACCCTTAAAGTGTCATTGATGAACATTGAGATGAACAAGATCGGTGAACATGTCGGTGATTGGGAGCACTTCACCCTTCGCGTGAGCAACTTCACCGGAGAGCTTTGGTCTGTTTTTTTCTCTGAGCACAGTGGAGGTAAATGGGTTAATGCATTCGATTTGGAGTTTATTAAGGAGAATAAACCAATAGTTTATTCATCAAGACATGGGCATGCTAGCTATCCTCATGCAGGGACTTACCTTCAGGGATCATCCAAACTTGGAATAGGAGTTCGCAACGATGCTGCTAAAAGTAATTTTATTCTGGATTCGAGCTTTAGATACAAGATTGTTGCTGCCGAGTATCTTGGTGATGGAGTCATTACAGAACCATGTTGGTTGCAATATATGAGAGAGTGGGGTCCTACCATTGTATATGATTCACGTTCTGAAATAGAGAAGATAATAGACATGCTTCCAATATTTGTTAGGTTTTCTGTGGAGAACCTTTTTGAATTATTTCCAACAGAGCTTTCTGGTGAGGAGGGGCCAACTGGTCCAAAGGAGAAGGACAATTGGCTAGGTGATGAATATTGCTAG

Protein sequence

>MS.gene005095.t1

MFGFECSCWDSLPEFFDSDPLPFSLPSPLPQWPQGGGFAGGRISLGKIQVTKVNKFEKVWRCTNSNGKALGFTFYRPLEIPDGFSCLGYYCHSNDQPLRGHVLVAREFTSKSQADCSESESLALKKPLNYSLIWCMDSHDECVYFWLPNPPKGYKAVGIVVTTNPDEPKVEEVRCVRTDLTEVCETSDLLLTIKSKKNSFQVWNTQPCDRGMLARGVSVGTFFCGTYFDSEQVVDVVCLKNLDSSLHAMPNLNQIHALIEHYGPTVYFHPDEKYMPSSVSWFFKNGAILYTAGNAKGKAIDYHGTNLPGGGYNDGAFWIDLPTDEDARNNLKKGNIESAELYVHVKPALGGAFTDIAMWVFCPFNGPATLKVSLMNIEMNKIGEHVGDWEHFTLRVSNFTGELWSVFFSEHSGGKWVNAFDLEFIKENKPIVYSSRHGHASYPHAGTYLQGSSKLGIGVRNDAAKSNFILDSSFRYKIVAAEYLGDGVITEPCWLQYMREWGPTIVYDSRSEIEKIIDMLPIFVRFSVENLFELFPTELSGEEGPTGPKEKDNWLGDEYC