AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene20039

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene20039.t1 MTR_7g100760 99.200 500 4 0 1 500 1 500 0.0 1021
MS.gene20039.t1 MTR_4g083340 93.561 497 32 0 4 500 1 497 0.0 967
MS.gene20039.t1 MTR_4g083330 88.200 500 32 2 1 500 1 473 0.0 878
MS.gene20039.t1 MTR_6g004020 77.800 491 109 0 10 500 20 510 0.0 811
MS.gene20039.t1 MTR_7g103420 42.685 499 274 7 12 500 30 526 5.91e-129 385
MS.gene20039.t1 MTR_1g091040 41.553 515 283 9 1 500 14 525 3.46e-127 380
MS.gene20039.t1 MTR_7g103420 41.829 514 272 9 12 500 30 541 3.02e-126 379
MS.gene20039.t1 MTR_1g061630 42.659 504 269 10 12 500 30 528 3.52e-124 373
MS.gene20039.t1 MTR_1g061630 42.063 504 256 10 12 500 30 512 3.21e-122 367
MS.gene20039.t1 MTR_7g103420 40.319 439 250 7 72 500 1 437 2.63e-100 308
MS.gene20039.t1 MTR_1g091040 43.768 345 188 5 157 497 47 389 1.72e-92 287
MS.gene20039.t1 MTR_5g014140 35.759 481 274 11 6 482 73 522 4.53e-88 280
MS.gene20039.t1 MTR_6g034195 36.082 485 261 12 9 482 104 550 3.96e-84 271
MS.gene20039.t1 MTR_1g099360 35.052 485 266 12 9 482 102 548 9.21e-82 265
MS.gene20039.t1 MTR_5g014140 41.317 334 182 7 6 333 73 398 6.86e-78 250
MS.gene20039.t1 MTR_1g076540 32.136 501 281 12 11 485 90 557 8.71e-73 241
MS.gene20039.t1 MTR_1g105965 32.383 491 294 11 11 488 91 556 5.47e-71 236
MS.gene20039.t1 MTR_1g105965 35.577 312 187 7 11 313 91 397 7.10e-53 184
MS.gene20039.t1 MTR_1g105965 31.481 216 135 6 11 218 91 301 2.76e-23 100
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene20039.t1 AT5G56350 89.879 494 50 0 7 500 5 498 0.0 917
MS.gene20039.t1 AT4G26390 84.105 497 79 0 4 500 1 497 0.0 875
MS.gene20039.t1 AT5G08570 78.208 491 107 0 10 500 20 510 0.0 814
MS.gene20039.t1 AT5G08570 78.208 491 107 0 10 500 20 510 0.0 814
MS.gene20039.t1 AT5G08570 78.208 491 107 0 10 500 20 510 0.0 814
MS.gene20039.t1 AT5G63680 78.093 493 108 0 8 500 18 510 0.0 813
MS.gene20039.t1 AT5G63680 78.093 493 108 0 8 500 18 510 0.0 813
MS.gene20039.t1 AT5G63680 78.093 493 108 0 8 500 18 510 0.0 813
MS.gene20039.t1 AT3G04050 74.597 496 122 3 9 500 15 510 0.0 762
MS.gene20039.t1 AT3G55650 72.177 496 134 3 9 500 15 510 0.0 734
MS.gene20039.t1 AT3G25960 72.874 494 121 4 9 500 15 497 0.0 732
MS.gene20039.t1 AT3G55810 68.952 496 132 4 9 500 15 492 0.0 682
MS.gene20039.t1 AT3G52990 43.912 501 265 9 12 500 30 526 2.52e-130 389
MS.gene20039.t1 AT2G36580 43.086 499 272 7 12 500 30 526 5.21e-129 385
MS.gene20039.t1 AT3G52990 43.187 477 255 9 36 500 1 473 3.15e-121 363
MS.gene20039.t1 AT5G52920 36.066 488 253 14 11 482 111 555 6.27e-83 268
MS.gene20039.t1 AT1G32440 39.563 412 228 10 7 412 96 492 1.73e-80 261
MS.gene20039.t1 AT3G22960 31.919 495 288 12 11 485 118 583 5.39e-72 239
MS.gene20039.t1 AT3G49160 31.855 248 148 7 91 322 349 591 1.25e-21 99.0
MS.gene20039.t1 AT3G49160 31.855 248 148 7 91 322 437 679 1.38e-21 99.0

Find 129 sgRNAs with CRISPR-Local

Find 178 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCAAATTCAGATGCATTTA+TGG 0.114929 7.2:+11405605 MS.gene20039:CDS
AAATACATCTCCATAGTTAA+TGG 0.247321 7.2:-11405916 None:intergenic
CAAAGTTTGCAACCCCTTCT+TGG 0.251729 7.2:-11405572 None:intergenic
CAGGGAAGATATTATGGTTT+GGG 0.252468 7.2:+11404993 MS.gene20039:CDS
ACTATGGAGATGTATTTAAA+AGG 0.271975 7.2:+11405922 MS.gene20039:CDS
AGCTTCAGCTCTGGTTGGCC+TGG 0.294659 7.2:-11405766 None:intergenic
AGCTTCTTCTGCAGTTAAAA+TGG 0.294876 7.2:+11405989 MS.gene20039:CDS
GAAAGACAGGGAAGATATTA+TGG 0.300369 7.2:+11404987 MS.gene20039:CDS
AGCTAAAGCAGCACTTATAT+TGG 0.310879 7.2:+11406019 MS.gene20039:CDS
TGTGAGAATTCTGCTGTTCT+AGG 0.317802 7.2:+11404907 MS.gene20039:CDS
TTTATCATGTGACAAAGAAT+TGG 0.321088 7.2:+11404867 MS.gene20039:CDS
TGATGTCGCCAATGCAGTTC+TGG 0.323821 7.2:+11405791 MS.gene20039:CDS
CAAAATTAGTGGCTAAATAC+AGG 0.342121 7.2:+11406066 MS.gene20039:CDS
TGATAAAACTGTAAATGATA+TGG 0.357198 7.2:-11404851 None:intergenic
TGATCATTGACTCCAACATC+TGG 0.357864 7.2:-11405737 None:intergenic
CAAAGGGTCTCTGCAATAAC+GGG 0.379781 7.2:+11406288 MS.gene20039:CDS
CGCCGTCATGCTCGATACTA+AGG 0.388196 7.2:+11403978 MS.gene20039:CDS
TCGTATTCTCATCACCCTTT+AGG 0.399274 7.2:-11404759 None:intergenic
GGAACTTGCTGTTCAAACTA+TGG 0.410381 7.2:+11405866 MS.gene20039:CDS
ACAGGGAAGATATTATGGTT+TGG 0.412591 7.2:+11404992 MS.gene20039:CDS
AACTGCTGCTGGAGCTTATC+CGG 0.422870 7.2:+11405845 MS.gene20039:CDS
GTTCTGATCTGGTGCAAGTT+CGG 0.424518 7.2:+11405064 MS.gene20039:CDS
GGAACGACAACAGAAAGAAT+TGG 0.428468 7.2:-11406098 None:intergenic
AGATGTATTTAAAAGGATAA+TGG 0.428807 7.2:+11405929 MS.gene20039:CDS
TTAAGACTGACACCTTTGAT+TGG 0.431136 7.2:+11406126 MS.gene20039:CDS
GCTTCAGCTCTGGTTGGCCT+GGG 0.431308 7.2:-11405765 None:intergenic
TTATCATGTGACAAAGAATT+GGG 0.435452 7.2:+11404868 MS.gene20039:CDS
GCTGAGAGTACCATTAACTA+TGG 0.439742 7.2:+11405906 MS.gene20039:CDS
CAGTAACAACAGGCTTTCCT+TGG 0.442626 7.2:-11405710 None:intergenic
TGTTCGAAAAGGTTCTGATC+TGG 0.444704 7.2:+11405053 MS.gene20039:CDS
TTTCATTACCTTGTTTCAGT+TGG 0.451778 7.2:-11404714 None:intergenic
TTACCTTGTTTCAGTTGGAT+AGG 0.452533 7.2:-11404709 None:intergenic
TAGACCTAGATGCGGGTCCC+AGG 0.456358 7.2:-11403822 None:intergenic
TCCAATGGGCTCATGGGTAC+TGG 0.457116 7.2:-11405960 None:intergenic
GGCAGGGGCCTCATCACTGC+AGG 0.458802 7.2:-11406150 None:intergenic
ATCTGGGTTGCAGTAACAAC+AGG 0.461731 7.2:-11405720 None:intergenic
ACCATGAGAGAAGTTGAATC+TGG 0.466351 7.2:-11403887 None:intergenic
ATGTGACAAAGAATTGGGTT+TGG 0.467073 7.2:+11404873 MS.gene20039:CDS
GCAGAACCTGCGCTCAGCAC+TGG 0.467151 7.2:-11406203 None:intergenic
GCACCCTGGGACCCGCATCT+AGG 0.471777 7.2:+11403818 MS.gene20039:CDS
TTGGCTGAGGATGTGAAGCC+CGG 0.472020 7.2:+11404802 MS.gene20039:CDS
ACTAAGATCGTTTGCACCCT+GGG 0.474644 7.2:+11403805 MS.gene20039:CDS
GCCAGATTCAACTTCTCTCA+TGG 0.474681 7.2:+11403886 MS.gene20039:CDS
CCACTTTGACTGAGAAAGAC+AGG 0.477943 7.2:+11404974 MS.gene20039:CDS
TAGACTCTCCAATGGGCTCA+TGG 0.478114 7.2:-11405967 None:intergenic
CAATTGGAATTTCCATTCCA+AGG 0.480988 7.2:-11405641 None:intergenic
AGAGCTGCCATGGAGAATAC+TGG 0.485585 7.2:+11403946 MS.gene20039:CDS
TCGGAATATCAAGCTATGTC+TGG 0.489128 7.2:-11406171 None:intergenic
AGGGAGTACTGCAAAATTAG+TGG 0.490170 7.2:+11406055 MS.gene20039:CDS
AGAAAGAATGTTAACCTGCC+TGG 0.492316 7.2:+11404934 MS.gene20039:CDS
AGAAATCCAGTACGAATCTC+AGG 0.495410 7.2:-11404673 None:intergenic
TCAACCGACTATAGCCTAAA+GGG 0.495846 7.2:+11404745 MS.gene20039:CDS
AATATCAAGCTATGTCTGGC+AGG 0.498082 7.2:-11406167 None:intergenic
ATAGTTTGAACAGCAAGTTC+CGG 0.501814 7.2:-11405864 None:intergenic
ACAAAGGGTCTCTGCAATAA+CGG 0.502361 7.2:+11406287 MS.gene20039:CDS
AGTGTCATACTTTGCGCAGA+TGG 0.504536 7.2:+11404826 MS.gene20039:CDS
TTCAACCGACTATAGCCTAA+AGG 0.505055 7.2:+11404744 MS.gene20039:CDS
CAGGGGCCTGAGATTCGTAC+TGG 0.505828 7.2:+11404667 MS.gene20039:intron
TGTGGTGGCTCTGCATCGCG+TGG 0.510579 7.2:+11406316 MS.gene20039:CDS
TGGTTCTCATGAGTATCATC+AGG 0.514740 7.2:+11403906 MS.gene20039:CDS
TGCGCAAAGTATGACACTCC+CGG 0.522253 7.2:-11404821 None:intergenic
CGTACTGGATTTCTCAAGGA+TGG 0.522596 7.2:+11404682 MS.gene20039:CDS
CGTAAAAGCTTCTCGACCAT+GGG 0.524474 7.2:-11403847 None:intergenic
TTGATTCCAGTGCTGAGCGC+AGG 0.525636 7.2:+11406197 MS.gene20039:CDS
AAGGTGTCAGTCTTAATCTC+AGG 0.528436 7.2:-11406119 None:intergenic
AAGTGCTGCTTTAGCTGAGT+TGG 0.530010 7.2:-11406012 None:intergenic
CGCATCTAGGTCTATTCCCA+TGG 0.531643 7.2:+11403831 MS.gene20039:CDS
TGATAATCTTAGAGCTGCCA+TGG 0.531806 7.2:+11403936 MS.gene20039:CDS
GACAGGTTGAAAACCAAGAA+GGG 0.533301 7.2:+11405559 MS.gene20039:intron
TCAGTAGCTTCAGCTCTGGT+TGG 0.537028 7.2:-11405771 None:intergenic
CTTAGCGGTGAAACTGCTGC+TGG 0.542033 7.2:+11405834 MS.gene20039:CDS
AACTAAGATCGTTTGCACCC+TGG 0.542271 7.2:+11403804 MS.gene20039:CDS
ATTCAGTATGCGAAAACAAA+GGG 0.544551 7.2:+11406272 MS.gene20039:CDS
GATCATTGACTCCAACATCT+GGG 0.548144 7.2:-11405736 None:intergenic
GACATCAGTAGCTTCAGCTC+TGG 0.552264 7.2:-11405775 None:intergenic
GGAAGATCCACTACAACTCC+AGG 0.552416 7.2:-11404952 None:intergenic
TCGTAAAAGCTTCTCGACCA+TGG 0.552997 7.2:-11403848 None:intergenic
GAACATTCTTCTCATGTCAA+AGG 0.556045 7.2:+11405110 MS.gene20039:CDS
AGACTCTCCAATGGGCTCAT+GGG 0.558290 7.2:-11405966 None:intergenic
CTGTCTTTCTCAGTCAAAGT+GGG 0.559857 7.2:-11404973 None:intergenic
GTGCAAGTTCGGAAACTGCT+AGG 0.563474 7.2:+11405075 MS.gene20039:CDS
ATCACCCTTTAGGCTATAGT+CGG 0.565528 7.2:-11404749 None:intergenic
TGTGCCATCCAGAACTGCAT+TGG 0.567212 7.2:-11405799 None:intergenic
AGACCTAGATGCGGGTCCCA+GGG 0.567340 7.2:-11403821 None:intergenic
TGACAGGTTGAAAACCAAGA+AGG 0.568293 7.2:+11405558 MS.gene20039:intron
ACCAGTACCCATGAGCCCAT+TGG 0.569139 7.2:+11405959 MS.gene20039:CDS
ATATCAAGCTATGTCTGGCA+GGG 0.569800 7.2:-11406166 None:intergenic
CCTGTCTTTCTCAGTCAAAG+TGG 0.571808 7.2:-11404974 None:intergenic
CTGCAATAACGGGGATTCTG+TGG 0.578914 7.2:+11406298 MS.gene20039:CDS
GGCACGTGGTGACCTTGGAA+TGG 0.579482 7.2:+11405629 MS.gene20039:CDS
AAGAAGCTAGACTCTCCAAT+GGG 0.579536 7.2:-11405974 None:intergenic
GATTCGTACTGGATTTCTCA+AGG 0.582404 7.2:+11404678 MS.gene20039:CDS
ACAGACTGTGTCATGCTTAG+CGG 0.586904 7.2:+11405819 MS.gene20039:CDS
ATCACTGCAGGACCAATCAA+AGG 0.592052 7.2:-11406138 None:intergenic
CAATAACGGGGATTCTGTGG+TGG 0.592591 7.2:+11406301 MS.gene20039:CDS
TCAGCACTGGAATCAATCCT+CGG 0.594323 7.2:-11406190 None:intergenic
CATTCAGTATGCGAAAACAA+AGG 0.594835 7.2:+11406271 MS.gene20039:CDS
TAAATGCATCTGAATTTGCA+AGG 0.595113 7.2:-11405602 None:intergenic
GCGCAAAGTATGACACTCCC+GGG 0.596294 7.2:-11404820 None:intergenic
ATGGTGGCACGTGGTGACCT+TGG 0.597261 7.2:+11405624 MS.gene20039:CDS
ATTTATAAGTGCAATATCCA+AGG 0.598187 7.2:+11405693 MS.gene20039:CDS
AAATTCAGATGCATTTATGG+TGG 0.599650 7.2:+11405608 MS.gene20039:CDS
TGGCTGAGGATGTGAAGCCC+GGG 0.599847 7.2:+11404803 MS.gene20039:CDS
TCACACAGAAACAACAGAAG+AGG 0.601211 7.2:+11406235 MS.gene20039:CDS
TTAGTGGCTAAATACAGGGC+AGG 0.603386 7.2:+11406071 MS.gene20039:CDS
TGATTGGTCCTGCAGTGATG+AGG 0.607592 7.2:+11406142 MS.gene20039:CDS
TGTTACTGCAACCCAGATGT+TGG 0.608418 7.2:+11405725 MS.gene20039:CDS
TGAGAAGAATGTTCTTAGCA+TGG 0.609210 7.2:-11405101 None:intergenic
CACTTTGACTGAGAAAGACA+GGG 0.613117 7.2:+11404975 MS.gene20039:CDS
AGACATAGCTTGATATTCCG+AGG 0.613725 7.2:+11406173 MS.gene20039:CDS
GAAGAAGCTAGACTCTCCAA+TGG 0.622268 7.2:-11405975 None:intergenic
TAACCTGCCTGGAGTTGTAG+TGG 0.622823 7.2:+11404945 MS.gene20039:CDS
GATCCACTACAACTCCAGGC+AGG 0.623442 7.2:-11404948 None:intergenic
GTGGTGGCTCTGCATCGCGT+GGG 0.624225 7.2:+11406317 MS.gene20039:CDS
AGGGAAGATATTATGGTTTG+GGG 0.626962 7.2:+11404994 MS.gene20039:CDS
ATGGGAATAGACCTAGATGC+GGG 0.628393 7.2:-11403829 None:intergenic
AAGAATACCAGTATTCTCCA+TGG 0.629052 7.2:-11403953 None:intergenic
GTCGCCAATGCAGTTCTGGA+TGG 0.630881 7.2:+11405795 MS.gene20039:CDS
AAACCTATCCAACTGAAACA+AGG 0.639584 7.2:+11404706 MS.gene20039:CDS
TATCAAGCTATGTCTGGCAG+GGG 0.639890 7.2:-11406165 None:intergenic
AGTCAATGATCAAATCTCCC+AGG 0.644547 7.2:+11405748 MS.gene20039:CDS
AAAATTAGTGGCTAAATACA+GGG 0.653786 7.2:+11406067 MS.gene20039:CDS
ACAGGTTGAAAACCAAGAAG+GGG 0.682754 7.2:+11405560 MS.gene20039:intron
TAATCTAAAGATGTCGACGA+TGG 0.682849 7.2:+11403762 None:intergenic
TACCTTAGTATCGAGCATGA+CGG 0.683613 7.2:-11403980 None:intergenic
CATGGGAATAGACCTAGATG+CGG 0.689751 7.2:-11403830 None:intergenic
AAAGGGTCTCTGCAATAACG+GGG 0.712446 7.2:+11406289 MS.gene20039:CDS
GATGCATTTATGGTGGCACG+TGG 0.737087 7.2:+11405615 MS.gene20039:CDS
GAACAGCAGAATTCTCACAG+CGG 0.826305 7.2:-11404903 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAAAATAAATAAAAAAA+GGG - chr7.2:11404011-11404030 None:intergenic 0.0%
!! TAAATAAAATAAATAAAAAA+AGG - chr7.2:11404012-11404031 None:intergenic 0.0%
!! AAATGAAAGATATGAAATGA+AGG - chr7.2:11404618-11404637 None:intergenic 20.0%
!! AGATGTATTTAAAAGGATAA+TGG + chr7.2:11405929-11405948 MS.gene20039:CDS 20.0%
!! AGTAGACATAAGATTATATA+AGG - chr7.2:11404143-11404162 None:intergenic 20.0%
!! ATATAATCTTATGTCTACTA+TGG + chr7.2:11404144-11404163 MS.gene20039:intron 20.0%
!! TGATAAAACTGTAAATGATA+TGG - chr7.2:11404854-11404873 None:intergenic 20.0%
!!! TTCTGATTTTTTTTTTTCCA+TGG + chr7.2:11405150-11405169 MS.gene20039:intron 20.0%
!!! TTTTTTCTAGGACAAAATTT+AGG + chr7.2:11405336-11405355 MS.gene20039:intron 20.0%
!!! TTTTTTTTTCCATGGAAAAT+AGG + chr7.2:11405158-11405177 MS.gene20039:intron 20.0%
! AAAATTAGTGGCTAAATACA+GGG + chr7.2:11406067-11406086 MS.gene20039:CDS 25.0%
! AAATACATCTCCATAGTTAA+TGG - chr7.2:11405919-11405938 None:intergenic 25.0%
! AAATTTAGGCACATTTCTTT+AGG + chr7.2:11405350-11405369 MS.gene20039:intron 25.0%
! AACTATACAAAAAACACCTA+AGG + chr7.2:11405437-11405456 MS.gene20039:intron 25.0%
! ACTATGGAGATGTATTTAAA+AGG + chr7.2:11405922-11405941 MS.gene20039:CDS 25.0%
! ATTTATAAGTGCAATATCCA+AGG + chr7.2:11405693-11405712 MS.gene20039:CDS 25.0%
! CCAATATAACACACATTAAT+AGG - chr7.2:11405258-11405277 None:intergenic 25.0%
! CCTATTAATGTGTGTTATAT+TGG + chr7.2:11405255-11405274 MS.gene20039:intron 25.0%
! TTATCATGTGACAAAGAATT+GGG + chr7.2:11404868-11404887 MS.gene20039:CDS 25.0%
! TTTATCATGTGACAAAGAAT+TGG + chr7.2:11404867-11404886 MS.gene20039:CDS 25.0%
! TTTGAAAAATTATGGATTCG+AGG + chr7.2:11405391-11405410 MS.gene20039:intron 25.0%
!! AAAAAATCACCTATTTTCCA+TGG - chr7.2:11405170-11405189 None:intergenic 25.0%
!! AGGCAAACTTTGAAAAATTA+TGG + chr7.2:11405383-11405402 MS.gene20039:intron 25.0%
!! GCAATCATGTCAATTTTATT+GGG - chr7.2:11405024-11405043 None:intergenic 25.0%
!! GCTAGAAATATTTTCTCAAT+TGG - chr7.2:11405660-11405679 None:intergenic 25.0%
!!! CTTATATTGGTTTTAACTAG+AGG + chr7.2:11406032-11406051 MS.gene20039:CDS 25.0%
!!! TTTCTTTAGGTGTTTTTTGT+AGG + chr7.2:11405363-11405382 MS.gene20039:intron 25.0%
AAAACTTAGTGCATTTCCTT+AGG - chr7.2:11405456-11405475 None:intergenic 30.0%
AAATTCAGATGCATTTATGG+TGG + chr7.2:11405608-11405627 MS.gene20039:CDS 30.0%
AGAACTAAAGAAAGTCTGTT+TGG - chr7.2:11404442-11404461 None:intergenic 30.0%
ATTCAGTATGCGAAAACAAA+GGG + chr7.2:11406272-11406291 MS.gene20039:CDS 30.0%
CAAAATTAGTGGCTAAATAC+AGG + chr7.2:11406066-11406085 MS.gene20039:CDS 30.0%
CATGAATGGCTTAATCATTT+AGG + chr7.2:11404486-11404505 MS.gene20039:intron 30.0%
TAAATGCATCTGAATTTGCA+AGG - chr7.2:11405605-11405624 None:intergenic 30.0%
TCATAAGTCAAGAACATGAA+TGG + chr7.2:11404472-11404491 MS.gene20039:intron 30.0%
TGCAAATTCAGATGCATTTA+TGG + chr7.2:11405605-11405624 MS.gene20039:CDS 30.0%
! AGTGTTTATGGTAGTGAATA+AGG - chr7.2:11404222-11404241 None:intergenic 30.0%
! CGCAATCATGTCAATTTTAT+TGG - chr7.2:11405025-11405044 None:intergenic 30.0%
! GAATCTGTTATTTGTCGTAA+AGG + chr7.2:11404174-11404193 MS.gene20039:intron 30.0%
! TTTCATTACCTTGTTTCAGT+TGG - chr7.2:11404717-11404736 None:intergenic 30.0%
!!! AGTTGCTACTGATTTTTTCT+AGG + chr7.2:11405324-11405343 MS.gene20039:intron 30.0%
!!! ATATTGGTTTTAACTAGAGG+AGG + chr7.2:11406035-11406054 MS.gene20039:CDS 30.0%
!!! TATTGGTTTTAACTAGAGGA+GGG + chr7.2:11406036-11406055 MS.gene20039:CDS 30.0%
AAACCTATCCAACTGAAACA+AGG + chr7.2:11404706-11404725 MS.gene20039:CDS 35.0%
AACTTGCAAATGTATGTGAC+AGG + chr7.2:11405542-11405561 MS.gene20039:intron 35.0%
AAGAATACCAGTATTCTCCA+TGG - chr7.2:11403956-11403975 None:intergenic 35.0%
ACAGGGAAGATATTATGGTT+TGG + chr7.2:11404992-11405011 MS.gene20039:CDS 35.0%
AGCTAAAGCAGCACTTATAT+TGG + chr7.2:11406019-11406038 MS.gene20039:CDS 35.0%
AGCTTCTTCTGCAGTTAAAA+TGG + chr7.2:11405989-11406008 MS.gene20039:CDS 35.0%
AGGGAAGATATTATGGTTTG+GGG + chr7.2:11404994-11405013 MS.gene20039:CDS 35.0%
ATAGTTTGAACAGCAAGTTC+CGG - chr7.2:11405867-11405886 None:intergenic 35.0%
ATGAAGGAACTTGAAAATGC+TGG - chr7.2:11404602-11404621 None:intergenic 35.0%
ATGTGACAAAGAATTGGGTT+TGG + chr7.2:11404873-11404892 MS.gene20039:CDS 35.0%
CAATTGGAATTTCCATTCCA+AGG - chr7.2:11405644-11405663 None:intergenic 35.0%
CAGCAATTTGCAATGTAAGT+AGG - chr7.2:11404647-11404666 None:intergenic 35.0%
CAGGGAAGATATTATGGTTT+GGG + chr7.2:11404993-11405012 MS.gene20039:CDS 35.0%
CATGCAAGCGATAGAAAAAA+AGG - chr7.2:11405481-11405500 None:intergenic 35.0%
CATTCAGTATGCGAAAACAA+AGG + chr7.2:11406271-11406290 MS.gene20039:CDS 35.0%
GAAAGACAGGGAAGATATTA+TGG + chr7.2:11404987-11405006 MS.gene20039:CDS 35.0%
GAACATTCTTCTCATGTCAA+AGG + chr7.2:11405110-11405129 MS.gene20039:CDS 35.0%
TATTTGTCGTAAAGGCTGTT+TGG + chr7.2:11404182-11404201 MS.gene20039:intron 35.0%
TGAGAAGAATGTTCTTAGCA+TGG - chr7.2:11405104-11405123 None:intergenic 35.0%
TTAAGACTGACACCTTTGAT+TGG + chr7.2:11406126-11406145 MS.gene20039:CDS 35.0%
TTACATTGCAAATTGCTGCA+GGG + chr7.2:11404649-11404668 MS.gene20039:intron 35.0%
! TTACCTTGTTTCAGTTGGAT+AGG - chr7.2:11404712-11404731 None:intergenic 35.0%
!! AACAGTCTCAGAAGTGTTTA+TGG - chr7.2:11404234-11404253 None:intergenic 35.0%
!! GTGCAAACGATCTTAGTTTT+CGG - chr7.2:11403802-11403821 None:intergenic 35.0%
!!! CTTTGTTTTCGCATACTGAA+TGG - chr7.2:11406273-11406292 None:intergenic 35.0%
AAATGAGCGCTTGTCATGAT+AGG + chr7.2:11404337-11404356 MS.gene20039:intron 40.0%
AAGAAGCTAGACTCTCCAAT+GGG - chr7.2:11405977-11405996 None:intergenic 40.0%
AATATCAAGCTATGTCTGGC+AGG - chr7.2:11406170-11406189 None:intergenic 40.0%
ACAAAGGGTCTCTGCAATAA+CGG + chr7.2:11406287-11406306 MS.gene20039:CDS 40.0%
ACCATGAGAGAAGTTGAATC+TGG - chr7.2:11403890-11403909 None:intergenic 40.0%
AGAAAGAATGTTAACCTGCC+TGG + chr7.2:11404934-11404953 MS.gene20039:CDS 40.0%
AGAAATCCAGTACGAATCTC+AGG - chr7.2:11404676-11404695 None:intergenic 40.0%
AGACATAGCTTGATATTCCG+AGG + chr7.2:11406173-11406192 MS.gene20039:CDS 40.0%
AGTCAATGATCAAATCTCCC+AGG + chr7.2:11405748-11405767 MS.gene20039:CDS 40.0%
ATATCAAGCTATGTCTGGCA+GGG - chr7.2:11406169-11406188 None:intergenic 40.0%
ATCACCCTTTAGGCTATAGT+CGG - chr7.2:11404752-11404771 None:intergenic 40.0%
CACTTTGACTGAGAAAGACA+GGG + chr7.2:11404975-11404994 MS.gene20039:CDS 40.0%
CATACATTTGCAAGTTGCAG+AGG - chr7.2:11405538-11405557 None:intergenic 40.0%
CTGCATGAGCTACAAAAAGT+TGG + chr7.2:11404783-11404802 MS.gene20039:CDS 40.0%
CTGTCTTTCTCAGTCAAAGT+GGG - chr7.2:11404976-11404995 None:intergenic 40.0%
CTTACATTGCAAATTGCTGC+AGG + chr7.2:11404648-11404667 MS.gene20039:intron 40.0%
GATTCGTACTGGATTTCTCA+AGG + chr7.2:11404678-11404697 MS.gene20039:CDS 40.0%
GGAACGACAACAGAAAGAAT+TGG - chr7.2:11406101-11406120 None:intergenic 40.0%
TACATTGCAAATTGCTGCAG+GGG + chr7.2:11404650-11404669 MS.gene20039:intron 40.0%
TACTAGCATGAGCACTTGTT+TGG - chr7.2:11404398-11404417 None:intergenic 40.0%
TCAACCGACTATAGCCTAAA+GGG + chr7.2:11404745-11404764 MS.gene20039:CDS 40.0%
TCACACAGAAACAACAGAAG+AGG + chr7.2:11406235-11406254 MS.gene20039:CDS 40.0%
TCGGAATATCAAGCTATGTC+TGG - chr7.2:11406174-11406193 None:intergenic 40.0%
TCGTATTCTCATCACCCTTT+AGG - chr7.2:11404762-11404781 None:intergenic 40.0%
TCTTTCACTGCATGCTGAAT+TGG + chr7.2:11404525-11404544 MS.gene20039:intron 40.0%
TGATAATCTTAGAGCTGCCA+TGG + chr7.2:11403936-11403955 MS.gene20039:CDS 40.0%
TGGTTCTCATGAGTATCATC+AGG + chr7.2:11403906-11403925 MS.gene20039:CDS 40.0%
TGTGAGAATTCTGCTGTTCT+AGG + chr7.2:11404907-11404926 MS.gene20039:CDS 40.0%
TTCAACCGACTATAGCCTAA+AGG + chr7.2:11404744-11404763 MS.gene20039:CDS 40.0%
TTCAGCATGCAGTGAAAGAT+AGG - chr7.2:11404524-11404543 None:intergenic 40.0%
! AAGGTGTCAGTCTTAATCTC+AGG - chr7.2:11406122-11406141 None:intergenic 40.0%
! ACAGGTTGAAAACCAAGAAG+GGG + chr7.2:11405560-11405579 MS.gene20039:intron 40.0%
! GACAGGTTGAAAACCAAGAA+GGG + chr7.2:11405559-11405578 MS.gene20039:intron 40.0%
! GCGCTATCTTTTGTTCGAAA+AGG + chr7.2:11405042-11405061 MS.gene20039:CDS 40.0%
! TACCTTAGTATCGAGCATGA+CGG - chr7.2:11403983-11404002 None:intergenic 40.0%
! TGACAGGTTGAAAACCAAGA+AGG + chr7.2:11405558-11405577 MS.gene20039:intron 40.0%
! TGTTCGAAAAGGTTCTGATC+TGG + chr7.2:11405053-11405072 MS.gene20039:CDS 40.0%
!! AGGGAGTACTGCAAAATTAG+TGG + chr7.2:11406055-11406074 MS.gene20039:CDS 40.0%
!! GATCATTGACTCCAACATCT+GGG - chr7.2:11405739-11405758 None:intergenic 40.0%
!! GCTGAGAGTACCATTAACTA+TGG + chr7.2:11405906-11405925 MS.gene20039:CDS 40.0%
!! GGAACTTGCTGTTCAAACTA+TGG + chr7.2:11405866-11405885 MS.gene20039:CDS 40.0%
!! TGATCATTGACTCCAACATC+TGG - chr7.2:11405740-11405759 None:intergenic 40.0%
AAAGGGTCTCTGCAATAACG+GGG + chr7.2:11406289-11406308 MS.gene20039:CDS 45.0%
AACTAAGATCGTTTGCACCC+TGG + chr7.2:11403804-11403823 MS.gene20039:CDS 45.0%
ACAGACTGTGTCATGCTTAG+CGG + chr7.2:11405819-11405838 MS.gene20039:CDS 45.0%
ACTAAGATCGTTTGCACCCT+GGG + chr7.2:11403805-11403824 MS.gene20039:CDS 45.0%
AGTGTCATACTTTGCGCAGA+TGG + chr7.2:11404826-11404845 MS.gene20039:CDS 45.0%
ATCACTGCAGGACCAATCAA+AGG - chr7.2:11406141-11406160 None:intergenic 45.0%
ATCTGGGTTGCAGTAACAAC+AGG - chr7.2:11405723-11405742 None:intergenic 45.0%
ATGGGAATAGACCTAGATGC+GGG - chr7.2:11403832-11403851 None:intergenic 45.0%
CAAAGGGTCTCTGCAATAAC+GGG + chr7.2:11406288-11406307 MS.gene20039:CDS 45.0%
CAAAGTTTGCAACCCCTTCT+TGG - chr7.2:11405575-11405594 None:intergenic 45.0%
CAGTAACAACAGGCTTTCCT+TGG - chr7.2:11405713-11405732 None:intergenic 45.0%
CATGGGAATAGACCTAGATG+CGG - chr7.2:11403833-11403852 None:intergenic 45.0%
CCACTTTGACTGAGAAAGAC+AGG + chr7.2:11404974-11404993 MS.gene20039:CDS 45.0%
CCTGTCTTTCTCAGTCAAAG+TGG - chr7.2:11404977-11404996 None:intergenic 45.0%
CGTAAAAGCTTCTCGACCAT+GGG - chr7.2:11403850-11403869 None:intergenic 45.0%
CGTACTGGATTTCTCAAGGA+TGG + chr7.2:11404682-11404701 MS.gene20039:CDS 45.0%
GAACAGCAGAATTCTCACAG+CGG - chr7.2:11404906-11404925 None:intergenic 45.0%
GAAGAAGCTAGACTCTCCAA+TGG - chr7.2:11405978-11405997 None:intergenic 45.0%
GAGCTACAAAAAGTTGGCTG+AGG + chr7.2:11404789-11404808 MS.gene20039:CDS 45.0%
GCCAGATTCAACTTCTCTCA+TGG + chr7.2:11403886-11403905 MS.gene20039:CDS 45.0%
GTTCTGATCTGGTGCAAGTT+CGG + chr7.2:11405064-11405083 MS.gene20039:CDS 45.0%
TATCAAGCTATGTCTGGCAG+GGG - chr7.2:11406168-11406187 None:intergenic 45.0%
TCGTAAAAGCTTCTCGACCA+TGG - chr7.2:11403851-11403870 None:intergenic 45.0%
TGTTACTGCAACCCAGATGT+TGG + chr7.2:11405725-11405744 MS.gene20039:CDS 45.0%
TTAGTGGCTAAATACAGGGC+AGG + chr7.2:11406071-11406090 MS.gene20039:CDS 45.0%
! TCAGCACTGGAATCAATCCT+CGG - chr7.2:11406193-11406212 None:intergenic 45.0%
!! AAGTGCTGCTTTAGCTGAGT+TGG - chr7.2:11406015-11406034 None:intergenic 45.0%
AACTGCTGCTGGAGCTTATC+CGG + chr7.2:11405845-11405864 MS.gene20039:CDS 50.0%
AGAGCTGCCATGGAGAATAC+TGG + chr7.2:11403946-11403965 MS.gene20039:CDS 50.0%
CGCATCTAGGTCTATTCCCA+TGG + chr7.2:11403831-11403850 MS.gene20039:CDS 50.0%
GACATCAGTAGCTTCAGCTC+TGG - chr7.2:11405778-11405797 None:intergenic 50.0%
GATGCATTTATGGTGGCACG+TGG + chr7.2:11405615-11405634 MS.gene20039:CDS 50.0%
GGAAGATCCACTACAACTCC+AGG - chr7.2:11404955-11404974 None:intergenic 50.0%
GTGCAAGTTCGGAAACTGCT+AGG + chr7.2:11405075-11405094 MS.gene20039:CDS 50.0%
TAACCTGCCTGGAGTTGTAG+TGG + chr7.2:11404945-11404964 MS.gene20039:CDS 50.0%
TGATGTCGCCAATGCAGTTC+TGG + chr7.2:11405791-11405810 MS.gene20039:CDS 50.0%
TGCGCAAAGTATGACACTCC+CGG - chr7.2:11404824-11404843 None:intergenic 50.0%
TGTGCCATCCAGAACTGCAT+TGG - chr7.2:11405802-11405821 None:intergenic 50.0%
! AGACTCTCCAATGGGCTCAT+GGG - chr7.2:11405969-11405988 None:intergenic 50.0%
! CAATAACGGGGATTCTGTGG+TGG + chr7.2:11406301-11406320 MS.gene20039:CDS 50.0%
! CTGCAATAACGGGGATTCTG+TGG + chr7.2:11406298-11406317 MS.gene20039:CDS 50.0%
! GTCGAGAAGCTTTTACGAGC+AGG + chr7.2:11403853-11403872 MS.gene20039:CDS 50.0%
! TAGACTCTCCAATGGGCTCA+TGG - chr7.2:11405970-11405989 None:intergenic 50.0%
! TCAGTAGCTTCAGCTCTGGT+TGG - chr7.2:11405774-11405793 None:intergenic 50.0%
! TGATTGGTCCTGCAGTGATG+AGG + chr7.2:11406142-11406161 MS.gene20039:CDS 50.0%
ACCAGTACCCATGAGCCCAT+TGG + chr7.2:11405959-11405978 MS.gene20039:CDS 55.0%
CGCCGTCATGCTCGATACTA+AGG + chr7.2:11403978-11403997 MS.gene20039:CDS 55.0%
CTTAGCGGTGAAACTGCTGC+TGG + chr7.2:11405834-11405853 MS.gene20039:CDS 55.0%
GATCCACTACAACTCCAGGC+AGG - chr7.2:11404951-11404970 None:intergenic 55.0%
GCGCAAAGTATGACACTCCC+GGG - chr7.2:11404823-11404842 None:intergenic 55.0%
TGGTGCGAGATGCGAGTTCA+AGG + chr7.2:11404545-11404564 MS.gene20039:intron 55.0%
TTGGCTGAGGATGTGAAGCC+CGG + chr7.2:11404802-11404821 MS.gene20039:CDS 55.0%
! TCCAATGGGCTCATGGGTAC+TGG - chr7.2:11405963-11405982 None:intergenic 55.0%
! TTGATTCCAGTGCTGAGCGC+AGG + chr7.2:11406197-11406216 MS.gene20039:CDS 55.0%
!! GTCGCCAATGCAGTTCTGGA+TGG + chr7.2:11405795-11405814 MS.gene20039:CDS 55.0%
AGACCTAGATGCGGGTCCCA+GGG - chr7.2:11403824-11403843 None:intergenic 60.0%
ATGGTGGCACGTGGTGACCT+TGG + chr7.2:11405624-11405643 MS.gene20039:CDS 60.0%
CAGGGGCCTGAGATTCGTAC+TGG + chr7.2:11404667-11404686 MS.gene20039:intron 60.0%
GGCACGTGGTGACCTTGGAA+TGG + chr7.2:11405629-11405648 MS.gene20039:CDS 60.0%
TAGACCTAGATGCGGGTCCC+AGG - chr7.2:11403825-11403844 None:intergenic 60.0%
TGGCTGAGGATGTGAAGCCC+GGG + chr7.2:11404803-11404822 MS.gene20039:CDS 60.0%
! AGCTTCAGCTCTGGTTGGCC+TGG - chr7.2:11405769-11405788 None:intergenic 60.0%
!! GCTTCAGCTCTGGTTGGCCT+GGG - chr7.2:11405768-11405787 None:intergenic 60.0%
GCAGAACCTGCGCTCAGCAC+TGG - chr7.2:11406206-11406225 None:intergenic 65.0%
! GTGGTGGCTCTGCATCGCGT+GGG + chr7.2:11406317-11406336 MS.gene20039:CDS 65.0%
! TGTGGTGGCTCTGCATCGCG+TGG + chr7.2:11406316-11406335 MS.gene20039:CDS 65.0%
GCACCCTGGGACCCGCATCT+AGG + chr7.2:11403818-11403837 MS.gene20039:CDS 70.0%
GGCAGGGGCCTCATCACTGC+AGG - chr7.2:11406153-11406172 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 11403772 11406376 11403772 ID=MS.gene20039
chr7.2 mRNA 11403772 11406376 11403772 ID=MS.gene20039.t1;Parent=MS.gene20039
chr7.2 exon 11403772 11403999 11403772 ID=MS.gene20039.t1.exon1;Parent=MS.gene20039.t1
chr7.2 CDS 11403772 11403999 11403772 ID=cds.MS.gene20039.t1;Parent=MS.gene20039.t1
chr7.2 exon 11404670 11405131 11404670 ID=MS.gene20039.t1.exon2;Parent=MS.gene20039.t1
chr7.2 CDS 11404670 11405131 11404670 ID=cds.MS.gene20039.t1;Parent=MS.gene20039.t1
chr7.2 exon 11405564 11406376 11405564 ID=MS.gene20039.t1.exon3;Parent=MS.gene20039.t1
chr7.2 CDS 11405564 11406376 11405564 ID=cds.MS.gene20039.t1;Parent=MS.gene20039.t1
Gene Sequence

>MS.gene20039

ATGTCGACGATGGTAGCAGAGAAGAAACCGAAAACTAAGATCGTTTGCACCCTGGGACCCGCATCTAGGTCTATTCCCATGGTCGAGAAGCTTTTACGAGCAGGTATGAACGTTGCCAGATTCAACTTCTCTCATGGTTCTCATGAGTATCATCAGGAAACTCTTGATAATCTTAGAGCTGCCATGGAGAATACTGGTATTCTTTGCGCCGTCATGCTCGATACTAAGGTATAAAACCCTTTTTTTATTTATTTTATTTATTATGCATCTTTAAGTTTTCTTTGTTAATGCTTTTGATTTGAATTGATAGTGTATGTATGTAATTTGTGTTTGTTATTGATGTGTGAGATGTATCAAGTTGATTTTGACCTTATATAATCTTATGTCTACTATGGATCATAAGAATCTGTTATTTGTCGTAAAGGCTGTTTGGATTGACTTATTTGACCTTATTCACTACCATAAACACTTCTGAGACTGTTTGAGAGAAGTTGTGAAAATAATTTGTGATATGTTCATGAGTTAGTTAAACTTTATTTTATCTTTTGTTATAGAAATAACTTATAAATGAGCGCTTGTCATGATAGGTGATTATGCTATAAACTGCAAATTAAGTTGTTTATCCAAACAAGTGCTCATGCTAGTAGATAAGCTCAAATAAGTCAATCCAAACAGACTTTCTTTAGTTCTTTTAATGTTTTCATAAGTCAAGAACATGAATGGCTTAATCATTTAGGCATATTACATTTCCTATCTTTCACTGCATGCTGAATTGGTGCGAGATGCGAGTTCAAGGCATTATTATTCATGAACTTAATAAAGTGAAACCAGCATTTTCAAGTTCCTTCATTTCATATCTTTCATTTTATGCACCTACTTACATTGCAAATTGCTGCAGGGGCCTGAGATTCGTACTGGATTTCTCAAGGATGGCAAACCTATCCAACTGAAACAAGGTAATGAAATAACTATTTCAACCGACTATAGCCTAAAGGGTGATGAGAATACGATCTGCATGAGCTACAAAAAGTTGGCTGAGGATGTGAAGCCCGGGAGTGTCATACTTTGCGCAGATGGAACCATATCATTTACAGTTTTATCATGTGACAAAGAATTGGGTTTGGTTCGAGTCCGCTGTGAGAATTCTGCTGTTCTAGGCGAGAGAAAGAATGTTAACCTGCCTGGAGTTGTAGTGGATCTTCCCACTTTGACTGAGAAAGACAGGGAAGATATTATGGTTTGGGGTGTTCCCAATAAAATTGACATGATTGCGCTATCTTTTGTTCGAAAAGGTTCTGATCTGGTGCAAGTTCGGAAACTGCTAGGACACCATGCTAAGAACATTCTTCTCATGTCAAAGGTATGCTATATTATGAATTTCTGATTTTTTTTTTTCCATGGAAAATAGGTGATTTTTTAGCTTGTTTAACAATGTGTCAAGAGTTCTAATCAGACATGATATCATAGAGATGTTTGCTGCATTCCTATTAATGTGTGTTATATTGGACATCATCTAACAAAATTTGAGATGCTCTTCAAAGAAAATATGTTGAGTTGCTACTGATTTTTTCTAGGACAAAATTTAGGCACATTTCTTTAGGTGTTTTTTGTAGGCAAACTTTGAAAAATTATGGATTCGAGGAAATCATAGATAGTTTAGTTAAGAACTATACAAAAAACACCTAAGGAAATGCACTAAGTTTTTTCCTTTTTTTCTATCGCTTGCATGTGTTATGTTCAATTACTTATTTCTAGTTGCTTTTCCTCTGCAACTTGCAAATGTATGTGACAGGTTGAAAACCAAGAAGGGGTTGCAAACTTTGATGATATCCTTGCAAATTCAGATGCATTTATGGTGGCACGTGGTGACCTTGGAATGGAAATTCCAATTGAGAAAATATTTCTAGCGCAGAAAGTGATGATTTATAAGTGCAATATCCAAGGAAAGCCTGTTGTTACTGCAACCCAGATGTTGGAGTCAATGATCAAATCTCCCAGGCCAACCAGAGCTGAAGCTACTGATGTCGCCAATGCAGTTCTGGATGGCACAGACTGTGTCATGCTTAGCGGTGAAACTGCTGCTGGAGCTTATCCGGAACTTGCTGTTCAAACTATGGCTAAAATTTGTGTTGAAGCTGAGAGTACCATTAACTATGGAGATGTATTTAAAAGGATAATGGAGCACTCACCAGTACCCATGAGCCCATTGGAGAGTCTAGCTTCTTCTGCAGTTAAAATGGCCAACTCAGCTAAAGCAGCACTTATATTGGTTTTAACTAGAGGAGGGAGTACTGCAAAATTAGTGGCTAAATACAGGGCAGGCATGCCAATTCTTTCTGTTGTCGTTCCTGAGATTAAGACTGACACCTTTGATTGGTCCTGCAGTGATGAGGCCCCTGCCAGACATAGCTTGATATTCCGAGGATTGATTCCAGTGCTGAGCGCAGGTTCTGCTAGAGCTTCTCACACAGAAACAACAGAAGAGGCACTAGACTTTGCCATTCAGTATGCGAAAACAAAGGGTCTCTGCAATAACGGGGATTCTGTGGTGGCTCTGCATCGCGTGGGTGTCGCATCAGTCATCAAAATCTTGACTGTGAAATGA
Protein sequence

>MS.gene20039.t1

MSTMVAEKKPKTKIVCTLGPASRSIPMVEKLLRAGMNVARFNFSHGSHEYHQETLDNLRAAMENTGILCAVMLDTKGPEIRTGFLKDGKPIQLKQGNEITISTDYSLKGDENTICMSYKKLAEDVKPGSVILCADGTISFTVLSCDKELGLVRVRCENSAVLGERKNVNLPGVVVDLPTLTEKDREDIMVWGVPNKIDMIALSFVRKGSDLVQVRKLLGHHAKNILLMSKVENQEGVANFDDILANSDAFMVARGDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETAAGAYPELAVQTMAKICVEAESTINYGDVFKRIMEHSPVPMSPLESLASSAVKMANSAKAALILVLTRGGSTAKLVAKYRAGMPILSVVVPEIKTDTFDWSCSDEAPARHSLIFRGLIPVLSAGSARASHTETTEEALDFAIQYAKTKGLCNNGDSVVALHRVGVASVIKILTVK