AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene82397


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene82397.t1 MTR_7g100760 93.600 500 32 0 1 500 1 500 0.0 969
MS.gene82397.t1 MTR_4g083330 93.400 500 6 2 1 500 1 473 0.0 943
MS.gene82397.t1 MTR_4g083340 89.336 497 53 0 4 500 1 497 0.0 926
MS.gene82397.t1 MTR_6g004020 78.819 491 104 0 10 500 20 510 0.0 818
MS.gene82397.t1 MTR_7g103420 42.485 499 275 7 12 500 30 526 1.67e-128 384
MS.gene82397.t1 MTR_1g091040 41.748 515 282 9 1 500 14 525 3.35e-127 380
MS.gene82397.t1 MTR_7g103420 41.634 514 273 9 12 500 30 541 1.01e-125 377
MS.gene82397.t1 MTR_1g061630 42.116 501 276 7 12 500 30 528 3.88e-124 373
MS.gene82397.t1 MTR_1g061630 41.517 501 263 7 12 500 30 512 7.78e-122 367
MS.gene82397.t1 MTR_7g103420 40.091 439 251 7 72 500 1 437 7.17e-100 307
MS.gene82397.t1 MTR_1g091040 41.962 367 207 5 138 500 28 392 1.85e-91 284
MS.gene82397.t1 MTR_5g014140 38.780 410 237 8 6 412 73 471 6.95e-89 283
MS.gene82397.t1 MTR_6g034195 35.787 489 265 12 9 486 104 554 5.99e-84 270
MS.gene82397.t1 MTR_1g099360 34.969 489 269 12 9 486 102 552 9.45e-83 267
MS.gene82397.t1 MTR_5g014140 41.617 334 181 7 6 333 73 398 7.87e-79 253
MS.gene82397.t1 MTR_1g076540 31.600 500 285 11 11 485 90 557 7.38e-71 236
MS.gene82397.t1 MTR_1g105965 32.383 491 294 11 11 488 91 556 1.32e-68 230
MS.gene82397.t1 MTR_1g105965 34.615 312 190 7 11 313 91 397 6.11e-51 179
MS.gene82397.t1 MTR_1g105965 30.093 216 138 6 11 218 91 301 1.19e-21 95.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene82397.t1 AT5G56350 89.271 494 53 0 7 500 5 498 0.0 908
MS.gene82397.t1 AT4G26390 83.603 494 81 0 7 500 4 497 0.0 867
MS.gene82397.t1 AT5G08570 79.022 491 103 0 10 500 20 510 0.0 821
MS.gene82397.t1 AT5G08570 79.022 491 103 0 10 500 20 510 0.0 821
MS.gene82397.t1 AT5G08570 79.022 491 103 0 10 500 20 510 0.0 821
MS.gene82397.t1 AT5G63680 78.702 493 105 0 8 500 18 510 0.0 818
MS.gene82397.t1 AT5G63680 78.702 493 105 0 8 500 18 510 0.0 818
MS.gene82397.t1 AT5G63680 78.702 493 105 0 8 500 18 510 0.0 818
MS.gene82397.t1 AT3G04050 73.790 496 126 3 9 500 15 510 0.0 758
MS.gene82397.t1 AT3G25960 72.470 494 123 4 9 500 15 497 0.0 728
MS.gene82397.t1 AT3G55650 71.169 496 139 3 9 500 15 510 0.0 726
MS.gene82397.t1 AT3G55810 67.944 496 137 4 9 500 15 492 0.0 673
MS.gene82397.t1 AT2G36580 43.487 499 270 7 12 500 30 526 2.93e-130 389
MS.gene82397.t1 AT3G52990 43.287 499 271 7 12 500 30 526 2.72e-129 386
MS.gene82397.t1 AT3G52990 42.526 475 261 7 36 500 1 473 3.63e-120 361
MS.gene82397.t1 AT5G52920 36.179 492 272 13 11 495 111 567 1.38e-84 272
MS.gene82397.t1 AT1G32440 39.320 412 229 10 7 412 96 492 4.09e-81 263
MS.gene82397.t1 AT3G22960 31.717 495 289 12 11 485 118 583 3.16e-70 235
MS.gene82397.t1 AT3G49160 31.618 272 159 9 73 322 325 591 1.53e-21 98.6
MS.gene82397.t1 AT3G49160 31.618 272 159 9 73 322 413 679 1.73e-21 98.6

Find 122 sgRNAs with CRISPR-Local

Find 162 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCAAACTCTGATGCATTTA+TGG 0.128456 4.2:+26199491 MS.gene82397:CDS
CAAAGTTTGCAACCCCTTCT+TGG 0.251729 4.2:-26199458 None:intergenic
CGTGCAAACGATCTTAGTTT+TGG 0.261618 4.2:-26197534 None:intergenic
AGGAGGGACTACTGCAAAAT+TGG 0.314986 4.2:+26199938 MS.gene82397:CDS
GTACAAGTTCGAAAACTTCT+AGG 0.320879 4.2:+26199115 MS.gene82397:CDS
TGTGAGAACTCTGCTGTTCT+AGG 0.329692 4.2:+26198947 MS.gene82397:CDS
GCAGAAGCAGCACTTAATAT+TGG 0.330688 4.2:-26200089 None:intergenic
TTACCTTGTTTCAGTTGAAT+AGG 0.334625 4.2:-26198749 None:intergenic
TGATGTTGCGAATGCAGTTC+TGG 0.344149 4.2:+26199677 MS.gene82397:CDS
GAAAGGGACTCTGCGTTAAC+GGG 0.361244 4.2:+26200174 MS.gene82397:CDS
CTTATCGTGTGACAAAGAAT+TGG 0.361638 4.2:+26198907 MS.gene82397:CDS
TTGTATTCTCATCACCCTTT+AGG 0.370256 4.2:-26198799 None:intergenic
CGATAAGACTGTAAATGATA+TGG 0.371207 4.2:-26198891 None:intergenic
AGCTTCAGCTCTGGTTGGCC+GGG 0.390347 4.2:-26199652 None:intergenic
TAGCTTCAGCTCTGGTTGGC+CGG 0.391145 4.2:-26199653 None:intergenic
CAAGGAAGATATCATGGCTT+GGG 0.397205 4.2:+26199033 MS.gene82397:CDS
CCTTTCCCTTGGCACATTGA+AGG 0.403085 4.2:-26200157 None:intergenic
GCTGAGAGCACCATTGACTA+TGG 0.403578 4.2:+26199792 MS.gene82397:CDS
GGAAAGGGACTCTGCGTTAA+CGG 0.404260 4.2:+26200173 MS.gene82397:CDS
CGCCGTCATGCTCGATACTA+AGG 0.406356 4.2:+26197712 MS.gene82397:CDS
TCAACTGACTATAGCCTAAA+GGG 0.420476 4.2:+26198785 MS.gene82397:CDS
CATGACGGCGCAGAGAATTC+CGG 0.420747 4.2:-26197699 None:intergenic
TTGTTTCAGTTGAATAGGTT+TGG 0.425807 4.2:-26198744 None:intergenic
TGCTAGAGCAGCTCTCATAT+TGG 0.437951 4.2:+26199905 MS.gene82397:CDS
AGATGTATTCAAAAGGATAA+TGG 0.438677 4.2:+26199815 MS.gene82397:CDS
GGAACGACAACAGAAAGAAT+TGG 0.441249 4.2:-26199984 None:intergenic
GCACGCTGGGACCCGCATCT+AGG 0.445382 4.2:+26197552 MS.gene82397:CDS
TTATCGTGTGACAAAGAATT+GGG 0.446712 4.2:+26198908 MS.gene82397:CDS
ACAGAAAGAATTGGCGTGCC+TGG 0.449963 4.2:-26199975 None:intergenic
GCGCTTTCATTTGTTCGAAA+AGG 0.450686 4.2:+26199082 MS.gene82397:CDS
CAAAATTGGTGGCTAAATAC+AGG 0.450918 4.2:+26199952 MS.gene82397:CDS
TGTTCGAAAAGGTTCTGATC+TGG 0.452582 4.2:+26199093 MS.gene82397:CDS
TCCAATGGGCTCATGGGTAC+TGG 0.457116 4.2:-26199846 None:intergenic
TAACGACTGATACCTTTGAT+TGG 0.457143 4.2:+26200012 MS.gene82397:CDS
AGAAATCCAGTTCGAATCTC+AGG 0.458723 4.2:-26198713 None:intergenic
ACTAAGATCGTTTGCACGCT+GGG 0.459837 4.2:+26197539 MS.gene82397:CDS
GAGAGCTGCTCTAGCAGAGT+TGG 0.462449 4.2:-26199898 None:intergenic
CTTTCCCTTGGCACATTGAA+GGG 0.463400 4.2:-26200156 None:intergenic
ATTGTACGAACAGCAAGTTC+TGG 0.463793 4.2:-26199750 None:intergenic
GAATACATCTCCATAGTCAA+TGG 0.466000 4.2:-26199802 None:intergenic
AACGCAGAGTCCCTTTCCCT+TGG 0.468309 4.2:-26200168 None:intergenic
CGCAAAAGCTTCTCGACCAT+GGG 0.471680 4.2:-26197581 None:intergenic
TAGACTCTCCAATGGGCTCA+TGG 0.478114 4.2:-26199853 None:intergenic
TTGGCTCATGATGTGAAGCC+TGG 0.480964 4.2:+26198842 MS.gene82397:CDS
CAATTGGAATTTCCATTCCA+AGG 0.480988 4.2:-26199527 None:intergenic
GCTAGATTCAACTTCTCTCA+TGG 0.485672 4.2:+26197620 MS.gene82397:CDS
GTGTGACAAAGAATTGGGTT+TGG 0.488491 4.2:+26198913 MS.gene82397:CDS
GTGCAATATCCAAGGAAAAC+CGG 0.489545 4.2:+26199587 MS.gene82397:CDS
AGAAAGAATGTTAATCTGCC+TGG 0.492316 4.2:+26198974 MS.gene82397:CDS
AATATCAAGCTATGTCTAGC+AGG 0.493341 4.2:-26200053 None:intergenic
TAGGGGCCTGAGATTCGAAC+TGG 0.499972 4.2:+26198707 MS.gene82397:intron
CTTCAATGTGCCAAGGGAAA+GGG 0.500302 4.2:+26200158 MS.gene82397:CDS
TTCAACTGACTATAGCCTAA+AGG 0.500418 4.2:+26198784 MS.gene82397:CDS
CGTTAACGGGGATTCTGTTG+TGG 0.503390 4.2:+26200187 MS.gene82397:CDS
GCTTCAGCTCTGGTTGGCCG+GGG 0.507929 4.2:-26199651 None:intergenic
CGTTACTGCGACTCAGATGT+TGG 0.507988 4.2:+26199611 MS.gene82397:CDS
ATCTGAGTCGCAGTAACGAC+CGG 0.509493 4.2:-26199606 None:intergenic
GAAAGACAAGGAAGATATCA+TGG 0.513280 4.2:+26199027 MS.gene82397:CDS
TGGTTCTCATGAGTATCATC+AGG 0.514740 4.2:+26197640 MS.gene82397:CDS
CCTTCAATGTGCCAAGGGAA+AGG 0.523286 4.2:+26200157 MS.gene82397:CDS
ACAGACTGTGTCATGCTTAG+TGG 0.525623 4.2:+26199705 MS.gene82397:CDS
ACAAGGAAGATATCATGGCT+TGG 0.526189 4.2:+26199032 MS.gene82397:CDS
AAGGTATCAGTCGTTAGCTC+AGG 0.530961 4.2:-26200005 None:intergenic
CGCATCTAGGTCTATTCCCA+TGG 0.531643 4.2:+26197565 MS.gene82397:CDS
TGATAATCTTAGAGCTGCCA+TGG 0.531806 4.2:+26197670 MS.gene82397:CDS
AGTGTCATACTCTGCGCAGA+TGG 0.532331 4.2:+26198866 MS.gene82397:CDS
ACTATGGAGATGTATTCAAA+AGG 0.538144 4.2:+26199808 MS.gene82397:CDS
GGAAGATCCACTACGACTCC+AGG 0.538876 4.2:-26198992 None:intergenic
CTTGTCTTTCTCAGTCAAAG+TGG 0.540820 4.2:-26199014 None:intergenic
AACTAAGATCGTTTGCACGC+TGG 0.542989 4.2:+26197538 MS.gene82397:CDS
TCGCAAAAGCTTCTCGACCA+TGG 0.546576 4.2:-26197582 None:intergenic
CTTAGTGGTGAAACTGCTGC+TGG 0.547208 4.2:+26199720 MS.gene82397:CDS
AACATCAGTAGCTTCAGCTC+TGG 0.547477 4.2:-26199661 None:intergenic
GGCAGGTTGAAAACCAAGAA+GGG 0.548016 4.2:+26199445 MS.gene82397:intron
GAACATTCTTCTCATGTCAA+AGG 0.556045 4.2:+26199150 MS.gene82397:CDS
AGACTCTCCAATGGGCTCAT+GGG 0.558290 4.2:-26199852 None:intergenic
AGGGACTACTGCAAAATTGG+TGG 0.560616 4.2:+26199941 MS.gene82397:CDS
CTCATATTGGTTCTAACTAG+AGG 0.560702 4.2:+26199918 MS.gene82397:CDS
TTAATATTGGAATCAATCCT+CGG 0.562918 4.2:-26200076 None:intergenic
AGAGCTGCCATGGAGAATAC+CGG 0.568658 4.2:+26197680 MS.gene82397:CDS
ACCAGTACCCATGAGCCCAT+TGG 0.569139 4.2:+26199845 MS.gene82397:CDS
TTGTCTTTCTCAGTCAAAGT+GGG 0.570627 4.2:-26199013 None:intergenic
TTTAATGGGAGATCATTTCA+CGG 0.575483 4.2:-26200252 None:intergenic
GGCACGTGGTGACCTTGGAA+TGG 0.579482 4.2:+26199515 MS.gene82397:CDS
AAGAAGCTAGACTCTCCAAT+GGG 0.579536 4.2:-26199860 None:intergenic
TTGGTGGCTAAATACAGGCC+AGG 0.581932 4.2:+26199957 MS.gene82397:CDS
TGGCAGGTTGAAAACCAAGA+AGG 0.582341 4.2:+26199444 MS.gene82397:intron
ATATCAAGCTATGTCTAGCA+GGG 0.582962 4.2:-26200052 None:intergenic
TCAGTAGCTTCAGCTCTGGT+TGG 0.584103 4.2:-26199657 None:intergenic
TGTTGTGGTTCTGCATCGCG+TGG 0.586595 4.2:+26200202 MS.gene82397:CDS
GATTCGAACTGGATTTCTCA+AGG 0.588567 4.2:+26198718 MS.gene82397:CDS
ATTTGCCCTTCAATGTGCCA+AGG 0.591498 4.2:+26200151 MS.gene82397:CDS
TAAATGCATCAGAGTTTGCA+AGG 0.592927 4.2:-26199488 None:intergenic
ATGGTGGCACGTGGTGACCT+TGG 0.597261 4.2:+26199510 MS.gene82397:CDS
ATTTATAAGTGCAATATCCA+AGG 0.598187 4.2:+26199579 MS.gene82397:CDS
AGAACTTGCTGTTCGTACAA+TGG 0.602563 4.2:+26199752 MS.gene82397:CDS
AGACATAGCTTGATATTCCG+AGG 0.602907 4.2:+26200059 MS.gene82397:CDS
GCGCAGAGTATGACACTCCC+AGG 0.606193 4.2:-26198860 None:intergenic
ATATTGGTTCTAACTAGAGG+AGG 0.607238 4.2:+26199921 MS.gene82397:CDS
CACTTTGACTGAGAAAGACA+AGG 0.607462 4.2:+26199015 MS.gene82397:CDS
TGAGAAGAATGTTCTTAGCA+TGG 0.609210 4.2:-26199141 None:intergenic
TTTGCCCTTCAATGTGCCAA+GGG 0.609763 4.2:+26200152 MS.gene82397:CDS
GTTGCGAATGCAGTTCTGGA+TGG 0.610844 4.2:+26199681 MS.gene82397:CDS
GAGAATTCCGGTATTCTCCA+TGG 0.611587 4.2:-26197687 None:intergenic
ATCACTGCATGACCAATCAA+AGG 0.619997 4.2:-26200024 None:intergenic
GAAGAAGCTAGACTCTCCAA+TGG 0.622268 4.2:-26199861 None:intergenic
TGGCTCATGATGTGAAGCCT+GGG 0.622471 4.2:+26198843 MS.gene82397:CDS
TAATCTGCCTGGAGTCGTAG+TGG 0.623976 4.2:+26198985 MS.gene82397:CDS
ATGGGAATAGACCTAGATGC+GGG 0.628393 4.2:-26197563 None:intergenic
TATTGGTTCTAACTAGAGGA+GGG 0.629589 4.2:+26199922 MS.gene82397:CDS
AAGGAAGATATCATGGCTTG+GGG 0.639801 4.2:+26199034 MS.gene82397:CDS
AGTCAATGATCAAATCTCCC+CGG 0.646746 4.2:+26199634 MS.gene82397:CDS
AAAGGGACTCTGCGTTAACG+GGG 0.647503 4.2:+26200175 MS.gene82397:CDS
GTTGTGGTTCTGCATCGCGT+GGG 0.653541 4.2:+26200203 MS.gene82397:CDS
GCAGGTTGAAAACCAAGAAG+GGG 0.675723 4.2:+26199446 MS.gene82397:intron
TACCTTAGTATCGAGCATGA+CGG 0.683613 4.2:-26197714 None:intergenic
AAACCTATTCAACTGAAACA+AGG 0.687652 4.2:+26198746 MS.gene82397:CDS
CATGGGAATAGACCTAGATG+CGG 0.689751 4.2:-26197564 None:intergenic
AAACTCTGATGCATTTATGG+TGG 0.705208 4.2:+26199494 MS.gene82397:CDS
TATCAAGCTATGTCTAGCAG+GGG 0.708675 4.2:-26200051 None:intergenic
GATGCATTTATGGTGGCACG+TGG 0.742236 4.2:+26199501 MS.gene82397:CDS
GAACAGCAGAGTTCTCACAG+CGG 0.862341 4.2:-26198943 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAAAAAAAATAAAAAA+AGG - chr4.2:26197745-26197764 None:intergenic 0.0%
!! TACTTGATTCTTAATATTTA+TGG + chr4.2:26198533-26198552 MS.gene82397:intron 15.0%
!!! CTGAAAATAATTTTTGTATT+TGG + chr4.2:26198209-26198228 MS.gene82397:intron 15.0%
!! AATTCTTATCCATACATATA+AGG - chr4.2:26197972-26197991 None:intergenic 20.0%
!! ATTAAGAATCAAGTAAAAAC+CGG - chr4.2:26198528-26198547 None:intergenic 20.0%
!! TAAAAGAACTATAGTCTATT+TGG - chr4.2:26198465-26198484 None:intergenic 20.0%
! AAGAGATAGAAAAAATCAGT+AGG - chr4.2:26199362-26199381 None:intergenic 25.0%
! AGATGTATTCAAAAGGATAA+TGG + chr4.2:26199815-26199834 MS.gene82397:CDS 25.0%
! ATTTATAAGTGCAATATCCA+AGG + chr4.2:26199579-26199598 MS.gene82397:CDS 25.0%
! TGTTAGATTAGGTTATGTTT+GGG + chr4.2:26198046-26198065 MS.gene82397:intron 25.0%
! TTAATATTGGAATCAATCCT+CGG - chr4.2:26200079-26200098 None:intergenic 25.0%
! TTACAATACTCACCAAAATA+AGG - chr4.2:26198566-26198585 None:intergenic 25.0%
!! GCAATCATGTCAATTTTATT+GGG - chr4.2:26199064-26199083 None:intergenic 25.0%
!! TTTTATAAGATGTCTTAGAG+AGG + chr4.2:26198173-26198192 MS.gene82397:intron 25.0%
!!! TATGGTTTAGAACCTTATTT+TGG + chr4.2:26198551-26198570 MS.gene82397:intron 25.0%
!!! TATTAAGAGAGTTTTAGTTG+CGG - chr4.2:26198611-26198630 None:intergenic 25.0%
!!! TGATTTTGACCTTATATGTA+TGG + chr4.2:26197960-26197979 MS.gene82397:intron 25.0%
AAACCTATTCAACTGAAACA+AGG + chr4.2:26198746-26198765 MS.gene82397:CDS 30.0%
ACAGTTCAAACATGTATTGA+CGG - chr4.2:26198029-26198048 None:intergenic 30.0%
ACTATGGAGATGTATTCAAA+AGG + chr4.2:26199808-26199827 MS.gene82397:CDS 30.0%
CATGTTTGAACTGTTAGATT+AGG + chr4.2:26198035-26198054 MS.gene82397:intron 30.0%
CGATAAGACTGTAAATGATA+TGG - chr4.2:26198894-26198913 None:intergenic 30.0%
CGGTAAAAGTCACTATTAAT+CGG - chr4.2:26198009-26198028 None:intergenic 30.0%
CTGTTAGATTAGGTTATGTT+TGG + chr4.2:26198045-26198064 MS.gene82397:intron 30.0%
TGTTTCATGCAAGTTATTAG+CGG + chr4.2:26198149-26198168 MS.gene82397:intron 30.0%
TTATCGTGTGACAAAGAATT+GGG + chr4.2:26198908-26198927 MS.gene82397:CDS 30.0%
TTGTTTCAGTTGAATAGGTT+TGG - chr4.2:26198747-26198766 None:intergenic 30.0%
! CGCAATCATGTCAATTTTAT+TGG - chr4.2:26199065-26199084 None:intergenic 30.0%
! GCGAGAAATATTTTCTCAAT+TGG - chr4.2:26199546-26199565 None:intergenic 30.0%
! TTACCTTGTTTCAGTTGAAT+AGG - chr4.2:26198752-26198771 None:intergenic 30.0%
!! ATAAAAGCATCTTCAATGTC+CGG + chr4.2:26198506-26198525 MS.gene82397:intron 30.0%
!! CAAGATTTTGATGATTGATG+CGG - chr4.2:26200231-26200250 None:intergenic 30.0%
AAACTCTGATGCATTTATGG+TGG + chr4.2:26199494-26199513 MS.gene82397:CDS 35.0%
AAGATGTCTTAGAGAGGTTA+TGG + chr4.2:26198179-26198198 MS.gene82397:intron 35.0%
AATATCAAGCTATGTCTAGC+AGG - chr4.2:26200056-26200075 None:intergenic 35.0%
AGAAAGAATGTTAATCTGCC+TGG + chr4.2:26198974-26198993 MS.gene82397:CDS 35.0%
ATATCAAGCTATGTCTAGCA+GGG - chr4.2:26200055-26200074 None:intergenic 35.0%
ATGAAGCAACTTGAAAATGC+TGG - chr4.2:26198642-26198661 None:intergenic 35.0%
CAATTGGAATTTCCATTCCA+AGG - chr4.2:26199530-26199549 None:intergenic 35.0%
CTTATCGTGTGACAAAGAAT+TGG + chr4.2:26198907-26198926 MS.gene82397:CDS 35.0%
GAAAGACAAGGAAGATATCA+TGG + chr4.2:26199027-26199046 MS.gene82397:CDS 35.0%
GAACATTCTTCTCATGTCAA+AGG + chr4.2:26199150-26199169 MS.gene82397:CDS 35.0%
GAATACATCTCCATAGTCAA+TGG - chr4.2:26199805-26199824 None:intergenic 35.0%
GTACAAGTTCGAAAACTTCT+AGG + chr4.2:26199115-26199134 MS.gene82397:CDS 35.0%
TAAATGCATCAGAGTTTGCA+AGG - chr4.2:26199491-26199510 None:intergenic 35.0%
TAACGACTGATACCTTTGAT+TGG + chr4.2:26200012-26200031 MS.gene82397:CDS 35.0%
TCAACTGACTATAGCCTAAA+GGG + chr4.2:26198785-26198804 MS.gene82397:CDS 35.0%
TCCAATAACACACATTAACG+TGG - chr4.2:26199288-26199307 None:intergenic 35.0%
TCCACGTTAATGTGTGTTAT+TGG + chr4.2:26199284-26199303 MS.gene82397:intron 35.0%
TGAGAAGAATGTTCTTAGCA+TGG - chr4.2:26199144-26199163 None:intergenic 35.0%
TGCAAACTCTGATGCATTTA+TGG + chr4.2:26199491-26199510 MS.gene82397:CDS 35.0%
TTACATTGCTCATTGCTGTA+GGG + chr4.2:26198689-26198708 MS.gene82397:intron 35.0%
TTCAACTGACTATAGCCTAA+AGG + chr4.2:26198784-26198803 MS.gene82397:CDS 35.0%
TTGTATTCTCATCACCCTTT+AGG - chr4.2:26198802-26198821 None:intergenic 35.0%
TTGTCTTTCTCAGTCAAAGT+GGG - chr4.2:26199016-26199035 None:intergenic 35.0%
! CAAAATTGGTGGCTAAATAC+AGG + chr4.2:26199952-26199971 MS.gene82397:CDS 35.0%
! TGGTGAGTATTGTAATTCGA+GGG + chr4.2:26198571-26198590 MS.gene82397:intron 35.0%
! TTGGTGAGTATTGTAATTCG+AGG + chr4.2:26198570-26198589 MS.gene82397:intron 35.0%
!! ATATTGGTTCTAACTAGAGG+AGG + chr4.2:26199921-26199940 MS.gene82397:CDS 35.0%
!! CTCATATTGGTTCTAACTAG+AGG + chr4.2:26199918-26199937 MS.gene82397:CDS 35.0%
!! GTGCAAACGATCTTAGTTTT+GGG - chr4.2:26197536-26197555 None:intergenic 35.0%
!! TATTGGTTCTAACTAGAGGA+GGG + chr4.2:26199922-26199941 MS.gene82397:CDS 35.0%
AACTTGCAAATGTATGTGGC+AGG + chr4.2:26199428-26199447 MS.gene82397:intron 40.0%
AAGAAGCTAGACTCTCCAAT+GGG - chr4.2:26199863-26199882 None:intergenic 40.0%
AAGGAAGATATCATGGCTTG+GGG + chr4.2:26199034-26199053 MS.gene82397:CDS 40.0%
ACAAGGAAGATATCATGGCT+TGG + chr4.2:26199032-26199051 MS.gene82397:CDS 40.0%
AGAAATCCAGTTCGAATCTC+AGG - chr4.2:26198716-26198735 None:intergenic 40.0%
AGACATAGCTTGATATTCCG+AGG + chr4.2:26200059-26200078 MS.gene82397:CDS 40.0%
AGTCAATGATCAAATCTCCC+CGG + chr4.2:26199634-26199653 MS.gene82397:CDS 40.0%
ATCACTGCATGACCAATCAA+AGG - chr4.2:26200027-26200046 None:intergenic 40.0%
ATTGTACGAACAGCAAGTTC+TGG - chr4.2:26199753-26199772 None:intergenic 40.0%
CAAGGAAGATATCATGGCTT+GGG + chr4.2:26199033-26199052 MS.gene82397:CDS 40.0%
CACTTTGACTGAGAAAGACA+AGG + chr4.2:26199015-26199034 MS.gene82397:CDS 40.0%
CATACATTTGCAAGTTGCAG+AGG - chr4.2:26199424-26199443 None:intergenic 40.0%
CTCCATGAGCTACAAAAAGT+TGG + chr4.2:26198823-26198842 MS.gene82397:CDS 40.0%
CTGCAACTTGCAAATGTATG+TGG + chr4.2:26199424-26199443 MS.gene82397:intron 40.0%
CTTACATTGCTCATTGCTGT+AGG + chr4.2:26198688-26198707 MS.gene82397:intron 40.0%
CTTGTCTTTCTCAGTCAAAG+TGG - chr4.2:26199017-26199036 None:intergenic 40.0%
GATTCGAACTGGATTTCTCA+AGG + chr4.2:26198718-26198737 MS.gene82397:CDS 40.0%
GCAGAAGCAGCACTTAATAT+TGG - chr4.2:26200092-26200111 None:intergenic 40.0%
GCGCTTTCATTTGTTCGAAA+AGG + chr4.2:26199082-26199101 MS.gene82397:CDS 40.0%
GCTAGATTCAACTTCTCTCA+TGG + chr4.2:26197620-26197639 MS.gene82397:CDS 40.0%
GGAACGACAACAGAAAGAAT+TGG - chr4.2:26199987-26200006 None:intergenic 40.0%
GTGCAATATCCAAGGAAAAC+CGG + chr4.2:26199587-26199606 MS.gene82397:CDS 40.0%
GTGTGACAAAGAATTGGGTT+TGG + chr4.2:26198913-26198932 MS.gene82397:CDS 40.0%
TACATTGCTCATTGCTGTAG+GGG + chr4.2:26198690-26198709 MS.gene82397:intron 40.0%
TATCAAGCTATGTCTAGCAG+GGG - chr4.2:26200054-26200073 None:intergenic 40.0%
TGATAATCTTAGAGCTGCCA+TGG + chr4.2:26197670-26197689 MS.gene82397:CDS 40.0%
TGGTTCTCATGAGTATCATC+AGG + chr4.2:26197640-26197659 MS.gene82397:CDS 40.0%
! AGCCAACTTTTTGTAGCTCA+TGG - chr4.2:26198828-26198847 None:intergenic 40.0%
! CGTGCAAACGATCTTAGTTT+TGG - chr4.2:26197537-26197556 None:intergenic 40.0%
! TACCTTAGTATCGAGCATGA+CGG - chr4.2:26197717-26197736 None:intergenic 40.0%
! TGTTCGAAAAGGTTCTGATC+TGG + chr4.2:26199093-26199112 MS.gene82397:CDS 40.0%
!! AGAACTTGCTGTTCGTACAA+TGG + chr4.2:26199752-26199771 MS.gene82397:CDS 40.0%
AACATCAGTAGCTTCAGCTC+TGG - chr4.2:26199664-26199683 None:intergenic 45.0%
AACTAAGATCGTTTGCACGC+TGG + chr4.2:26197538-26197557 MS.gene82397:CDS 45.0%
ACAGACTGTGTCATGCTTAG+TGG + chr4.2:26199705-26199724 MS.gene82397:CDS 45.0%
ACTAAGATCGTTTGCACGCT+GGG + chr4.2:26197539-26197558 MS.gene82397:CDS 45.0%
AGGAGGGACTACTGCAAAAT+TGG + chr4.2:26199938-26199957 MS.gene82397:CDS 45.0%
AGGGACTACTGCAAAATTGG+TGG + chr4.2:26199941-26199960 MS.gene82397:CDS 45.0%
ATGGGAATAGACCTAGATGC+GGG - chr4.2:26197566-26197585 None:intergenic 45.0%
ATTTGCCCTTCAATGTGCCA+AGG + chr4.2:26200151-26200170 MS.gene82397:CDS 45.0%
CAAAGTTTGCAACCCCTTCT+TGG - chr4.2:26199461-26199480 None:intergenic 45.0%
CATGGGAATAGACCTAGATG+CGG - chr4.2:26197567-26197586 None:intergenic 45.0%
CTTCAATGTGCCAAGGGAAA+GGG + chr4.2:26200158-26200177 MS.gene82397:CDS 45.0%
CTTTCCCTTGGCACATTGAA+GGG - chr4.2:26200159-26200178 None:intergenic 45.0%
GAAGAAGCTAGACTCTCCAA+TGG - chr4.2:26199864-26199883 None:intergenic 45.0%
GAGAATTCCGGTATTCTCCA+TGG - chr4.2:26197690-26197709 None:intergenic 45.0%
TGATGTTGCGAATGCAGTTC+TGG + chr4.2:26199677-26199696 MS.gene82397:CDS 45.0%
TGCTAGAGCAGCTCTCATAT+TGG + chr4.2:26199905-26199924 MS.gene82397:CDS 45.0%
TGTGAGAACTCTGCTGTTCT+AGG + chr4.2:26198947-26198966 MS.gene82397:CDS 45.0%
TTTGCCCTTCAATGTGCCAA+GGG + chr4.2:26200152-26200171 MS.gene82397:CDS 45.0%
! AAGGTATCAGTCGTTAGCTC+AGG - chr4.2:26200008-26200027 None:intergenic 45.0%
! GCAGGTTGAAAACCAAGAAG+GGG + chr4.2:26199446-26199465 MS.gene82397:intron 45.0%
! GGCAGGTTGAAAACCAAGAA+GGG + chr4.2:26199445-26199464 MS.gene82397:intron 45.0%
! TGGCAGGTTGAAAACCAAGA+AGG + chr4.2:26199444-26199463 MS.gene82397:intron 45.0%
!!! ATTTTTTATTATTTTTTTCA+TGG + chr4.2:26199188-26199207 MS.gene82397:intron 5.0%
AAAGGGACTCTGCGTTAACG+GGG + chr4.2:26200175-26200194 MS.gene82397:CDS 50.0%
ACAGAAAGAATTGGCGTGCC+TGG - chr4.2:26199978-26199997 None:intergenic 50.0%
AGAGCTGCCATGGAGAATAC+CGG + chr4.2:26197680-26197699 MS.gene82397:CDS 50.0%
AGTGTCATACTCTGCGCAGA+TGG + chr4.2:26198866-26198885 MS.gene82397:CDS 50.0%
ATCTGAGTCGCAGTAACGAC+CGG - chr4.2:26199609-26199628 None:intergenic 50.0%
CCTTCAATGTGCCAAGGGAA+AGG + chr4.2:26200157-26200176 MS.gene82397:CDS 50.0%
CCTTTCCCTTGGCACATTGA+AGG - chr4.2:26200160-26200179 None:intergenic 50.0%
CGCAAAAGCTTCTCGACCAT+GGG - chr4.2:26197584-26197603 None:intergenic 50.0%
CGCATCTAGGTCTATTCCCA+TGG + chr4.2:26197565-26197584 MS.gene82397:CDS 50.0%
CGTTAACGGGGATTCTGTTG+TGG + chr4.2:26200187-26200206 MS.gene82397:CDS 50.0%
CGTTACTGCGACTCAGATGT+TGG + chr4.2:26199611-26199630 MS.gene82397:CDS 50.0%
CTTAGTGGTGAAACTGCTGC+TGG + chr4.2:26199720-26199739 MS.gene82397:CDS 50.0%
GAAAGGGACTCTGCGTTAAC+GGG + chr4.2:26200174-26200193 MS.gene82397:CDS 50.0%
GAACAGCAGAGTTCTCACAG+CGG - chr4.2:26198946-26198965 None:intergenic 50.0%
GATGCATTTATGGTGGCACG+TGG + chr4.2:26199501-26199520 MS.gene82397:CDS 50.0%
GGAAAGGGACTCTGCGTTAA+CGG + chr4.2:26200173-26200192 MS.gene82397:CDS 50.0%
TAATCTGCCTGGAGTCGTAG+TGG + chr4.2:26198985-26199004 MS.gene82397:CDS 50.0%
TCGCAAAAGCTTCTCGACCA+TGG - chr4.2:26197585-26197604 None:intergenic 50.0%
TGGCTCATGATGTGAAGCCT+GGG + chr4.2:26198843-26198862 MS.gene82397:CDS 50.0%
TTGGCTCATGATGTGAAGCC+TGG + chr4.2:26198842-26198861 MS.gene82397:CDS 50.0%
! AGACTCTCCAATGGGCTCAT+GGG - chr4.2:26199855-26199874 None:intergenic 50.0%
! TAGACTCTCCAATGGGCTCA+TGG - chr4.2:26199856-26199875 None:intergenic 50.0%
! TCAGTAGCTTCAGCTCTGGT+TGG - chr4.2:26199660-26199679 None:intergenic 50.0%
! TTGGTGGCTAAATACAGGCC+AGG + chr4.2:26199957-26199976 MS.gene82397:CDS 50.0%
!! CAGTAACGACCGGTTTTCCT+TGG - chr4.2:26199599-26199618 None:intergenic 50.0%
!! GCTGAGAGCACCATTGACTA+TGG + chr4.2:26199792-26199811 MS.gene82397:CDS 50.0%
!! GTTGCGAATGCAGTTCTGGA+TGG + chr4.2:26199681-26199700 MS.gene82397:CDS 50.0%
AACGCAGAGTCCCTTTCCCT+TGG - chr4.2:26200171-26200190 None:intergenic 55.0%
ACCAGTACCCATGAGCCCAT+TGG + chr4.2:26199845-26199864 MS.gene82397:CDS 55.0%
CATGACGGCGCAGAGAATTC+CGG - chr4.2:26197702-26197721 None:intergenic 55.0%
CGCCGTCATGCTCGATACTA+AGG + chr4.2:26197712-26197731 MS.gene82397:CDS 55.0%
GAGAGCTGCTCTAGCAGAGT+TGG - chr4.2:26199901-26199920 None:intergenic 55.0%
GGAAGATCCACTACGACTCC+AGG - chr4.2:26198995-26199014 None:intergenic 55.0%
TAGGGGCCTGAGATTCGAAC+TGG + chr4.2:26198707-26198726 MS.gene82397:intron 55.0%
! GTCGAGAAGCTTTTGCGAGC+AGG + chr4.2:26197587-26197606 MS.gene82397:CDS 55.0%
! GTTGTGGTTCTGCATCGCGT+GGG + chr4.2:26200203-26200222 MS.gene82397:CDS 55.0%
! TAGCTTCAGCTCTGGTTGGC+CGG - chr4.2:26199656-26199675 None:intergenic 55.0%
! TCCAATGGGCTCATGGGTAC+TGG - chr4.2:26199849-26199868 None:intergenic 55.0%
! TGTTGTGGTTCTGCATCGCG+TGG + chr4.2:26200202-26200221 MS.gene82397:CDS 55.0%
ATGGTGGCACGTGGTGACCT+TGG + chr4.2:26199510-26199529 MS.gene82397:CDS 60.0%
GCGCAGAGTATGACACTCCC+AGG - chr4.2:26198863-26198882 None:intergenic 60.0%
GGCACGTGGTGACCTTGGAA+TGG + chr4.2:26199515-26199534 MS.gene82397:CDS 60.0%
! AGCTTCAGCTCTGGTTGGCC+GGG - chr4.2:26199655-26199674 None:intergenic 60.0%
! GCTTCAGCTCTGGTTGGCCG+GGG - chr4.2:26199654-26199673 None:intergenic 65.0%
GCACGCTGGGACCCGCATCT+AGG + chr4.2:26197552-26197571 MS.gene82397:CDS 70.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 26197506 26200262 26197506 ID=MS.gene82397
chr4.2 mRNA 26197506 26200262 26197506 ID=MS.gene82397.t1;Parent=MS.gene82397
chr4.2 exon 26197506 26197733 26197506 ID=MS.gene82397.t1.exon1;Parent=MS.gene82397.t1
chr4.2 CDS 26197506 26197733 26197506 ID=cds.MS.gene82397.t1;Parent=MS.gene82397.t1
chr4.2 exon 26198710 26199171 26198710 ID=MS.gene82397.t1.exon2;Parent=MS.gene82397.t1
chr4.2 CDS 26198710 26199171 26198710 ID=cds.MS.gene82397.t1;Parent=MS.gene82397.t1
chr4.2 exon 26199450 26200262 26199450 ID=MS.gene82397.t1.exon3;Parent=MS.gene82397.t1
chr4.2 CDS 26199450 26200262 26199450 ID=cds.MS.gene82397.t1;Parent=MS.gene82397.t1
Gene Sequence

>MS.gene82397

ATGGCGACGATTGTAGCAGAGAAGAAGCCCAAAACTAAGATCGTTTGCACGCTGGGACCCGCATCTAGGTCTATTCCCATGGTCGAGAAGCTTTTGCGAGCAGGTATGAACGTTGCTAGATTCAACTTCTCTCATGGTTCTCATGAGTATCATCAGGAAACTCTTGATAATCTTAGAGCTGCCATGGAGAATACCGGAATTCTCTGCGCCGTCATGCTCGATACTAAGGTATAAAACCTTTTTTTATTTTTTTTATTTTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATGTATCATGAGTTTTCTTTGATAATTGTTAATGTTTTTTATTTGAATTGATAGAGTATGTAATTTGTGTTTGTGATTGATGTGTGAGATGTATGAAGTGTATCAAGTTGATTTTGACCTTATATGTATGGATAAGAATTAAGATCAAATTTAACCGATTAATAGTGACTTTTACCGTCAATACATGTTTGAACTGTTAGATTAGGTTATGTTTGGGTAAACAACTTATGTAAGTGTTTATCATGTAAGTGTTTATTTATGAAGTATTTTTATAACAAGATAAAATAAAGTCAAACTTGTTTCATGCAAGTTATTAGCGGTTTTTATAAGATGTCTTAGAGAGGTTATGGAAATAAGCTGAAAATAATTTTTGTATTTGGATTGACTTATTTGAGCTTATCGCTAGCATAAGCACTTGTGAGAATGATGTTTGAGAGAAGTTATGAAAACTTGTGATATGTTCATGAGTTAAATGTATTTTCATAAGTCTTCAAAATAGCTTATGAAAACAGCTTATAGCTTACATGTAAACAATTAAACTTTATTTTATCTTGTCATACAAATAAGCTCACAAGTGCTTATGCTAGTAGATAAGCTCAAATATTTCAATCCAAATAGACTATAGTTCTTTTAACGCTTTTGCGCTATAATGATATAAAAGCATCTTCAATGTCCGGTTTTTACTTGATTCTTAATATTTATGGTTTAGAACCTTATTTTGGTGAGTATTGTAATTCGAGGGAGATGAGATGAATGCCGCAACTAAAACTCTCTTAATAAAGTAAAACCAGCATTTTCAAGTTGCTTCATTTCATATCTTTCATCTTATGCATCTACTTACATTGCTCATTGCTGTAGGGGCCTGAGATTCGAACTGGATTTCTCAAGGACGCCAAACCTATTCAACTGAAACAAGGTAATGAAATAACTATTTCAACTGACTATAGCCTAAAGGGTGATGAGAATACAATCTCCATGAGCTACAAAAAGTTGGCTCATGATGTGAAGCCTGGGAGTGTCATACTCTGCGCAGATGGAACCATATCATTTACAGTCTTATCGTGTGACAAAGAATTGGGTTTGGTTCAAGTCCGCTGTGAGAACTCTGCTGTTCTAGGCGAGAGAAAGAATGTTAATCTGCCTGGAGTCGTAGTGGATCTTCCCACTTTGACTGAGAAAGACAAGGAAGATATCATGGCTTGGGGAGTTCCCAATAAAATTGACATGATTGCGCTTTCATTTGTTCGAAAAGGTTCTGATCTGGTACAAGTTCGAAAACTTCTAGGACACCATGCTAAGAACATTCTTCTCATGTCAAAGGTATGCTATATTATGAATTTTTTATTATTTTTTTCATGGAATAGATGTGATTTTTGAGCTTGTTTAACAATGTGTCAAGAGTTCTAATCAGACATGATTTATGTTTACTGAATCCACGTTAATGTGTGTTATTGGACATCATCTAACAAACTTTGAGATGCTCTTCAAAGAAAATATGTTTTGAGTTCCTACTGATTTTTTCTATCTCTTGTATATGTTATGTTCAATTACTTATTTATAGTTGCTTTTCCTCTGCAACTTGCAAATGTATGTGGCAGGTTGAAAACCAAGAAGGGGTTGCAAACTTTGATGATATCCTTGCAAACTCTGATGCATTTATGGTGGCACGTGGTGACCTTGGAATGGAAATTCCAATTGAGAAAATATTTCTCGCACAGAAAGTGATGATTTATAAGTGCAATATCCAAGGAAAACCGGTCGTTACTGCGACTCAGATGTTGGAGTCAATGATCAAATCTCCCCGGCCAACCAGAGCTGAAGCTACTGATGTTGCGAATGCAGTTCTGGATGGAACAGACTGTGTCATGCTTAGTGGTGAAACTGCTGCTGGAGCTTATCCAGAACTTGCTGTTCGTACAATGGCTAAAATATGTGTTGAAGCTGAGAGCACCATTGACTATGGAGATGTATTCAAAAGGATAATGGAGCACTCACCAGTACCCATGAGCCCATTGGAGAGTCTAGCTTCTTCTGCTGTTAGAACTGCCAACTCTGCTAGAGCAGCTCTCATATTGGTTCTAACTAGAGGAGGGACTACTGCAAAATTGGTGGCTAAATACAGGCCAGGCACGCCAATTCTTTCTGTTGTCGTTCCTGAGCTAACGACTGATACCTTTGATTGGTCATGCAGTGATGAGTCCCCTGCTAGACATAGCTTGATATTCCGAGGATTGATTCCAATATTAAGTGCTGCTTCTGCTAGAGCTTCTCATGCAGAAACAACAGAAGATGCAATAGAATTTGCCCTTCAATGTGCCAAGGGAAAGGGACTCTGCGTTAACGGGGATTCTGTTGTGGTTCTGCATCGCGTGGGTACCGCATCAATCATCAAAATCTTGACCGTGAAATGA

Protein sequence

>MS.gene82397.t1

MATIVAEKKPKTKIVCTLGPASRSIPMVEKLLRAGMNVARFNFSHGSHEYHQETLDNLRAAMENTGILCAVMLDTKGPEIRTGFLKDAKPIQLKQGNEITISTDYSLKGDENTISMSYKKLAHDVKPGSVILCADGTISFTVLSCDKELGLVQVRCENSAVLGERKNVNLPGVVVDLPTLTEKDKEDIMAWGVPNKIDMIALSFVRKGSDLVQVRKLLGHHAKNILLMSKVENQEGVANFDDILANSDAFMVARGDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETAAGAYPELAVRTMAKICVEAESTIDYGDVFKRIMEHSPVPMSPLESLASSAVRTANSARAALILVLTRGGTTAKLVAKYRPGTPILSVVVPELTTDTFDWSCSDESPARHSLIFRGLIPILSAASARASHAETTEDAIEFALQCAKGKGLCVNGDSVVVLHRVGTASIIKILTVK