Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene005095.t1 | XP_003590981.1 | 98.4 | 560 | 9 | 0 | 1 | 560 | 1 | 560 | 1.20E-304 | 1055 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene005095.t1 | G7I6T7 | 98.4 | 560 | 9 | 0 | 1 | 560 | 1 | 560 | 8.5e-305 | 1055.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene042258 | MS.gene005095 | PPI |
MS.gene005095 | MS.gene043859 | PPI |
MS.gene005095 | MS.gene60881 | PPI |
MS.gene005095 | MS.gene000193 | PPI |
MS.gene005095 | MS.gene60889 | PPI |
MS.gene012606 | MS.gene005095 | PPI |
MS.gene061203 | MS.gene005095 | PPI |
MS.gene005095 | MS.gene000192 | PPI |
MS.gene005095 | MS.gene60887 | PPI |
MS.gene043858 | MS.gene005095 | PPI |
MS.gene005095 | MS.gene000190 | PPI |
MS.gene60886 | MS.gene005095 | PPI |
MS.gene005095 | MS.gene33537 | PPI |
MS.gene043855 | MS.gene005095 | PPI |
MS.gene60884 | MS.gene005095 | PPI |
MS.gene005095 | MS.gene60888 | PPI |
MS.gene000191 | MS.gene005095 | PPI |
MS.gene005095 | MS.gene042257 | PPI |
MS.gene60883 | MS.gene005095 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene005095.t1 | MTR_1g080370 | 98.571 | 560 | 8 | 0 | 1 | 560 | 1 | 560 | 0.0 | 1147 |
MS.gene005095.t1 | MTR_1g080410 | 98.571 | 560 | 8 | 0 | 1 | 560 | 1 | 560 | 0.0 | 1147 |
MS.gene005095.t1 | MTR_5g007860 | 55.903 | 576 | 225 | 7 | 5 | 558 | 37 | 605 | 0.0 | 667 |
MS.gene005095.t1 | MTR_4g077620 | 55.185 | 569 | 240 | 8 | 1 | 558 | 3 | 567 | 0.0 | 652 |
MS.gene005095.t1 | MTR_2g062430 | 47.434 | 565 | 265 | 12 | 6 | 558 | 8 | 552 | 1.06e-175 | 508 |
MS.gene005095.t1 | MTR_2g067640 | 45.652 | 552 | 263 | 10 | 20 | 558 | 13 | 540 | 3.33e-171 | 496 |
MS.gene005095.t1 | MTR_2g062410 | 46.196 | 552 | 270 | 10 | 18 | 558 | 50 | 585 | 6.32e-169 | 492 |
MS.gene005095.t1 | MTR_2g062370 | 45.173 | 549 | 272 | 9 | 23 | 558 | 57 | 589 | 2.32e-162 | 475 |
MS.gene005095.t1 | MTR_4g131710 | 44.828 | 551 | 273 | 10 | 23 | 558 | 51 | 585 | 1.71e-161 | 473 |
MS.gene005095.t1 | MTR_2g062380 | 45.810 | 537 | 261 | 9 | 35 | 558 | 40 | 559 | 5.19e-156 | 458 |
MS.gene005095.t1 | MTR_2g062340 | 44.689 | 546 | 243 | 9 | 23 | 558 | 20 | 516 | 2.13e-152 | 447 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene005095.t1 | AT3G04350 | 64.510 | 572 | 186 | 7 | 1 | 560 | 1 | 567 | 0.0 | 759 |
MS.gene005095.t1 | AT5G18490 | 64.825 | 543 | 174 | 7 | 22 | 560 | 24 | 553 | 0.0 | 736 |
MS.gene005095.t1 | AT3G04350 | 65.421 | 535 | 171 | 6 | 35 | 560 | 16 | 545 | 0.0 | 726 |
MS.gene005095.t1 | AT1G04090 | 54.073 | 577 | 243 | 9 | 1 | 560 | 1 | 572 | 0.0 | 653 |
MS.gene005095.t1 | AT5G43950 | 53.578 | 573 | 242 | 9 | 1 | 558 | 1 | 564 | 0.0 | 629 |
MS.gene005095.t1 | AT2G44260 | 45.772 | 544 | 267 | 9 | 23 | 558 | 29 | 552 | 1.96e-169 | 492 |
MS.gene005095.t1 | AT2G44230 | 45.521 | 547 | 262 | 10 | 23 | 558 | 20 | 541 | 2.22e-168 | 489 |
MS.gene005095.t1 | AT2G44260 | 45.677 | 532 | 261 | 9 | 35 | 558 | 71 | 582 | 6.72e-164 | 479 |
MS.gene005095.t1 | AT3G01870 | 41.416 | 565 | 291 | 13 | 11 | 558 | 42 | 583 | 1.81e-140 | 419 |
MS.gene005095.t1 | AT3G01880 | 40.925 | 562 | 292 | 13 | 15 | 558 | 50 | 589 | 3.84e-138 | 413 |
Find 139 sgRNAs with CRISPR-Local
Find 173 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGTTCATCAATGACACTTTA+AGG | 0.107306 | 1.4:-65360141 | None:intergenic |
TAAACAAGTTTGAGAAAGTT+TGG | 0.235719 | 1.4:+65359192 | MS.gene005095:CDS |
CTGAGCACAGTGGAGGTAAA+TGG | 0.247800 | 1.4:+65360260 | MS.gene005095:CDS |
TTATTTCCAACAGAGCTTTC+TGG | 0.254169 | 1.4:+65360634 | MS.gene005095:CDS |
CACTTAATTACTCGTTAATA+TGG | 0.260129 | 1.4:+65359414 | MS.gene005095:CDS |
ATTCGATTTGGAGTTTATTA+AGG | 0.263278 | 1.4:+65360291 | MS.gene005095:CDS |
AGCCAATTGTCCTTCTCCTT+TGG | 0.307063 | 1.4:-65360676 | None:intergenic |
GCGAACTCCTATTCCAAGTT+TGG | 0.314359 | 1.4:-65360392 | None:intergenic |
TGTCTTGATGAATAAACTAT+TGG | 0.322222 | 1.4:-65360322 | None:intergenic |
ACAGAAAACCTAACAAATAT+TGG | 0.329471 | 1.4:-65360595 | None:intergenic |
GATATAATGATGGTGCGTTT+TGG | 0.329648 | 1.4:+65359966 | MS.gene005095:CDS |
CATCGAACTTCTTCAACTTT+CGG | 0.340671 | 1.4:-65359536 | None:intergenic |
TCTTCAACTTTCGGTTCATC+TGG | 0.342527 | 1.4:-65359527 | None:intergenic |
ATGGGTTAATGCATTCGATT+TGG | 0.345620 | 1.4:+65360279 | MS.gene005095:CDS |
ATGATGAATGTGTTTACTTT+TGG | 0.348745 | 1.4:+65359450 | MS.gene005095:CDS |
TCCTTCTCCTTTGGACCAGT+TGG | 0.349557 | 1.4:-65360667 | None:intergenic |
ACATGCTTCCAATATTTGTT+AGG | 0.353415 | 1.4:+65360587 | MS.gene005095:CDS |
AATGACACTTTAAGGGTTGC+AGG | 0.360391 | 1.4:-65360133 | None:intergenic |
CATGCTCTCATTGAGCATTA+CGG | 0.360621 | 1.4:+65359800 | MS.gene005095:CDS |
GGAACAATCAGCTTGAGATT+TGG | 0.364813 | 1.4:-65359363 | None:intergenic |
GTTCATCAATGACACTTTAA+GGG | 0.377575 | 1.4:-65360140 | None:intergenic |
GGATCAGAGTCAAAGAATTC+TGG | 0.378539 | 1.4:-65358577 | None:intergenic |
TCTGGTGAGGAGGGGCCAAC+TGG | 0.379305 | 1.4:+65360652 | MS.gene005095:CDS |
ATGCTCTCATTGAGCATTAC+GGG | 0.380356 | 1.4:+65359801 | MS.gene005095:CDS |
AACTTTCGGTTCATCTGGAT+TGG | 0.384698 | 1.4:-65359522 | None:intergenic |
TGGAGATGCACAAATTCTAA+TGG | 0.385168 | 1.4:+65359212 | MS.gene005095:CDS |
CTGTTGGAAATAATTCAAAA+AGG | 0.390774 | 1.4:-65360624 | None:intergenic |
AGAGGTGAAGGAAGAGAAAA+GGG | 0.395917 | 1.4:-65358604 | None:intergenic |
AAGAGGTGAAGGAAGAGAAA+AGG | 0.400057 | 1.4:-65358605 | None:intergenic |
TCATGCAGGGACTTACCTTC+AGG | 0.415789 | 1.4:+65360363 | MS.gene005095:CDS |
TGTGGTTGGTAAGAGATGTT+TGG | 0.416589 | 1.4:+65358526 | None:intergenic |
AGGGTTGCAGGTCCATTGAA+TGG | 0.426014 | 1.4:-65360121 | None:intergenic |
TCCTCGCAACGGCTGATCAT+TGG | 0.426252 | 1.4:-65359312 | None:intergenic |
GTTCATGTAAAACCAGCATT+AGG | 0.426763 | 1.4:+65360061 | MS.gene005095:CDS |
CCGACGGCTTTATAACCCTT+TGG | 0.428360 | 1.4:-65359485 | None:intergenic |
CTTCAGGGATCATCCAAACT+TGG | 0.432488 | 1.4:+65360379 | MS.gene005095:CDS |
CGGTGAACATGTCGGTGATT+GGG | 0.432674 | 1.4:+65360180 | MS.gene005095:CDS |
TCGGTGAACATGTCGGTGAT+TGG | 0.434338 | 1.4:+65360179 | MS.gene005095:CDS |
CATATTAACGAGTAATTAAG+TGG | 0.438102 | 1.4:-65359413 | None:intergenic |
GCAACTTCACCGGAGAGCTT+TGG | 0.443367 | 1.4:+65360224 | MS.gene005095:CDS |
TTATAACCCTTTGGAGGGTT+AGG | 0.448233 | 1.4:-65359476 | None:intergenic |
GGATCATCCAAACTTGGAAT+AGG | 0.450282 | 1.4:+65360385 | MS.gene005095:CDS |
GATGGCATGTATTTCTCATC+AGG | 0.457793 | 1.4:-65359842 | None:intergenic |
CCCAAGGGATATTCTTCCAC+CGG | 0.460403 | 1.4:-65359150 | None:intergenic |
TCCTCACCAGAAAGCTCTGT+TGG | 0.461764 | 1.4:-65360640 | None:intergenic |
GCATGAATCTGGTTGAGATT+CGG | 0.468325 | 1.4:-65359782 | None:intergenic |
AATACACAACCTTGCGATAG+AGG | 0.468770 | 1.4:+65359644 | MS.gene005095:CDS |
CCAAGACAGGAAAATCCATC+TGG | 0.469039 | 1.4:-65359275 | None:intergenic |
GAGGACACGTTCTTGTCGCT+CGG | 0.471944 | 1.4:+65359330 | MS.gene005095:CDS |
TGAGCACAGTGGAGGTAAAT+GGG | 0.475593 | 1.4:+65360261 | MS.gene005095:CDS |
CTTTACTGATATTGCAATGT+GGG | 0.475927 | 1.4:+65360090 | MS.gene005095:CDS |
GAAGGAAGAGAAAAGGGAAG+TGG | 0.478043 | 1.4:-65358598 | None:intergenic |
TGCGAGAAATAATCTTAAGA+AGG | 0.480833 | 1.4:+65360012 | MS.gene005095:CDS |
ACGGCTTTATAACCCTTTGG+AGG | 0.486012 | 1.4:-65359482 | None:intergenic |
TTTCGGTTCATCTGGATTGG+TGG | 0.487936 | 1.4:-65359519 | None:intergenic |
ATTGTTGCTGCCGAGTATCT+TGG | 0.490221 | 1.4:+65360466 | MS.gene005095:CDS |
GCTCAATGAGAGCATGAATC+TGG | 0.490735 | 1.4:-65359793 | None:intergenic |
GTCCAAAGGAGAAGGACAAT+TGG | 0.490950 | 1.4:+65360674 | MS.gene005095:CDS |
CTCACAAACTTCTGTTAGAT+CGG | 0.493970 | 1.4:-65359567 | None:intergenic |
GGGTTGCAGGTCCATTGAAT+GGG | 0.500640 | 1.4:-65360120 | None:intergenic |
GCCGGTGGAAGAATATCCCT+TGG | 0.503378 | 1.4:+65359149 | MS.gene005095:CDS |
CTACTTTGATTCTGAACAAG+TGG | 0.505519 | 1.4:+65359712 | MS.gene005095:CDS |
CGGTGAAGTTGCTCACGCGA+AGG | 0.508371 | 1.4:-65360213 | None:intergenic |
TTGTTCCGAGTCAGAATCCT+TGG | 0.510563 | 1.4:+65359379 | MS.gene005095:CDS |
CATGCTAGCTATCCTCATGC+AGG | 0.510869 | 1.4:+65360349 | MS.gene005095:CDS |
CCTTGTGGCCATTGTGGAAG+AGG | 0.512962 | 1.4:-65358622 | None:intergenic |
CCACATTGCAATATCAGTAA+AGG | 0.513990 | 1.4:-65360089 | None:intergenic |
TTGGTTGCCTAACCCTCCAA+AGG | 0.523651 | 1.4:+65359469 | MS.gene005095:CDS |
AATTCTAATGGAAAGGCACT+AGG | 0.529623 | 1.4:+65359224 | MS.gene005095:CDS |
CATGCAGGGACTTACCTTCA+GGG | 0.530671 | 1.4:+65360364 | MS.gene005095:CDS |
AACAGAGCTTTCTGGTGAGG+AGG | 0.540070 | 1.4:+65360642 | MS.gene005095:CDS |
GTATACTGCGGGTAATGCAA+AGG | 0.543009 | 1.4:+65359901 | MS.gene005095:CDS |
ACAGAGCTTTCTGGTGAGGA+GGG | 0.543440 | 1.4:+65360643 | MS.gene005095:CDS |
GTAAAGGCTCCTCCTAATGC+TGG | 0.544725 | 1.4:-65360073 | None:intergenic |
AGGACACGTTCTTGTCGCTC+GGG | 0.549143 | 1.4:+65359331 | MS.gene005095:CDS |
CCGGTGGAAGAATATCCCTT+GGG | 0.549609 | 1.4:+65359150 | MS.gene005095:CDS |
AGACCTTTGGAGATTCCAGA+TGG | 0.551683 | 1.4:+65359260 | MS.gene005095:CDS |
TTCCTTCACCTCTTCCACAA+TGG | 0.552183 | 1.4:+65358614 | MS.gene005095:CDS |
GACTCCATCACCAAGATACT+CGG | 0.556847 | 1.4:-65360476 | None:intergenic |
TTACTCGTTAATATGGTGCA+TGG | 0.557123 | 1.4:+65359421 | MS.gene005095:CDS |
CGGCTTTATAACCCTTTGGA+GGG | 0.557691 | 1.4:-65359481 | None:intergenic |
GGTGAAGTTGCTCACGCGAA+GGG | 0.560176 | 1.4:-65360212 | None:intergenic |
ATTATTTCTCGCATCTTCAT+CGG | 0.561997 | 1.4:-65360002 | None:intergenic |
CGTGAATCATATACAATGGT+AGG | 0.564534 | 1.4:-65360541 | None:intergenic |
TCCAACAGAGCTTTCTGGTG+AGG | 0.565118 | 1.4:+65360639 | MS.gene005095:CDS |
GCGAGAAATAATCTTAAGAA+GGG | 0.567421 | 1.4:+65360013 | MS.gene005095:CDS |
TTTCTCGCATCTTCATCGGT+AGG | 0.570074 | 1.4:-65359998 | None:intergenic |
ATGCACAAATTCTAATGGAA+AGG | 0.570132 | 1.4:+65359217 | MS.gene005095:CDS |
TATACTGCGGGTAATGCAAA+GGG | 0.571900 | 1.4:+65359902 | MS.gene005095:CDS |
CATGTAAAACCAGCATTAGG+AGG | 0.572269 | 1.4:+65360064 | MS.gene005095:CDS |
AACATTGAGATGAACAAGAT+CGG | 0.572272 | 1.4:+65360160 | MS.gene005095:CDS |
TGGTTGCCTAACCCTCCAAA+GGG | 0.582899 | 1.4:+65359470 | MS.gene005095:CDS |
CTTCGCGTGAGCAACTTCAC+CGG | 0.582952 | 1.4:+65360214 | MS.gene005095:CDS |
TCCAATGATCAGCCGTTGCG+AGG | 0.585934 | 1.4:+65359311 | MS.gene005095:CDS |
GCCAACTGGTCCAAAGGAGA+AGG | 0.588714 | 1.4:+65360666 | MS.gene005095:CDS |
GTGGCAGTAGTAACCAAGAC+AGG | 0.592567 | 1.4:-65359288 | None:intergenic |
AAGGTTGTGTATTCCAAACC+TGG | 0.594362 | 1.4:-65359634 | None:intergenic |
AATCCATCTGGAATCTCCAA+AGG | 0.594832 | 1.4:-65359263 | None:intergenic |
ACATGCCATCATCGGTGTCG+TGG | 0.595421 | 1.4:+65359855 | MS.gene005095:CDS |
CTCATATATTGCAACCAACA+TGG | 0.598495 | 1.4:-65360508 | None:intergenic |
AAGAGCCAAGGATTCTGACT+CGG | 0.598761 | 1.4:-65359384 | None:intergenic |
CCTCTTCCACAATGGCCACA+AGG | 0.602749 | 1.4:+65358622 | MS.gene005095:CDS |
GGCACAAATTTACCTGGTGG+AGG | 0.603301 | 1.4:+65359944 | MS.gene005095:CDS |
GGTTGCAATATATGAGAGAG+TGG | 0.604682 | 1.4:+65360515 | MS.gene005095:CDS |
CATTGAGCATTACGGGCCAA+CGG | 0.604760 | 1.4:+65359808 | MS.gene005095:CDS |
TGAGAAATACATGCCATCAT+CGG | 0.607689 | 1.4:+65359847 | MS.gene005095:CDS |
CTAGCTAGAGGTGTATCTGT+CGG | 0.607900 | 1.4:+65359671 | MS.gene005095:CDS |
TATCACGGCACAAATTTACC+TGG | 0.610377 | 1.4:+65359938 | MS.gene005095:CDS |
AAGGAGAAGGACAATTGGCT+AGG | 0.611868 | 1.4:+65360679 | MS.gene005095:CDS |
TAGTTTATTCATCAAGACAT+GGG | 0.614112 | 1.4:+65360326 | MS.gene005095:CDS |
CCAAAGGGTTATAAAGCCGT+CGG | 0.615266 | 1.4:+65359485 | MS.gene005095:CDS |
GGAGGGGCCAACTGGTCCAA+AGG | 0.615580 | 1.4:+65360660 | MS.gene005095:CDS |
CCTGGTGGAGGATATAATGA+TGG | 0.615594 | 1.4:+65359956 | MS.gene005095:CDS |
TCAGGATGAAAATATACCGT+TGG | 0.617396 | 1.4:-65359824 | None:intergenic |
GGTGGTAACTACTATGCCGA+CGG | 0.618472 | 1.4:-65359501 | None:intergenic |
CAAGTTTGGATGATCCCTGA+AGG | 0.618933 | 1.4:-65360378 | None:intergenic |
GGTAAAGCTATAGATTATCA+CGG | 0.619614 | 1.4:+65359923 | MS.gene005095:CDS |
CCTTTACTGATATTGCAATG+TGG | 0.624376 | 1.4:+65360089 | MS.gene005095:CDS |
CACGGCACAAATTTACCTGG+TGG | 0.625316 | 1.4:+65359941 | MS.gene005095:CDS |
ATAATACCTTGTGGCCATTG+TGG | 0.625787 | 1.4:-65358628 | None:intergenic |
CCATCATTATATCCTCCACC+AGG | 0.627153 | 1.4:-65359956 | None:intergenic |
GTTGCAATATATGAGAGAGT+GGG | 0.627285 | 1.4:+65360516 | MS.gene005095:CDS |
GGCCATTGTGGAAGAGGTGA+AGG | 0.627997 | 1.4:-65358616 | None:intergenic |
GCTGCCGAGTATCTTGGTGA+TGG | 0.635810 | 1.4:+65360472 | MS.gene005095:CDS |
GAAGGGAAACATAGAGAGTG+CGG | 0.636222 | 1.4:+65360030 | MS.gene005095:CDS |
TGAAGGTAAGTCCCTGCATG+AGG | 0.636865 | 1.4:-65360361 | None:intergenic |
ATAGTTTATTCATCAAGACA+TGG | 0.637290 | 1.4:+65360325 | MS.gene005095:CDS |
ACAAGAACGTGTCCTCGCAA+CGG | 0.637737 | 1.4:-65359323 | None:intergenic |
TCTGTCGGAACATTCTTCTG+TGG | 0.649136 | 1.4:+65359686 | MS.gene005095:CDS |
AACAAGATCGGTGAACATGT+CGG | 0.653405 | 1.4:+65360172 | MS.gene005095:CDS |
CACTTGTTCAGAATCAAAGT+AGG | 0.653816 | 1.4:-65359711 | None:intergenic |
AGAACGTGAATCATATACAA+TGG | 0.654517 | 1.4:-65360545 | None:intergenic |
GCTAGCATACCTCTATCGCA+AGG | 0.655324 | 1.4:-65359653 | None:intergenic |
ATGCTAGCTATCCTCATGCA+GGG | 0.655682 | 1.4:+65360350 | MS.gene005095:CDS |
CAGAGCTTTCTGGTGAGGAG+GGG | 0.657357 | 1.4:+65360644 | MS.gene005095:CDS |
GCAACGGCTGATCATTGGAG+TGG | 0.664542 | 1.4:-65359307 | None:intergenic |
GAGTCATTACAGAACCATGT+TGG | 0.666649 | 1.4:+65360494 | MS.gene005095:CDS |
TTGCAATATATGAGAGAGTG+GGG | 0.676061 | 1.4:+65360517 | MS.gene005095:CDS |
GATAGAGGTATGCTAGCTAG+AGG | 0.685865 | 1.4:+65359659 | MS.gene005095:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAGAAAAAAATAATAGAAAA+AGG | - | chr1.4:65358665-65358684 | None:intergenic | 10.0% |
!! | AGAAAAAAATAATAGAAAAA+GGG | - | chr1.4:65358664-65358683 | None:intergenic | 10.0% |
!! | AAAAATAATAGAAAAAGGGA+AGG | - | chr1.4:65358660-65358679 | None:intergenic | 20.0% |
!!! | AATACTATTTGATTTCGTTT+TGG | + | chr1.4:65359028-65359047 | MS.gene005095:intron | 20.0% |
!!! | ATATTTGTGCTGTTTTTTAT+TGG | + | chr1.4:65358818-65358837 | MS.gene005095:intron | 20.0% |
!!! | TGCTAAAAGTAATTTTATTC+TGG | + | chr1.4:65360423-65360442 | MS.gene005095:CDS | 20.0% |
! | ACAGAAAACCTAACAAATAT+TGG | - | chr1.4:65360598-65360617 | None:intergenic | 25.0% |
! | ATAGTTTATTCATCAAGACA+TGG | + | chr1.4:65360325-65360344 | MS.gene005095:CDS | 25.0% |
! | CACTTAATTACTCGTTAATA+TGG | + | chr1.4:65359414-65359433 | MS.gene005095:CDS | 25.0% |
! | CATATTAACGAGTAATTAAG+TGG | - | chr1.4:65359416-65359435 | None:intergenic | 25.0% |
! | CTGTTGGAAATAATTCAAAA+AGG | - | chr1.4:65360627-65360646 | None:intergenic | 25.0% |
! | TAAACAAGTTTGAGAAAGTT+TGG | + | chr1.4:65359192-65359211 | MS.gene005095:CDS | 25.0% |
! | TAGTTTATTCATCAAGACAT+GGG | + | chr1.4:65360326-65360345 | MS.gene005095:CDS | 25.0% |
! | TGTCTTGATGAATAAACTAT+TGG | - | chr1.4:65360325-65360344 | None:intergenic | 25.0% |
!! | ATGATGAATGTGTTTACTTT+TGG | + | chr1.4:65359450-65359469 | MS.gene005095:CDS | 25.0% |
!! | GGTATTACTGTGATTAATTT+TGG | + | chr1.4:65358839-65358858 | MS.gene005095:intron | 25.0% |
!! | TTACTGTGTTCTTTCTATTT+TGG | + | chr1.4:65358748-65358767 | MS.gene005095:intron | 25.0% |
!! | TTTCACATTTTATAGACCTT+TGG | + | chr1.4:65359247-65359266 | MS.gene005095:CDS | 25.0% |
!!! | AATATTTGTTAGGTTTTCTG+TGG | + | chr1.4:65360597-65360616 | MS.gene005095:CDS | 25.0% |
!!! | ATTCGATTTGGAGTTTATTA+AGG | + | chr1.4:65360291-65360310 | MS.gene005095:CDS | 25.0% |
!!! | GTAGTATTTTTTGCAGATAT+TGG | + | chr1.4:65358867-65358886 | MS.gene005095:intron | 25.0% |
!!! | TTTGAGTTGATGATTAAAAC+AGG | - | chr1.4:65358711-65358730 | None:intergenic | 25.0% |
!!! | TTTGATTTCGTTTTGGTTAT+TGG | + | chr1.4:65359035-65359054 | MS.gene005095:intron | 25.0% |
AACATTGAGATGAACAAGAT+CGG | + | chr1.4:65360160-65360179 | MS.gene005095:CDS | 30.0% | |
ACATGCTTCCAATATTTGTT+AGG | + | chr1.4:65360587-65360606 | MS.gene005095:CDS | 30.0% | |
AGAAAAATTCTTTCCAGGTT+TGG | + | chr1.4:65359621-65359640 | MS.gene005095:CDS | 30.0% | |
AGAACGTGAATCATATACAA+TGG | - | chr1.4:65360548-65360567 | None:intergenic | 30.0% | |
ATGCACAAATTCTAATGGAA+AGG | + | chr1.4:65359217-65359236 | MS.gene005095:CDS | 30.0% | |
CTTTACTGATATTGCAATGT+GGG | + | chr1.4:65360090-65360109 | MS.gene005095:CDS | 30.0% | |
GCGAGAAATAATCTTAAGAA+GGG | + | chr1.4:65360013-65360032 | MS.gene005095:CDS | 30.0% | |
GGTAAAGCTATAGATTATCA+CGG | + | chr1.4:65359923-65359942 | MS.gene005095:CDS | 30.0% | |
GTCAAAGAAAAATTCTTTCC+AGG | + | chr1.4:65359616-65359635 | MS.gene005095:CDS | 30.0% | |
GTTCATCAATGACACTTTAA+GGG | - | chr1.4:65360143-65360162 | None:intergenic | 30.0% | |
TGCGAGAAATAATCTTAAGA+AGG | + | chr1.4:65360012-65360031 | MS.gene005095:CDS | 30.0% | |
TGTTCATCAATGACACTTTA+AGG | - | chr1.4:65360144-65360163 | None:intergenic | 30.0% | |
! | ATTATTTCTCGCATCTTCAT+CGG | - | chr1.4:65360005-65360024 | None:intergenic | 30.0% |
!! | TGTAACTTGTATTTTCCCAA+GGG | - | chr1.4:65359168-65359187 | None:intergenic | 30.0% |
!! | TTGTAACTTGTATTTTCCCA+AGG | - | chr1.4:65359169-65359188 | None:intergenic | 30.0% |
CACTTGTTCAGAATCAAAGT+AGG | - | chr1.4:65359714-65359733 | None:intergenic | 35.0% | |
CATCGAACTTCTTCAACTTT+CGG | - | chr1.4:65359539-65359558 | None:intergenic | 35.0% | |
CCACATTGCAATATCAGTAA+AGG | - | chr1.4:65360092-65360111 | None:intergenic | 35.0% | |
CCTTTACTGATATTGCAATG+TGG | + | chr1.4:65360089-65360108 | MS.gene005095:CDS | 35.0% | |
CGTGAATCATATACAATGGT+AGG | - | chr1.4:65360544-65360563 | None:intergenic | 35.0% | |
CTACTTTGATTCTGAACAAG+TGG | + | chr1.4:65359712-65359731 | MS.gene005095:CDS | 35.0% | |
CTCACAAACTTCTGTTAGAT+CGG | - | chr1.4:65359570-65359589 | None:intergenic | 35.0% | |
CTCATATATTGCAACCAACA+TGG | - | chr1.4:65360511-65360530 | None:intergenic | 35.0% | |
GTTCATGTAAAACCAGCATT+AGG | + | chr1.4:65360061-65360080 | MS.gene005095:CDS | 35.0% | |
GTTGCAATATATGAGAGAGT+GGG | + | chr1.4:65360516-65360535 | MS.gene005095:CDS | 35.0% | |
TCAGGATGAAAATATACCGT+TGG | - | chr1.4:65359827-65359846 | None:intergenic | 35.0% | |
TGAGAAATACATGCCATCAT+CGG | + | chr1.4:65359847-65359866 | MS.gene005095:CDS | 35.0% | |
TGGAGATGCACAAATTCTAA+TGG | + | chr1.4:65359212-65359231 | MS.gene005095:CDS | 35.0% | |
TTACTCGTTAATATGGTGCA+TGG | + | chr1.4:65359421-65359440 | MS.gene005095:CDS | 35.0% | |
TTATTTCCAACAGAGCTTTC+TGG | + | chr1.4:65360634-65360653 | MS.gene005095:CDS | 35.0% | |
TTGCAATATATGAGAGAGTG+GGG | + | chr1.4:65360517-65360536 | MS.gene005095:CDS | 35.0% | |
! | ATGGGTTAATGCATTCGATT+TGG | + | chr1.4:65360279-65360298 | MS.gene005095:CDS | 35.0% |
! | TGGAGCAATTTTGTATACTG+CGG | + | chr1.4:65359889-65359908 | MS.gene005095:CDS | 35.0% |
!! | AATTCTAATGGAAAGGCACT+AGG | + | chr1.4:65359224-65359243 | MS.gene005095:CDS | 35.0% |
!! | AGGTTGATGATAATACCTTG+TGG | - | chr1.4:65358640-65358659 | None:intergenic | 35.0% |
!! | GATATAATGATGGTGCGTTT+TGG | + | chr1.4:65359966-65359985 | MS.gene005095:CDS | 35.0% |
!!! | TGGTTTTGAGTGTTCTTGTT+GGG | + | chr1.4:65358546-65358565 | MS.gene005095:CDS | 35.0% |
!!! | TTGGTTTTGAGTGTTCTTGT+TGG | + | chr1.4:65358545-65358564 | MS.gene005095:CDS | 35.0% |
AAAAACAGACCAAAGCTCTC+CGG | - | chr1.4:65360236-65360255 | None:intergenic | 40.0% | |
AACAAGATCGGTGAACATGT+CGG | + | chr1.4:65360172-65360191 | MS.gene005095:CDS | 40.0% | |
AACTTTCGGTTCATCTGGAT+TGG | - | chr1.4:65359525-65359544 | None:intergenic | 40.0% | |
AAGAGGTGAAGGAAGAGAAA+AGG | - | chr1.4:65358608-65358627 | None:intergenic | 40.0% | |
AAGGTTGTGTATTCCAAACC+TGG | - | chr1.4:65359637-65359656 | None:intergenic | 40.0% | |
AATACACAACCTTGCGATAG+AGG | + | chr1.4:65359644-65359663 | MS.gene005095:CDS | 40.0% | |
AGAGGTGAAGGAAGAGAAAA+GGG | - | chr1.4:65358607-65358626 | None:intergenic | 40.0% | |
ATAATACCTTGTGGCCATTG+TGG | - | chr1.4:65358631-65358650 | None:intergenic | 40.0% | |
ATGCTCTCATTGAGCATTAC+GGG | + | chr1.4:65359801-65359820 | MS.gene005095:CDS | 40.0% | |
CATGCTCTCATTGAGCATTA+CGG | + | chr1.4:65359800-65359819 | MS.gene005095:CDS | 40.0% | |
CATGTAAAACCAGCATTAGG+AGG | + | chr1.4:65360064-65360083 | MS.gene005095:CDS | 40.0% | |
GAGTCATTACAGAACCATGT+TGG | + | chr1.4:65360494-65360513 | MS.gene005095:CDS | 40.0% | |
GATGGCATGTATTTCTCATC+AGG | - | chr1.4:65359845-65359864 | None:intergenic | 40.0% | |
GCATGAATCTGGTTGAGATT+CGG | - | chr1.4:65359785-65359804 | None:intergenic | 40.0% | |
GGAACAATCAGCTTGAGATT+TGG | - | chr1.4:65359366-65359385 | None:intergenic | 40.0% | |
GGATCAGAGTCAAAGAATTC+TGG | - | chr1.4:65358580-65358599 | None:intergenic | 40.0% | |
GGATCATCCAAACTTGGAAT+AGG | + | chr1.4:65360385-65360404 | MS.gene005095:CDS | 40.0% | |
GGTTGCAATATATGAGAGAG+TGG | + | chr1.4:65360515-65360534 | MS.gene005095:CDS | 40.0% | |
TATACTGCGGGTAATGCAAA+GGG | + | chr1.4:65359902-65359921 | MS.gene005095:CDS | 40.0% | |
TATCACGGCACAAATTTACC+TGG | + | chr1.4:65359938-65359957 | MS.gene005095:CDS | 40.0% | |
TCTTCAACTTTCGGTTCATC+TGG | - | chr1.4:65359530-65359549 | None:intergenic | 40.0% | |
! | AATCCATCTGGAATCTCCAA+AGG | - | chr1.4:65359266-65359285 | None:intergenic | 40.0% |
! | AATGACACTTTAAGGGTTGC+AGG | - | chr1.4:65360136-65360155 | None:intergenic | 40.0% |
! | GGAGCAATTTTGTATACTGC+GGG | + | chr1.4:65359890-65359909 | MS.gene005095:CDS | 40.0% |
! | TTATAACCCTTTGGAGGGTT+AGG | - | chr1.4:65359479-65359498 | None:intergenic | 40.0% |
!! | AAGTGGCTTTTTAAGAGCCA+AGG | - | chr1.4:65359399-65359418 | None:intergenic | 40.0% |
!!! | GTGTCGTGGTTTTTCAAGAA+TGG | + | chr1.4:65359869-65359888 | MS.gene005095:CDS | 40.0% |
!!! | GTTTTTTTCTCTGAGCACAG+TGG | + | chr1.4:65360250-65360269 | MS.gene005095:CDS | 40.0% |
!!! | TGGGTTTTTTGCCCATTCAA+TGG | + | chr1.4:65360109-65360128 | MS.gene005095:CDS | 40.0% |
AAAAACCACGACACCGATGA+TGG | - | chr1.4:65359863-65359882 | None:intergenic | 45.0% | |
AAGAGCCAAGGATTCTGACT+CGG | - | chr1.4:65359387-65359406 | None:intergenic | 45.0% | |
AAGGAGAAGGACAATTGGCT+AGG | + | chr1.4:65360679-65360698 | MS.gene005095:CDS | 45.0% | |
AGCCAATTGTCCTTCTCCTT+TGG | - | chr1.4:65360679-65360698 | None:intergenic | 45.0% | |
AGCTTGTGAGTGATCTACTC+AGG | + | chr1.4:65359116-65359135 | MS.gene005095:intron | 45.0% | |
ATGCTAGCTATCCTCATGCA+GGG | + | chr1.4:65360350-65360369 | MS.gene005095:CDS | 45.0% | |
ATTGTTGCTGCCGAGTATCT+TGG | + | chr1.4:65360466-65360485 | MS.gene005095:CDS | 45.0% | |
CAAGTTTGGATGATCCCTGA+AGG | - | chr1.4:65360381-65360400 | None:intergenic | 45.0% | |
CCAAAGGGTTATAAAGCCGT+CGG | + | chr1.4:65359485-65359504 | MS.gene005095:CDS | 45.0% | |
CCAAGACAGGAAAATCCATC+TGG | - | chr1.4:65359278-65359297 | None:intergenic | 45.0% | |
CCATCATTATATCCTCCACC+AGG | - | chr1.4:65359959-65359978 | None:intergenic | 45.0% | |
CCTGGTGGAGGATATAATGA+TGG | + | chr1.4:65359956-65359975 | MS.gene005095:CDS | 45.0% | |
CTTCAGGGATCATCCAAACT+TGG | + | chr1.4:65360379-65360398 | MS.gene005095:CDS | 45.0% | |
GAAGGAAGAGAAAAGGGAAG+TGG | - | chr1.4:65358601-65358620 | None:intergenic | 45.0% | |
GAAGGGAAACATAGAGAGTG+CGG | + | chr1.4:65360030-65360049 | MS.gene005095:CDS | 45.0% | |
GACTCCATCACCAAGATACT+CGG | - | chr1.4:65360479-65360498 | None:intergenic | 45.0% | |
GCGAACTCCTATTCCAAGTT+TGG | - | chr1.4:65360395-65360414 | None:intergenic | 45.0% | |
GTATACTGCGGGTAATGCAA+AGG | + | chr1.4:65359901-65359920 | MS.gene005095:CDS | 45.0% | |
GTCCAAAGGAGAAGGACAAT+TGG | + | chr1.4:65360674-65360693 | MS.gene005095:CDS | 45.0% | |
TCTGTCGGAACATTCTTCTG+TGG | + | chr1.4:65359686-65359705 | MS.gene005095:CDS | 45.0% | |
TGAGCACAGTGGAGGTAAAT+GGG | + | chr1.4:65360261-65360280 | MS.gene005095:CDS | 45.0% | |
TTCCTTCACCTCTTCCACAA+TGG | + | chr1.4:65358614-65358633 | MS.gene005095:CDS | 45.0% | |
TTGTGAGTGATCTACTCAGG+TGG | + | chr1.4:65359119-65359138 | MS.gene005095:intron | 45.0% | |
TTGTTCCGAGTCAGAATCCT+TGG | + | chr1.4:65359379-65359398 | MS.gene005095:CDS | 45.0% | |
TTTCTCGCATCTTCATCGGT+AGG | - | chr1.4:65360001-65360020 | None:intergenic | 45.0% | |
! | ACGGCTTTATAACCCTTTGG+AGG | - | chr1.4:65359485-65359504 | None:intergenic | 45.0% |
! | AGACCTTTGGAGATTCCAGA+TGG | + | chr1.4:65359260-65359279 | MS.gene005095:CDS | 45.0% |
! | CGGCTTTATAACCCTTTGGA+GGG | - | chr1.4:65359484-65359503 | None:intergenic | 45.0% |
! | CTAGCTAGAGGTGTATCTGT+CGG | + | chr1.4:65359671-65359690 | MS.gene005095:CDS | 45.0% |
! | GATAGAGGTATGCTAGCTAG+AGG | + | chr1.4:65359659-65359678 | MS.gene005095:CDS | 45.0% |
! | GCTCAATGAGAGCATGAATC+TGG | - | chr1.4:65359796-65359815 | None:intergenic | 45.0% |
! | TTTCGGTTCATCTGGATTGG+TGG | - | chr1.4:65359522-65359541 | None:intergenic | 45.0% |
! | TTTTTCTCTGAGCACAGTGG+AGG | + | chr1.4:65360253-65360272 | MS.gene005095:CDS | 45.0% |
!! | CCAGATGGATTTTCCTGTCT+TGG | + | chr1.4:65359275-65359294 | MS.gene005095:CDS | 45.0% |
ACAAGAACGTGTCCTCGCAA+CGG | - | chr1.4:65359326-65359345 | None:intergenic | 50.0% | |
AGGGTTGCAGGTCCATTGAA+TGG | - | chr1.4:65360124-65360143 | None:intergenic | 50.0% | |
CACGGCACAAATTTACCTGG+TGG | + | chr1.4:65359941-65359960 | MS.gene005095:CDS | 50.0% | |
CATGCAGGGACTTACCTTCA+GGG | + | chr1.4:65360364-65360383 | MS.gene005095:CDS | 50.0% | |
CATGCTAGCTATCCTCATGC+AGG | + | chr1.4:65360349-65360368 | MS.gene005095:CDS | 50.0% | |
CATTGAGCATTACGGGCCAA+CGG | + | chr1.4:65359808-65359827 | MS.gene005095:CDS | 50.0% | |
CCCAAGGGATATTCTTCCAC+CGG | - | chr1.4:65359153-65359172 | None:intergenic | 50.0% | |
CCGGTGGAAGAATATCCCTT+GGG | + | chr1.4:65359150-65359169 | MS.gene005095:CDS | 50.0% | |
CGGTGAACATGTCGGTGATT+GGG | + | chr1.4:65360180-65360199 | MS.gene005095:CDS | 50.0% | |
CTGAGCACAGTGGAGGTAAA+TGG | + | chr1.4:65360260-65360279 | MS.gene005095:CDS | 50.0% | |
GCTAGCATACCTCTATCGCA+AGG | - | chr1.4:65359656-65359675 | None:intergenic | 50.0% | |
GGCACAAATTTACCTGGTGG+AGG | + | chr1.4:65359944-65359963 | MS.gene005095:CDS | 50.0% | |
GGGTTGCAGGTCCATTGAAT+GGG | - | chr1.4:65360123-65360142 | None:intergenic | 50.0% | |
GGTGGTAACTACTATGCCGA+CGG | - | chr1.4:65359504-65359523 | None:intergenic | 50.0% | |
GTAAAGGCTCCTCCTAATGC+TGG | - | chr1.4:65360076-65360095 | None:intergenic | 50.0% | |
GTGGCAGTAGTAACCAAGAC+AGG | - | chr1.4:65359291-65359310 | None:intergenic | 50.0% | |
TCATGCAGGGACTTACCTTC+AGG | + | chr1.4:65360363-65360382 | MS.gene005095:CDS | 50.0% | |
TCCTCACCAGAAAGCTCTGT+TGG | - | chr1.4:65360643-65360662 | None:intergenic | 50.0% | |
TCCTTCTCCTTTGGACCAGT+TGG | - | chr1.4:65360670-65360689 | None:intergenic | 50.0% | |
TCGGTGAACATGTCGGTGAT+TGG | + | chr1.4:65360179-65360198 | MS.gene005095:CDS | 50.0% | |
TGAAGGTAAGTCCCTGCATG+AGG | - | chr1.4:65360364-65360383 | None:intergenic | 50.0% | |
TGAGTGATCTACTCAGGTGG+TGG | + | chr1.4:65359122-65359141 | MS.gene005095:intron | 50.0% | |
TGGTTGCCTAACCCTCCAAA+GGG | + | chr1.4:65359470-65359489 | MS.gene005095:CDS | 50.0% | |
TTGGTTGCCTAACCCTCCAA+AGG | + | chr1.4:65359469-65359488 | MS.gene005095:CDS | 50.0% | |
! | AACAGAGCTTTCTGGTGAGG+AGG | + | chr1.4:65360642-65360661 | MS.gene005095:CDS | 50.0% |
! | ACAGAGCTTTCTGGTGAGGA+GGG | + | chr1.4:65360643-65360662 | MS.gene005095:CDS | 50.0% |
! | CCGACGGCTTTATAACCCTT+TGG | - | chr1.4:65359488-65359507 | None:intergenic | 50.0% |
! | TCCAACAGAGCTTTCTGGTG+AGG | + | chr1.4:65360639-65360658 | MS.gene005095:CDS | 50.0% |
!! | TACTCAGGTGGTGGTTTTGC+CGG | + | chr1.4:65359131-65359150 | MS.gene005095:intron | 50.0% |
AGGACACGTTCTTGTCGCTC+GGG | + | chr1.4:65359331-65359350 | MS.gene005095:CDS | 55.0% | |
CCTCTTCCACAATGGCCACA+AGG | + | chr1.4:65358622-65358641 | MS.gene005095:CDS | 55.0% | |
CCTTGTGGCCATTGTGGAAG+AGG | - | chr1.4:65358625-65358644 | None:intergenic | 55.0% | |
CTTCGCGTGAGCAACTTCAC+CGG | + | chr1.4:65360214-65360233 | MS.gene005095:CDS | 55.0% | |
GAGGACACGTTCTTGTCGCT+CGG | + | chr1.4:65359330-65359349 | MS.gene005095:CDS | 55.0% | |
GCAACGGCTGATCATTGGAG+TGG | - | chr1.4:65359310-65359329 | None:intergenic | 55.0% | |
GCAACTTCACCGGAGAGCTT+TGG | + | chr1.4:65360224-65360243 | MS.gene005095:CDS | 55.0% | |
GCCAACTGGTCCAAAGGAGA+AGG | + | chr1.4:65360666-65360685 | MS.gene005095:CDS | 55.0% | |
GCCGGTGGAAGAATATCCCT+TGG | + | chr1.4:65359149-65359168 | MS.gene005095:CDS | 55.0% | |
GCTGCCGAGTATCTTGGTGA+TGG | + | chr1.4:65360472-65360491 | MS.gene005095:CDS | 55.0% | |
GGCCATTGTGGAAGAGGTGA+AGG | - | chr1.4:65358619-65358638 | None:intergenic | 55.0% | |
GGTGAAGTTGCTCACGCGAA+GGG | - | chr1.4:65360215-65360234 | None:intergenic | 55.0% | |
TCCAATGATCAGCCGTTGCG+AGG | + | chr1.4:65359311-65359330 | MS.gene005095:CDS | 55.0% | |
TCCTCGCAACGGCTGATCAT+TGG | - | chr1.4:65359315-65359334 | None:intergenic | 55.0% | |
! | CAGAGCTTTCTGGTGAGGAG+GGG | + | chr1.4:65360644-65360663 | MS.gene005095:CDS | 55.0% |
!! | ACATGCCATCATCGGTGTCG+TGG | + | chr1.4:65359855-65359874 | MS.gene005095:CDS | 55.0% |
CGGTGAAGTTGCTCACGCGA+AGG | - | chr1.4:65360216-65360235 | None:intergenic | 60.0% | |
!! | TCAGGTGGTGGTTTTGCCGG+TGG | + | chr1.4:65359134-65359153 | MS.gene005095:intron | 60.0% |
GGAGGGGCCAACTGGTCCAA+AGG | + | chr1.4:65360660-65360679 | MS.gene005095:CDS | 65.0% | |
TCTGGTGAGGAGGGGCCAAC+TGG | + | chr1.4:65360652-65360671 | MS.gene005095:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.4 | gene | 65358541 | 65360717 | 65358541 | ID=MS.gene005095 |
chr1.4 | mRNA | 65358541 | 65360717 | 65358541 | ID=MS.gene005095.t1;Parent=MS.gene005095 |
chr1.4 | exon | 65358541 | 65358643 | 65358541 | ID=MS.gene005095.t1.exon1;Parent=MS.gene005095.t1 |
chr1.4 | CDS | 65358541 | 65358643 | 65358541 | ID=cds.MS.gene005095.t1;Parent=MS.gene005095.t1 |
chr1.4 | exon | 65359138 | 65360717 | 65359138 | ID=MS.gene005095.t1.exon2;Parent=MS.gene005095.t1 |
chr1.4 | CDS | 65359138 | 65360717 | 65359138 | ID=cds.MS.gene005095.t1;Parent=MS.gene005095.t1 |
Gene Sequence |
Protein sequence |