Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005097.t1 | XP_003590981.1 | 97.9 | 560 | 12 | 0 | 1 | 560 | 1 | 560 | 2.90E-303 | 1050.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005097.t1 | G7I6T7 | 97.9 | 560 | 12 | 0 | 1 | 560 | 1 | 560 | 2.1e-303 | 1050.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene000191 | MS.gene005097 | PPI |
| MS.gene043859 | MS.gene005097 | PPI |
| MS.gene33537 | MS.gene005097 | PPI |
| MS.gene000190 | MS.gene005097 | PPI |
| MS.gene60883 | MS.gene005097 | PPI |
| MS.gene042258 | MS.gene005097 | PPI |
| MS.gene60888 | MS.gene005097 | PPI |
| MS.gene60881 | MS.gene005097 | PPI |
| MS.gene042257 | MS.gene005097 | PPI |
| MS.gene000192 | MS.gene005097 | PPI |
| MS.gene000193 | MS.gene005097 | PPI |
| MS.gene012606 | MS.gene005097 | PPI |
| MS.gene061203 | MS.gene005097 | PPI |
| MS.gene60887 | MS.gene005097 | PPI |
| MS.gene043858 | MS.gene005097 | PPI |
| MS.gene60886 | MS.gene005097 | PPI |
| MS.gene60889 | MS.gene005097 | PPI |
| MS.gene043855 | MS.gene005097 | PPI |
| MS.gene60884 | MS.gene005097 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005097.t1 | MTR_1g080370 | 97.857 | 560 | 12 | 0 | 1 | 560 | 1 | 560 | 0.0 | 1140 |
| MS.gene005097.t1 | MTR_1g080410 | 97.857 | 560 | 12 | 0 | 1 | 560 | 1 | 560 | 0.0 | 1140 |
| MS.gene005097.t1 | MTR_5g007860 | 56.140 | 570 | 233 | 7 | 4 | 558 | 38 | 605 | 0.0 | 659 |
| MS.gene005097.t1 | MTR_4g077620 | 55.009 | 569 | 241 | 8 | 1 | 558 | 3 | 567 | 0.0 | 654 |
| MS.gene005097.t1 | MTR_2g062430 | 46.903 | 565 | 268 | 12 | 6 | 558 | 8 | 552 | 2.69e-173 | 502 |
| MS.gene005097.t1 | MTR_2g067640 | 45.652 | 552 | 263 | 10 | 20 | 558 | 13 | 540 | 3.68e-170 | 493 |
| MS.gene005097.t1 | MTR_2g062410 | 46.422 | 545 | 267 | 9 | 23 | 558 | 57 | 585 | 3.70e-167 | 487 |
| MS.gene005097.t1 | MTR_2g062370 | 44.991 | 549 | 273 | 9 | 23 | 558 | 57 | 589 | 2.36e-160 | 470 |
| MS.gene005097.t1 | MTR_4g131710 | 44.646 | 551 | 274 | 10 | 23 | 558 | 51 | 585 | 7.88e-160 | 469 |
| MS.gene005097.t1 | MTR_2g062380 | 45.996 | 537 | 260 | 9 | 35 | 558 | 40 | 559 | 4.14e-154 | 453 |
| MS.gene005097.t1 | MTR_2g062340 | 44.505 | 546 | 244 | 9 | 23 | 558 | 20 | 516 | 3.90e-151 | 444 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005097.t1 | AT3G04350 | 64.336 | 572 | 187 | 7 | 1 | 560 | 1 | 567 | 0.0 | 761 |
| MS.gene005097.t1 | AT5G18490 | 63.298 | 564 | 187 | 8 | 4 | 560 | 3 | 553 | 0.0 | 736 |
| MS.gene005097.t1 | AT3G04350 | 65.047 | 535 | 173 | 6 | 35 | 560 | 16 | 545 | 0.0 | 722 |
| MS.gene005097.t1 | AT1G04090 | 53.726 | 577 | 245 | 9 | 1 | 560 | 1 | 572 | 0.0 | 648 |
| MS.gene005097.t1 | AT5G43950 | 53.578 | 573 | 242 | 9 | 1 | 558 | 1 | 564 | 0.0 | 632 |
| MS.gene005097.t1 | AT2G44260 | 45.588 | 544 | 268 | 9 | 23 | 558 | 29 | 552 | 4.63e-167 | 486 |
| MS.gene005097.t1 | AT2G44230 | 45.338 | 547 | 263 | 10 | 23 | 558 | 20 | 541 | 5.66e-167 | 485 |
| MS.gene005097.t1 | AT2G44260 | 45.489 | 532 | 262 | 9 | 35 | 558 | 71 | 582 | 1.40e-161 | 473 |
| MS.gene005097.t1 | AT3G01870 | 40.998 | 561 | 291 | 13 | 15 | 558 | 46 | 583 | 6.20e-138 | 412 |
| MS.gene005097.t1 | AT3G01880 | 41.636 | 550 | 285 | 13 | 23 | 558 | 62 | 589 | 2.35e-136 | 409 |
Find 138 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTCATCAATGACACTTTA+AGG | 0.107306 | 1.4:-65374961 | None:intergenic |
| CATGCTCTTATTGAGCATTA+TGG | 0.140530 | 1.4:+65374620 | MS.gene005097:CDS |
| TAAACAAGTTTGAGAAAGTT+TGG | 0.235719 | 1.4:+65374012 | MS.gene005097:CDS |
| CTGAGCACAGTGGAGGTAAA+TGG | 0.247800 | 1.4:+65375080 | MS.gene005097:CDS |
| TTATTTCCAACAGAGCTTTC+TGG | 0.254169 | 1.4:+65375454 | MS.gene005097:CDS |
| ATTCGATTTGGAGTTTATTA+AGG | 0.263278 | 1.4:+65375111 | MS.gene005097:CDS |
| CACTTAATTACTCATTAATA+TGG | 0.264581 | 1.4:+65374234 | MS.gene005097:CDS |
| GGATCAGCGTCAAAGAATTC+TGG | 0.283321 | 1.4:-65373455 | None:intergenic |
| AGCCAATTGTCCTTCTCCTT+TGG | 0.307063 | 1.4:-65375496 | None:intergenic |
| GCGAACTCCTATTCCAAGTT+TGG | 0.314359 | 1.4:-65375212 | None:intergenic |
| TGTCTTGATGAATAAACTAT+TGG | 0.322222 | 1.4:-65375142 | None:intergenic |
| ATGCTCTTATTGAGCATTAT+GGG | 0.323477 | 1.4:+65374621 | MS.gene005097:CDS |
| ACAGAAAACCTAACAAATAT+TGG | 0.329471 | 1.4:-65375415 | None:intergenic |
| GATATAATGATGGTGCGTTT+TGG | 0.329648 | 1.4:+65374786 | MS.gene005097:CDS |
| CATCGAACTTCTTCAACTTT+CGG | 0.340671 | 1.4:-65374356 | None:intergenic |
| TCTTCAACTTTCGGTTCATC+TGG | 0.342527 | 1.4:-65374347 | None:intergenic |
| ATGGGTTAATGCATTCGATT+TGG | 0.345620 | 1.4:+65375099 | MS.gene005097:CDS |
| ATGATGAATGTGTTTACTTT+TGG | 0.348745 | 1.4:+65374270 | MS.gene005097:CDS |
| TCCTTCTCCTTTGGACCAGT+TGG | 0.349557 | 1.4:-65375487 | None:intergenic |
| ACATGCTTCCAATATTTGTT+AGG | 0.353415 | 1.4:+65375407 | MS.gene005097:CDS |
| AATGACACTTTAAGGGTTGC+AGG | 0.360391 | 1.4:-65374953 | None:intergenic |
| GTTCATCAATGACACTTTAA+GGG | 0.377575 | 1.4:-65374960 | None:intergenic |
| TCTGGTGAGGAGGGGCCAAC+TGG | 0.379305 | 1.4:+65375472 | MS.gene005097:CDS |
| AACTTTCGGTTCATCTGGAT+TGG | 0.384698 | 1.4:-65374342 | None:intergenic |
| TTACTCATTAATATGGTGTA+TGG | 0.386638 | 1.4:+65374241 | MS.gene005097:CDS |
| CTGTTGGAAATAATTCAAAA+AGG | 0.390774 | 1.4:-65375444 | None:intergenic |
| GTGGTTTGGTAAGGGATGTT+TGG | 0.395720 | 1.4:+65373404 | None:intergenic |
| AGAGGTGAAGGAAGAGAAAA+GGG | 0.395917 | 1.4:-65373482 | None:intergenic |
| AAGAGGTGAAGGAAGAGAAA+AGG | 0.400057 | 1.4:-65373483 | None:intergenic |
| TCATGCAGGGACTTACCTTC+AGG | 0.415789 | 1.4:+65375183 | MS.gene005097:CDS |
| CCGACAGCTTTATAACCCTT+TGG | 0.416316 | 1.4:-65374305 | None:intergenic |
| ATTATTTCTCGCATCTTCAT+TGG | 0.421196 | 1.4:-65374822 | None:intergenic |
| CATATTAATGAGTAATTAAG+TGG | 0.423515 | 1.4:-65374233 | None:intergenic |
| AGGGTTGCAGGTCCATTGAA+TGG | 0.426014 | 1.4:-65374941 | None:intergenic |
| TCCTCGCAACGGCTGATCAT+TGG | 0.426252 | 1.4:-65374132 | None:intergenic |
| GTTCATGTAAAACCAGCATT+AGG | 0.426763 | 1.4:+65374881 | MS.gene005097:CDS |
| GCTCAATAAGAGCATGAATC+TGG | 0.427486 | 1.4:-65374613 | None:intergenic |
| CTTCAGGGATCATCCAAACT+TGG | 0.432488 | 1.4:+65375199 | MS.gene005097:CDS |
| CGGTGAACATGTCGGTGATT+GGG | 0.432674 | 1.4:+65375000 | MS.gene005097:CDS |
| TCGGTGAACATGTCGGTGAT+TGG | 0.434338 | 1.4:+65374999 | MS.gene005097:CDS |
| GCAACTTCACCGGAGAGCTT+TGG | 0.443367 | 1.4:+65375044 | MS.gene005097:CDS |
| TTATAACCCTTTGGAGGGTT+AGG | 0.448233 | 1.4:-65374296 | None:intergenic |
| GGATCATCCAAACTTGGAAT+AGG | 0.450282 | 1.4:+65375205 | MS.gene005097:CDS |
| GATGGCATGTATTTCTCATC+AGG | 0.457793 | 1.4:-65374662 | None:intergenic |
| CCCAAGTGATATTCTTCCAC+CGG | 0.460813 | 1.4:-65373970 | None:intergenic |
| TCCTCACCAGAAAGCTCTGT+TGG | 0.461764 | 1.4:-65375460 | None:intergenic |
| GCATGAATCTGGTTGAGATT+CGG | 0.468325 | 1.4:-65374602 | None:intergenic |
| AATACACAACCTTGCGATAG+AGG | 0.468770 | 1.4:+65374464 | MS.gene005097:CDS |
| CCAAGACAGGAAAATCCATC+TGG | 0.469039 | 1.4:-65374095 | None:intergenic |
| GAGGACACGTTCTTGTCGCT+CGG | 0.471944 | 1.4:+65374150 | MS.gene005097:CDS |
| TGAGCACAGTGGAGGTAAAT+GGG | 0.475593 | 1.4:+65375081 | MS.gene005097:CDS |
| CTTTACTGATATTGCAATGT+GGG | 0.475927 | 1.4:+65374910 | MS.gene005097:CDS |
| GAAGGAAGAGAAAAGGGAAG+TGG | 0.478043 | 1.4:-65373476 | None:intergenic |
| TGCGAGAAATAATCATAAGA+AGG | 0.480833 | 1.4:+65374832 | MS.gene005097:CDS |
| TTTCGGTTCATCTGGATTGG+TGG | 0.487936 | 1.4:-65374339 | None:intergenic |
| ATTGTTGCTGCCGAGTATCT+TGG | 0.490221 | 1.4:+65375286 | MS.gene005097:CDS |
| GTCCAAAGGAGAAGGACAAT+TGG | 0.490950 | 1.4:+65375494 | MS.gene005097:CDS |
| GATCAGCGTCAAAGAATTCT+GGG | 0.494149 | 1.4:-65373454 | None:intergenic |
| GGGTTGCAGGTCCATTGAAT+GGG | 0.500640 | 1.4:-65374940 | None:intergenic |
| CTACTTTGATTCTGAACAAG+TGG | 0.505519 | 1.4:+65374532 | MS.gene005097:CDS |
| CTCGCAAACTTCTGTTAGAT+CGG | 0.508339 | 1.4:-65374387 | None:intergenic |
| CGGTGAAGTTGCTCACGCGA+AGG | 0.508371 | 1.4:-65375033 | None:intergenic |
| CATGCTAGCTATCCTCATGC+AGG | 0.510869 | 1.4:+65375169 | MS.gene005097:CDS |
| CCTTGTGGCCATTGTGGAAG+AGG | 0.512962 | 1.4:-65373500 | None:intergenic |
| CCACATTGCAATATCAGTAA+AGG | 0.513990 | 1.4:-65374909 | None:intergenic |
| ACAGCTTTATAACCCTTTGG+AGG | 0.522987 | 1.4:-65374302 | None:intergenic |
| TTGGTTGCCTAACCCTCCAA+AGG | 0.523651 | 1.4:+65374289 | MS.gene005097:CDS |
| CATGCAGGGACTTACCTTCA+GGG | 0.530671 | 1.4:+65375184 | MS.gene005097:CDS |
| TTTCTCGCATCTTCATTGGT+AGG | 0.535231 | 1.4:-65374818 | None:intergenic |
| AACAGAGCTTTCTGGTGAGG+AGG | 0.540070 | 1.4:+65375462 | MS.gene005097:CDS |
| GTATACTGCGGGTAATGCAA+AGG | 0.543009 | 1.4:+65374721 | MS.gene005097:CDS |
| ACAGAGCTTTCTGGTGAGGA+GGG | 0.543440 | 1.4:+65375463 | MS.gene005097:CDS |
| GCCGGTGGAAGAATATCACT+TGG | 0.543957 | 1.4:+65373969 | MS.gene005097:CDS |
| GTAAAGGCTCCTCCTAATGC+TGG | 0.544725 | 1.4:-65374893 | None:intergenic |
| AGAATACCTTGTGGCCATTG+TGG | 0.547018 | 1.4:-65373506 | None:intergenic |
| AAGAGCTGGGGATTCTGACT+CGG | 0.549133 | 1.4:-65374204 | None:intergenic |
| AGGACACGTTCTTGTCGCTC+GGG | 0.549143 | 1.4:+65374151 | MS.gene005097:CDS |
| AATTCTAACGGAAAGGCACT+AGG | 0.549895 | 1.4:+65374044 | MS.gene005097:CDS |
| AGACCTTTGGAGATTCCAGA+TGG | 0.551683 | 1.4:+65374080 | MS.gene005097:CDS |
| TTCCTTCACCTCTTCCACAA+TGG | 0.552183 | 1.4:+65373492 | MS.gene005097:CDS |
| GACTCCATCACCAAGATACT+CGG | 0.556847 | 1.4:-65375296 | None:intergenic |
| GGTGAAGTTGCTCACGCGAA+GGG | 0.560176 | 1.4:-65375032 | None:intergenic |
| CGTGAATCATATACAATGGT+AGG | 0.564534 | 1.4:-65375361 | None:intergenic |
| TCCAACAGAGCTTTCTGGTG+AGG | 0.565118 | 1.4:+65375459 | MS.gene005097:CDS |
| CAGCTTTATAACCCTTTGGA+GGG | 0.565388 | 1.4:-65374301 | None:intergenic |
| CGACAGATACACCTCTAGCT+AGG | 0.565938 | 1.4:-65374490 | None:intergenic |
| GCGAGAAATAATCATAAGAA+GGG | 0.567421 | 1.4:+65374833 | MS.gene005097:CDS |
| GACTCGGAACAATCAGCTTG+AGG | 0.567833 | 1.4:-65374188 | None:intergenic |
| TATACTGCGGGTAATGCAAA+GGG | 0.571900 | 1.4:+65374722 | MS.gene005097:CDS |
| CATGTAAAACCAGCATTAGG+AGG | 0.572269 | 1.4:+65374884 | MS.gene005097:CDS |
| AACATTGAGATGAACAAGAT+CGG | 0.572272 | 1.4:+65374980 | MS.gene005097:CDS |
| TCAGGATGAAAATATACAGT+TGG | 0.579056 | 1.4:-65374644 | None:intergenic |
| TGGAGATGCACAAATTCTAA+CGG | 0.580046 | 1.4:+65374032 | MS.gene005097:CDS |
| TGGTTGCCTAACCCTCCAAA+GGG | 0.582899 | 1.4:+65374290 | MS.gene005097:CDS |
| CTTCGCGTGAGCAACTTCAC+CGG | 0.582952 | 1.4:+65375034 | MS.gene005097:CDS |
| TCCAATGATCAGCCGTTGCG+AGG | 0.585934 | 1.4:+65374131 | MS.gene005097:CDS |
| GCCAACTGGTCCAAAGGAGA+AGG | 0.588714 | 1.4:+65375486 | MS.gene005097:CDS |
| GTGGCAGTAGTAACCAAGAC+AGG | 0.592567 | 1.4:-65374108 | None:intergenic |
| AAGGTTGTGTATTCCAAACC+TGG | 0.594362 | 1.4:-65374454 | None:intergenic |
| AATCCATCTGGAATCTCCAA+AGG | 0.594832 | 1.4:-65374083 | None:intergenic |
| ACATGCCATCATCGGTGTCG+TGG | 0.595421 | 1.4:+65374675 | MS.gene005097:CDS |
| CTCATATATTGCAACCAACA+TGG | 0.598495 | 1.4:-65375328 | None:intergenic |
| CCAAAGGGTTATAAAGCTGT+CGG | 0.598946 | 1.4:+65374305 | MS.gene005097:CDS |
| CCTCTTCCACAATGGCCACA+AGG | 0.602749 | 1.4:+65373500 | MS.gene005097:CDS |
| GGCACAAATTTACCTGGTGG+AGG | 0.603301 | 1.4:+65374764 | MS.gene005097:CDS |
| GGTTGCAATATATGAGAGAG+TGG | 0.604682 | 1.4:+65375335 | MS.gene005097:CDS |
| TGAGAAATACATGCCATCAT+CGG | 0.607689 | 1.4:+65374667 | MS.gene005097:CDS |
| TATCACGGCACAAATTTACC+TGG | 0.610377 | 1.4:+65374758 | MS.gene005097:CDS |
| AAGGAGAAGGACAATTGGCT+AGG | 0.611868 | 1.4:+65375499 | MS.gene005097:CDS |
| CTAGCTAGAGGTGTATCTGT+CGG | 0.614059 | 1.4:+65374491 | MS.gene005097:CDS |
| TAGTTTATTCATCAAGACAT+GGG | 0.614112 | 1.4:+65375146 | MS.gene005097:CDS |
| GGAGGGGCCAACTGGTCCAA+AGG | 0.615580 | 1.4:+65375480 | MS.gene005097:CDS |
| CCTGGTGGAGGATATAATGA+TGG | 0.615594 | 1.4:+65374776 | MS.gene005097:CDS |
| CAAGTTTGGATGATCCCTGA+AGG | 0.618933 | 1.4:-65375198 | None:intergenic |
| GGTAAAGCTATAGATTATCA+CGG | 0.619614 | 1.4:+65374743 | MS.gene005097:CDS |
| ATGCACAAATTCTAACGGAA+AGG | 0.619830 | 1.4:+65374037 | MS.gene005097:CDS |
| CCTTTACTGATATTGCAATG+TGG | 0.624376 | 1.4:+65374909 | MS.gene005097:CDS |
| CACGGCACAAATTTACCTGG+TGG | 0.625316 | 1.4:+65374761 | MS.gene005097:CDS |
| CCATCATTATATCCTCCACC+AGG | 0.627153 | 1.4:-65374776 | None:intergenic |
| GTTGCAATATATGAGAGAGT+GGG | 0.627285 | 1.4:+65375336 | MS.gene005097:CDS |
| GGCCATTGTGGAAGAGGTGA+AGG | 0.627997 | 1.4:-65373494 | None:intergenic |
| GCTGCCGAGTATCTTGGTGA+TGG | 0.635810 | 1.4:+65375292 | MS.gene005097:CDS |
| GAAGGGAAACATAGAGAGTG+CGG | 0.636222 | 1.4:+65374850 | MS.gene005097:CDS |
| TGAAGGTAAGTCCCTGCATG+AGG | 0.636865 | 1.4:-65375181 | None:intergenic |
| ATAGTTTATTCATCAAGACA+TGG | 0.637290 | 1.4:+65375145 | MS.gene005097:CDS |
| ACAAGAACGTGTCCTCGCAA+CGG | 0.637737 | 1.4:-65374143 | None:intergenic |
| TCTGTCGGAACATTCTTCTG+TGG | 0.649136 | 1.4:+65374506 | MS.gene005097:CDS |
| AACAAGATCGGTGAACATGT+CGG | 0.653405 | 1.4:+65374992 | MS.gene005097:CDS |
| CACTTGTTCAGAATCAAAGT+AGG | 0.653816 | 1.4:-65374531 | None:intergenic |
| AGAACGTGAATCATATACAA+TGG | 0.654517 | 1.4:-65375365 | None:intergenic |
| GCTAGGATACCTCTATCGCA+AGG | 0.655324 | 1.4:-65374473 | None:intergenic |
| ATGCTAGCTATCCTCATGCA+GGG | 0.655682 | 1.4:+65375170 | MS.gene005097:CDS |
| CAGAGCTTTCTGGTGAGGAG+GGG | 0.657357 | 1.4:+65375464 | MS.gene005097:CDS |
| CCGGTGGAAGAATATCACTT+GGG | 0.660476 | 1.4:+65373970 | MS.gene005097:CDS |
| GCAACGGCTGATCATTGGAG+TGG | 0.664542 | 1.4:-65374127 | None:intergenic |
| GAGTCATTACAGAACCATGT+TGG | 0.666649 | 1.4:+65375314 | MS.gene005097:CDS |
| TTGCAATATATGAGAGAGTG+GGG | 0.676061 | 1.4:+65375337 | MS.gene005097:CDS |
| GATAGAGGTATCCTAGCTAG+AGG | 0.677823 | 1.4:+65374479 | MS.gene005097:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATACTATTTGATTTCTTTT+TGG | + | chr1.4:65373848-65373867 | MS.gene005097:intron | 15.0% |
| !! | CACTTAATTACTCATTAATA+TGG | + | chr1.4:65374234-65374253 | MS.gene005097:CDS | 20.0% |
| !! | CATATTAATGAGTAATTAAG+TGG | - | chr1.4:65374236-65374255 | None:intergenic | 20.0% |
| !!! | ACTGTTTTCTTTCTATTTTT+TGG | + | chr1.4:65373579-65373598 | MS.gene005097:intron | 20.0% |
| !!! | GATCTTATTGTCATTAATTT+TGG | + | chr1.4:65373660-65373679 | MS.gene005097:intron | 20.0% |
| !!! | TGCTAAAAGTAATTTTATTC+TGG | + | chr1.4:65375243-65375262 | MS.gene005097:CDS | 20.0% |
| !!! | TTTGATTTCTTTTTGGTTAT+TGG | + | chr1.4:65373855-65373874 | MS.gene005097:intron | 20.0% |
| ! | AAGAAAAAAAGAATACCTTG+TGG | - | chr1.4:65373518-65373537 | None:intergenic | 25.0% |
| ! | ACAGAAAACCTAACAAATAT+TGG | - | chr1.4:65375418-65375437 | None:intergenic | 25.0% |
| ! | ATAGTTTATTCATCAAGACA+TGG | + | chr1.4:65375145-65375164 | MS.gene005097:CDS | 25.0% |
| ! | CTGTTGGAAATAATTCAAAA+AGG | - | chr1.4:65375447-65375466 | None:intergenic | 25.0% |
| ! | TAAACAAGTTTGAGAAAGTT+TGG | + | chr1.4:65374012-65374031 | MS.gene005097:CDS | 25.0% |
| ! | TAGTTTATTCATCAAGACAT+GGG | + | chr1.4:65375146-65375165 | MS.gene005097:CDS | 25.0% |
| ! | TGTCTTGATGAATAAACTAT+TGG | - | chr1.4:65375145-65375164 | None:intergenic | 25.0% |
| ! | TTACTCATTAATATGGTGTA+TGG | + | chr1.4:65374241-65374260 | MS.gene005097:CDS | 25.0% |
| !! | ATGATGAATGTGTTTACTTT+TGG | + | chr1.4:65374270-65374289 | MS.gene005097:CDS | 25.0% |
| !! | TTTTACGTTTTATAGACCTT+TGG | + | chr1.4:65374067-65374086 | MS.gene005097:CDS | 25.0% |
| !!! | AATATTTGTTAGGTTTTCTG+TGG | + | chr1.4:65375417-65375436 | MS.gene005097:CDS | 25.0% |
| !!! | ATTCGATTTGGAGTTTATTA+AGG | + | chr1.4:65375111-65375130 | MS.gene005097:CDS | 25.0% |
| !!! | GTAGTATTTTTTGCAGATAT+TGG | + | chr1.4:65373688-65373707 | MS.gene005097:intron | 25.0% |
| AACATTGAGATGAACAAGAT+CGG | + | chr1.4:65374980-65374999 | MS.gene005097:CDS | 30.0% | |
| ACATGCTTCCAATATTTGTT+AGG | + | chr1.4:65375407-65375426 | MS.gene005097:CDS | 30.0% | |
| AGAAAAATTCTTTCCAGGTT+TGG | + | chr1.4:65374441-65374460 | MS.gene005097:CDS | 30.0% | |
| AGAACGTGAATCATATACAA+TGG | - | chr1.4:65375368-65375387 | None:intergenic | 30.0% | |
| ATGCTCTTATTGAGCATTAT+GGG | + | chr1.4:65374621-65374640 | MS.gene005097:CDS | 30.0% | |
| CTTTACTGATATTGCAATGT+GGG | + | chr1.4:65374910-65374929 | MS.gene005097:CDS | 30.0% | |
| GCGAGAAATAATCATAAGAA+GGG | + | chr1.4:65374833-65374852 | MS.gene005097:CDS | 30.0% | |
| GGTAAAGCTATAGATTATCA+CGG | + | chr1.4:65374743-65374762 | MS.gene005097:CDS | 30.0% | |
| GTTCATCAATGACACTTTAA+GGG | - | chr1.4:65374963-65374982 | None:intergenic | 30.0% | |
| TCAGGATGAAAATATACAGT+TGG | - | chr1.4:65374647-65374666 | None:intergenic | 30.0% | |
| TGCGAGAAATAATCATAAGA+AGG | + | chr1.4:65374832-65374851 | MS.gene005097:CDS | 30.0% | |
| TGTTCATCAATGACACTTTA+AGG | - | chr1.4:65374964-65374983 | None:intergenic | 30.0% | |
| ! | ATTATTTCTCGCATCTTCAT+TGG | - | chr1.4:65374825-65374844 | None:intergenic | 30.0% |
| ! | CTTTATTGCATATTTTGCTG+TGG | + | chr1.4:65373773-65373792 | MS.gene005097:intron | 30.0% |
| AGTTTGTGAATGATCTACTC+AGG | + | chr1.4:65373936-65373955 | MS.gene005097:intron | 35.0% | |
| ATGCACAAATTCTAACGGAA+AGG | + | chr1.4:65374037-65374056 | MS.gene005097:CDS | 35.0% | |
| CACTTGTTCAGAATCAAAGT+AGG | - | chr1.4:65374534-65374553 | None:intergenic | 35.0% | |
| CATCGAACTTCTTCAACTTT+CGG | - | chr1.4:65374359-65374378 | None:intergenic | 35.0% | |
| CATGCTCTTATTGAGCATTA+TGG | + | chr1.4:65374620-65374639 | MS.gene005097:CDS | 35.0% | |
| CCACATTGCAATATCAGTAA+AGG | - | chr1.4:65374912-65374931 | None:intergenic | 35.0% | |
| CCTTTACTGATATTGCAATG+TGG | + | chr1.4:65374909-65374928 | MS.gene005097:CDS | 35.0% | |
| CGTGAATCATATACAATGGT+AGG | - | chr1.4:65375364-65375383 | None:intergenic | 35.0% | |
| CTACTTTGATTCTGAACAAG+TGG | + | chr1.4:65374532-65374551 | MS.gene005097:CDS | 35.0% | |
| CTCATATATTGCAACCAACA+TGG | - | chr1.4:65375331-65375350 | None:intergenic | 35.0% | |
| GTCGAAGAAAAATTCTTTCC+AGG | + | chr1.4:65374436-65374455 | MS.gene005097:CDS | 35.0% | |
| GTTCATGTAAAACCAGCATT+AGG | + | chr1.4:65374881-65374900 | MS.gene005097:CDS | 35.0% | |
| GTTGCAATATATGAGAGAGT+GGG | + | chr1.4:65375336-65375355 | MS.gene005097:CDS | 35.0% | |
| TGAGAAATACATGCCATCAT+CGG | + | chr1.4:65374667-65374686 | MS.gene005097:CDS | 35.0% | |
| TGGAGATGCACAAATTCTAA+CGG | + | chr1.4:65374032-65374051 | MS.gene005097:CDS | 35.0% | |
| TTATTTCCAACAGAGCTTTC+TGG | + | chr1.4:65375454-65375473 | MS.gene005097:CDS | 35.0% | |
| TTGCAATATATGAGAGAGTG+GGG | + | chr1.4:65375337-65375356 | MS.gene005097:CDS | 35.0% | |
| ! | ATGGGTTAATGCATTCGATT+TGG | + | chr1.4:65375099-65375118 | MS.gene005097:CDS | 35.0% |
| ! | TGGAGCAATTTTGTATACTG+CGG | + | chr1.4:65374709-65374728 | MS.gene005097:CDS | 35.0% |
| !! | GATATAATGATGGTGCGTTT+TGG | + | chr1.4:65374786-65374805 | MS.gene005097:CDS | 35.0% |
| !! | TAAGTGGCTTTTTAAGAGCT+GGG | - | chr1.4:65374220-65374239 | None:intergenic | 35.0% |
| !! | TTAAGTGGCTTTTTAAGAGC+TGG | - | chr1.4:65374221-65374240 | None:intergenic | 35.0% |
| AAAAACAGACCAAAGCTCTC+CGG | - | chr1.4:65375056-65375075 | None:intergenic | 40.0% | |
| AACAAGATCGGTGAACATGT+CGG | + | chr1.4:65374992-65375011 | MS.gene005097:CDS | 40.0% | |
| AACTTTCGGTTCATCTGGAT+TGG | - | chr1.4:65374345-65374364 | None:intergenic | 40.0% | |
| AAGAGGTGAAGGAAGAGAAA+AGG | - | chr1.4:65373486-65373505 | None:intergenic | 40.0% | |
| AAGGTTGTGTATTCCAAACC+TGG | - | chr1.4:65374457-65374476 | None:intergenic | 40.0% | |
| AATACACAACCTTGCGATAG+AGG | + | chr1.4:65374464-65374483 | MS.gene005097:CDS | 40.0% | |
| AGAGGTGAAGGAAGAGAAAA+GGG | - | chr1.4:65373485-65373504 | None:intergenic | 40.0% | |
| CATGTAAAACCAGCATTAGG+AGG | + | chr1.4:65374884-65374903 | MS.gene005097:CDS | 40.0% | |
| CCAAAGGGTTATAAAGCTGT+CGG | + | chr1.4:65374305-65374324 | MS.gene005097:CDS | 40.0% | |
| CTCGCAAACTTCTGTTAGAT+CGG | - | chr1.4:65374390-65374409 | None:intergenic | 40.0% | |
| GAGTCATTACAGAACCATGT+TGG | + | chr1.4:65375314-65375333 | MS.gene005097:CDS | 40.0% | |
| GATCAGCGTCAAAGAATTCT+GGG | - | chr1.4:65373457-65373476 | None:intergenic | 40.0% | |
| GATGGCATGTATTTCTCATC+AGG | - | chr1.4:65374665-65374684 | None:intergenic | 40.0% | |
| GCATGAATCTGGTTGAGATT+CGG | - | chr1.4:65374605-65374624 | None:intergenic | 40.0% | |
| GGATCATCCAAACTTGGAAT+AGG | + | chr1.4:65375205-65375224 | MS.gene005097:CDS | 40.0% | |
| GGTTGCAATATATGAGAGAG+TGG | + | chr1.4:65375335-65375354 | MS.gene005097:CDS | 40.0% | |
| TATACTGCGGGTAATGCAAA+GGG | + | chr1.4:65374722-65374741 | MS.gene005097:CDS | 40.0% | |
| TATCACGGCACAAATTTACC+TGG | + | chr1.4:65374758-65374777 | MS.gene005097:CDS | 40.0% | |
| TCTTCAACTTTCGGTTCATC+TGG | - | chr1.4:65374350-65374369 | None:intergenic | 40.0% | |
| TTGTGAATGATCTACTCAGG+TGG | + | chr1.4:65373939-65373958 | MS.gene005097:intron | 40.0% | |
| TTTCTCGCATCTTCATTGGT+AGG | - | chr1.4:65374821-65374840 | None:intergenic | 40.0% | |
| ! | AATCCATCTGGAATCTCCAA+AGG | - | chr1.4:65374086-65374105 | None:intergenic | 40.0% |
| ! | AATGACACTTTAAGGGTTGC+AGG | - | chr1.4:65374956-65374975 | None:intergenic | 40.0% |
| ! | ACAGCTTTATAACCCTTTGG+AGG | - | chr1.4:65374305-65374324 | None:intergenic | 40.0% |
| ! | CAGCTTTATAACCCTTTGGA+GGG | - | chr1.4:65374304-65374323 | None:intergenic | 40.0% |
| ! | GCTCAATAAGAGCATGAATC+TGG | - | chr1.4:65374616-65374635 | None:intergenic | 40.0% |
| ! | GGAGCAATTTTGTATACTGC+GGG | + | chr1.4:65374710-65374729 | MS.gene005097:CDS | 40.0% |
| ! | TTATAACCCTTTGGAGGGTT+AGG | - | chr1.4:65374299-65374318 | None:intergenic | 40.0% |
| !! | AAGTGGCTTTTTAAGAGCTG+GGG | - | chr1.4:65374219-65374238 | None:intergenic | 40.0% |
| !! | AATTCTAACGGAAAGGCACT+AGG | + | chr1.4:65374044-65374063 | MS.gene005097:CDS | 40.0% |
| !! | TGGTTGCGAGTGTTTTTGTT+GGG | + | chr1.4:65373424-65373443 | MS.gene005097:CDS | 40.0% |
| !! | TTGGTTGCGAGTGTTTTTGT+TGG | + | chr1.4:65373423-65373442 | MS.gene005097:CDS | 40.0% |
| !!! | GTGTCGTGGTTTTTCAAGAA+TGG | + | chr1.4:65374689-65374708 | MS.gene005097:CDS | 40.0% |
| !!! | GTTTTTTTCTCTGAGCACAG+TGG | + | chr1.4:65375070-65375089 | MS.gene005097:CDS | 40.0% |
| !!! | TGGGTTTTTTGCCCATTCAA+TGG | + | chr1.4:65374929-65374948 | MS.gene005097:CDS | 40.0% |
| AAAAACCACGACACCGATGA+TGG | - | chr1.4:65374683-65374702 | None:intergenic | 45.0% | |
| AAGGAGAAGGACAATTGGCT+AGG | + | chr1.4:65375499-65375518 | MS.gene005097:CDS | 45.0% | |
| AGAATACCTTGTGGCCATTG+TGG | - | chr1.4:65373509-65373528 | None:intergenic | 45.0% | |
| AGCCAATTGTCCTTCTCCTT+TGG | - | chr1.4:65375499-65375518 | None:intergenic | 45.0% | |
| ATGCTAGCTATCCTCATGCA+GGG | + | chr1.4:65375170-65375189 | MS.gene005097:CDS | 45.0% | |
| ATTGTTGCTGCCGAGTATCT+TGG | + | chr1.4:65375286-65375305 | MS.gene005097:CDS | 45.0% | |
| CAAGTTTGGATGATCCCTGA+AGG | - | chr1.4:65375201-65375220 | None:intergenic | 45.0% | |
| CCAAGACAGGAAAATCCATC+TGG | - | chr1.4:65374098-65374117 | None:intergenic | 45.0% | |
| CCATCATTATATCCTCCACC+AGG | - | chr1.4:65374779-65374798 | None:intergenic | 45.0% | |
| CCCAAGTGATATTCTTCCAC+CGG | - | chr1.4:65373973-65373992 | None:intergenic | 45.0% | |
| CCGGTGGAAGAATATCACTT+GGG | + | chr1.4:65373970-65373989 | MS.gene005097:CDS | 45.0% | |
| CCTGGTGGAGGATATAATGA+TGG | + | chr1.4:65374776-65374795 | MS.gene005097:CDS | 45.0% | |
| CTTCAGGGATCATCCAAACT+TGG | + | chr1.4:65375199-65375218 | MS.gene005097:CDS | 45.0% | |
| GAAGGAAGAGAAAAGGGAAG+TGG | - | chr1.4:65373479-65373498 | None:intergenic | 45.0% | |
| GAAGGGAAACATAGAGAGTG+CGG | + | chr1.4:65374850-65374869 | MS.gene005097:CDS | 45.0% | |
| GACTCCATCACCAAGATACT+CGG | - | chr1.4:65375299-65375318 | None:intergenic | 45.0% | |
| GCGAACTCCTATTCCAAGTT+TGG | - | chr1.4:65375215-65375234 | None:intergenic | 45.0% | |
| GGATCAGCGTCAAAGAATTC+TGG | - | chr1.4:65373458-65373477 | None:intergenic | 45.0% | |
| GTATACTGCGGGTAATGCAA+AGG | + | chr1.4:65374721-65374740 | MS.gene005097:CDS | 45.0% | |
| GTCCAAAGGAGAAGGACAAT+TGG | + | chr1.4:65375494-65375513 | MS.gene005097:CDS | 45.0% | |
| TCTGTCGGAACATTCTTCTG+TGG | + | chr1.4:65374506-65374525 | MS.gene005097:CDS | 45.0% | |
| TGAATGATCTACTCAGGTGG+CGG | + | chr1.4:65373942-65373961 | MS.gene005097:intron | 45.0% | |
| TGAGCACAGTGGAGGTAAAT+GGG | + | chr1.4:65375081-65375100 | MS.gene005097:CDS | 45.0% | |
| TTCCTTCACCTCTTCCACAA+TGG | + | chr1.4:65373492-65373511 | MS.gene005097:CDS | 45.0% | |
| ! | AGACCTTTGGAGATTCCAGA+TGG | + | chr1.4:65374080-65374099 | MS.gene005097:CDS | 45.0% |
| ! | CCGACAGCTTTATAACCCTT+TGG | - | chr1.4:65374308-65374327 | None:intergenic | 45.0% |
| ! | CTAGCTAGAGGTGTATCTGT+CGG | + | chr1.4:65374491-65374510 | MS.gene005097:CDS | 45.0% |
| ! | TTTCGGTTCATCTGGATTGG+TGG | - | chr1.4:65374342-65374361 | None:intergenic | 45.0% |
| ! | TTTTTCTCTGAGCACAGTGG+AGG | + | chr1.4:65375073-65375092 | MS.gene005097:CDS | 45.0% |
| !! | CCAGATGGATTTTCCTGTCT+TGG | + | chr1.4:65374095-65374114 | MS.gene005097:CDS | 45.0% |
| !! | GATAGAGGTATCCTAGCTAG+AGG | + | chr1.4:65374479-65374498 | MS.gene005097:CDS | 45.0% |
| AAGAGCTGGGGATTCTGACT+CGG | - | chr1.4:65374207-65374226 | None:intergenic | 50.0% | |
| ACAAGAACGTGTCCTCGCAA+CGG | - | chr1.4:65374146-65374165 | None:intergenic | 50.0% | |
| AGGGTTGCAGGTCCATTGAA+TGG | - | chr1.4:65374944-65374963 | None:intergenic | 50.0% | |
| CACGGCACAAATTTACCTGG+TGG | + | chr1.4:65374761-65374780 | MS.gene005097:CDS | 50.0% | |
| CATGCAGGGACTTACCTTCA+GGG | + | chr1.4:65375184-65375203 | MS.gene005097:CDS | 50.0% | |
| CATGCTAGCTATCCTCATGC+AGG | + | chr1.4:65375169-65375188 | MS.gene005097:CDS | 50.0% | |
| CGACAGATACACCTCTAGCT+AGG | - | chr1.4:65374493-65374512 | None:intergenic | 50.0% | |
| CGGTGAACATGTCGGTGATT+GGG | + | chr1.4:65375000-65375019 | MS.gene005097:CDS | 50.0% | |
| CTGAGCACAGTGGAGGTAAA+TGG | + | chr1.4:65375080-65375099 | MS.gene005097:CDS | 50.0% | |
| GACTCGGAACAATCAGCTTG+AGG | - | chr1.4:65374191-65374210 | None:intergenic | 50.0% | |
| GCCGGTGGAAGAATATCACT+TGG | + | chr1.4:65373969-65373988 | MS.gene005097:CDS | 50.0% | |
| GCTAGGATACCTCTATCGCA+AGG | - | chr1.4:65374476-65374495 | None:intergenic | 50.0% | |
| GGCACAAATTTACCTGGTGG+AGG | + | chr1.4:65374764-65374783 | MS.gene005097:CDS | 50.0% | |
| GGGTTGCAGGTCCATTGAAT+GGG | - | chr1.4:65374943-65374962 | None:intergenic | 50.0% | |
| GTAAAGGCTCCTCCTAATGC+TGG | - | chr1.4:65374896-65374915 | None:intergenic | 50.0% | |
| GTGGCAGTAGTAACCAAGAC+AGG | - | chr1.4:65374111-65374130 | None:intergenic | 50.0% | |
| TCATGCAGGGACTTACCTTC+AGG | + | chr1.4:65375183-65375202 | MS.gene005097:CDS | 50.0% | |
| TCCTCACCAGAAAGCTCTGT+TGG | - | chr1.4:65375463-65375482 | None:intergenic | 50.0% | |
| TCCTTCTCCTTTGGACCAGT+TGG | - | chr1.4:65375490-65375509 | None:intergenic | 50.0% | |
| TCGGTGAACATGTCGGTGAT+TGG | + | chr1.4:65374999-65375018 | MS.gene005097:CDS | 50.0% | |
| TGAAGGTAAGTCCCTGCATG+AGG | - | chr1.4:65375184-65375203 | None:intergenic | 50.0% | |
| TGGTTGCCTAACCCTCCAAA+GGG | + | chr1.4:65374290-65374309 | MS.gene005097:CDS | 50.0% | |
| TTGGTTGCCTAACCCTCCAA+AGG | + | chr1.4:65374289-65374308 | MS.gene005097:CDS | 50.0% | |
| ! | AACAGAGCTTTCTGGTGAGG+AGG | + | chr1.4:65375462-65375481 | MS.gene005097:CDS | 50.0% |
| ! | ACAGAGCTTTCTGGTGAGGA+GGG | + | chr1.4:65375463-65375482 | MS.gene005097:CDS | 50.0% |
| ! | TCCAACAGAGCTTTCTGGTG+AGG | + | chr1.4:65375459-65375478 | MS.gene005097:CDS | 50.0% |
| AGGACACGTTCTTGTCGCTC+GGG | + | chr1.4:65374151-65374170 | MS.gene005097:CDS | 55.0% | |
| CCTCTTCCACAATGGCCACA+AGG | + | chr1.4:65373500-65373519 | MS.gene005097:CDS | 55.0% | |
| CCTTGTGGCCATTGTGGAAG+AGG | - | chr1.4:65373503-65373522 | None:intergenic | 55.0% | |
| CTTCGCGTGAGCAACTTCAC+CGG | + | chr1.4:65375034-65375053 | MS.gene005097:CDS | 55.0% | |
| GAGGACACGTTCTTGTCGCT+CGG | + | chr1.4:65374150-65374169 | MS.gene005097:CDS | 55.0% | |
| GCAACGGCTGATCATTGGAG+TGG | - | chr1.4:65374130-65374149 | None:intergenic | 55.0% | |
| GCAACTTCACCGGAGAGCTT+TGG | + | chr1.4:65375044-65375063 | MS.gene005097:CDS | 55.0% | |
| GCCAACTGGTCCAAAGGAGA+AGG | + | chr1.4:65375486-65375505 | MS.gene005097:CDS | 55.0% | |
| GCTGCCGAGTATCTTGGTGA+TGG | + | chr1.4:65375292-65375311 | MS.gene005097:CDS | 55.0% | |
| GGCCATTGTGGAAGAGGTGA+AGG | - | chr1.4:65373497-65373516 | None:intergenic | 55.0% | |
| GGTGAAGTTGCTCACGCGAA+GGG | - | chr1.4:65375035-65375054 | None:intergenic | 55.0% | |
| TCCAATGATCAGCCGTTGCG+AGG | + | chr1.4:65374131-65374150 | MS.gene005097:CDS | 55.0% | |
| TCCTCGCAACGGCTGATCAT+TGG | - | chr1.4:65374135-65374154 | None:intergenic | 55.0% | |
| ! | CAGAGCTTTCTGGTGAGGAG+GGG | + | chr1.4:65375464-65375483 | MS.gene005097:CDS | 55.0% |
| !! | ACATGCCATCATCGGTGTCG+TGG | + | chr1.4:65374675-65374694 | MS.gene005097:CDS | 55.0% |
| !! | TACTCAGGTGGCGGTTTTGC+CGG | + | chr1.4:65373951-65373970 | MS.gene005097:intron | 55.0% |
| CGGTGAAGTTGCTCACGCGA+AGG | - | chr1.4:65375036-65375055 | None:intergenic | 60.0% | |
| GGAGGGGCCAACTGGTCCAA+AGG | + | chr1.4:65375480-65375499 | MS.gene005097:CDS | 65.0% | |
| TCTGGTGAGGAGGGGCCAAC+TGG | + | chr1.4:65375472-65375491 | MS.gene005097:CDS | 65.0% | |
| !! | TCAGGTGGCGGTTTTGCCGG+TGG | + | chr1.4:65373954-65373973 | MS.gene005097:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 65373419 | 65375537 | 65373419 | ID=MS.gene005097 |
| chr1.4 | mRNA | 65373419 | 65375537 | 65373419 | ID=MS.gene005097.t1;Parent=MS.gene005097 |
| chr1.4 | exon | 65373419 | 65373521 | 65373419 | ID=MS.gene005097.t1.exon1;Parent=MS.gene005097.t1 |
| chr1.4 | CDS | 65373419 | 65373521 | 65373419 | ID=cds.MS.gene005097.t1;Parent=MS.gene005097.t1 |
| chr1.4 | exon | 65373958 | 65375537 | 65373958 | ID=MS.gene005097.t1.exon2;Parent=MS.gene005097.t1 |
| chr1.4 | CDS | 65373958 | 65375537 | 65373958 | ID=cds.MS.gene005097.t1;Parent=MS.gene005097.t1 |
| Gene Sequence |
| Protein sequence |
