AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene09810


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene09810.t1 MTR_7g100760 99.200 500 4 0 1 500 1 500 0.0 1019
MS.gene09810.t1 MTR_4g083340 93.561 497 32 0 4 500 1 497 0.0 966
MS.gene09810.t1 MTR_4g083330 88.200 500 32 2 1 500 1 473 0.0 876
MS.gene09810.t1 MTR_6g004020 77.597 491 110 0 10 500 20 510 0.0 808
MS.gene09810.t1 MTR_7g103420 42.485 499 275 7 12 500 30 526 1.97e-127 381
MS.gene09810.t1 MTR_1g091040 41.359 515 284 9 1 500 14 525 1.34e-125 377
MS.gene09810.t1 MTR_7g103420 41.634 514 273 9 12 500 30 541 1.43e-124 374
MS.gene09810.t1 MTR_1g061630 42.460 504 270 10 12 500 30 528 1.18e-122 369
MS.gene09810.t1 MTR_1g061630 41.865 504 257 10 12 500 30 512 1.97e-120 363
MS.gene09810.t1 MTR_7g103420 40.091 439 251 7 72 500 1 437 1.19e-98 304
MS.gene09810.t1 MTR_1g091040 43.478 345 189 5 157 497 47 389 9.36e-91 283
MS.gene09810.t1 MTR_5g014140 35.551 481 275 11 6 482 73 522 1.27e-86 276
MS.gene09810.t1 MTR_6g034195 35.876 485 262 12 9 482 104 550 7.87e-83 268
MS.gene09810.t1 MTR_1g099360 34.845 485 267 12 9 482 102 548 2.44e-80 261
MS.gene09810.t1 MTR_5g014140 41.018 334 183 7 6 333 73 398 3.04e-76 246
MS.gene09810.t1 MTR_1g076540 31.936 501 282 12 11 485 90 557 2.56e-71 237
MS.gene09810.t1 MTR_1g105965 32.179 491 295 11 11 488 91 556 2.25e-69 232
MS.gene09810.t1 MTR_1g105965 35.256 312 188 7 11 313 91 397 2.33e-51 180
MS.gene09810.t1 MTR_1g105965 31.019 216 136 6 11 218 91 301 8.94e-22 96.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene09810.t1 AT5G56350 89.879 494 50 0 7 500 5 498 0.0 915
MS.gene09810.t1 AT4G26390 84.105 497 79 0 4 500 1 497 0.0 873
MS.gene09810.t1 AT5G08570 78.004 491 108 0 10 500 20 510 0.0 810
MS.gene09810.t1 AT5G08570 78.004 491 108 0 10 500 20 510 0.0 810
MS.gene09810.t1 AT5G08570 78.004 491 108 0 10 500 20 510 0.0 810
MS.gene09810.t1 AT5G63680 77.890 493 109 0 8 500 18 510 0.0 810
MS.gene09810.t1 AT5G63680 77.890 493 109 0 8 500 18 510 0.0 810
MS.gene09810.t1 AT5G63680 77.890 493 109 0 8 500 18 510 0.0 810
MS.gene09810.t1 AT3G04050 74.395 496 123 3 9 500 15 510 0.0 759
MS.gene09810.t1 AT3G55650 71.976 496 135 3 9 500 15 510 0.0 730
MS.gene09810.t1 AT3G25960 72.672 494 122 4 9 500 15 497 0.0 728
MS.gene09810.t1 AT3G55810 68.750 496 133 4 9 500 15 492 0.0 678
MS.gene09810.t1 AT3G52990 43.287 499 271 7 12 500 30 526 1.38e-128 384
MS.gene09810.t1 AT2G36580 42.886 499 273 7 12 500 30 526 2.42e-127 381
MS.gene09810.t1 AT3G52990 42.977 477 256 9 36 500 1 473 1.62e-119 359
MS.gene09810.t1 AT5G52920 35.876 485 258 13 11 482 111 555 2.27e-81 264
MS.gene09810.t1 AT1G32440 39.320 412 229 10 7 412 96 492 9.38e-79 257
MS.gene09810.t1 AT3G22960 31.717 495 289 12 11 485 118 583 2.28e-70 235
MS.gene09810.t1 AT3G49160 31.855 248 148 7 91 322 349 591 5.07e-22 100
MS.gene09810.t1 AT3G49160 31.855 248 148 7 91 322 437 679 5.76e-22 100

Find 126 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCAAATTCAGATGCATTTA+TGG 0.114929 7.1:+7761868 MS.gene09810:CDS
AAATACATCTCCATAGTTAA+TGG 0.247321 7.1:-7762179 None:intergenic
CAAAGTTTGCAACCCCTTCT+TGG 0.251729 7.1:-7761835 None:intergenic
CAGGGAAGATATTATGGTTT+GGG 0.252468 7.1:+7761257 MS.gene09810:CDS
ACTATGGAGATGTATTTAAA+AGG 0.271975 7.1:+7762185 MS.gene09810:CDS
AGCTTCAGCTCTGGTTGGCC+TGG 0.294659 7.1:-7762029 None:intergenic
AGCTTCTTCTGCAGTTAAAA+TGG 0.294876 7.1:+7762252 MS.gene09810:CDS
GAAAGACAGGGAAGATATTA+TGG 0.300369 7.1:+7761251 MS.gene09810:CDS
AGCTAAAGCAGCACTTATAT+TGG 0.310879 7.1:+7762282 MS.gene09810:CDS
TGTGAGAATTCTGCTGTTCT+AGG 0.317802 7.1:+7761171 MS.gene09810:CDS
TTTATCATGTGACAAAGAAT+TGG 0.321088 7.1:+7761131 MS.gene09810:CDS
TGATGTCGCCAATGCAGTTC+TGG 0.323821 7.1:+7762054 MS.gene09810:CDS
CAAAATTAGTGGCTAAATAC+AGG 0.342121 7.1:+7762329 MS.gene09810:CDS
TGATAAAACTGTAAATGATA+TGG 0.357198 7.1:-7761115 None:intergenic
TGATCATTGACTCCAACATC+TGG 0.357864 7.1:-7762000 None:intergenic
ATTGCAGAGACCCTTTGTTT+TGG 0.368851 7.1:-7762545 None:intergenic
AGAACTTGCTGTTCGAACTA+TGG 0.369701 7.1:+7762129 MS.gene09810:CDS
CAAAGGGTCTCTGCAATAAC+GGG 0.379781 7.1:+7762551 MS.gene09810:CDS
CGCCGTCATGCTCGATACTA+AGG 0.388196 7.1:+7760287 MS.gene09810:CDS
TCGTATTCTCATCACCCTTT+AGG 0.399274 7.1:-7761023 None:intergenic
ACAGGGAAGATATTATGGTT+TGG 0.412591 7.1:+7761256 MS.gene09810:CDS
GTTCTGATCTGGTGCAAGTT+CGG 0.424518 7.1:+7761328 MS.gene09810:CDS
GGAACGACAACAGAAAGAAT+TGG 0.428468 7.1:-7762361 None:intergenic
AGATGTATTTAAAAGGATAA+TGG 0.428807 7.1:+7762192 MS.gene09810:CDS
TTAAGACTGACACCTTTGAT+TGG 0.431136 7.1:+7762389 MS.gene09810:CDS
GCTTCAGCTCTGGTTGGCCT+GGG 0.431308 7.1:-7762028 None:intergenic
TTATCATGTGACAAAGAATT+GGG 0.435452 7.1:+7761132 MS.gene09810:CDS
GCTGAGAGTACCATTAACTA+TGG 0.439742 7.1:+7762169 MS.gene09810:CDS
CAGTAACAACAGGCTTTCCT+TGG 0.442626 7.1:-7761973 None:intergenic
TGTTCGAAAAGGTTCTGATC+TGG 0.444704 7.1:+7761317 MS.gene09810:CDS
TTTCATTACCTTGTTTCAGT+TGG 0.451778 7.1:-7760978 None:intergenic
TTACCTTGTTTCAGTTGGAT+AGG 0.452533 7.1:-7760973 None:intergenic
TAGACCTAGATGCGGGTCCC+AGG 0.456358 7.1:-7760131 None:intergenic
TCCAATGGGCTCATGGGTAC+TGG 0.457116 7.1:-7762223 None:intergenic
GGCAGGGGCCTCATCACTGC+AGG 0.458802 7.1:-7762413 None:intergenic
ATCTGGGTTGCAGTAACAAC+AGG 0.461731 7.1:-7761983 None:intergenic
ACCATGAGAGAAGTTGAATC+TGG 0.466351 7.1:-7760196 None:intergenic
ATGTGACAAAGAATTGGGTT+TGG 0.467073 7.1:+7761137 MS.gene09810:CDS
GCAGAACCTGCGCTCAGCAC+TGG 0.467151 7.1:-7762466 None:intergenic
ATAGTTCGAACAGCAAGTTC+TGG 0.469788 7.1:-7762127 None:intergenic
GCACCCTGGGACCCGCATCT+AGG 0.471777 7.1:+7760127 MS.gene09810:CDS
TTGGCTGAGGATGTGAAGCC+CGG 0.472020 7.1:+7761066 MS.gene09810:CDS
ACTAAGATCGTTTGCACCCT+GGG 0.474644 7.1:+7760114 MS.gene09810:CDS
GCCAGATTCAACTTCTCTCA+TGG 0.474681 7.1:+7760195 MS.gene09810:CDS
TAGACTCTCCAATGGGCTCA+TGG 0.478114 7.1:-7762230 None:intergenic
CAATTGGAATTTCCATTCCA+AGG 0.480988 7.1:-7761904 None:intergenic
AGAGCTGCCATGGAGAATAC+TGG 0.485585 7.1:+7760255 MS.gene09810:CDS
TCGGAATATCAAGCTATGTC+TGG 0.489128 7.1:-7762434 None:intergenic
AGGGAGTACTGCAAAATTAG+TGG 0.490170 7.1:+7762318 MS.gene09810:CDS
AGAAAGAATGTTAATCTGCC+TGG 0.492316 7.1:+7761198 MS.gene09810:CDS
GCACTTTGACTGAGAAAGAC+AGG 0.493010 7.1:+7761238 MS.gene09810:CDS
AGAAATCCAGTACGAATCTC+AGG 0.495410 7.1:-7760937 None:intergenic
ACAAAGGGTCTCTGCAATAA+CGG 0.495790 7.1:+7762550 MS.gene09810:CDS
TCAACCGACTATAGCCTAAA+GGG 0.495846 7.1:+7761009 MS.gene09810:CDS
AATATCAAGCTATGTCTGGC+AGG 0.498082 7.1:-7762430 None:intergenic
AGTGTCATACTTTGCGCAGA+TGG 0.504536 7.1:+7761090 MS.gene09810:CDS
TTCAACCGACTATAGCCTAA+AGG 0.505055 7.1:+7761008 MS.gene09810:CDS
CAGGGGCCTGAGATTCGTAC+TGG 0.505828 7.1:+7760931 MS.gene09810:intron
TGTGGTGGCTCTGCATCGCG+TGG 0.510579 7.1:+7762579 MS.gene09810:CDS
TGGTTCTCATGAGTATCATC+AGG 0.514740 7.1:+7760215 MS.gene09810:CDS
TGCGCAAAGTATGACACTCC+CGG 0.522253 7.1:-7761085 None:intergenic
CGTACTGGATTTCTCAAGGA+TGG 0.522596 7.1:+7760946 MS.gene09810:CDS
CGTAAAAGCTTCTCGACCAT+GGG 0.524474 7.1:-7760156 None:intergenic
TTGATTCCAGTGCTGAGCGC+AGG 0.525636 7.1:+7762460 MS.gene09810:CDS
AAGGTGTCAGTCTTAATCTC+AGG 0.528436 7.1:-7762382 None:intergenic
AAGTGCTGCTTTAGCTGAGT+TGG 0.530010 7.1:-7762275 None:intergenic
CGCATCTAGGTCTATTCCCA+TGG 0.531643 7.1:+7760140 MS.gene09810:CDS
TGATAATCTTAGAGCTGCCA+TGG 0.531806 7.1:+7760245 MS.gene09810:CDS
GACAGGTTGAAAACCAAGAA+GGG 0.533301 7.1:+7761822 MS.gene09810:intron
CGAAGATCCACTACAACTCC+AGG 0.536004 7.1:-7761216 None:intergenic
TCAGTAGCTTCAGCTCTGGT+TGG 0.537028 7.1:-7762034 None:intergenic
CTTAGCGGTGAAACTGCTGC+TGG 0.542033 7.1:+7762097 MS.gene09810:CDS
AACTAAGATCGTTTGCACCC+TGG 0.542271 7.1:+7760113 MS.gene09810:CDS
ATTCAGTATGCCAAAACAAA+GGG 0.544551 7.1:+7762535 MS.gene09810:CDS
GATCATTGACTCCAACATCT+GGG 0.548144 7.1:-7761999 None:intergenic
GACATCAGTAGCTTCAGCTC+TGG 0.552264 7.1:-7762038 None:intergenic
TCGTAAAAGCTTCTCGACCA+TGG 0.552997 7.1:-7760157 None:intergenic
GAACATTCTTCTCATGTCAA+AGG 0.556045 7.1:+7761374 MS.gene09810:CDS
AGACTCTCCAATGGGCTCAT+GGG 0.558290 7.1:-7762229 None:intergenic
GTGCAAGTTCGGAAACTGCT+AGG 0.563474 7.1:+7761339 MS.gene09810:CDS
ATCACCCTTTAGGCTATAGT+CGG 0.565528 7.1:-7761013 None:intergenic
TGTGCCATCCAGAACTGCAT+TGG 0.567212 7.1:-7762062 None:intergenic
AGACCTAGATGCGGGTCCCA+GGG 0.567340 7.1:-7760130 None:intergenic
TGACAGGTTGAAAACCAAGA+AGG 0.568293 7.1:+7761821 MS.gene09810:intron
ACCAGTACCCATGAGCCCAT+TGG 0.569139 7.1:+7762222 MS.gene09810:CDS
ATATCAAGCTATGTCTGGCA+GGG 0.569800 7.1:-7762429 None:intergenic
CTGCAATAACGGGGATTCTG+TGG 0.578914 7.1:+7762561 MS.gene09810:CDS
GGCACGTGGTGACCTTGGAA+TGG 0.579482 7.1:+7761892 MS.gene09810:CDS
AAGAAGCTAGACTCTCCAAT+GGG 0.579536 7.1:-7762237 None:intergenic
GATTCGTACTGGATTTCTCA+AGG 0.582404 7.1:+7760942 MS.gene09810:CDS
ACAGACTGTGTCATGCTTAG+CGG 0.586904 7.1:+7762082 MS.gene09810:CDS
ATCACTGCAGGACCAATCAA+AGG 0.592052 7.1:-7762401 None:intergenic
CAATAACGGGGATTCTGTGG+TGG 0.592591 7.1:+7762564 MS.gene09810:CDS
TCAGCACTGGAATCAATCCT+CGG 0.594323 7.1:-7762453 None:intergenic
TAAATGCATCTGAATTTGCA+AGG 0.595113 7.1:-7761865 None:intergenic
GCGCAAAGTATGACACTCCC+GGG 0.596294 7.1:-7761084 None:intergenic
ATGGTGGCACGTGGTGACCT+TGG 0.597261 7.1:+7761887 MS.gene09810:CDS
ATTTATAAGTGCAATATCCA+AGG 0.598187 7.1:+7761956 MS.gene09810:CDS
AAATTCAGATGCATTTATGG+TGG 0.599650 7.1:+7761871 MS.gene09810:CDS
TGGCTGAGGATGTGAAGCCC+GGG 0.599847 7.1:+7761067 MS.gene09810:CDS
TCACACAGAAACAACAGAAG+AGG 0.601211 7.1:+7762498 MS.gene09810:CDS
TTAGTGGCTAAATACAGGGC+AGG 0.603386 7.1:+7762334 MS.gene09810:CDS
TGATTGGTCCTGCAGTGATG+AGG 0.607592 7.1:+7762405 MS.gene09810:CDS
TGTTACTGCAACCCAGATGT+TGG 0.608418 7.1:+7761988 MS.gene09810:CDS
CATTCAGTATGCCAAAACAA+AGG 0.608524 7.1:+7762534 MS.gene09810:CDS
TGAGAAGAATGTTCTTAGCA+TGG 0.609210 7.1:-7761365 None:intergenic
CACTTTGACTGAGAAAGACA+GGG 0.613117 7.1:+7761239 MS.gene09810:CDS
AGACATAGCTTGATATTCCG+AGG 0.613725 7.1:+7762436 MS.gene09810:CDS
TAATCTGCCTGGAGTTGTAG+TGG 0.614488 7.1:+7761209 MS.gene09810:CDS
GAAGAAGCTAGACTCTCCAA+TGG 0.622268 7.1:-7762238 None:intergenic
GTGGTGGCTCTGCATCGCGT+GGG 0.624225 7.1:+7762580 MS.gene09810:CDS
AGGGAAGATATTATGGTTTG+GGG 0.626962 7.1:+7761258 MS.gene09810:CDS
ATGGGAATAGACCTAGATGC+GGG 0.628393 7.1:-7760138 None:intergenic
AAGAATACCAGTATTCTCCA+TGG 0.629052 7.1:-7760262 None:intergenic
GTCGCCAATGCAGTTCTGGA+TGG 0.630881 7.1:+7762058 MS.gene09810:CDS
AAACCTATCCAACTGAAACA+AGG 0.639584 7.1:+7760970 MS.gene09810:CDS
TATCAAGCTATGTCTGGCAG+GGG 0.639890 7.1:-7762428 None:intergenic
AGTCAATGATCAAATCTCCC+AGG 0.644547 7.1:+7762011 MS.gene09810:CDS
AAAATTAGTGGCTAAATACA+GGG 0.653786 7.1:+7762330 MS.gene09810:CDS
ACAGGTTGAAAACCAAGAAG+GGG 0.682754 7.1:+7761823 MS.gene09810:intron
TAATCTAAAGATGTCGACGA+TGG 0.682849 7.1:+7760071 None:intergenic
TACCTTAGTATCGAGCATGA+CGG 0.683613 7.1:-7760289 None:intergenic
CATGGGAATAGACCTAGATG+CGG 0.689751 7.1:-7760139 None:intergenic
AAAGGGTCTCTGCAATAACG+GGG 0.712446 7.1:+7762552 MS.gene09810:CDS
GATGCATTTATGGTGGCACG+TGG 0.737087 7.1:+7761878 MS.gene09810:CDS
GAACAGCAGAATTCTCACAG+CGG 0.826305 7.1:-7761167 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAAAATAAATAAATAAA+GGG - chr7.1:7760320-7760339 None:intergenic 0.0%
!! TAAATAAAATAAATAAATAA+AGG - chr7.1:7760321-7760340 None:intergenic 0.0%
!! AAATGAAAGATATGAAATGA+AGG - chr7.1:7760882-7760901 None:intergenic 20.0%
!! AGATGTATTTAAAAGGATAA+TGG + chr7.1:7762192-7762211 MS.gene09810:CDS 20.0%
!! AGTAGACATAAGATTATATA+AGG - chr7.1:7760451-7760470 None:intergenic 20.0%
!! ATATAATCTTATGTCTACTA+TGG + chr7.1:7760452-7760471 MS.gene09810:intron 20.0%
!! TGATAAAACTGTAAATGATA+TGG - chr7.1:7761118-7761137 None:intergenic 20.0%
!!! TTTCTGATTTTTTTTTTCCA+TGG + chr7.1:7761413-7761432 MS.gene09810:intron 20.0%
!!! TTTTTTCTAGGACAAAATTT+AGG + chr7.1:7761599-7761618 MS.gene09810:intron 20.0%
!!! TTTTTTTTTCCATGGAAAAT+AGG + chr7.1:7761421-7761440 MS.gene09810:intron 20.0%
! AAAATTAGTGGCTAAATACA+GGG + chr7.1:7762330-7762349 MS.gene09810:CDS 25.0%
! AAATACATCTCCATAGTTAA+TGG - chr7.1:7762182-7762201 None:intergenic 25.0%
! AAATTTAGGCACATTTCTTT+AGG + chr7.1:7761613-7761632 MS.gene09810:intron 25.0%
! AACTATACAAAAAACACCTA+AGG + chr7.1:7761700-7761719 MS.gene09810:intron 25.0%
! ACTATGGAGATGTATTTAAA+AGG + chr7.1:7762185-7762204 MS.gene09810:CDS 25.0%
! ATTTATAAGTGCAATATCCA+AGG + chr7.1:7761956-7761975 MS.gene09810:CDS 25.0%
! CCAATATAACACACATTAAT+AGG - chr7.1:7761521-7761540 None:intergenic 25.0%
! CCTATTAATGTGTGTTATAT+TGG + chr7.1:7761518-7761537 MS.gene09810:intron 25.0%
! TTATCATGTGACAAAGAATT+GGG + chr7.1:7761132-7761151 MS.gene09810:CDS 25.0%
! TTTATCATGTGACAAAGAAT+TGG + chr7.1:7761131-7761150 MS.gene09810:CDS 25.0%
! TTTGAAAAATTATGGATTCG+AGG + chr7.1:7761654-7761673 MS.gene09810:intron 25.0%
!! AAAAAATCACCTATTTTCCA+TGG - chr7.1:7761433-7761452 None:intergenic 25.0%
!! AGGCAAACTTTGAAAAATTA+TGG + chr7.1:7761646-7761665 MS.gene09810:intron 25.0%
!! GCAATCATGTCAATTTTATT+GGG - chr7.1:7761288-7761307 None:intergenic 25.0%
!! GCTAGAAATATTTTCTCAAT+TGG - chr7.1:7761923-7761942 None:intergenic 25.0%
!!! CTTATATTGGTTTTAACTAG+AGG + chr7.1:7762295-7762314 MS.gene09810:CDS 25.0%
!!! TTTCTTTAGGTGTTTTTTGT+AGG + chr7.1:7761626-7761645 MS.gene09810:intron 25.0%
AAAACTTAGTGCATTTCCTT+AGG - chr7.1:7761719-7761738 None:intergenic 30.0%
AAATTCAGATGCATTTATGG+TGG + chr7.1:7761871-7761890 MS.gene09810:CDS 30.0%
AGAACTAAAGAAAGTCTGTT+TGG - chr7.1:7760706-7760725 None:intergenic 30.0%
ATTCAGTATGCCAAAACAAA+GGG + chr7.1:7762535-7762554 MS.gene09810:CDS 30.0%
CAAAATTAGTGGCTAAATAC+AGG + chr7.1:7762329-7762348 MS.gene09810:CDS 30.0%
CATGAATGGCTTAATCATTT+AGG + chr7.1:7760750-7760769 MS.gene09810:intron 30.0%
TAAATGCATCTGAATTTGCA+AGG - chr7.1:7761868-7761887 None:intergenic 30.0%
TCATAAGTCAAGAACATGAA+TGG + chr7.1:7760736-7760755 MS.gene09810:intron 30.0%
TGCAAATTCAGATGCATTTA+TGG + chr7.1:7761868-7761887 MS.gene09810:CDS 30.0%
! AGTGTTTATGGTAGTGAATA+AGG - chr7.1:7760530-7760549 None:intergenic 30.0%
! CGCAATCATGTCAATTTTAT+TGG - chr7.1:7761289-7761308 None:intergenic 30.0%
! GAATCTGTTATTTGTCGTAA+AGG + chr7.1:7760482-7760501 MS.gene09810:intron 30.0%
! TTTCATTACCTTGTTTCAGT+TGG - chr7.1:7760981-7761000 None:intergenic 30.0%
!!! AGTTGCTACTGATTTTTTCT+AGG + chr7.1:7761587-7761606 MS.gene09810:intron 30.0%
!!! ATATTGGTTTTAACTAGAGG+AGG + chr7.1:7762298-7762317 MS.gene09810:CDS 30.0%
!!! TATTGGTTTTAACTAGAGGA+GGG + chr7.1:7762299-7762318 MS.gene09810:CDS 30.0%
AAACCTATCCAACTGAAACA+AGG + chr7.1:7760970-7760989 MS.gene09810:CDS 35.0%
AACTTGCAAATGTATGTGAC+AGG + chr7.1:7761805-7761824 MS.gene09810:intron 35.0%
AAGAATACCAGTATTCTCCA+TGG - chr7.1:7760265-7760284 None:intergenic 35.0%
ACAGGGAAGATATTATGGTT+TGG + chr7.1:7761256-7761275 MS.gene09810:CDS 35.0%
AGAAAGAATGTTAATCTGCC+TGG + chr7.1:7761198-7761217 MS.gene09810:CDS 35.0%
AGCTAAAGCAGCACTTATAT+TGG + chr7.1:7762282-7762301 MS.gene09810:CDS 35.0%
AGCTTCTTCTGCAGTTAAAA+TGG + chr7.1:7762252-7762271 MS.gene09810:CDS 35.0%
AGGGAAGATATTATGGTTTG+GGG + chr7.1:7761258-7761277 MS.gene09810:CDS 35.0%
ATGAAGGAACTTGAAAATGC+TGG - chr7.1:7760866-7760885 None:intergenic 35.0%
ATGTGACAAAGAATTGGGTT+TGG + chr7.1:7761137-7761156 MS.gene09810:CDS 35.0%
CAATTGGAATTTCCATTCCA+AGG - chr7.1:7761907-7761926 None:intergenic 35.0%
CAGCAATTTGCAATGTAAGT+AGG - chr7.1:7760911-7760930 None:intergenic 35.0%
CAGGGAAGATATTATGGTTT+GGG + chr7.1:7761257-7761276 MS.gene09810:CDS 35.0%
CATGCAAGCGATAGAAAAAA+AGG - chr7.1:7761744-7761763 None:intergenic 35.0%
CATTCAGTATGCCAAAACAA+AGG + chr7.1:7762534-7762553 MS.gene09810:CDS 35.0%
GAAAGACAGGGAAGATATTA+TGG + chr7.1:7761251-7761270 MS.gene09810:CDS 35.0%
GAACATTCTTCTCATGTCAA+AGG + chr7.1:7761374-7761393 MS.gene09810:CDS 35.0%
TATTTGTCGTAAAGGCTGTT+TGG + chr7.1:7760490-7760509 MS.gene09810:intron 35.0%
TGAGAAGAATGTTCTTAGCA+TGG - chr7.1:7761368-7761387 None:intergenic 35.0%
TTAAGACTGACACCTTTGAT+TGG + chr7.1:7762389-7762408 MS.gene09810:CDS 35.0%
TTACATTGCAAATTGCTGCA+GGG + chr7.1:7760913-7760932 MS.gene09810:intron 35.0%
! TTACCTTGTTTCAGTTGGAT+AGG - chr7.1:7760976-7760995 None:intergenic 35.0%
!! AACAGTCTCAGAAGTGTTTA+TGG - chr7.1:7760542-7760561 None:intergenic 35.0%
!! GTGCAAACGATCTTAGTTTT+CGG - chr7.1:7760111-7760130 None:intergenic 35.0%
!!! CTTTGTTTTGGCATACTGAA+TGG - chr7.1:7762536-7762555 None:intergenic 35.0%
AAATGAGCGCTTGTCATGAT+AGG + chr7.1:7760645-7760664 MS.gene09810:intron 40.0%
AAGAAGCTAGACTCTCCAAT+GGG - chr7.1:7762240-7762259 None:intergenic 40.0%
AATATCAAGCTATGTCTGGC+AGG - chr7.1:7762433-7762452 None:intergenic 40.0%
ACAAAGGGTCTCTGCAATAA+CGG + chr7.1:7762550-7762569 MS.gene09810:CDS 40.0%
ACCATGAGAGAAGTTGAATC+TGG - chr7.1:7760199-7760218 None:intergenic 40.0%
AGAAATCCAGTACGAATCTC+AGG - chr7.1:7760940-7760959 None:intergenic 40.0%
AGACATAGCTTGATATTCCG+AGG + chr7.1:7762436-7762455 MS.gene09810:CDS 40.0%
AGTCAATGATCAAATCTCCC+AGG + chr7.1:7762011-7762030 MS.gene09810:CDS 40.0%
ATAGTTCGAACAGCAAGTTC+TGG - chr7.1:7762130-7762149 None:intergenic 40.0%
ATATCAAGCTATGTCTGGCA+GGG - chr7.1:7762432-7762451 None:intergenic 40.0%
ATCACCCTTTAGGCTATAGT+CGG - chr7.1:7761016-7761035 None:intergenic 40.0%
CACTTTGACTGAGAAAGACA+GGG + chr7.1:7761239-7761258 MS.gene09810:CDS 40.0%
CATACATTTGCAAGTTGCAG+AGG - chr7.1:7761801-7761820 None:intergenic 40.0%
CTGCATGAGCTACAAAAAGT+TGG + chr7.1:7761047-7761066 MS.gene09810:CDS 40.0%
CTTACATTGCAAATTGCTGC+AGG + chr7.1:7760912-7760931 MS.gene09810:intron 40.0%
GATTCGTACTGGATTTCTCA+AGG + chr7.1:7760942-7760961 MS.gene09810:CDS 40.0%
GGAACGACAACAGAAAGAAT+TGG - chr7.1:7762364-7762383 None:intergenic 40.0%
TACATTGCAAATTGCTGCAG+GGG + chr7.1:7760914-7760933 MS.gene09810:intron 40.0%
TCAACCGACTATAGCCTAAA+GGG + chr7.1:7761009-7761028 MS.gene09810:CDS 40.0%
TCACACAGAAACAACAGAAG+AGG + chr7.1:7762498-7762517 MS.gene09810:CDS 40.0%
TCGGAATATCAAGCTATGTC+TGG - chr7.1:7762437-7762456 None:intergenic 40.0%
TCGTATTCTCATCACCCTTT+AGG - chr7.1:7761026-7761045 None:intergenic 40.0%
TCTTTCACTGCATGCTGAAT+TGG + chr7.1:7760789-7760808 MS.gene09810:intron 40.0%
TGATAATCTTAGAGCTGCCA+TGG + chr7.1:7760245-7760264 MS.gene09810:CDS 40.0%
TGGTTCTCATGAGTATCATC+AGG + chr7.1:7760215-7760234 MS.gene09810:CDS 40.0%
TGTGAGAATTCTGCTGTTCT+AGG + chr7.1:7761171-7761190 MS.gene09810:CDS 40.0%
TTCAACCGACTATAGCCTAA+AGG + chr7.1:7761008-7761027 MS.gene09810:CDS 40.0%
TTCAGCATGCAGTGAAAGAT+AGG - chr7.1:7760788-7760807 None:intergenic 40.0%
! AAGGTGTCAGTCTTAATCTC+AGG - chr7.1:7762385-7762404 None:intergenic 40.0%
! ACAGGTTGAAAACCAAGAAG+GGG + chr7.1:7761823-7761842 MS.gene09810:intron 40.0%
! GACAGGTTGAAAACCAAGAA+GGG + chr7.1:7761822-7761841 MS.gene09810:intron 40.0%
! GCGCTATCTTTTGTTCGAAA+AGG + chr7.1:7761306-7761325 MS.gene09810:CDS 40.0%
! TACCTTAGTATCGAGCATGA+CGG - chr7.1:7760292-7760311 None:intergenic 40.0%
! TGACAGGTTGAAAACCAAGA+AGG + chr7.1:7761821-7761840 MS.gene09810:intron 40.0%
! TGTTCGAAAAGGTTCTGATC+TGG + chr7.1:7761317-7761336 MS.gene09810:CDS 40.0%
!! AGAACTTGCTGTTCGAACTA+TGG + chr7.1:7762129-7762148 MS.gene09810:CDS 40.0%
!! AGGGAGTACTGCAAAATTAG+TGG + chr7.1:7762318-7762337 MS.gene09810:CDS 40.0%
!! ATTGCAGAGACCCTTTGTTT+TGG - chr7.1:7762548-7762567 None:intergenic 40.0%
!! GATCATTGACTCCAACATCT+GGG - chr7.1:7762002-7762021 None:intergenic 40.0%
!! GCTGAGAGTACCATTAACTA+TGG + chr7.1:7762169-7762188 MS.gene09810:CDS 40.0%
!! TGATCATTGACTCCAACATC+TGG - chr7.1:7762003-7762022 None:intergenic 40.0%
AAAGGGTCTCTGCAATAACG+GGG + chr7.1:7762552-7762571 MS.gene09810:CDS 45.0%
AACTAAGATCGTTTGCACCC+TGG + chr7.1:7760113-7760132 MS.gene09810:CDS 45.0%
ACAGACTGTGTCATGCTTAG+CGG + chr7.1:7762082-7762101 MS.gene09810:CDS 45.0%
ACTAAGATCGTTTGCACCCT+GGG + chr7.1:7760114-7760133 MS.gene09810:CDS 45.0%
AGTGTCATACTTTGCGCAGA+TGG + chr7.1:7761090-7761109 MS.gene09810:CDS 45.0%
ATCACTGCAGGACCAATCAA+AGG - chr7.1:7762404-7762423 None:intergenic 45.0%
ATCTGGGTTGCAGTAACAAC+AGG - chr7.1:7761986-7762005 None:intergenic 45.0%
ATGGGAATAGACCTAGATGC+GGG - chr7.1:7760141-7760160 None:intergenic 45.0%
CAAAGGGTCTCTGCAATAAC+GGG + chr7.1:7762551-7762570 MS.gene09810:CDS 45.0%
CAAAGTTTGCAACCCCTTCT+TGG - chr7.1:7761838-7761857 None:intergenic 45.0%
CAGTAACAACAGGCTTTCCT+TGG - chr7.1:7761976-7761995 None:intergenic 45.0%
CATGGGAATAGACCTAGATG+CGG - chr7.1:7760142-7760161 None:intergenic 45.0%
CGTAAAAGCTTCTCGACCAT+GGG - chr7.1:7760159-7760178 None:intergenic 45.0%
CGTACTGGATTTCTCAAGGA+TGG + chr7.1:7760946-7760965 MS.gene09810:CDS 45.0%
GAACAGCAGAATTCTCACAG+CGG - chr7.1:7761170-7761189 None:intergenic 45.0%
GAAGAAGCTAGACTCTCCAA+TGG - chr7.1:7762241-7762260 None:intergenic 45.0%
GAGCTACAAAAAGTTGGCTG+AGG + chr7.1:7761053-7761072 MS.gene09810:CDS 45.0%
GCACTTTGACTGAGAAAGAC+AGG + chr7.1:7761238-7761257 MS.gene09810:CDS 45.0%
GCCAGATTCAACTTCTCTCA+TGG + chr7.1:7760195-7760214 MS.gene09810:CDS 45.0%
GTTCTGATCTGGTGCAAGTT+CGG + chr7.1:7761328-7761347 MS.gene09810:CDS 45.0%
TAATCTGCCTGGAGTTGTAG+TGG + chr7.1:7761209-7761228 MS.gene09810:CDS 45.0%
TATCAAGCTATGTCTGGCAG+GGG - chr7.1:7762431-7762450 None:intergenic 45.0%
TCGTAAAAGCTTCTCGACCA+TGG - chr7.1:7760160-7760179 None:intergenic 45.0%
TGTTACTGCAACCCAGATGT+TGG + chr7.1:7761988-7762007 MS.gene09810:CDS 45.0%
TTAGTGGCTAAATACAGGGC+AGG + chr7.1:7762334-7762353 MS.gene09810:CDS 45.0%
! TCAGCACTGGAATCAATCCT+CGG - chr7.1:7762456-7762475 None:intergenic 45.0%
!! AAGTGCTGCTTTAGCTGAGT+TGG - chr7.1:7762278-7762297 None:intergenic 45.0%
AGAGCTGCCATGGAGAATAC+TGG + chr7.1:7760255-7760274 MS.gene09810:CDS 50.0%
CGAAGATCCACTACAACTCC+AGG - chr7.1:7761219-7761238 None:intergenic 50.0%
CGCATCTAGGTCTATTCCCA+TGG + chr7.1:7760140-7760159 MS.gene09810:CDS 50.0%
GACATCAGTAGCTTCAGCTC+TGG - chr7.1:7762041-7762060 None:intergenic 50.0%
GATGCATTTATGGTGGCACG+TGG + chr7.1:7761878-7761897 MS.gene09810:CDS 50.0%
GTGCAAGTTCGGAAACTGCT+AGG + chr7.1:7761339-7761358 MS.gene09810:CDS 50.0%
TGATGTCGCCAATGCAGTTC+TGG + chr7.1:7762054-7762073 MS.gene09810:CDS 50.0%
TGCGCAAAGTATGACACTCC+CGG - chr7.1:7761088-7761107 None:intergenic 50.0%
TGTGCCATCCAGAACTGCAT+TGG - chr7.1:7762065-7762084 None:intergenic 50.0%
! AGACTCTCCAATGGGCTCAT+GGG - chr7.1:7762232-7762251 None:intergenic 50.0%
! CAATAACGGGGATTCTGTGG+TGG + chr7.1:7762564-7762583 MS.gene09810:CDS 50.0%
! CTGCAATAACGGGGATTCTG+TGG + chr7.1:7762561-7762580 MS.gene09810:CDS 50.0%
! GTCGAGAAGCTTTTACGAGC+AGG + chr7.1:7760162-7760181 MS.gene09810:CDS 50.0%
! TAGACTCTCCAATGGGCTCA+TGG - chr7.1:7762233-7762252 None:intergenic 50.0%
! TCAGTAGCTTCAGCTCTGGT+TGG - chr7.1:7762037-7762056 None:intergenic 50.0%
! TGATTGGTCCTGCAGTGATG+AGG + chr7.1:7762405-7762424 MS.gene09810:CDS 50.0%
! TGGTGCTAGATGCGAGTTCA+AGG + chr7.1:7760809-7760828 MS.gene09810:intron 50.0%
ACCAGTACCCATGAGCCCAT+TGG + chr7.1:7762222-7762241 MS.gene09810:CDS 55.0%
CGCCGTCATGCTCGATACTA+AGG + chr7.1:7760287-7760306 MS.gene09810:CDS 55.0%
CTTAGCGGTGAAACTGCTGC+TGG + chr7.1:7762097-7762116 MS.gene09810:CDS 55.0%
GCGCAAAGTATGACACTCCC+GGG - chr7.1:7761087-7761106 None:intergenic 55.0%
TTGGCTGAGGATGTGAAGCC+CGG + chr7.1:7761066-7761085 MS.gene09810:CDS 55.0%
! TCCAATGGGCTCATGGGTAC+TGG - chr7.1:7762226-7762245 None:intergenic 55.0%
! TTGATTCCAGTGCTGAGCGC+AGG + chr7.1:7762460-7762479 MS.gene09810:CDS 55.0%
!! GTCGCCAATGCAGTTCTGGA+TGG + chr7.1:7762058-7762077 MS.gene09810:CDS 55.0%
AGACCTAGATGCGGGTCCCA+GGG - chr7.1:7760133-7760152 None:intergenic 60.0%
ATGGTGGCACGTGGTGACCT+TGG + chr7.1:7761887-7761906 MS.gene09810:CDS 60.0%
CAGGGGCCTGAGATTCGTAC+TGG + chr7.1:7760931-7760950 MS.gene09810:intron 60.0%
GGCACGTGGTGACCTTGGAA+TGG + chr7.1:7761892-7761911 MS.gene09810:CDS 60.0%
TAGACCTAGATGCGGGTCCC+AGG - chr7.1:7760134-7760153 None:intergenic 60.0%
TGGCTGAGGATGTGAAGCCC+GGG + chr7.1:7761067-7761086 MS.gene09810:CDS 60.0%
! AGCTTCAGCTCTGGTTGGCC+TGG - chr7.1:7762032-7762051 None:intergenic 60.0%
!! GCTTCAGCTCTGGTTGGCCT+GGG - chr7.1:7762031-7762050 None:intergenic 60.0%
GCAGAACCTGCGCTCAGCAC+TGG - chr7.1:7762469-7762488 None:intergenic 65.0%
! GTGGTGGCTCTGCATCGCGT+GGG + chr7.1:7762580-7762599 MS.gene09810:CDS 65.0%
! TGTGGTGGCTCTGCATCGCG+TGG + chr7.1:7762579-7762598 MS.gene09810:CDS 65.0%
GCACCCTGGGACCCGCATCT+AGG + chr7.1:7760127-7760146 MS.gene09810:CDS 70.0%
GGCAGGGGCCTCATCACTGC+AGG - chr7.1:7762416-7762435 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 7760081 7762639 7760081 ID=MS.gene09810
chr7.1 mRNA 7760081 7762639 7760081 ID=MS.gene09810.t1;Parent=MS.gene09810
chr7.1 exon 7760081 7760308 7760081 ID=MS.gene09810.t1.exon1;Parent=MS.gene09810.t1
chr7.1 CDS 7760081 7760308 7760081 ID=cds.MS.gene09810.t1;Parent=MS.gene09810.t1
chr7.1 exon 7760934 7761395 7760934 ID=MS.gene09810.t1.exon2;Parent=MS.gene09810.t1
chr7.1 CDS 7760934 7761395 7760934 ID=cds.MS.gene09810.t1;Parent=MS.gene09810.t1
chr7.1 exon 7761827 7762639 7761827 ID=MS.gene09810.t1.exon3;Parent=MS.gene09810.t1
chr7.1 CDS 7761827 7762639 7761827 ID=cds.MS.gene09810.t1;Parent=MS.gene09810.t1
Gene Sequence

>MS.gene09810

ATGTCGACGATGGTAGCAGAGAAGAAACCGAAAACTAAGATCGTTTGCACCCTGGGACCCGCATCTAGGTCTATTCCCATGGTCGAGAAGCTTTTACGAGCAGGTATGAACGTTGCCAGATTCAACTTCTCTCATGGTTCTCATGAGTATCATCAGGAAACTCTTGATAATCTTAGAGCTGCCATGGAGAATACTGGTATTCTTTGCGCCGTCATGCTCGATACTAAGGTATAAAACCCTTTATTTATTTATTTTATTTATTATGCATCTTAAGTTTTCTTTGTTAATGCTTTTGATTTGAATTGATAGTGTATGTATGTAATTTGTGTTTGTTATTGATGTGTGAGATGTATCAAGTTGATTTTGACCTTATATAATCTTATGTCTACTATGGATCATAAGAATCTGTTATTTGTCGTAAAGGCTGTTTGGATTGACTTATTTGACCTTATTCACTACCATAAACACTTCTGAGACTGTTTGAGAGAAGTTGTGAAAATAATTTGTGATATGTTCATGAGTTAGTTAAACTTTATTTTATCTTTTGTTATAGAAATAACTTATAAATGAGCGCTTGTCATGATAGGTGATTATGCTATAAACTGCAAATTAAGTTGTTTATCCAAACAGACTTTCTTTAGTTCTTTTAATGTTTTCATAAGTCAAGAACATGAATGGCTTAATCATTTAGGCATATTACATTTCCTATCTTTCACTGCATGCTGAATTGGTGCTAGATGCGAGTTCAAGGCATTATTATTCATGAACTTAATAAAGTGAAACCAGCATTTTCAAGTTCCTTCATTTCATATCTTTCATTTTATGCACCTACTTACATTGCAAATTGCTGCAGGGGCCTGAGATTCGTACTGGATTTCTCAAGGATGGCAAACCTATCCAACTGAAACAAGGTAATGAAATAACTATTTCAACCGACTATAGCCTAAAGGGTGATGAGAATACGATCTGCATGAGCTACAAAAAGTTGGCTGAGGATGTGAAGCCCGGGAGTGTCATACTTTGCGCAGATGGAACCATATCATTTACAGTTTTATCATGTGACAAAGAATTGGGTTTGGTTCGAGTCCGCTGTGAGAATTCTGCTGTTCTAGGCGAGAGAAAGAATGTTAATCTGCCTGGAGTTGTAGTGGATCTTCGCACTTTGACTGAGAAAGACAGGGAAGATATTATGGTTTGGGGTGTTCCCAATAAAATTGACATGATTGCGCTATCTTTTGTTCGAAAAGGTTCTGATCTGGTGCAAGTTCGGAAACTGCTAGGACACCATGCTAAGAACATTCTTCTCATGTCAAAGGTATGCTATATTATGAATTTCTGATTTTTTTTTTCCATGGAAAATAGGTGATTTTTTAGCTTGTTTAACAATGTGTCAAGAGTTCTAATCAGACATGATATCATAGAGATGTTTGCTGCATTCCTATTAATGTGTGTTATATTGGACATCATCTAACAAAATTTGAGATGCTCTTCAAAGAAAATATGTTGAGTTGCTACTGATTTTTTCTAGGACAAAATTTAGGCACATTTCTTTAGGTGTTTTTTGTAGGCAAACTTTGAAAAATTATGGATTCGAGGAAATCATAGATAGTTTAGTTAAGAACTATACAAAAAACACCTAAGGAAATGCACTAAGTTTTTTCCTTTTTTTCTATCGCTTGCATGTGTTATGTTCAATTACTTATTTCTAGTTGCTTTTCCTCTGCAACTTGCAAATGTATGTGACAGGTTGAAAACCAAGAAGGGGTTGCAAACTTTGATGATATCCTTGCAAATTCAGATGCATTTATGGTGGCACGTGGTGACCTTGGAATGGAAATTCCAATTGAGAAAATATTTCTAGCACAGAAAGTGATGATTTATAAGTGCAATATCCAAGGAAAGCCTGTTGTTACTGCAACCCAGATGTTGGAGTCAATGATCAAATCTCCCAGGCCAACCAGAGCTGAAGCTACTGATGTCGCCAATGCAGTTCTGGATGGCACAGACTGTGTCATGCTTAGCGGTGAAACTGCTGCTGGAGCTTATCCAGAACTTGCTGTTCGAACTATGGCTAAAATTTGTGTTGAAGCTGAGAGTACCATTAACTATGGAGATGTATTTAAAAGGATAATGGAGCACTCACCAGTACCCATGAGCCCATTGGAGAGTCTAGCTTCTTCTGCAGTTAAAATGGCCAACTCAGCTAAAGCAGCACTTATATTGGTTTTAACTAGAGGAGGGAGTACTGCAAAATTAGTGGCTAAATACAGGGCAGGCATGCCAATTCTTTCTGTTGTCGTTCCTGAGATTAAGACTGACACCTTTGATTGGTCCTGCAGTGATGAGGCCCCTGCCAGACATAGCTTGATATTCCGAGGATTGATTCCAGTGCTGAGCGCAGGTTCTGCTAGAGCTTCTCACACAGAAACAACAGAAGAGGCACTAGACTTTGCCATTCAGTATGCCAAAACAAAGGGTCTCTGCAATAACGGGGATTCTGTGGTGGCTCTGCATCGCGTGGGTGTCGCATCAGTCATCAAAATCTTGACTGTGAAATGA

Protein sequence

>MS.gene09810.t1

MSTMVAEKKPKTKIVCTLGPASRSIPMVEKLLRAGMNVARFNFSHGSHEYHQETLDNLRAAMENTGILCAVMLDTKGPEIRTGFLKDGKPIQLKQGNEITISTDYSLKGDENTICMSYKKLAEDVKPGSVILCADGTISFTVLSCDKELGLVRVRCENSAVLGERKNVNLPGVVVDLRTLTEKDREDIMVWGVPNKIDMIALSFVRKGSDLVQVRKLLGHHAKNILLMSKVENQEGVANFDDILANSDAFMVARGDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETAAGAYPELAVRTMAKICVEAESTINYGDVFKRIMEHSPVPMSPLESLASSAVKMANSAKAALILVLTRGGSTAKLVAKYRAGMPILSVVVPEIKTDTFDWSCSDEAPARHSLIFRGLIPVLSAGSARASHTETTEEALDFAIQYAKTKGLCNNGDSVVALHRVGVASVIKILTVK