AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene006203

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene006203.t1 MTR_1g099360 97.409 579 12 1 1 579 1 576 0.0 1171
MS.gene006203.t1 MTR_6g034195 84.749 577 83 3 1 575 1 574 0.0 1007
MS.gene006203.t1 MTR_5g014140 74.735 471 119 0 105 575 76 546 0.0 738
MS.gene006203.t1 MTR_5g014140 81.962 316 57 0 105 420 76 391 0.0 541
MS.gene006203.t1 MTR_1g076540 45.912 477 236 7 106 561 89 564 5.56e-128 387
MS.gene006203.t1 MTR_1g105965 41.273 487 267 9 106 575 90 574 2.66e-114 352
MS.gene006203.t1 MTR_6g004020 37.083 480 259 12 107 551 21 492 4.67e-85 274
MS.gene006203.t1 MTR_4g083340 36.458 480 262 11 107 551 8 479 5.25e-85 273
MS.gene006203.t1 MTR_7g100760 35.197 483 264 12 107 551 11 482 1.20e-81 265
MS.gene006203.t1 MTR_1g105965 45.066 304 156 5 106 399 90 392 1.42e-79 256
MS.gene006203.t1 MTR_4g083330 33.264 484 253 11 107 555 11 459 5.32e-73 241
MS.gene006203.t1 MTR_1g091040 27.572 486 310 15 108 555 30 511 1.23e-43 163
MS.gene006203.t1 MTR_1g105965 39.906 213 118 4 106 309 90 301 4.84e-43 156
MS.gene006203.t1 MTR_7g103420 26.749 486 315 13 108 555 30 512 2.30e-42 160
MS.gene006203.t1 MTR_7g103420 26.600 500 313 13 108 555 30 527 8.09e-42 158
MS.gene006203.t1 MTR_1g061630 28.362 409 248 11 108 494 30 415 3.26e-40 153
MS.gene006203.t1 MTR_1g061630 28.224 411 262 11 108 494 30 431 3.70e-40 154
MS.gene006203.t1 MTR_7g103420 25.647 425 276 12 169 555 1 423 9.67e-31 125
MS.gene006203.t1 MTR_1g091040 28.011 357 226 11 227 555 25 378 1.17e-28 118
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene006203.t1 AT5G52920 79.102 579 117 1 1 575 1 579 0.0 955
MS.gene006203.t1 AT1G32440 76.858 471 108 1 105 575 98 567 0.0 759
MS.gene006203.t1 AT3G22960 47.158 475 231 7 106 561 117 590 1.04e-130 395
MS.gene006203.t1 AT3G55650 34.765 489 284 9 96 551 6 492 4.50e-86 276
MS.gene006203.t1 AT3G25960 35.565 478 282 9 96 551 6 479 2.67e-85 274
MS.gene006203.t1 AT5G56350 35.341 498 274 14 105 564 7 494 1.17e-83 270
MS.gene006203.t1 AT5G63680 37.342 474 266 11 107 551 21 492 2.41e-83 270
MS.gene006203.t1 AT5G63680 37.342 474 266 11 107 551 21 492 2.41e-83 270
MS.gene006203.t1 AT5G63680 37.342 474 266 11 107 551 21 492 2.41e-83 270
MS.gene006203.t1 AT3G04050 34.511 481 280 10 104 551 14 492 4.75e-83 269
MS.gene006203.t1 AT4G26390 35.404 483 280 10 105 557 6 486 1.39e-82 267
MS.gene006203.t1 AT5G08570 36.842 475 267 12 107 551 21 492 1.57e-82 267
MS.gene006203.t1 AT5G08570 36.842 475 267 12 107 551 21 492 1.57e-82 267
MS.gene006203.t1 AT5G08570 36.842 475 267 12 107 551 21 492 1.57e-82 267
MS.gene006203.t1 AT3G55810 32.515 489 277 10 96 551 6 474 1.65e-71 238
MS.gene006203.t1 AT2G36580 28.279 488 305 14 108 555 30 512 5.99e-46 170
MS.gene006203.t1 AT3G52990 27.869 488 307 14 108 555 30 512 4.06e-44 165
MS.gene006203.t1 AT3G52990 27.155 464 293 14 132 555 1 459 3.07e-38 147
MS.gene006203.t1 AT3G49160 29.258 229 144 6 215 432 473 694 7.92e-19 90.9
MS.gene006203.t1 AT3G49160 29.258 229 144 6 215 432 385 606 8.72e-19 90.5

Find 152 sgRNAs with CRISPR-Local

Find 306 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAACAAGTTGGTAATGTTTC+TGG 0.172900 1.4:-77315350 MS.gene006203:CDS
TCCGATGGAATAATGCTTTC+TGG 0.190585 1.4:-77313200 MS.gene006203:CDS
AGACTTAGGTGGGAAGATTT+TGG 0.208282 1.4:+77315651 None:intergenic
GATTGGGATGACATCAAATT+TGG 0.216798 1.4:-77313993 MS.gene006203:CDS
ACTAAGATTGTTTGTACTAT+TGG 0.260506 1.4:-77315293 MS.gene006203:CDS
CTGATCAGTAAAAGCAAATA+TGG 0.278721 1.4:+77312599 None:intergenic
TTGAATACTTGGCCAATATT+AGG 0.283361 1.4:+77312888 None:intergenic
ATTACTTTCGCAGCTTTAAT+TGG 0.294022 1.4:+77312963 None:intergenic
TCAGAGAATTCCATGTAAAT+AGG 0.315231 1.4:+77312156 None:intergenic
CCATTCCACTCACAATATTC+AGG 0.322453 1.4:-77311630 MS.gene006203:CDS
ATCGATAACTTCGCATTTCA+CGG 0.329487 1.4:+77314243 None:intergenic
TCATAAGAAAGTTATTGATT+TGG 0.344192 1.4:-77315177 MS.gene006203:CDS
ATTTCCTTTGTATTAGTAGA+AGG 0.347373 1.4:+77315269 None:intergenic
AAAAGCCTTGGATTTGTTGC+AGG 0.348377 1.4:-77312112 MS.gene006203:intron
CTAATACAAAGGAAATGATT+TGG 0.354416 1.4:-77315262 MS.gene006203:CDS
CAATGCAGGAAGAGATAATA+AGG 0.366508 1.4:-77313343 MS.gene006203:intron
GAATCATCTTCGGGTGATAC+AGG 0.367392 1.4:+77315556 None:intergenic
TGGTGCCTGCAGGTCGATAA+TGG 0.377025 1.4:+77312619 None:intergenic
CTTCACTAGATCGGGTTTCA+TGG 0.377434 1.4:-77312655 MS.gene006203:CDS
AAAAGCGGAACCTCCTCAAT+AGG 0.380743 1.4:+77313483 None:intergenic
CGGAGACATTTGAATGTTAG+AGG 0.383246 1.4:-77314202 MS.gene006203:CDS
GGATAGTAAAAGTGAATTCC+TGG 0.383564 1.4:+77314933 None:intergenic
CATACTTTCCAGCATATTTG+TGG 0.385316 1.4:+77313286 None:intergenic
TCCCTCTTACGACCCACTTC+AGG 0.386910 1.4:-77315724 MS.gene006203:CDS
ACAAACCTTTGAATCATCTT+CGG 0.386930 1.4:+77315546 None:intergenic
CTATGCCGTTTCTTTCGTTA+AGG 0.387859 1.4:-77313949 MS.gene006203:CDS
ACCTCTGCTCTGGTTGGCGT+GGG 0.401155 1.4:+77313254 None:intergenic
TGAGGACTTTCTTGCATTGA+TGG 0.402280 1.4:+77315594 None:intergenic
ATTTGGAAACTTGCTGAGGC+TGG 0.403880 1.4:-77315245 MS.gene006203:CDS
AACTGTTGTCTTCACTAGAT+CGG 0.404661 1.4:-77312664 MS.gene006203:CDS
TGTATAGATTGAGGCGGAGT+TGG 0.408751 1.4:-77315390 MS.gene006203:intron
ACTGTTGTCTTCACTAGATC+GGG 0.416610 1.4:-77312663 MS.gene006203:CDS
CAAACCTTTGAATCATCTTC+GGG 0.417561 1.4:+77315547 None:intergenic
GAGGTTGTGAAGCAAAGCTT+GGG 0.419629 1.4:+77315619 None:intergenic
GGGCAGATGCCACCTAATAT+TGG 0.424869 1.4:-77312900 MS.gene006203:CDS
AAAGTGGAAGGCAACCTATA+TGG 0.425350 1.4:-77311658 MS.gene006203:CDS
CAGAGGTTGGCTTTGTATCA+AGG 0.427960 1.4:-77312186 MS.gene006203:CDS
TTTCACGGAATCCGCTGTCT+TGG 0.428216 1.4:+77314258 None:intergenic
AAGTTTAGACCTTGAATACT+TGG 0.428867 1.4:+77312877 None:intergenic
ATTTGTTGCAGAAAAGGATT+GGG 0.432529 1.4:-77314009 MS.gene006203:intron
TTAGTCTTTCTTCTAACCAT+TGG 0.438719 1.4:+77315311 None:intergenic
ATGTCTCAGGTTGCAACCAC+TGG 0.442324 1.4:-77315760 MS.gene006203:CDS
TGTTTCCATATGCAGAAGAA+TGG 0.453443 1.4:-77311716 MS.gene006203:intron
AATTTGTTGCAGAAAAGGAT+TGG 0.453541 1.4:-77314010 MS.gene006203:intron
GTTGCCTTCCACTTTGTACA+AGG 0.457075 1.4:+77311666 None:intergenic
TCAATTATTACTGCATCTGA+TGG 0.461675 1.4:-77313714 MS.gene006203:CDS
TCTCTCTACTACAATGTCTC+AGG 0.466077 1.4:-77315773 None:intergenic
AATTTGTGGCGGCTACTGTT+CGG 0.466689 1.4:+77311606 None:intergenic
TAATATTGGCCAAGTATTCA+AGG 0.466771 1.4:-77312886 MS.gene006203:intron
TTTGTCAATGATGTCGAAGA+AGG 0.468350 1.4:-77314863 MS.gene006203:CDS
AGGTGGTATGATGTCCTTCT+TGG 0.469108 1.4:-77314287 MS.gene006203:CDS
GTAATAATTGAATGCAAGTT+CGG 0.469193 1.4:+77313726 None:intergenic
CATATTTGTGGCTACAATAA+CGG 0.474034 1.4:+77313298 None:intergenic
TGAGGTTGTGAAGCAAAGCT+TGG 0.480438 1.4:+77315618 None:intergenic
ATGGTTGCAAGAGGAGATCT+TGG 0.484762 1.4:-77313516 MS.gene006203:CDS
TAATGCACACCGTAGCATTA+CGG 0.486804 1.4:-77312944 MS.gene006203:CDS
GGGGACATGCTTCTTGTTGA+CGG 0.487278 1.4:-77314842 MS.gene006203:intron
TCCAAGGGTATTAGACATCA+TGG 0.487729 1.4:+77312692 None:intergenic
AGAGACATTCACAAAAGCCT+TGG 0.488109 1.4:-77312124 MS.gene006203:CDS
TCGTAAGAGGGAGGTTTGAA+TGG 0.491999 1.4:+77315735 None:intergenic
AAAGTCTAACCAGTGATTGA+AGG 0.493534 1.4:+77314163 None:intergenic
CAATTATTACTGCATCTGAT+GGG 0.495858 1.4:-77313713 MS.gene006203:CDS
TACCTCTGCTCTGGTTGGCG+TGG 0.497055 1.4:+77313253 None:intergenic
AAAGCGGAACCTCCTCAATA+GGG 0.498685 1.4:+77313484 None:intergenic
AGAGGTTGAAACTTAATTTG+TGG 0.499961 1.4:+77311592 None:intergenic
AAGAATGGAATGGTTAAAGA+AGG 0.500527 1.4:-77311701 MS.gene006203:CDS
TCCAGAAAGCATTATTCCAT+CGG 0.500745 1.4:+77313199 None:intergenic
TATTGTAGCCACAAATATGC+TGG 0.504931 1.4:-77313294 MS.gene006203:CDS
CTTTCTTGCATTGATGGGTG+AGG 0.505320 1.4:+77315600 None:intergenic
GGGTCCTGAGGTTAGGAGTG+GGG 0.506757 1.4:-77314987 MS.gene006203:CDS
CAGAGTGGCGTTGGAACTGC+TGG 0.507274 1.4:-77314911 MS.gene006203:CDS
ACCATGATGTCTAATACCCT+TGG 0.514111 1.4:-77312693 MS.gene006203:CDS
TTTACTATCCAGAGTGGCGT+TGG 0.515163 1.4:-77314920 MS.gene006203:CDS
ATCCTGAAGTGGGTCGTAAG+AGG 0.515645 1.4:+77315722 None:intergenic
GAAAGTTATTGATTTGGTCA+AGG 0.519341 1.4:-77315171 MS.gene006203:CDS
GCAACACTGCCTTCAATCAC+TGG 0.520688 1.4:-77314172 MS.gene006203:intron
TTGGTGGCCATGCAGGAAAA+GGG 0.523975 1.4:-77312214 MS.gene006203:intron
TGCAATTATGCTTGACACCA+AGG 0.524078 1.4:-77315117 MS.gene006203:intron
TCCTGAAGTGGGTCGTAAGA+GGG 0.525049 1.4:+77315723 None:intergenic
AATATCAGATACCTCTGCTC+TGG 0.526914 1.4:+77313244 None:intergenic
GGGGATTGTTAGACTTAGGT+GGG 0.527984 1.4:+77315641 None:intergenic
GTGGAATGGAACCTCCATAT+AGG 0.530502 1.4:+77311644 None:intergenic
TGCATCCTTAACGAAAGAAA+CGG 0.532070 1.4:+77313944 None:intergenic
GAAGTAGCCCTTGTACAAAG+TGG 0.532110 1.4:-77311674 MS.gene006203:CDS
AGGGTCCTGAGGTTAGGAGT+GGG 0.537150 1.4:-77314988 MS.gene006203:CDS
CAGCAGTTCCAACGCCACTC+TGG 0.538986 1.4:+77314912 None:intergenic
TTGAGCCATTATCGACCTGC+AGG 0.540869 1.4:-77312624 MS.gene006203:CDS
AATAAGGATATGCCGTAGCA+TGG 0.541078 1.4:-77313327 MS.gene006203:CDS
AGGTGTCTGTCCTATTTACA+TGG 0.542712 1.4:-77312166 MS.gene006203:CDS
AAAGCAAATATGGTGCCTGC+AGG 0.543058 1.4:+77312609 None:intergenic
TTAGGTGGCATCTGCCCACT+TGG 0.546105 1.4:+77312906 None:intergenic
TTGTCAATGATGTCGAAGAA+GGG 0.547334 1.4:-77314862 MS.gene006203:CDS
TAGGGTCCTGAGGTTAGGAG+TGG 0.547849 1.4:-77314989 MS.gene006203:CDS
GAAAAGGGTACAACAGAGGT+TGG 0.552967 1.4:-77312199 MS.gene006203:CDS
ATTGCAATTGCTGTTCGAGA+AGG 0.562992 1.4:-77313224 MS.gene006203:CDS
GGCTTCTGTCCGTAATGCTA+CGG 0.565887 1.4:+77312935 None:intergenic
TGGTCCTTCTACTAATACAA+AGG 0.568271 1.4:-77315273 MS.gene006203:CDS
AAATCCCCACTCCTAACCTC+AGG 0.568605 1.4:+77314983 None:intergenic
AGACAACAGTTGAAGTTCCA+AGG 0.570123 1.4:+77312676 None:intergenic
TATTAGACATCATGGTTGCA+TGG 0.573097 1.4:+77312700 None:intergenic
TAACGGCCTTTCCCATGCTA+CGG 0.580211 1.4:+77313315 None:intergenic
TTGCCTTCCACTTTGTACAA+GGG 0.582360 1.4:+77311667 None:intergenic
AGGGACAACTTCAGCAGATG+AGG 0.586458 1.4:+77315576 None:intergenic
TGGTGCAGAACTCCCTATTG+AGG 0.586537 1.4:-77313496 MS.gene006203:CDS
GAGGACTTTCTTGCATTGAT+GGG 0.588996 1.4:+77315595 None:intergenic
AATCATCTTCGGGTGATACA+GGG 0.589652 1.4:+77315557 None:intergenic
GTAATGTTTCTGGTGGAATG+TGG 0.589846 1.4:-77315340 MS.gene006203:CDS
CTTTCTGGAGAAACTGCACA+TGG 0.592158 1.4:-77313185 MS.gene006203:CDS
ATCACCCGAAGATGATTCAA+AGG 0.592363 1.4:-77315551 MS.gene006203:intron
TCAGATACCTCTGCTCTGGT+TGG 0.594373 1.4:+77313248 None:intergenic
AATACTTGGCCAATATTAGG+TGG 0.594417 1.4:+77312891 None:intergenic
CCATATGCAGAAGAATGGAA+TGG 0.594857 1.4:-77311711 MS.gene006203:intron
CAAGTTGGTAATGTTTCTGG+TGG 0.597270 1.4:-77315347 MS.gene006203:CDS
CTTCAGGATCTACACATGAC+AGG 0.598783 1.4:-77315708 MS.gene006203:CDS
ATAAGGATATGCCGTAGCAT+GGG 0.599769 1.4:-77313326 MS.gene006203:CDS
GTTGTGAAGCAAAGCTTGGG+GGG 0.600193 1.4:+77315622 None:intergenic
GACAACAGTTGAAGTTCCAA+GGG 0.600278 1.4:+77312677 None:intergenic
AATTATTACTGCATCTGATG+GGG 0.603859 1.4:-77313712 MS.gene006203:intron
AATTACCTGCAACAAATCCA+AGG 0.604246 1.4:+77312107 None:intergenic
AAAAGATGGAGGCTTTAACA+AGG 0.604406 1.4:+77315678 None:intergenic
TAGCCCTTGTACAAAGTGGA+AGG 0.605384 1.4:-77311670 MS.gene006203:CDS
TGTCAATGATGTCGAAGAAG+GGG 0.607214 1.4:-77314861 MS.gene006203:CDS
ATGCAAACATCTCGCTCATG+TGG 0.611672 1.4:+77312724 None:intergenic
CCTGAATATTGTGAGTGGAA+TGG 0.615998 1.4:+77311630 None:intergenic
GCTGTTCGAGAAGGTTCCGA+TGG 0.616692 1.4:-77313215 MS.gene006203:CDS
CAGAAGCCGCTTTACCAAGT+GGG 0.616792 1.4:-77312920 MS.gene006203:CDS
TTGTGGTGTATAGATTGAGG+CGG 0.618279 1.4:-77315396 MS.gene006203:intron
TGCAGAACTCCCTATTGAGG+AGG 0.618747 1.4:-77313493 MS.gene006203:CDS
GTCCAGGCTATGGTTGCAAG+AGG 0.621810 1.4:-77313525 MS.gene006203:intron
ATGGAGGAGAGCTCGCGTCA+CGG 0.623292 1.4:-77314222 MS.gene006203:CDS
CATCTGCCCACTTGGTAAAG+CGG 0.628930 1.4:+77312914 None:intergenic
TGTCTTGGACTTAACCAAGA+AGG 0.629593 1.4:+77314273 None:intergenic
AGGTTGTGAAGCAAAGCTTG+GGG 0.630895 1.4:+77315620 None:intergenic
GTGAAATGCGAAGTTATCGA+TGG 0.631985 1.4:-77314241 MS.gene006203:CDS
GGTTGAAACTTAATTTGTGG+CGG 0.634449 1.4:+77311595 None:intergenic
GGAGGTTTGAATGGATCCAG+TGG 0.635775 1.4:+77315744 None:intergenic
CCCCACGCCAACCAGAGCAG+AGG 0.642045 1.4:-77313255 MS.gene006203:CDS
GATATGCCGTAGCATGGGAA+AGG 0.644726 1.4:-77313321 MS.gene006203:CDS
GGTTGTGAAGCAAAGCTTGG+GGG 0.646649 1.4:+77315621 None:intergenic
CCTCTGCTCTGGTTGGCGTG+GGG 0.646850 1.4:+77313255 None:intergenic
ACAGAAGCCGCTTTACCAAG+TGG 0.649319 1.4:-77312921 MS.gene006203:CDS
GCTCGTATGAATATGTCTCA+TGG 0.651990 1.4:-77315212 MS.gene006203:CDS
AAATGCGAAGTTATCGATGG+AGG 0.652757 1.4:-77314238 MS.gene006203:CDS
CTTGGTTAAGTCCAAGACAG+CGG 0.652841 1.4:-77314269 MS.gene006203:CDS
GTCATGTGTAGATCCTGAAG+TGG 0.656544 1.4:+77315711 None:intergenic
TGGAATGTGGTCTAAGCCAA+TGG 0.668652 1.4:-77315327 MS.gene006203:CDS
TGAAGTGGGTCGTAAGAGGG+AGG 0.672720 1.4:+77315726 None:intergenic
GTGGAAGGCAACCTATATGG+AGG 0.675974 1.4:-77311655 MS.gene006203:CDS
AATGATTTGGAAACTTGCTG+AGG 0.679513 1.4:-77315249 MS.gene006203:CDS
TCATGTGTAGATCCTGAAGT+GGG 0.693391 1.4:+77315712 None:intergenic
TCGGACCTGAATATTGTGAG+TGG 0.700079 1.4:+77311625 None:intergenic
GCAGGAAAAGGGTACAACAG+AGG 0.715152 1.4:-77312203 MS.gene006203:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGAACAAATTAAAATTAAAA+TGG + chr1.4:77315615-77315634 None:intergenic 10.0%
!!! AATTTATTTTTCTGTTTTTT+AGG - chr1.4:77312356-77312375 MS.gene006203:intron 10.0%
!!! ATTTATTTTTCTGTTTTTTA+GGG - chr1.4:77312357-77312376 MS.gene006203:intron 10.0%
!! AATAAGAAATTATCAAGAAT+GGG + chr1.4:77313238-77313257 None:intergenic 15.0%
!! AATTTAACAAATAACAGTTA+TGG - chr1.4:77315340-77315359 MS.gene006203:CDS 15.0%
!! ACAAATAAACTTTAATGAAA+AGG + chr1.4:77312286-77312305 None:intergenic 15.0%
!! CATAAGAAAAAAAAAATGAT+GGG - chr1.4:77311885-77311904 MS.gene006203:intron 15.0%
!! TAATAAGAAATTATCAAGAA+TGG + chr1.4:77313239-77313258 None:intergenic 15.0%
!! TCATAAGAAAAAAAAAATGA+TGG - chr1.4:77311884-77311903 MS.gene006203:intron 15.0%
!! TTTCATTAAAGTTTATTTGT+TGG - chr1.4:77312286-77312305 MS.gene006203:intron 15.0%
!!! AGATTATTTTGAAATGTATT+GGG - chr1.4:77314905-77314924 MS.gene006203:CDS 15.0%
!! AACTGAAATTGAAGAAATAT+CGG + chr1.4:77314255-77314274 None:intergenic 20.0%
!! ACAAATTAATGAAATAATGC+AGG + chr1.4:77313690-77313709 None:intergenic 20.0%
!! AGAAGTTCATAAATGTATAA+AGG + chr1.4:77315477-77315496 None:intergenic 20.0%
!! CACAATTCAACAAAATAAAT+CGG + chr1.4:77315050-77315069 None:intergenic 20.0%
!! CTTAGAAAGGAATATAAATA+TGG - chr1.4:77314275-77314294 MS.gene006203:CDS 20.0%
!! CTTTAATGAAAAGGAAAAAA+AGG + chr1.4:77312277-77312296 None:intergenic 20.0%
!! TTTCCTCTCATATTATTATT+TGG - chr1.4:77315382-77315401 MS.gene006203:CDS 20.0%
!!! AGTGAGAAAATTTGATTTTT+AGG - chr1.4:77311910-77311929 MS.gene006203:intron 20.0%
!!! GAAATGTGATTTATTCTTTT+TGG - chr1.4:77314607-77314626 MS.gene006203:intron 20.0%
!!! GAGATTATTTTGAAATGTAT+TGG - chr1.4:77314904-77314923 MS.gene006203:CDS 20.0%
!!! TAGTCTTACCTTTTTTTTTT+GGG - chr1.4:77314959-77314978 MS.gene006203:CDS 20.0%
!!! TCATAAGAAAGTTATTGATT+TGG - chr1.4:77312187-77312206 MS.gene006203:CDS 20.0%
!!! TTAGTCTTACCTTTTTTTTT+TGG - chr1.4:77314958-77314977 MS.gene006203:CDS 20.0%
! AAAGGTAAGACTAATTATTG+AGG + chr1.4:77314952-77314971 None:intergenic 25.0%
! AAGCCAAATAATAATATGAG+AGG + chr1.4:77315388-77315407 None:intergenic 25.0%
! AATTAGAACTGAACTCTAAT+TGG - chr1.4:77315569-77315588 MS.gene006203:CDS 25.0%
! ACAAAATAAATCGGATTGAT+CGG + chr1.4:77315041-77315060 None:intergenic 25.0%
! ACTAAGATTGTTTGTACTAT+TGG - chr1.4:77312071-77312090 MS.gene006203:intron 25.0%
! ATAATCTCTCAAACATACTT+AGG + chr1.4:77314892-77314911 None:intergenic 25.0%
! ATATCCAACCCAAAAAAAAA+AGG + chr1.4:77314970-77314989 None:intergenic 25.0%
! ATGTATTGGGTTAAATTGTT+TGG - chr1.4:77314918-77314937 MS.gene006203:CDS 25.0%
! ATTTCCTTTGTATTAGTAGA+AGG + chr1.4:77312098-77312117 None:intergenic 25.0%
! CTAATACAAAGGAAATGATT+TGG - chr1.4:77312102-77312121 MS.gene006203:intron 25.0%
! GTAATAATTGAATGCAAGTT+CGG + chr1.4:77313641-77313660 None:intergenic 25.0%
! TAATGAAATAATGCAGGATT+AGG + chr1.4:77313684-77313703 None:intergenic 25.0%
! TCGGAAGATATCTTTAATAT+GGG - chr1.4:77315281-77315300 MS.gene006203:CDS 25.0%
! TGTACTAAATAGGTTATTGT+GGG - chr1.4:77312817-77312836 MS.gene006203:intron 25.0%
! TTCAATTTCAGTTCTTAGAA+AGG - chr1.4:77314262-77314281 MS.gene006203:CDS 25.0%
! TTCGGAAGATATCTTTAATA+TGG - chr1.4:77315280-77315299 MS.gene006203:CDS 25.0%
! TTGTCAAATAGTTGTTATAG+TGG + chr1.4:77312881-77312900 None:intergenic 25.0%
!! CTTTTCTGCAACAAATTAAA+AGG + chr1.4:77313351-77313370 None:intergenic 25.0%
!! GCTAAAGATTTATGTTTCTA+CGG + chr1.4:77313758-77313777 None:intergenic 25.0%
!!! CTTTTAATTTGTTGCAGAAA+AGG - chr1.4:77313349-77313368 MS.gene006203:intron 25.0%
!!! TAGTCATCTTCTATTTTAAG+AGG + chr1.4:77314827-77314846 None:intergenic 25.0%
!!! TTTTGTTCACTGATTTATTC+TGG - chr1.4:77313788-77313807 MS.gene006203:intron 25.0%
AACTAATCAGTGGTACTAAT+TGG + chr1.4:77313519-77313538 None:intergenic 30.0%
AAGAATGGAATGGTTAAAGA+AGG - chr1.4:77315663-77315682 MS.gene006203:CDS 30.0%
AAGTTTAGACCTTGAATACT+TGG + chr1.4:77314490-77314509 None:intergenic 30.0%
AATTATTACTGCATCTGATG+GGG - chr1.4:77313652-77313671 MS.gene006203:intron 30.0%
ACAAACCTTTGAATCATCTT+CGG + chr1.4:77311821-77311840 None:intergenic 30.0%
AGCGAAATAAGAATAAGAGA+TGG + chr1.4:77311851-77311870 None:intergenic 30.0%
AGTCAGAAATTCACATAAGA+TGG + chr1.4:77313042-77313061 None:intergenic 30.0%
ATACACCACAAAAACCAAAA+GGG + chr1.4:77311959-77311978 None:intergenic 30.0%
CAACCAATCTTGTTAAAAAC+TGG - chr1.4:77312408-77312427 MS.gene006203:intron 30.0%
CAATTATTACTGCATCTGAT+GGG - chr1.4:77313651-77313670 MS.gene006203:intron 30.0%
CATAAATGTATAAAGGTCGA+TGG + chr1.4:77315470-77315489 None:intergenic 30.0%
CATATTTGTGGCTACAATAA+CGG + chr1.4:77314069-77314088 None:intergenic 30.0%
CGGCAATGAATAAAATATTC+CGG - chr1.4:77314576-77314595 MS.gene006203:intron 30.0%
CTGATCAGTAAAAGCAAATA+TGG + chr1.4:77314768-77314787 None:intergenic 30.0%
CTGTACTAAATAGGTTATTG+TGG - chr1.4:77312816-77312835 MS.gene006203:intron 30.0%
GATAACACTCTGTACTAAAT+AGG - chr1.4:77312807-77312826 MS.gene006203:intron 30.0%
GCGAAATAAGAATAAGAGAT+GGG + chr1.4:77311850-77311869 None:intergenic 30.0%
GTCAATTTCCTATTTATCTC+TGG - chr1.4:77312986-77313005 MS.gene006203:intron 30.0%
GTGCTAAATGATTGATGAAT+CGG - chr1.4:77312599-77312618 MS.gene006203:intron 30.0%
TAAATATTGTCTGCTGCAAA+GGG - chr1.4:77312668-77312687 MS.gene006203:CDS 30.0%
TAATATTGGCCAAGTATTCA+AGG - chr1.4:77314478-77314497 MS.gene006203:intron 30.0%
TATACACCACAAAAACCAAA+AGG + chr1.4:77311960-77311979 None:intergenic 30.0%
TCAATTATTACTGCATCTGA+TGG - chr1.4:77313650-77313669 MS.gene006203:intron 30.0%
TCAGAGAATTCCATGTAAAT+AGG + chr1.4:77315211-77315230 None:intergenic 30.0%
TCGAACATTTAACCATGTAT+AGG - chr1.4:77315413-77315432 MS.gene006203:intron 30.0%
TTAAATATTGTCTGCTGCAA+AGG - chr1.4:77312667-77312686 MS.gene006203:CDS 30.0%
TTGAATACTTGGCCAATATT+AGG + chr1.4:77314479-77314498 None:intergenic 30.0%
! AACAATTTTACCTGCAAAAG+CGG + chr1.4:77313899-77313918 None:intergenic 30.0%
! AACTCAGTTGACATTTTCAT+TGG + chr1.4:77315540-77315559 None:intergenic 30.0%
! AGCTTTGACATTCTTATTGT+TGG - chr1.4:77312955-77312974 MS.gene006203:CDS 30.0%
! ATTACTTTCGCAGCTTTAAT+TGG + chr1.4:77314404-77314423 None:intergenic 30.0%
! ATTTGTTGCAGAAAAGGATT+GGG - chr1.4:77313355-77313374 MS.gene006203:intron 30.0%
! GTGTTGTCATTTGTCAATTA+CGG - chr1.4:77312720-77312739 MS.gene006203:CDS 30.0%
! TTAGTCTTTCTTCTAACCAT+TGG + chr1.4:77312056-77312075 None:intergenic 30.0%
! TTTTTGTGGTGTATAGATTG+AGG - chr1.4:77311965-77311984 MS.gene006203:intron 30.0%
!! AACTACCCTCATTTTAATGT+CGG - chr1.4:77314556-77314575 MS.gene006203:intron 30.0%
!! AAGATTTTGGAGGAAAAAGA+TGG + chr1.4:77311703-77311722 None:intergenic 30.0%
!! AATTTGTTGCAGAAAAGGAT+TGG - chr1.4:77313354-77313373 MS.gene006203:intron 30.0%
!! AGAAGTTCTTAGAAGTACTA+TGG + chr1.4:77315320-77315339 None:intergenic 30.0%
!! ATTTGACAACATTGATTCCA+AGG - chr1.4:77312892-77312911 MS.gene006203:CDS 30.0%
!! GAAAGTTATTGATTTGGTCA+AGG - chr1.4:77312193-77312212 MS.gene006203:CDS 30.0%
!! GTTTTTAACAAGATTGGTTG+TGG + chr1.4:77312408-77312427 None:intergenic 30.0%
!! TCATTAATTTGTTGCCTAAC+TGG - chr1.4:77313698-77313717 MS.gene006203:intron 30.0%
!!! CTTACCTTTTTTTTTTGGGT+TGG - chr1.4:77314963-77314982 MS.gene006203:CDS 30.0%
!!! CTTTGTTGTTGACCTAATTT+TGG - chr1.4:77315131-77315150 MS.gene006203:CDS 30.0%
!!! GATTTGTTGCAGGTAATTTT+CGG - chr1.4:77315262-77315281 MS.gene006203:CDS 30.0%
!!! TTTGGTGTTTTCTCGATAAT+TGG - chr1.4:77313959-77313978 MS.gene006203:CDS 30.0%
AAAGTCTAACCAGTGATTGA+AGG + chr1.4:77313204-77313223 None:intergenic 35.0%
AAATATTGTCTGCTGCAAAG+GGG - chr1.4:77312669-77312688 MS.gene006203:CDS 35.0%
AACTGTTGTCTTCACTAGAT+CGG - chr1.4:77314700-77314719 MS.gene006203:intron 35.0%
AAGGAAAAAAAGGCTTACCT+TGG + chr1.4:77312267-77312286 None:intergenic 35.0%
AATACTTGGCCAATATTAGG+TGG + chr1.4:77314476-77314495 None:intergenic 35.0%
AATCACATTTCAGTGTCAAC+CGG + chr1.4:77314598-77314617 None:intergenic 35.0%
AATCTTGTTAAAAACTGGCC+AGG - chr1.4:77312413-77312432 MS.gene006203:intron 35.0%
AATTACCTGCAACAAATCCA+AGG + chr1.4:77315260-77315279 None:intergenic 35.0%
AGGTTTAAGCAACAAGAGAA+AGG + chr1.4:77314807-77314826 None:intergenic 35.0%
ATCGATAACTTCGCATTTCA+CGG + chr1.4:77313124-77313143 None:intergenic 35.0%
ATCGGATTGATCGGTTAATA+AGG + chr1.4:77315032-77315051 None:intergenic 35.0%
CAAACCTTTGAATCATCTTC+GGG + chr1.4:77311820-77311839 None:intergenic 35.0%
CAATGCAGGAAGAGATAATA+AGG - chr1.4:77314021-77314040 MS.gene006203:intron 35.0%
CATACTTTCCAGCATATTTG+TGG + chr1.4:77314081-77314100 None:intergenic 35.0%
CATTGCCGACATTAAAATGA+GGG + chr1.4:77314564-77314583 None:intergenic 35.0%
GAAGAAATATCGGAATGTCA+AGG + chr1.4:77314245-77314264 None:intergenic 35.0%
GACAGAAAGCGACAATAATA+TGG - chr1.4:77314357-77314376 MS.gene006203:intron 35.0%
GATTGGGATGACATCAAATT+TGG - chr1.4:77313371-77313390 MS.gene006203:intron 35.0%
GGATAGTAAAAGTGAATTCC+TGG + chr1.4:77312434-77312453 None:intergenic 35.0%
GTTGGTATGATGATATCTTC+AGG - chr1.4:77312304-77312323 MS.gene006203:intron 35.0%
TAACTATGCACATTGAGATG+TGG + chr1.4:77314222-77314241 None:intergenic 35.0%
TAAGCAACAAGAGAAAGGTA+GGG + chr1.4:77314802-77314821 None:intergenic 35.0%
TAATCGAGCAAACTAATCAG+TGG + chr1.4:77313529-77313548 None:intergenic 35.0%
TATAGGTTCATTCATGCATG+CGG - chr1.4:77315430-77315449 MS.gene006203:intron 35.0%
TATTAGACATCATGGTTGCA+TGG + chr1.4:77314667-77314686 None:intergenic 35.0%
TATTGTAGCCACAAATATGC+TGG - chr1.4:77314070-77314089 MS.gene006203:intron 35.0%
TCATTGCCGACATTAAAATG+AGG + chr1.4:77314565-77314584 None:intergenic 35.0%
TGACTCTTGATGTATGATGT+AGG - chr1.4:77313057-77313076 MS.gene006203:intron 35.0%
TGATGATATCTTCAGGATCA+CGG - chr1.4:77312311-77312330 MS.gene006203:intron 35.0%
TGCATCCTTAACGAAAGAAA+CGG + chr1.4:77313423-77313442 None:intergenic 35.0%
TGCATGAATGAACCTATACA+TGG + chr1.4:77315428-77315447 None:intergenic 35.0%
TGGTCCTTCTACTAATACAA+AGG - chr1.4:77312091-77312110 MS.gene006203:intron 35.0%
TGTTTCCATATGCAGAAGAA+TGG - chr1.4:77315648-77315667 MS.gene006203:CDS 35.0%
TTAAGCAACAAGAGAAAGGT+AGG + chr1.4:77314803-77314822 None:intergenic 35.0%
TTGTCAATGATGTCGAAGAA+GGG - chr1.4:77312502-77312521 MS.gene006203:intron 35.0%
TTTGTCAATGATGTCGAAGA+AGG - chr1.4:77312501-77312520 MS.gene006203:intron 35.0%
! AAAAGATGGAGGCTTTAACA+AGG + chr1.4:77311689-77311708 None:intergenic 35.0%
! TGGCCAGTTTTTAACAAGAT+TGG + chr1.4:77312414-77312433 None:intergenic 35.0%
! TGTTGTTGACCTAATTTTGG+TGG - chr1.4:77315134-77315153 MS.gene006203:CDS 35.0%
! TTACACGTTTTGCAACAAGT+TGG - chr1.4:77312002-77312021 MS.gene006203:intron 35.0%
! TTCAATCACTGGTTAGACTT+TGG - chr1.4:77313203-77313222 MS.gene006203:CDS 35.0%
! TTTTCGTCTTCTCTGTATGT+GGG - chr1.4:77313271-77313290 MS.gene006203:CDS 35.0%
! TTTTTCGTCTTCTCTGTATG+TGG - chr1.4:77313270-77313289 MS.gene006203:CDS 35.0%
!! AATGATTTGGAAACTTGCTG+AGG - chr1.4:77312115-77312134 MS.gene006203:CDS 35.0%
!! AGTTCTTAGAAGTACTATGG+AGG + chr1.4:77315317-77315336 None:intergenic 35.0%
!! ATTTTGGAGGAAAAAGATGG+AGG + chr1.4:77311700-77311719 None:intergenic 35.0%
!! CAACAAGTTGGTAATGTTTC+TGG - chr1.4:77312014-77312033 MS.gene006203:intron 35.0%
!! TAAGGTTATGTTGGTTTCCA+AGG - chr1.4:77313314-77313333 MS.gene006203:CDS 35.0%
!! TCCAGAAAGCATTATTCCAT+CGG + chr1.4:77314168-77314187 None:intergenic 35.0%
!! TTCACTTTTACTATCCAGAG+TGG - chr1.4:77312438-77312457 MS.gene006203:intron 35.0%
AAAAGGAATGTTATGCGCCT+TGG + chr1.4:77313334-77313353 None:intergenic 40.0%
AAAGTGGAAGGCAACCTATA+TGG - chr1.4:77315706-77315725 MS.gene006203:CDS 40.0%
AAATGCGAAGTTATCGATGG+AGG - chr1.4:77313126-77313145 MS.gene006203:intron 40.0%
AAGCAACAAGAGAAAGGTAG+GGG + chr1.4:77314801-77314820 None:intergenic 40.0%
AATAAGGATATGCCGTAGCA+TGG - chr1.4:77314037-77314056 MS.gene006203:intron 40.0%
AATATCAGATACCTCTGCTC+TGG + chr1.4:77314123-77314142 None:intergenic 40.0%
AATATTGTCTGCTGCAAAGG+GGG - chr1.4:77312670-77312689 MS.gene006203:CDS 40.0%
AATCATCTTCGGGTGATACA+GGG + chr1.4:77311810-77311829 None:intergenic 40.0%
ACAGGATGGTAAAAGAAGAC+AGG + chr1.4:77313821-77313840 None:intergenic 40.0%
ACCATGATGTCTAATACCCT+TGG - chr1.4:77314671-77314690 MS.gene006203:intron 40.0%
ACTGTTGTCTTCACTAGATC+GGG - chr1.4:77314701-77314720 MS.gene006203:intron 40.0%
AGACAACAGTTGAAGTTCCA+AGG + chr1.4:77314691-77314710 None:intergenic 40.0%
AGAGACATTCACAAAAGCCT+TGG - chr1.4:77315240-77315259 MS.gene006203:CDS 40.0%
AGCACCAAGTCTTTGATTGT+AGG - chr1.4:77313016-77313035 MS.gene006203:intron 40.0%
AGGTGTCTGTCCTATTTACA+TGG - chr1.4:77315198-77315217 MS.gene006203:CDS 40.0%
ATAAGGATATGCCGTAGCAT+GGG - chr1.4:77314038-77314057 MS.gene006203:intron 40.0%
ATCACCCGAAGATGATTCAA+AGG - chr1.4:77311813-77311832 MS.gene006203:intron 40.0%
ATGCATGCGGTAATTAACCA+CGG - chr1.4:77315443-77315462 MS.gene006203:intron 40.0%
ATGGCCTACAATCAAAGACT+TGG + chr1.4:77313023-77313042 None:intergenic 40.0%
CAATTCCACTCATCAAATGC+AGG - chr1.4:77313563-77313582 MS.gene006203:intron 40.0%
CATTTGTCAATTACGGATCG+CGG - chr1.4:77312727-77312746 MS.gene006203:CDS 40.0%
CCATATGCAGAAGAATGGAA+TGG - chr1.4:77315653-77315672 MS.gene006203:CDS 40.0%
CCATTCCACTCACAATATTC+AGG - chr1.4:77315734-77315753 MS.gene006203:CDS 40.0%
CCATTCCATTCTTCTGCATA+TGG + chr1.4:77315656-77315675 None:intergenic 40.0%
CCTGAATATTGTGAGTGGAA+TGG + chr1.4:77315737-77315756 None:intergenic 40.0%
CGGAGACATTTGAATGTTAG+AGG - chr1.4:77313162-77313181 MS.gene006203:intron 40.0%
CTCTTGATGTATGATGTAGG+TGG - chr1.4:77313060-77313079 MS.gene006203:intron 40.0%
GACAACAGTTGAAGTTCCAA+GGG + chr1.4:77314690-77314709 None:intergenic 40.0%
GCTCGTATGAATATGTCTCA+TGG - chr1.4:77312152-77312171 MS.gene006203:CDS 40.0%
GTGAAATGCGAAGTTATCGA+TGG - chr1.4:77313123-77313142 MS.gene006203:intron 40.0%
TAATCCCGATTCTCCAAATC+AGG + chr1.4:77313724-77313743 None:intergenic 40.0%
TAATGCACACCGTAGCATTA+CGG - chr1.4:77314420-77314439 MS.gene006203:intron 40.0%
TATCTTCAGGATCACGGTAT+CGG - chr1.4:77312317-77312336 MS.gene006203:intron 40.0%
TCACGCTTCCAGAGATAAAT+AGG + chr1.4:77312997-77313016 None:intergenic 40.0%
TCATGTGTAGATCCTGAAGT+GGG + chr1.4:77311655-77311674 None:intergenic 40.0%
TCCATAATGCTTGTCAATGC+AGG - chr1.4:77314007-77314026 MS.gene006203:intron 40.0%
TCCGATGGAATAATGCTTTC+TGG - chr1.4:77314164-77314183 MS.gene006203:intron 40.0%
TGAGGACTTTCTTGCATTGA+TGG + chr1.4:77311773-77311792 None:intergenic 40.0%
TGCAATTATGCTTGACACCA+AGG - chr1.4:77312247-77312266 MS.gene006203:intron 40.0%
TGTCAATGATGTCGAAGAAG+GGG - chr1.4:77312503-77312522 MS.gene006203:intron 40.0%
TGTCTTGGACTTAACCAAGA+AGG + chr1.4:77313094-77313113 None:intergenic 40.0%
TTGCCTTCCACTTTGTACAA+GGG + chr1.4:77315700-77315719 None:intergenic 40.0%
TTGTGGTGTATAGATTGAGG+CGG - chr1.4:77311968-77311987 MS.gene006203:intron 40.0%
! AGACTTAGGTGGGAAGATTT+TGG + chr1.4:77311716-77311735 None:intergenic 40.0%
! ATTGCAATTGCTGTTCGAGA+AGG - chr1.4:77314140-77314159 MS.gene006203:intron 40.0%
! CTATGCCGTTTCTTTCGTTA+AGG - chr1.4:77313415-77313434 MS.gene006203:intron 40.0%
! GAAAATTGCTGTGACCCTTT+TGG - chr1.4:77311942-77311961 MS.gene006203:intron 40.0%
! GAGGACTTTCTTGCATTGAT+GGG + chr1.4:77311772-77311791 None:intergenic 40.0%
! TCCTGCATTGACAAGCATTA+TGG + chr1.4:77314011-77314030 None:intergenic 40.0%
!! AAAAGCCTTGGATTTGTTGC+AGG - chr1.4:77315252-77315271 MS.gene006203:CDS 40.0%
!! CAAGTTGGTAATGTTTCTGG+TGG - chr1.4:77312017-77312036 MS.gene006203:intron 40.0%
!! GTAATGTTTCTGGTGGAATG+TGG - chr1.4:77312024-77312043 MS.gene006203:intron 40.0%
!! TCCAAGGGTATTAGACATCA+TGG + chr1.4:77314675-77314694 None:intergenic 40.0%
!!! TGTGACCCTTTTGGTTTTTG+TGG - chr1.4:77311951-77311970 MS.gene006203:intron 40.0%
!!! TTCTGTTTTTTAGGGTCCTG+AGG - chr1.4:77312365-77312384 MS.gene006203:intron 40.0%
!!! TTTTTTAGGGTCCTGAGGTT+AGG - chr1.4:77312370-77312389 MS.gene006203:intron 40.0%
AAAAGCGGAACCTCCTCAAT+AGG + chr1.4:77313884-77313903 None:intergenic 45.0%
AAAGCAAATATGGTGCCTGC+AGG + chr1.4:77314758-77314777 None:intergenic 45.0%
AAAGCGGAACCTCCTCAATA+GGG + chr1.4:77313883-77313902 None:intergenic 45.0%
AATTTGTGGCGGCTACTGTT+CGG + chr1.4:77315761-77315780 None:intergenic 45.0%
AGGTGGTATGATGTCCTTCT+TGG - chr1.4:77313077-77313096 MS.gene006203:intron 45.0%
AGGTTGTGAAGCAAAGCTTG+GGG + chr1.4:77311747-77311766 None:intergenic 45.0%
ATGCAAACATCTCGCTCATG+TGG + chr1.4:77314643-77314662 None:intergenic 45.0%
ATGGTTGCAAGAGGAGATCT+TGG - chr1.4:77313848-77313867 MS.gene006203:intron 45.0%
CATGCTTCTTGTTGACGGTA+TGG - chr1.4:77312527-77312546 MS.gene006203:intron 45.0%
CTTCACTAGATCGGGTTTCA+TGG - chr1.4:77314709-77314728 MS.gene006203:intron 45.0%
CTTCAGGATCTACACATGAC+AGG - chr1.4:77311656-77311675 MS.gene006203:CDS 45.0%
CTTGGTTAAGTCCAAGACAG+CGG - chr1.4:77313095-77313114 MS.gene006203:intron 45.0%
GAAGTAGCCCTTGTACAAAG+TGG - chr1.4:77315690-77315709 MS.gene006203:CDS 45.0%
GAATCATCTTCGGGTGATAC+AGG + chr1.4:77311811-77311830 None:intergenic 45.0%
GAGGTTGTGAAGCAAAGCTT+GGG + chr1.4:77311748-77311767 None:intergenic 45.0%
GGGGATTGTTAGACTTAGGT+GGG + chr1.4:77311726-77311745 None:intergenic 45.0%
GTCATGTGTAGATCCTGAAG+TGG + chr1.4:77311656-77311675 None:intergenic 45.0%
GTGGAATGGAACCTCCATAT+AGG + chr1.4:77315723-77315742 None:intergenic 45.0%
GTTGCCTTCCACTTTGTACA+AGG + chr1.4:77315701-77315720 None:intergenic 45.0%
GTTGGGGGTTAAGGTTATGT+TGG - chr1.4:77313305-77313324 MS.gene006203:CDS 45.0%
TAGCCCTTGTACAAAGTGGA+AGG - chr1.4:77315694-77315713 MS.gene006203:CDS 45.0%
TCGGACCTGAATATTGTGAG+TGG + chr1.4:77315742-77315761 None:intergenic 45.0%
TCGTAAGAGGGAGGTTTGAA+TGG + chr1.4:77311632-77311651 None:intergenic 45.0%
TGAATCGGCAAACACAAGAG+TGG - chr1.4:77312614-77312633 MS.gene006203:CDS 45.0%
TGAGGTTGTGAAGCAAAGCT+TGG + chr1.4:77311749-77311768 None:intergenic 45.0%
TGGAATGTGGTCTAAGCCAA+TGG - chr1.4:77312037-77312056 MS.gene006203:intron 45.0%
TGTATAGATTGAGGCGGAGT+TGG - chr1.4:77311974-77311993 MS.gene006203:intron 45.0%
TTCTCCAAATCAGGCCAGTT+AGG + chr1.4:77313715-77313734 None:intergenic 45.0%
TTGGGGGGATTGTTAGACTT+AGG + chr1.4:77311730-77311749 None:intergenic 45.0%
TTTACTATCCAGAGTGGCGT+TGG - chr1.4:77312444-77312463 MS.gene006203:intron 45.0%
! CTTAGGTGGGAAGATTTTGG+AGG + chr1.4:77311713-77311732 None:intergenic 45.0%
! CTTCTTTTACCATCCTGTCC+AGG - chr1.4:77313823-77313842 MS.gene006203:intron 45.0%
! CTTTCTGGAGAAACTGCACA+TGG - chr1.4:77314179-77314198 MS.gene006203:CDS 45.0%
! CTTTCTTGCATTGATGGGTG+AGG + chr1.4:77311767-77311786 None:intergenic 45.0%
! GAAAAGGGTACAACAGAGGT+TGG - chr1.4:77315165-77315184 MS.gene006203:CDS 45.0%
! TGTTGTACCCTTTTCCTGCA+TGG + chr1.4:77315160-77315179 None:intergenic 45.0%
!! ACATTGATTCCAAGGCAGTG+TGG - chr1.4:77312900-77312919 MS.gene006203:CDS 45.0%
!! ACTGGCCTGATTTGGAGAAT+CGG - chr1.4:77313716-77313735 MS.gene006203:CDS 45.0%
!! ATTTGGAAACTTGCTGAGGC+TGG - chr1.4:77312119-77312138 MS.gene006203:CDS 45.0%
!! CAGAGGTTGGCTTTGTATCA+AGG - chr1.4:77315178-77315197 MS.gene006203:CDS 45.0%
!! TTGGGTTGGATATCTGTGCT+TGG - chr1.4:77314977-77314996 MS.gene006203:CDS 45.0%
!! TAATTGTAAATATAATAATT+TGG - chr1.4:77313941-77313960 MS.gene006203:CDS 5.0%
AAATCCCCACTCCTAACCTC+AGG + chr1.4:77312384-77312403 None:intergenic 50.0%
AAGGGGGTAAGTCTCTGTCT+CGG - chr1.4:77312686-77312705 MS.gene006203:CDS 50.0%
AGGGACAACTTCAGCAGATG+AGG + chr1.4:77311791-77311810 None:intergenic 50.0%
ATCCTGAAGTGGGTCGTAAG+AGG + chr1.4:77311645-77311664 None:intergenic 50.0%
CACAGCCTGCATTTGATGAG+TGG + chr1.4:77313571-77313590 None:intergenic 50.0%
CACTCATCAAATGCAGGCTG+TGG - chr1.4:77313569-77313588 MS.gene006203:intron 50.0%
CATCTGCCCACTTGGTAAAG+CGG + chr1.4:77314453-77314472 None:intergenic 50.0%
CCTGCATGGCCACCAAAATT+AGG + chr1.4:77315146-77315165 None:intergenic 50.0%
GATATGCCGTAGCATGGGAA+AGG - chr1.4:77314043-77314062 MS.gene006203:intron 50.0%
GCAACACTGCCTTCAATCAC+TGG - chr1.4:77313192-77313211 MS.gene006203:CDS 50.0%
GGAGGTTTGAATGGATCCAG+TGG + chr1.4:77311623-77311642 None:intergenic 50.0%
GGCTTCTGTCCGTAATGCTA+CGG + chr1.4:77314432-77314451 None:intergenic 50.0%
GGGCAGATGCCACCTAATAT+TGG - chr1.4:77314464-77314483 MS.gene006203:intron 50.0%
GGGGACATGCTTCTTGTTGA+CGG - chr1.4:77312522-77312541 MS.gene006203:intron 50.0%
GGGGGATTGTTAGACTTAGG+TGG + chr1.4:77311727-77311746 None:intergenic 50.0%
GGTTGTGAAGCAAAGCTTGG+GGG + chr1.4:77311746-77311765 None:intergenic 50.0%
GTATAAAGGTCGATGGACCG+TGG + chr1.4:77315463-77315482 None:intergenic 50.0%
GTGGAAGGCAACCTATATGG+AGG - chr1.4:77315709-77315728 MS.gene006203:CDS 50.0%
GTTGTGAAGCAAAGCTTGGG+GGG + chr1.4:77311745-77311764 None:intergenic 50.0%
TAACGGCCTTTCCCATGCTA+CGG + chr1.4:77314052-77314071 None:intergenic 50.0%
TCAGATACCTCTGCTCTGGT+TGG + chr1.4:77314119-77314138 None:intergenic 50.0%
TCCTGAAGTGGGTCGTAAGA+GGG + chr1.4:77311644-77311663 None:intergenic 50.0%
TGCAGAACTCCCTATTGAGG+AGG - chr1.4:77313871-77313890 MS.gene006203:intron 50.0%
TGGTGCAGAACTCCCTATTG+AGG - chr1.4:77313868-77313887 MS.gene006203:intron 50.0%
TTACCATCCTGTCCAGGCTA+TGG - chr1.4:77313829-77313848 MS.gene006203:intron 50.0%
TTGAGCCATTATCGACCTGC+AGG - chr1.4:77314740-77314759 MS.gene006203:intron 50.0%
TTTCACGGAATCCGCTGTCT+TGG + chr1.4:77313109-77313128 None:intergenic 50.0%
! ACAGAAGCCGCTTTACCAAG+TGG - chr1.4:77314443-77314462 MS.gene006203:intron 50.0%
! ATGTCTCAGGTTGCAACCAC+TGG - chr1.4:77311604-77311623 MS.gene006203:CDS 50.0%
! CAGAAGCCGCTTTACCAAGT+GGG - chr1.4:77314444-77314463 MS.gene006203:intron 50.0%
! CTGTATGTGGGCTGTTGGTT+TGG - chr1.4:77313283-77313302 MS.gene006203:CDS 50.0%
! CTTCTCTGTATGTGGGCTGT+TGG - chr1.4:77313278-77313297 MS.gene006203:CDS 50.0%
! GCAGGAAAAGGGTACAACAG+AGG - chr1.4:77315161-77315180 MS.gene006203:CDS 50.0%
! GTTGCCTAACTGGCCTGATT+TGG - chr1.4:77313708-77313727 MS.gene006203:intron 50.0%
! TTGGTGGCCATGCAGGAAAA+GGG - chr1.4:77315150-77315169 MS.gene006203:CDS 50.0%
! TTTGGTGGCCATGCAGGAAA+AGG - chr1.4:77315149-77315168 MS.gene006203:CDS 50.0%
!! ATGTGGGCTGTTGGTTTGGT+TGG - chr1.4:77313287-77313306 MS.gene006203:CDS 50.0%
!! CCTAATTTTGGTGGCCATGC+AGG - chr1.4:77315143-77315162 MS.gene006203:CDS 50.0%
!! CTGGCCTGATTTGGAGAATC+GGG - chr1.4:77313717-77313736 MS.gene006203:CDS 50.0%
!! GTTGGTTTGGTTGGGGGTTA+AGG - chr1.4:77313296-77313315 MS.gene006203:CDS 50.0%
!! TGTGGGCTGTTGGTTTGGTT+GGG - chr1.4:77313288-77313307 MS.gene006203:CDS 50.0%
ACCACTAAGCCACACTGCCT+TGG + chr1.4:77312912-77312931 None:intergenic 55.0%
AGGGTCCTGAGGTTAGGAGT+GGG - chr1.4:77312376-77312395 MS.gene006203:intron 55.0%
CAACCATAGCCTGGACAGGA+TGG + chr1.4:77313835-77313854 None:intergenic 55.0%
CTCCTCTTGCAACCATAGCC+TGG + chr1.4:77313844-77313863 None:intergenic 55.0%
CTTGCAACCATAGCCTGGAC+AGG + chr1.4:77313839-77313858 None:intergenic 55.0%
GCTGTTCGAGAAGGTTCCGA+TGG - chr1.4:77314149-77314168 MS.gene006203:intron 55.0%
GTCCAGGCTATGGTTGCAAG+AGG - chr1.4:77313839-77313858 MS.gene006203:intron 55.0%
TAGGGTCCTGAGGTTAGGAG+TGG - chr1.4:77312375-77312394 MS.gene006203:intron 55.0%
TCCAAGGCAGTGTGGCTTAG+TGG - chr1.4:77312908-77312927 MS.gene006203:CDS 55.0%
TCCCTCTTACGACCCACTTC+AGG - chr1.4:77311640-77311659 MS.gene006203:CDS 55.0%
TGAAGTGGGTCGTAAGAGGG+AGG + chr1.4:77311641-77311660 None:intergenic 55.0%
TGGTGCCTGCAGGTCGATAA+TGG + chr1.4:77314748-77314767 None:intergenic 55.0%
TTAGGTGGCATCTGCCCACT+TGG + chr1.4:77314461-77314480 None:intergenic 55.0%
!! GTGGGCTGTTGGTTTGGTTG+GGG - chr1.4:77313289-77313308 MS.gene006203:CDS 55.0%
!! TGAGGAGGTTCCGCTTTTGC+AGG - chr1.4:77313886-77313905 MS.gene006203:intron 55.0%
!! TGGGCTGTTGGTTTGGTTGG+GGG - chr1.4:77313290-77313309 MS.gene006203:CDS 55.0%
ACCTCTGCTCTGGTTGGCGT+GGG + chr1.4:77314113-77314132 None:intergenic 60.0%
ATGGAGGAGAGCTCGCGTCA+CGG - chr1.4:77313142-77313161 MS.gene006203:intron 60.0%
CAGCAGTTCCAACGCCACTC+TGG + chr1.4:77312455-77312474 None:intergenic 60.0%
GGGTCCTGAGGTTAGGAGTG+GGG - chr1.4:77312377-77312396 MS.gene006203:intron 60.0%
TACCTCTGCTCTGGTTGGCG+TGG + chr1.4:77314114-77314133 None:intergenic 60.0%
! CAGAGTGGCGTTGGAACTGC+TGG - chr1.4:77312453-77312472 MS.gene006203:intron 60.0%
CCTCTGCTCTGGTTGGCGTG+GGG + chr1.4:77314112-77314131 None:intergenic 65.0%
CCCCACGCCAACCAGAGCAG+AGG - chr1.4:77314109-77314128 MS.gene006203:intron 70.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 77311604 77315782 77311604 ID=MS.gene006203
chr1.4 mRNA 77311604 77315782 77311604 ID=MS.gene006203.t1;Parent=MS.gene006203
chr1.4 exon 77315552 77315782 77315552 ID=MS.gene006203.t1.exon1;Parent=MS.gene006203.t1
chr1.4 CDS 77315552 77315782 77315552 ID=cds.MS.gene006203.t1;Parent=MS.gene006203.t1
chr1.4 exon 77315118 77315405 77315118 ID=MS.gene006203.t1.exon2;Parent=MS.gene006203.t1
chr1.4 CDS 77315118 77315405 77315118 ID=cds.MS.gene006203.t1;Parent=MS.gene006203.t1
chr1.4 exon 77314843 77315008 77314843 ID=MS.gene006203.t1.exon3;Parent=MS.gene006203.t1
chr1.4 CDS 77314843 77315008 77314843 ID=cds.MS.gene006203.t1;Parent=MS.gene006203.t1
chr1.4 exon 77314173 77314307 77314173 ID=MS.gene006203.t1.exon4;Parent=MS.gene006203.t1
chr1.4 CDS 77314173 77314307 77314173 ID=cds.MS.gene006203.t1;Parent=MS.gene006203.t1
chr1.4 exon 77313910 77314020 77313910 ID=MS.gene006203.t1.exon5;Parent=MS.gene006203.t1
chr1.4 CDS 77313910 77314020 77313910 ID=cds.MS.gene006203.t1;Parent=MS.gene006203.t1
chr1.4 exon 77313713 77313801 77313713 ID=MS.gene006203.t1.exon6;Parent=MS.gene006203.t1
chr1.4 CDS 77313713 77313801 77313713 ID=cds.MS.gene006203.t1;Parent=MS.gene006203.t1
chr1.4 exon 77313479 77313541 77313479 ID=MS.gene006203.t1.exon7;Parent=MS.gene006203.t1
chr1.4 CDS 77313479 77313541 77313479 ID=cds.MS.gene006203.t1;Parent=MS.gene006203.t1
chr1.4 exon 77313182 77313357 77313182 ID=MS.gene006203.t1.exon8;Parent=MS.gene006203.t1
chr1.4 CDS 77313182 77313357 77313182 ID=cds.MS.gene006203.t1;Parent=MS.gene006203.t1
chr1.4 exon 77312887 77312989 77312887 ID=MS.gene006203.t1.exon9;Parent=MS.gene006203.t1
chr1.4 CDS 77312887 77312989 77312887 ID=cds.MS.gene006203.t1;Parent=MS.gene006203.t1
chr1.4 exon 77312600 77312748 77312600 ID=MS.gene006203.t1.exon10;Parent=MS.gene006203.t1
chr1.4 CDS 77312600 77312748 77312600 ID=cds.MS.gene006203.t1;Parent=MS.gene006203.t1
chr1.4 exon 77312113 77312221 77312113 ID=MS.gene006203.t1.exon11;Parent=MS.gene006203.t1
chr1.4 CDS 77312113 77312221 77312113 ID=cds.MS.gene006203.t1;Parent=MS.gene006203.t1
chr1.4 exon 77311604 77311723 77311604 ID=MS.gene006203.t1.exon12;Parent=MS.gene006203.t1
chr1.4 CDS 77311604 77311723 77311604 ID=cds.MS.gene006203.t1;Parent=MS.gene006203.t1
Gene Sequence

>MS.gene006203

ATGTCTCAGGTTGCAACCACTGGATCCATTCAAACCTCCCTCTTACGACCCACTTCAGGATCTACACATGACAGGTCTCAAACCTTGTTAAAGCCTCCATCTTTTTCCTCCAAAATCTTCCCACCTAAGTCTAACAATCCCCCCAAGCTTTGCTTCACAACCTCACCCATCAATGCAAGAAAGTCCTCATCTGCTGAAGTTGTCCCTGTATCACCCGAAGATGATTCAAAGGTTTGTTCTTTACCCATCTCTTATTCTTATTTCGCTTCTGTTTCTTGTTTCATAAGAAAAAAAAAATGATGGGTCAGTGAGAAAATTTGATTTTTAGGAAGTGTTGAGAAAATTGCTGTGACCCTTTTGGTTTTTGTGGTGTATAGATTGAGGCGGAGTTGGAGAAGTTACACGTTTTGCAACAAGTTGGTAATGTTTCTGGTGGAATGTGGTCTAAGCCAATGGTTAGAAGAAAGACTAAGATTGTTTGTACTATTGGTCCTTCTACTAATACAAAGGAAATGATTTGGAAACTTGCTGAGGCTGGAATGAATGTTGCTCGTATGAATATGTCTCATGGTGATCATGCTTCTCATAAGAAAGTTATTGATTTGGTCAAGGAGTATAATGCACAATCTAAAGATAATGTTATTGCAATTATGCTTGACACCAAGGTAAGCCTTTTTTTCCTTTTCATTAAAGTTTATTTGTTGGTATGATGATATCTTCAGGATCACGGTATCGGTTTTGTGTTAGCTGATAATTTATTTTTCTGTTTTTTAGGGTCCTGAGGTTAGGAGTGGGGATTTACCACAACCAATCTTGTTAAAAACTGGCCAGGAATTCACTTTTACTATCCAGAGTGGCGTTGGAACTGCTGGTTGTGTCAGCGTGAACTATGATGATTTTGTCAATGATGTCGAAGAAGGGGACATGCTTCTTGTTGACGGTATGGCTGCTTACTCATACAACTAAAATATTCAATTTACTAACGATCTTGTGTCGTGCTAAATGATTGATGAATCGGCAAACACAAGAGTGGTATATTCTTATATTACTTTTTTTAATCTTATTAAATATTGTCTGCTGCAAAGGGGGTAAGTCTCTGTCTCGGAAAGAAAATCAGTGTTGTCATTTGTCAATTACGGATCGCGGAAAACAGCGTTTGTTCAAATTCTGCTAAGCTGCAATGCTATAGCACTGCTACTAGTTGATAACACTCTGTACTAAATAGGTTATTGTGGGACAATATCGATTTGTTCAAAATTTACTACGCTATTGCACCACTATAACAACTATTTGACAACATTGATTCCAAGGCAGTGTGGCTTAGTGGTCTTATAGTGCTTTGCATAGTTAGAGCTTTGACATTCTTATTGTTGGAAAATAACGTCAATTTCCTATTTATCTCTGGAAGCGTGAGCACCAAGTCTTTGATTGTAGGCCATCTTATGTGAATTTCTGACTCTTGATGTATGATGTAGGTGGTATGATGTCCTTCTTGGTTAAGTCCAAGACAGCGGATTCCGTGAAATGCGAAGTTATCGATGGAGGAGAGCTCGCGTCACGGAGACATTTGAATGTTAGAGGAAAGAGTGCAACACTGCCTTCAATCACTGGTTAGACTTTGGATTATTATTCCCATTCTTGATAATTTCTTATTATTGTCTGTCACTTTTTCGTCTTCTCTGTATGTGGGCTGTTGGTTTGGTTGGGGGTTAAGGTTATGTTGGTTTCCAAGGCGCATAACATTCCTTTTAATTTGTTGCAGAAAAGGATTGGGATGACATCAAATTTGGAGTCGATAATGAAGTTGATTTCTATGCCGTTTCTTTCGTTAAGGATGCACAAGTAGTTCATGAGCTGAAGAATTATTTGAAAAGTAATTATTCAATAATCAATATACTTTTTTTTTTTTTTTCCAATTAGTACCACTGATTAGTTTGCTCGATTATTTAGAAATATGATCAATTCCACTCATCAAATGCAGGCTGTGGTGCTGATATACATGTAATTGTAAAAATTGAAAGTGCAGACTCTATACCGAACTTGCATTCAATTATTACTGCATCTGATGGGGTAATAACCTAATCCTGCATTATTTCATTAATTTGTTGCCTAACTGGCCTGATTTGGAGAATCGGGATTATTAAGCGCATACCGTAGAAACATAAATCTTTAGCATTGAATTGATTTTGTTCACTGATTTATTCTGGATGCTGACCTGTCTTCTTTTACCATCCTGTCCAGGCTATGGTTGCAAGAGGAGATCTTGGTGCAGAACTCCCTATTGAGGAGGTTCCGCTTTTGCAGGTAAAATTGTTTTTAAACAAATTTGAGATTAATTAATTGTAAATATAATAATTTGGTGTTTTCTCGATAATTGGACATTAGTTTGTGCTTATCTTAACTTCCATAATGCTTGTCAATGCAGGAAGAGATAATAAGGATATGCCGTAGCATGGGAAAGGCCGTTATTGTAGCCACAAATATGCTGGAAAGTATGATTGTTCACCCCACGCCAACCAGAGCAGAGGTATCTGATATTGCAATTGCTGTTCGAGAAGGTTCCGATGGAATAATGCTTTCTGGAGAAACTGCACATGGAAAGTAAGTAAATAACTCCACATCTCAATGTGCATAGTTACCTTGACATTCCGATATTTCTTCAATTTCAGTTCTTAGAAAGGAATATAAATATGGTAATCGAATTATTGTTGCAATAGCATCTCACTGATTTAGAAATCGAATCTAAAGCAAGAGACAGAAAGCGACAATAATATGGTATTTATTATATTGCAGATTTCCAATTAAAGCTGCGAAAGTAATGCACACCGTAGCATTACGGACAGAAGCCGCTTTACCAAGTGGGCAGATGCCACCTAATATTGGCCAAGTATTCAAGGTCTAAACTTCAAGTTCAATGTGTTTTATTGCTATTTGCTATGCTAACTTTTTTAAAACTACCCTCATTTTAATGTCGGCAATGAATAAAATATTCCGGTTGACACTGAAATGTGATTTATTCTTTTTGGTTGTGCAGAACCACATGAGCGAGATGTTTGCATACCATGCAACCATGATGTCTAATACCCTTGGAACTTCAACTGTTGTCTTCACTAGATCGGGTTTCATGGCTATTCTATTGAGCCATTATCGACCTGCAGGCACCATATTTGCTTTTACTGATCAGTGAGTTATTTCCCCTACCTTTCTCTTGTTGCTTAAACCTCTTAAAATAGAAGATGACTAGATAAACATGAAACTAATTGAATCAGTAGCATTGTATGTATTCCTAAGTATGTTTGAGAGATTATTTTGAAATGTATTGGGTTAAATTGTTTGGTTATTTTGCCTCAATAATTAGTCTTACCTTTTTTTTTTGGGTTGGATATCTGTGCTTGGTTTACAAATAAAACTGACTGATTAAATGACCTTATTAACCGATCAATCCGATTTATTTTGTTGAATTGTGTATTTCAACTGAAAACTATTTTGTGTTTATCTGCACTTATTAAAATTTATAACTATGACGACTTTGTTGTTGACCTAATTTTGGTGGCCATGCAGGAAAAGGGTACAACAGAGGTTGGCTTTGTATCAAGGTGTCTGTCCTATTTACATGGAATTCTCTGATGATGCTGAAGAGACATTCACAAAAGCCTTGGATTTGTTGCAGGTAATTTTCGGAAGATATCTTTAATATGGGTTGAGATTTACCTCCATAGTACTTCTAAGAACTTCTAATTTAACAAATAACAGTTATGGTATTGAATTTTAACTCATTTTTCCTCTCATATTATTATTTGGCTTTACGTTCGAACATTTAACCATGTATAGGTTCATTCATGCATGCGGTAATTAACCACGGTCCATCGACCTTTATACATTTATGAACTTCTAGTAGTTTAAAGTATAAACTAATACTTCGTGTTGCAATTACCAATGAAAATGTCAACTGAGTTGTATTTAGAAATTAGAACTGAACTCTAATTGGACTTGCTTAAACAAGGAGTTCCATTTTAATTTTAATTTGTTCATGAGCTTACACATTGTTTCCATATGCAGAAGAATGGAATGGTTAAAGAAGGAGAAGAAGTAGCCCTTGTACAAAGTGGAAGGCAACCTATATGGAGGTTCCATTCCACTCACAATATTCAGGTCCGAACAGTAGCCGCCACAAATTAA
Protein sequence

>MS.gene006203.t1

MSQVATTGSIQTSLLRPTSGSTHDRSQTLLKPPSFSSKIFPPKSNNPPKLCFTTSPINARKSSSAEVVPVSPEDDSKIEAELEKLHVLQQVGNVSGGMWSKPMVRRKTKIVCTIGPSTNTKEMIWKLAEAGMNVARMNMSHGDHASHKKVIDLVKEYNAQSKDNVIAIMLDTKGPEVRSGDLPQPILLKTGQEFTFTIQSGVGTAGCVSVNYDDFVNDVEEGDMLLVDGGMMSFLVKSKTADSVKCEVIDGGELASRRHLNVRGKSATLPSITEKDWDDIKFGVDNEVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQEEIIRICRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGSDGIMLSGETAHGKFPIKAAKVMHTVALRTEAALPSGQMPPNIGQVFKNHMSEMFAYHATMMSNTLGTSTVVFTRSGFMAILLSHYRPAGTIFAFTDQKRVQQRLALYQGVCPIYMEFSDDAEETFTKALDLLQKNGMVKEGEEVALVQSGRQPIWRFHSTHNIQVRTVAATN