Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006867.t1 | RHN62058.1 | 99.2 | 500 | 4 | 0 | 1 | 500 | 1 | 500 | 9.90E-279 | 968.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006867.t1 | Q42954 | 87.6 | 493 | 61 | 0 | 8 | 500 | 16 | 508 | 2.0e-248 | 859.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006867.t1 | A0A396IBA8 | 99.2 | 500 | 4 | 0 | 1 | 500 | 1 | 500 | 7.1e-279 | 968.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006867.t1 | MTR_7g100760 | 93.600 | 500 | 32 | 0 | 1 | 500 | 1 | 500 | 0.0 | 969 |
| MS.gene006867.t1 | MTR_4g083330 | 93.400 | 500 | 6 | 2 | 1 | 500 | 1 | 473 | 0.0 | 943 |
| MS.gene006867.t1 | MTR_4g083340 | 89.336 | 497 | 53 | 0 | 4 | 500 | 1 | 497 | 0.0 | 926 |
| MS.gene006867.t1 | MTR_6g004020 | 78.819 | 491 | 104 | 0 | 10 | 500 | 20 | 510 | 0.0 | 818 |
| MS.gene006867.t1 | MTR_7g103420 | 42.485 | 499 | 275 | 7 | 12 | 500 | 30 | 526 | 1.67e-128 | 384 |
| MS.gene006867.t1 | MTR_1g091040 | 41.748 | 515 | 282 | 9 | 1 | 500 | 14 | 525 | 3.35e-127 | 380 |
| MS.gene006867.t1 | MTR_7g103420 | 41.634 | 514 | 273 | 9 | 12 | 500 | 30 | 541 | 1.01e-125 | 377 |
| MS.gene006867.t1 | MTR_1g061630 | 42.116 | 501 | 276 | 7 | 12 | 500 | 30 | 528 | 3.88e-124 | 373 |
| MS.gene006867.t1 | MTR_1g061630 | 41.517 | 501 | 263 | 7 | 12 | 500 | 30 | 512 | 7.78e-122 | 367 |
| MS.gene006867.t1 | MTR_7g103420 | 40.091 | 439 | 251 | 7 | 72 | 500 | 1 | 437 | 7.17e-100 | 307 |
| MS.gene006867.t1 | MTR_1g091040 | 41.962 | 367 | 207 | 5 | 138 | 500 | 28 | 392 | 1.85e-91 | 284 |
| MS.gene006867.t1 | MTR_5g014140 | 38.780 | 410 | 237 | 8 | 6 | 412 | 73 | 471 | 6.95e-89 | 283 |
| MS.gene006867.t1 | MTR_6g034195 | 35.787 | 489 | 265 | 12 | 9 | 486 | 104 | 554 | 5.99e-84 | 270 |
| MS.gene006867.t1 | MTR_1g099360 | 34.969 | 489 | 269 | 12 | 9 | 486 | 102 | 552 | 9.45e-83 | 267 |
| MS.gene006867.t1 | MTR_5g014140 | 41.617 | 334 | 181 | 7 | 6 | 333 | 73 | 398 | 7.87e-79 | 253 |
| MS.gene006867.t1 | MTR_1g076540 | 31.600 | 500 | 285 | 11 | 11 | 485 | 90 | 557 | 7.38e-71 | 236 |
| MS.gene006867.t1 | MTR_1g105965 | 32.383 | 491 | 294 | 11 | 11 | 488 | 91 | 556 | 1.32e-68 | 230 |
| MS.gene006867.t1 | MTR_1g105965 | 34.615 | 312 | 190 | 7 | 11 | 313 | 91 | 397 | 6.11e-51 | 179 |
| MS.gene006867.t1 | MTR_1g105965 | 30.093 | 216 | 138 | 6 | 11 | 218 | 91 | 301 | 1.19e-21 | 95.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006867.t1 | AT5G56350 | 89.271 | 494 | 53 | 0 | 7 | 500 | 5 | 498 | 0.0 | 908 |
| MS.gene006867.t1 | AT4G26390 | 83.603 | 494 | 81 | 0 | 7 | 500 | 4 | 497 | 0.0 | 867 |
| MS.gene006867.t1 | AT5G08570 | 79.022 | 491 | 103 | 0 | 10 | 500 | 20 | 510 | 0.0 | 821 |
| MS.gene006867.t1 | AT5G08570 | 79.022 | 491 | 103 | 0 | 10 | 500 | 20 | 510 | 0.0 | 821 |
| MS.gene006867.t1 | AT5G08570 | 79.022 | 491 | 103 | 0 | 10 | 500 | 20 | 510 | 0.0 | 821 |
| MS.gene006867.t1 | AT5G63680 | 78.702 | 493 | 105 | 0 | 8 | 500 | 18 | 510 | 0.0 | 818 |
| MS.gene006867.t1 | AT5G63680 | 78.702 | 493 | 105 | 0 | 8 | 500 | 18 | 510 | 0.0 | 818 |
| MS.gene006867.t1 | AT5G63680 | 78.702 | 493 | 105 | 0 | 8 | 500 | 18 | 510 | 0.0 | 818 |
| MS.gene006867.t1 | AT3G04050 | 73.790 | 496 | 126 | 3 | 9 | 500 | 15 | 510 | 0.0 | 758 |
| MS.gene006867.t1 | AT3G25960 | 72.470 | 494 | 123 | 4 | 9 | 500 | 15 | 497 | 0.0 | 728 |
| MS.gene006867.t1 | AT3G55650 | 71.169 | 496 | 139 | 3 | 9 | 500 | 15 | 510 | 0.0 | 726 |
| MS.gene006867.t1 | AT3G55810 | 67.944 | 496 | 137 | 4 | 9 | 500 | 15 | 492 | 0.0 | 673 |
| MS.gene006867.t1 | AT2G36580 | 43.487 | 499 | 270 | 7 | 12 | 500 | 30 | 526 | 2.93e-130 | 389 |
| MS.gene006867.t1 | AT3G52990 | 43.287 | 499 | 271 | 7 | 12 | 500 | 30 | 526 | 2.72e-129 | 386 |
| MS.gene006867.t1 | AT3G52990 | 42.526 | 475 | 261 | 7 | 36 | 500 | 1 | 473 | 3.63e-120 | 361 |
| MS.gene006867.t1 | AT5G52920 | 36.179 | 492 | 272 | 13 | 11 | 495 | 111 | 567 | 1.38e-84 | 272 |
| MS.gene006867.t1 | AT1G32440 | 39.320 | 412 | 229 | 10 | 7 | 412 | 96 | 492 | 4.09e-81 | 263 |
| MS.gene006867.t1 | AT3G22960 | 31.717 | 495 | 289 | 12 | 11 | 485 | 118 | 583 | 3.16e-70 | 235 |
| MS.gene006867.t1 | AT3G49160 | 31.618 | 272 | 159 | 9 | 73 | 322 | 325 | 591 | 1.53e-21 | 98.6 |
| MS.gene006867.t1 | AT3G49160 | 31.618 | 272 | 159 | 9 | 73 | 322 | 413 | 679 | 1.73e-21 | 98.6 |
Find 123 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAAACTCTGATGCATTTA+TGG | 0.128456 | 4.4:+29650558 | MS.gene006867:CDS |
| CAAAGTTTGCAACCCCTTCT+TGG | 0.251729 | 4.4:-29650525 | None:intergenic |
| CGTGCAAACGATCTTAGTTT+TGG | 0.261618 | 4.4:-29648700 | None:intergenic |
| AGGAGGGACTACTGCAAAAT+TGG | 0.314986 | 4.4:+29651005 | MS.gene006867:CDS |
| GTACAAGTTCGAAAACTTCT+AGG | 0.320879 | 4.4:+29650182 | MS.gene006867:CDS |
| TGTGAGAACTCTGCTGTTCT+AGG | 0.329692 | 4.4:+29650014 | MS.gene006867:CDS |
| GCAGAAGCAGCACTTAATAT+TGG | 0.330688 | 4.4:-29651156 | None:intergenic |
| TGATGTTGCGAATGCAGTTC+TGG | 0.344149 | 4.4:+29650744 | MS.gene006867:CDS |
| GAAAGGGACTCTGCGTTAAC+GGG | 0.361244 | 4.4:+29651241 | MS.gene006867:CDS |
| CTTATCGTGTGACAAAGAAT+TGG | 0.361638 | 4.4:+29649974 | MS.gene006867:CDS |
| TTGTATTCTCATCACCCTTT+AGG | 0.370256 | 4.4:-29649866 | None:intergenic |
| CGATAAGACTGTAAATGATA+TGG | 0.371207 | 4.4:-29649958 | None:intergenic |
| AGCTTCAGCTCTGGTTGGCC+GGG | 0.390347 | 4.4:-29650719 | None:intergenic |
| TAGCTTCAGCTCTGGTTGGC+CGG | 0.391145 | 4.4:-29650720 | None:intergenic |
| CAAGGAAGATATCATGGCTT+GGG | 0.397205 | 4.4:+29650100 | MS.gene006867:CDS |
| CCTTTCCCTTGGCACATTGA+AGG | 0.403085 | 4.4:-29651224 | None:intergenic |
| GCTGAGAGCACCATTGACTA+TGG | 0.403578 | 4.4:+29650859 | MS.gene006867:CDS |
| GGAAAGGGACTCTGCGTTAA+CGG | 0.404260 | 4.4:+29651240 | MS.gene006867:CDS |
| CGCCGTCATGCTCGATACTA+AGG | 0.406356 | 4.4:+29648878 | MS.gene006867:CDS |
| TCAACTGACTATAGCCTAAA+GGG | 0.420476 | 4.4:+29649852 | MS.gene006867:CDS |
| CATGACGGCGCAGAGAATTC+CGG | 0.420747 | 4.4:-29648865 | None:intergenic |
| TTGTTTCAGTTGGATAGGTT+TGG | 0.435015 | 4.4:-29649811 | None:intergenic |
| TGCTAGAGCAGCTCTCATAT+TGG | 0.437951 | 4.4:+29650972 | MS.gene006867:CDS |
| AGATGTATTCAAAAGGATAA+TGG | 0.438677 | 4.4:+29650882 | MS.gene006867:CDS |
| GGAACGACAACAGAAAGAAT+TGG | 0.441249 | 4.4:-29651051 | None:intergenic |
| GCACGCTGGGACCCGCATCT+AGG | 0.445382 | 4.4:+29648718 | MS.gene006867:CDS |
| TTATCGTGTGACAAAGAATT+GGG | 0.446712 | 4.4:+29649975 | MS.gene006867:CDS |
| ACAGAAAGAATTGGCGTGCC+TGG | 0.449963 | 4.4:-29651042 | None:intergenic |
| GCGCTTTCATTTGTTCGAAA+AGG | 0.450686 | 4.4:+29650149 | MS.gene006867:CDS |
| CAAAATTGGTGGCTAAATAC+AGG | 0.450918 | 4.4:+29651019 | MS.gene006867:CDS |
| TTTCATTACCTTGTTTCAGT+TGG | 0.451778 | 4.4:-29649821 | None:intergenic |
| TTACCTTGTTTCAGTTGGAT+AGG | 0.452533 | 4.4:-29649816 | None:intergenic |
| TGTTCGAAAAGGTTCTGATC+TGG | 0.452582 | 4.4:+29650160 | MS.gene006867:CDS |
| TCCAATGGGCTCATGGGTAC+TGG | 0.457116 | 4.4:-29650913 | None:intergenic |
| TAACGACTGATACCTTTGAT+TGG | 0.457143 | 4.4:+29651079 | MS.gene006867:CDS |
| AGAAATCCAGTTCGAATCTC+AGG | 0.458723 | 4.4:-29649780 | None:intergenic |
| ACTAAGATCGTTTGCACGCT+GGG | 0.459837 | 4.4:+29648705 | MS.gene006867:CDS |
| GAGAGCTGCTCTAGCAGAGT+TGG | 0.462449 | 4.4:-29650965 | None:intergenic |
| CTTTCCCTTGGCACATTGAA+GGG | 0.463400 | 4.4:-29651223 | None:intergenic |
| ATTGTACGAACAGCAAGTTC+TGG | 0.463793 | 4.4:-29650817 | None:intergenic |
| GAATACATCTCCATAGTCAA+TGG | 0.466000 | 4.4:-29650869 | None:intergenic |
| AACGCAGAGTCCCTTTCCCT+TGG | 0.468309 | 4.4:-29651235 | None:intergenic |
| CGCAAAAGCTTCTCGACCAT+GGG | 0.471680 | 4.4:-29648747 | None:intergenic |
| TAGACTCTCCAATGGGCTCA+TGG | 0.478114 | 4.4:-29650920 | None:intergenic |
| TTGGCTCATGATGTGAAGCC+TGG | 0.480964 | 4.4:+29649909 | MS.gene006867:CDS |
| CAATTGGAATTTCCATTCCA+AGG | 0.480988 | 4.4:-29650594 | None:intergenic |
| GCTAGATTCAACTTCTCTCA+TGG | 0.485672 | 4.4:+29648786 | MS.gene006867:CDS |
| GTGTGACAAAGAATTGGGTT+TGG | 0.488491 | 4.4:+29649980 | MS.gene006867:CDS |
| GTGCAATATCCAAGGAAAAC+CGG | 0.489545 | 4.4:+29650654 | MS.gene006867:CDS |
| AGAAAGAATGTTAATCTGCC+TGG | 0.492316 | 4.4:+29650041 | MS.gene006867:CDS |
| AATATCAAGCTATGTCTAGC+AGG | 0.493341 | 4.4:-29651120 | None:intergenic |
| TAGGGGCCTGAGATTCGAAC+TGG | 0.499972 | 4.4:+29649774 | MS.gene006867:intron |
| CTTCAATGTGCCAAGGGAAA+GGG | 0.500302 | 4.4:+29651225 | MS.gene006867:CDS |
| TTCAACTGACTATAGCCTAA+AGG | 0.500418 | 4.4:+29649851 | MS.gene006867:CDS |
| CGTTAACGGGGATTCTGTTG+TGG | 0.503390 | 4.4:+29651254 | MS.gene006867:CDS |
| GCTTCAGCTCTGGTTGGCCG+GGG | 0.507929 | 4.4:-29650718 | None:intergenic |
| CGTTACTGCGACTCAGATGT+TGG | 0.507988 | 4.4:+29650678 | MS.gene006867:CDS |
| ATCTGAGTCGCAGTAACGAC+CGG | 0.509493 | 4.4:-29650673 | None:intergenic |
| GAAAGACAAGGAAGATATCA+TGG | 0.513280 | 4.4:+29650094 | MS.gene006867:CDS |
| TGGTTCTCATGAGTATCATC+AGG | 0.514740 | 4.4:+29648806 | MS.gene006867:CDS |
| CCTTCAATGTGCCAAGGGAA+AGG | 0.523286 | 4.4:+29651224 | MS.gene006867:CDS |
| ACAGACTGTGTCATGCTTAG+TGG | 0.525623 | 4.4:+29650772 | MS.gene006867:CDS |
| ACAAGGAAGATATCATGGCT+TGG | 0.526189 | 4.4:+29650099 | MS.gene006867:CDS |
| AAGGTATCAGTCGTTAGCTC+AGG | 0.530961 | 4.4:-29651072 | None:intergenic |
| CGCATCTAGGTCTATTCCCA+TGG | 0.531643 | 4.4:+29648731 | MS.gene006867:CDS |
| TGATAATCTTAGAGCTGCCA+TGG | 0.531806 | 4.4:+29648836 | MS.gene006867:CDS |
| AGTGTCATACTCTGCGCAGA+TGG | 0.532331 | 4.4:+29649933 | MS.gene006867:CDS |
| ACTATGGAGATGTATTCAAA+AGG | 0.538144 | 4.4:+29650875 | MS.gene006867:CDS |
| GGAAGATCCACTACGACTCC+AGG | 0.538876 | 4.4:-29650059 | None:intergenic |
| CTTGTCTTTCTCAGTCAAAG+TGG | 0.540820 | 4.4:-29650081 | None:intergenic |
| AACTAAGATCGTTTGCACGC+TGG | 0.542989 | 4.4:+29648704 | MS.gene006867:CDS |
| TCGCAAAAGCTTCTCGACCA+TGG | 0.546576 | 4.4:-29648748 | None:intergenic |
| CTTAGTGGTGAAACTGCTGC+TGG | 0.547208 | 4.4:+29650787 | MS.gene006867:CDS |
| AACATCAGTAGCTTCAGCTC+TGG | 0.547477 | 4.4:-29650728 | None:intergenic |
| GGCAGGTTGAAAACCAAGAA+GGG | 0.548016 | 4.4:+29650512 | MS.gene006867:intron |
| GAACATTCTTCTCATGTCAA+AGG | 0.556045 | 4.4:+29650217 | MS.gene006867:CDS |
| AGACTCTCCAATGGGCTCAT+GGG | 0.558290 | 4.4:-29650919 | None:intergenic |
| AGGGACTACTGCAAAATTGG+TGG | 0.560616 | 4.4:+29651008 | MS.gene006867:CDS |
| CTCATATTGGTTCTAACTAG+AGG | 0.560702 | 4.4:+29650985 | MS.gene006867:CDS |
| TTAATATTGGAATCAATCCT+CGG | 0.562918 | 4.4:-29651143 | None:intergenic |
| AGAGCTGCCATGGAGAATAC+CGG | 0.568658 | 4.4:+29648846 | MS.gene006867:CDS |
| ACCAGTACCCATGAGCCCAT+TGG | 0.569139 | 4.4:+29650912 | MS.gene006867:CDS |
| TTGTCTTTCTCAGTCAAAGT+GGG | 0.570627 | 4.4:-29650080 | None:intergenic |
| TTTAATGGGAGATCATTTCA+CGG | 0.575483 | 4.4:-29651319 | None:intergenic |
| GGCACGTGGTGACCTTGGAA+TGG | 0.579482 | 4.4:+29650582 | MS.gene006867:CDS |
| AAGAAGCTAGACTCTCCAAT+GGG | 0.579536 | 4.4:-29650927 | None:intergenic |
| TTGGTGGCTAAATACAGGCC+AGG | 0.581932 | 4.4:+29651024 | MS.gene006867:CDS |
| TGGCAGGTTGAAAACCAAGA+AGG | 0.582341 | 4.4:+29650511 | MS.gene006867:intron |
| ATATCAAGCTATGTCTAGCA+GGG | 0.582962 | 4.4:-29651119 | None:intergenic |
| TCAGTAGCTTCAGCTCTGGT+TGG | 0.584103 | 4.4:-29650724 | None:intergenic |
| TGTTGTGGTTCTGCATCGCG+TGG | 0.586595 | 4.4:+29651269 | MS.gene006867:CDS |
| GATTCGAACTGGATTTCTCA+AGG | 0.588567 | 4.4:+29649785 | MS.gene006867:CDS |
| ATTTGCCCTTCAATGTGCCA+AGG | 0.591498 | 4.4:+29651218 | MS.gene006867:CDS |
| TAAATGCATCAGAGTTTGCA+AGG | 0.592927 | 4.4:-29650555 | None:intergenic |
| ATGGTGGCACGTGGTGACCT+TGG | 0.597261 | 4.4:+29650577 | MS.gene006867:CDS |
| ATTTATAAGTGCAATATCCA+AGG | 0.598187 | 4.4:+29650646 | MS.gene006867:CDS |
| AGAACTTGCTGTTCGTACAA+TGG | 0.602563 | 4.4:+29650819 | MS.gene006867:CDS |
| AGACATAGCTTGATATTCCG+AGG | 0.602907 | 4.4:+29651126 | MS.gene006867:CDS |
| GCGCAGAGTATGACACTCCC+AGG | 0.606193 | 4.4:-29649927 | None:intergenic |
| ATATTGGTTCTAACTAGAGG+AGG | 0.607238 | 4.4:+29650988 | MS.gene006867:CDS |
| CACTTTGACTGAGAAAGACA+AGG | 0.607462 | 4.4:+29650082 | MS.gene006867:CDS |
| TGAGAAGAATGTTCTTAGCA+TGG | 0.609210 | 4.4:-29650208 | None:intergenic |
| TTTGCCCTTCAATGTGCCAA+GGG | 0.609763 | 4.4:+29651219 | MS.gene006867:CDS |
| GTTGCGAATGCAGTTCTGGA+TGG | 0.610844 | 4.4:+29650748 | MS.gene006867:CDS |
| GAGAATTCCGGTATTCTCCA+TGG | 0.611587 | 4.4:-29648853 | None:intergenic |
| ATCACTGCATGACCAATCAA+AGG | 0.619997 | 4.4:-29651091 | None:intergenic |
| GAAGAAGCTAGACTCTCCAA+TGG | 0.622268 | 4.4:-29650928 | None:intergenic |
| TGGCTCATGATGTGAAGCCT+GGG | 0.622471 | 4.4:+29649910 | MS.gene006867:CDS |
| TAATCTGCCTGGAGTCGTAG+TGG | 0.623976 | 4.4:+29650052 | MS.gene006867:CDS |
| ATGGGAATAGACCTAGATGC+GGG | 0.628393 | 4.4:-29648729 | None:intergenic |
| TATTGGTTCTAACTAGAGGA+GGG | 0.629589 | 4.4:+29650989 | MS.gene006867:CDS |
| AAACCTATCCAACTGAAACA+AGG | 0.639584 | 4.4:+29649813 | MS.gene006867:CDS |
| AAGGAAGATATCATGGCTTG+GGG | 0.639801 | 4.4:+29650101 | MS.gene006867:CDS |
| AGTCAATGATCAAATCTCCC+CGG | 0.646746 | 4.4:+29650701 | MS.gene006867:CDS |
| AAAGGGACTCTGCGTTAACG+GGG | 0.647503 | 4.4:+29651242 | MS.gene006867:CDS |
| GTTGTGGTTCTGCATCGCGT+GGG | 0.653541 | 4.4:+29651270 | MS.gene006867:CDS |
| GCAGGTTGAAAACCAAGAAG+GGG | 0.675723 | 4.4:+29650513 | MS.gene006867:intron |
| TACCTTAGTATCGAGCATGA+CGG | 0.683613 | 4.4:-29648880 | None:intergenic |
| CATGGGAATAGACCTAGATG+CGG | 0.689751 | 4.4:-29648730 | None:intergenic |
| AAACTCTGATGCATTTATGG+TGG | 0.705208 | 4.4:+29650561 | MS.gene006867:CDS |
| TATCAAGCTATGTCTAGCAG+GGG | 0.708675 | 4.4:-29651118 | None:intergenic |
| GATGCATTTATGGTGGCACG+TGG | 0.742236 | 4.4:+29650568 | MS.gene006867:CDS |
| GAACAGCAGAGTTCTCACAG+CGG | 0.862341 | 4.4:-29650010 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGATACATAAAATAAAAAA+AGG | - | chr4.4:29648911-29648930 | None:intergenic | 10.0% |
| !! | TACTTGATTCTTAATATTTA+TGG | + | chr4.4:29649600-29649619 | MS.gene006867:intron | 15.0% |
| !!! | CTGAAAATAATTTTTGTATT+TGG | + | chr4.4:29649279-29649298 | MS.gene006867:intron | 15.0% |
| !! | AATTCTTATCCATACATATA+AGG | - | chr4.4:29649042-29649061 | None:intergenic | 20.0% |
| !! | ATTAAGAATCAAGTAAAAAC+CGG | - | chr4.4:29649595-29649614 | None:intergenic | 20.0% |
| !! | TAAAAGAACTATAGTCTATT+TGG | - | chr4.4:29649532-29649551 | None:intergenic | 20.0% |
| ! | AAGAGATAGAAAAAATCAGT+AGG | - | chr4.4:29650429-29650448 | None:intergenic | 25.0% |
| ! | AGATGTATTCAAAAGGATAA+TGG | + | chr4.4:29650882-29650901 | MS.gene006867:CDS | 25.0% |
| ! | ATTTATAAGTGCAATATCCA+AGG | + | chr4.4:29650646-29650665 | MS.gene006867:CDS | 25.0% |
| ! | TGTTAGATTAGGTTATGTTT+GGG | + | chr4.4:29649116-29649135 | MS.gene006867:intron | 25.0% |
| ! | TTAATATTGGAATCAATCCT+CGG | - | chr4.4:29651146-29651165 | None:intergenic | 25.0% |
| ! | TTACAATACTCACCAAAATA+AGG | - | chr4.4:29649633-29649652 | None:intergenic | 25.0% |
| !! | GCAATCATGTCAATTTTATT+GGG | - | chr4.4:29650131-29650150 | None:intergenic | 25.0% |
| !! | TTTTATAAGATGTCTTAGAG+AGG | + | chr4.4:29649243-29649262 | MS.gene006867:intron | 25.0% |
| !!! | TATGGTTTAGAACCTTATTT+TGG | + | chr4.4:29649618-29649637 | MS.gene006867:intron | 25.0% |
| !!! | TATTAAGAGAGTTTTAGTTG+CGG | - | chr4.4:29649678-29649697 | None:intergenic | 25.0% |
| !!! | TGATTTTGACCTTATATGTA+TGG | + | chr4.4:29649030-29649049 | MS.gene006867:intron | 25.0% |
| ACAGTTCAAACATGTATTGA+CGG | - | chr4.4:29649099-29649118 | None:intergenic | 30.0% | |
| ACTATGGAGATGTATTCAAA+AGG | + | chr4.4:29650875-29650894 | MS.gene006867:CDS | 30.0% | |
| CATGTTTGAACTGTTAGATT+AGG | + | chr4.4:29649105-29649124 | MS.gene006867:intron | 30.0% | |
| CGATAAGACTGTAAATGATA+TGG | - | chr4.4:29649961-29649980 | None:intergenic | 30.0% | |
| CGGTAAAAGTCACTATTAAT+CGG | - | chr4.4:29649079-29649098 | None:intergenic | 30.0% | |
| CTGTTAGATTAGGTTATGTT+TGG | + | chr4.4:29649115-29649134 | MS.gene006867:intron | 30.0% | |
| TGTTTCATGCAAGTTATTAG+CGG | + | chr4.4:29649219-29649238 | MS.gene006867:intron | 30.0% | |
| TTATCGTGTGACAAAGAATT+GGG | + | chr4.4:29649975-29649994 | MS.gene006867:CDS | 30.0% | |
| ! | CGCAATCATGTCAATTTTAT+TGG | - | chr4.4:29650132-29650151 | None:intergenic | 30.0% |
| ! | GCGAGAAATATTTTCTCAAT+TGG | - | chr4.4:29650613-29650632 | None:intergenic | 30.0% |
| ! | TTTCATTACCTTGTTTCAGT+TGG | - | chr4.4:29649824-29649843 | None:intergenic | 30.0% |
| !! | ATAAAAGCATCTTCAATGTC+CGG | + | chr4.4:29649573-29649592 | MS.gene006867:intron | 30.0% |
| !! | CAAGATTTTGATGATTGATG+CGG | - | chr4.4:29651298-29651317 | None:intergenic | 30.0% |
| AAACCTATCCAACTGAAACA+AGG | + | chr4.4:29649813-29649832 | MS.gene006867:CDS | 35.0% | |
| AAACTCTGATGCATTTATGG+TGG | + | chr4.4:29650561-29650580 | MS.gene006867:CDS | 35.0% | |
| AAGATGTCTTAGAGAGGTTA+TGG | + | chr4.4:29649249-29649268 | MS.gene006867:intron | 35.0% | |
| AATATCAAGCTATGTCTAGC+AGG | - | chr4.4:29651123-29651142 | None:intergenic | 35.0% | |
| AGAAAGAATGTTAATCTGCC+TGG | + | chr4.4:29650041-29650060 | MS.gene006867:CDS | 35.0% | |
| ATATCAAGCTATGTCTAGCA+GGG | - | chr4.4:29651122-29651141 | None:intergenic | 35.0% | |
| ATGAAGCAACTTGAAAATGC+TGG | - | chr4.4:29649709-29649728 | None:intergenic | 35.0% | |
| CAATTGGAATTTCCATTCCA+AGG | - | chr4.4:29650597-29650616 | None:intergenic | 35.0% | |
| CTTATCGTGTGACAAAGAAT+TGG | + | chr4.4:29649974-29649993 | MS.gene006867:CDS | 35.0% | |
| GAAAGACAAGGAAGATATCA+TGG | + | chr4.4:29650094-29650113 | MS.gene006867:CDS | 35.0% | |
| GAACATTCTTCTCATGTCAA+AGG | + | chr4.4:29650217-29650236 | MS.gene006867:CDS | 35.0% | |
| GAATACATCTCCATAGTCAA+TGG | - | chr4.4:29650872-29650891 | None:intergenic | 35.0% | |
| GTACAAGTTCGAAAACTTCT+AGG | + | chr4.4:29650182-29650201 | MS.gene006867:CDS | 35.0% | |
| TAAATGCATCAGAGTTTGCA+AGG | - | chr4.4:29650558-29650577 | None:intergenic | 35.0% | |
| TAACGACTGATACCTTTGAT+TGG | + | chr4.4:29651079-29651098 | MS.gene006867:CDS | 35.0% | |
| TCAACTGACTATAGCCTAAA+GGG | + | chr4.4:29649852-29649871 | MS.gene006867:CDS | 35.0% | |
| TCCAATAACACACATTAACG+TGG | - | chr4.4:29650355-29650374 | None:intergenic | 35.0% | |
| TCCACGTTAATGTGTGTTAT+TGG | + | chr4.4:29650351-29650370 | MS.gene006867:intron | 35.0% | |
| TGAGAAGAATGTTCTTAGCA+TGG | - | chr4.4:29650211-29650230 | None:intergenic | 35.0% | |
| TGCAAACTCTGATGCATTTA+TGG | + | chr4.4:29650558-29650577 | MS.gene006867:CDS | 35.0% | |
| TTACATTGCTCATTGCTGTA+GGG | + | chr4.4:29649756-29649775 | MS.gene006867:intron | 35.0% | |
| TTCAACTGACTATAGCCTAA+AGG | + | chr4.4:29649851-29649870 | MS.gene006867:CDS | 35.0% | |
| TTGTATTCTCATCACCCTTT+AGG | - | chr4.4:29649869-29649888 | None:intergenic | 35.0% | |
| TTGTCTTTCTCAGTCAAAGT+GGG | - | chr4.4:29650083-29650102 | None:intergenic | 35.0% | |
| TTGTTTCAGTTGGATAGGTT+TGG | - | chr4.4:29649814-29649833 | None:intergenic | 35.0% | |
| ! | CAAAATTGGTGGCTAAATAC+AGG | + | chr4.4:29651019-29651038 | MS.gene006867:CDS | 35.0% |
| ! | TGGTGAGTATTGTAATTCGA+GGG | + | chr4.4:29649638-29649657 | MS.gene006867:intron | 35.0% |
| ! | TTACCTTGTTTCAGTTGGAT+AGG | - | chr4.4:29649819-29649838 | None:intergenic | 35.0% |
| ! | TTGGTGAGTATTGTAATTCG+AGG | + | chr4.4:29649637-29649656 | MS.gene006867:intron | 35.0% |
| !! | ATATTGGTTCTAACTAGAGG+AGG | + | chr4.4:29650988-29651007 | MS.gene006867:CDS | 35.0% |
| !! | CTCATATTGGTTCTAACTAG+AGG | + | chr4.4:29650985-29651004 | MS.gene006867:CDS | 35.0% |
| !! | GTGCAAACGATCTTAGTTTT+GGG | - | chr4.4:29648702-29648721 | None:intergenic | 35.0% |
| !! | TATTGGTTCTAACTAGAGGA+GGG | + | chr4.4:29650989-29651008 | MS.gene006867:CDS | 35.0% |
| AACTTGCAAATGTATGTGGC+AGG | + | chr4.4:29650495-29650514 | MS.gene006867:intron | 40.0% | |
| AAGAAGCTAGACTCTCCAAT+GGG | - | chr4.4:29650930-29650949 | None:intergenic | 40.0% | |
| AAGGAAGATATCATGGCTTG+GGG | + | chr4.4:29650101-29650120 | MS.gene006867:CDS | 40.0% | |
| ACAAGGAAGATATCATGGCT+TGG | + | chr4.4:29650099-29650118 | MS.gene006867:CDS | 40.0% | |
| AGAAATCCAGTTCGAATCTC+AGG | - | chr4.4:29649783-29649802 | None:intergenic | 40.0% | |
| AGACATAGCTTGATATTCCG+AGG | + | chr4.4:29651126-29651145 | MS.gene006867:CDS | 40.0% | |
| AGTCAATGATCAAATCTCCC+CGG | + | chr4.4:29650701-29650720 | MS.gene006867:CDS | 40.0% | |
| ATCACTGCATGACCAATCAA+AGG | - | chr4.4:29651094-29651113 | None:intergenic | 40.0% | |
| ATTGTACGAACAGCAAGTTC+TGG | - | chr4.4:29650820-29650839 | None:intergenic | 40.0% | |
| CAAGGAAGATATCATGGCTT+GGG | + | chr4.4:29650100-29650119 | MS.gene006867:CDS | 40.0% | |
| CACTTTGACTGAGAAAGACA+AGG | + | chr4.4:29650082-29650101 | MS.gene006867:CDS | 40.0% | |
| CATACATTTGCAAGTTGCAG+AGG | - | chr4.4:29650491-29650510 | None:intergenic | 40.0% | |
| CTCCATGAGCTACAAAAAGT+TGG | + | chr4.4:29649890-29649909 | MS.gene006867:CDS | 40.0% | |
| CTGCAACTTGCAAATGTATG+TGG | + | chr4.4:29650491-29650510 | MS.gene006867:intron | 40.0% | |
| CTTACATTGCTCATTGCTGT+AGG | + | chr4.4:29649755-29649774 | MS.gene006867:intron | 40.0% | |
| CTTGTCTTTCTCAGTCAAAG+TGG | - | chr4.4:29650084-29650103 | None:intergenic | 40.0% | |
| GATTCGAACTGGATTTCTCA+AGG | + | chr4.4:29649785-29649804 | MS.gene006867:CDS | 40.0% | |
| GCAGAAGCAGCACTTAATAT+TGG | - | chr4.4:29651159-29651178 | None:intergenic | 40.0% | |
| GCGCTTTCATTTGTTCGAAA+AGG | + | chr4.4:29650149-29650168 | MS.gene006867:CDS | 40.0% | |
| GCTAGATTCAACTTCTCTCA+TGG | + | chr4.4:29648786-29648805 | MS.gene006867:CDS | 40.0% | |
| GGAACGACAACAGAAAGAAT+TGG | - | chr4.4:29651054-29651073 | None:intergenic | 40.0% | |
| GTGCAATATCCAAGGAAAAC+CGG | + | chr4.4:29650654-29650673 | MS.gene006867:CDS | 40.0% | |
| GTGTGACAAAGAATTGGGTT+TGG | + | chr4.4:29649980-29649999 | MS.gene006867:CDS | 40.0% | |
| TACATTGCTCATTGCTGTAG+GGG | + | chr4.4:29649757-29649776 | MS.gene006867:intron | 40.0% | |
| TATCAAGCTATGTCTAGCAG+GGG | - | chr4.4:29651121-29651140 | None:intergenic | 40.0% | |
| TGATAATCTTAGAGCTGCCA+TGG | + | chr4.4:29648836-29648855 | MS.gene006867:CDS | 40.0% | |
| TGGTTCTCATGAGTATCATC+AGG | + | chr4.4:29648806-29648825 | MS.gene006867:CDS | 40.0% | |
| ! | AGCCAACTTTTTGTAGCTCA+TGG | - | chr4.4:29649895-29649914 | None:intergenic | 40.0% |
| ! | CGTGCAAACGATCTTAGTTT+TGG | - | chr4.4:29648703-29648722 | None:intergenic | 40.0% |
| ! | TACCTTAGTATCGAGCATGA+CGG | - | chr4.4:29648883-29648902 | None:intergenic | 40.0% |
| ! | TGTTCGAAAAGGTTCTGATC+TGG | + | chr4.4:29650160-29650179 | MS.gene006867:CDS | 40.0% |
| !! | AGAACTTGCTGTTCGTACAA+TGG | + | chr4.4:29650819-29650838 | MS.gene006867:CDS | 40.0% |
| AACATCAGTAGCTTCAGCTC+TGG | - | chr4.4:29650731-29650750 | None:intergenic | 45.0% | |
| AACTAAGATCGTTTGCACGC+TGG | + | chr4.4:29648704-29648723 | MS.gene006867:CDS | 45.0% | |
| ACAGACTGTGTCATGCTTAG+TGG | + | chr4.4:29650772-29650791 | MS.gene006867:CDS | 45.0% | |
| ACTAAGATCGTTTGCACGCT+GGG | + | chr4.4:29648705-29648724 | MS.gene006867:CDS | 45.0% | |
| AGGAGGGACTACTGCAAAAT+TGG | + | chr4.4:29651005-29651024 | MS.gene006867:CDS | 45.0% | |
| AGGGACTACTGCAAAATTGG+TGG | + | chr4.4:29651008-29651027 | MS.gene006867:CDS | 45.0% | |
| ATGGGAATAGACCTAGATGC+GGG | - | chr4.4:29648732-29648751 | None:intergenic | 45.0% | |
| ATTTGCCCTTCAATGTGCCA+AGG | + | chr4.4:29651218-29651237 | MS.gene006867:CDS | 45.0% | |
| CAAAGTTTGCAACCCCTTCT+TGG | - | chr4.4:29650528-29650547 | None:intergenic | 45.0% | |
| CATGGGAATAGACCTAGATG+CGG | - | chr4.4:29648733-29648752 | None:intergenic | 45.0% | |
| CTTCAATGTGCCAAGGGAAA+GGG | + | chr4.4:29651225-29651244 | MS.gene006867:CDS | 45.0% | |
| CTTTCCCTTGGCACATTGAA+GGG | - | chr4.4:29651226-29651245 | None:intergenic | 45.0% | |
| GAAGAAGCTAGACTCTCCAA+TGG | - | chr4.4:29650931-29650950 | None:intergenic | 45.0% | |
| GAGAATTCCGGTATTCTCCA+TGG | - | chr4.4:29648856-29648875 | None:intergenic | 45.0% | |
| TGATGTTGCGAATGCAGTTC+TGG | + | chr4.4:29650744-29650763 | MS.gene006867:CDS | 45.0% | |
| TGCTAGAGCAGCTCTCATAT+TGG | + | chr4.4:29650972-29650991 | MS.gene006867:CDS | 45.0% | |
| TGTGAGAACTCTGCTGTTCT+AGG | + | chr4.4:29650014-29650033 | MS.gene006867:CDS | 45.0% | |
| TTTGCCCTTCAATGTGCCAA+GGG | + | chr4.4:29651219-29651238 | MS.gene006867:CDS | 45.0% | |
| ! | AAGGTATCAGTCGTTAGCTC+AGG | - | chr4.4:29651075-29651094 | None:intergenic | 45.0% |
| ! | GCAGGTTGAAAACCAAGAAG+GGG | + | chr4.4:29650513-29650532 | MS.gene006867:intron | 45.0% |
| ! | GGCAGGTTGAAAACCAAGAA+GGG | + | chr4.4:29650512-29650531 | MS.gene006867:intron | 45.0% |
| ! | TGGCAGGTTGAAAACCAAGA+AGG | + | chr4.4:29650511-29650530 | MS.gene006867:intron | 45.0% |
| !!! | ATTTTTTATTATTTTTTTCA+TGG | + | chr4.4:29650255-29650274 | MS.gene006867:intron | 5.0% |
| AAAGGGACTCTGCGTTAACG+GGG | + | chr4.4:29651242-29651261 | MS.gene006867:CDS | 50.0% | |
| ACAGAAAGAATTGGCGTGCC+TGG | - | chr4.4:29651045-29651064 | None:intergenic | 50.0% | |
| AGAGCTGCCATGGAGAATAC+CGG | + | chr4.4:29648846-29648865 | MS.gene006867:CDS | 50.0% | |
| AGTGTCATACTCTGCGCAGA+TGG | + | chr4.4:29649933-29649952 | MS.gene006867:CDS | 50.0% | |
| ATCTGAGTCGCAGTAACGAC+CGG | - | chr4.4:29650676-29650695 | None:intergenic | 50.0% | |
| CCTTCAATGTGCCAAGGGAA+AGG | + | chr4.4:29651224-29651243 | MS.gene006867:CDS | 50.0% | |
| CCTTTCCCTTGGCACATTGA+AGG | - | chr4.4:29651227-29651246 | None:intergenic | 50.0% | |
| CGCAAAAGCTTCTCGACCAT+GGG | - | chr4.4:29648750-29648769 | None:intergenic | 50.0% | |
| CGCATCTAGGTCTATTCCCA+TGG | + | chr4.4:29648731-29648750 | MS.gene006867:CDS | 50.0% | |
| CGTTAACGGGGATTCTGTTG+TGG | + | chr4.4:29651254-29651273 | MS.gene006867:CDS | 50.0% | |
| CGTTACTGCGACTCAGATGT+TGG | + | chr4.4:29650678-29650697 | MS.gene006867:CDS | 50.0% | |
| CTTAGTGGTGAAACTGCTGC+TGG | + | chr4.4:29650787-29650806 | MS.gene006867:CDS | 50.0% | |
| GAAAGGGACTCTGCGTTAAC+GGG | + | chr4.4:29651241-29651260 | MS.gene006867:CDS | 50.0% | |
| GAACAGCAGAGTTCTCACAG+CGG | - | chr4.4:29650013-29650032 | None:intergenic | 50.0% | |
| GATGCATTTATGGTGGCACG+TGG | + | chr4.4:29650568-29650587 | MS.gene006867:CDS | 50.0% | |
| GGAAAGGGACTCTGCGTTAA+CGG | + | chr4.4:29651240-29651259 | MS.gene006867:CDS | 50.0% | |
| TAATCTGCCTGGAGTCGTAG+TGG | + | chr4.4:29650052-29650071 | MS.gene006867:CDS | 50.0% | |
| TCGCAAAAGCTTCTCGACCA+TGG | - | chr4.4:29648751-29648770 | None:intergenic | 50.0% | |
| TGGCTCATGATGTGAAGCCT+GGG | + | chr4.4:29649910-29649929 | MS.gene006867:CDS | 50.0% | |
| TTGGCTCATGATGTGAAGCC+TGG | + | chr4.4:29649909-29649928 | MS.gene006867:CDS | 50.0% | |
| ! | AGACTCTCCAATGGGCTCAT+GGG | - | chr4.4:29650922-29650941 | None:intergenic | 50.0% |
| ! | TAGACTCTCCAATGGGCTCA+TGG | - | chr4.4:29650923-29650942 | None:intergenic | 50.0% |
| ! | TCAGTAGCTTCAGCTCTGGT+TGG | - | chr4.4:29650727-29650746 | None:intergenic | 50.0% |
| ! | TTGGTGGCTAAATACAGGCC+AGG | + | chr4.4:29651024-29651043 | MS.gene006867:CDS | 50.0% |
| !! | CAGTAACGACCGGTTTTCCT+TGG | - | chr4.4:29650666-29650685 | None:intergenic | 50.0% |
| !! | GCTGAGAGCACCATTGACTA+TGG | + | chr4.4:29650859-29650878 | MS.gene006867:CDS | 50.0% |
| !! | GTTGCGAATGCAGTTCTGGA+TGG | + | chr4.4:29650748-29650767 | MS.gene006867:CDS | 50.0% |
| AACGCAGAGTCCCTTTCCCT+TGG | - | chr4.4:29651238-29651257 | None:intergenic | 55.0% | |
| ACCAGTACCCATGAGCCCAT+TGG | + | chr4.4:29650912-29650931 | MS.gene006867:CDS | 55.0% | |
| CATGACGGCGCAGAGAATTC+CGG | - | chr4.4:29648868-29648887 | None:intergenic | 55.0% | |
| CGCCGTCATGCTCGATACTA+AGG | + | chr4.4:29648878-29648897 | MS.gene006867:CDS | 55.0% | |
| GAGAGCTGCTCTAGCAGAGT+TGG | - | chr4.4:29650968-29650987 | None:intergenic | 55.0% | |
| GGAAGATCCACTACGACTCC+AGG | - | chr4.4:29650062-29650081 | None:intergenic | 55.0% | |
| TAGGGGCCTGAGATTCGAAC+TGG | + | chr4.4:29649774-29649793 | MS.gene006867:intron | 55.0% | |
| ! | GTCGAGAAGCTTTTGCGAGC+AGG | + | chr4.4:29648753-29648772 | MS.gene006867:CDS | 55.0% |
| ! | GTTGTGGTTCTGCATCGCGT+GGG | + | chr4.4:29651270-29651289 | MS.gene006867:CDS | 55.0% |
| ! | TAGCTTCAGCTCTGGTTGGC+CGG | - | chr4.4:29650723-29650742 | None:intergenic | 55.0% |
| ! | TCCAATGGGCTCATGGGTAC+TGG | - | chr4.4:29650916-29650935 | None:intergenic | 55.0% |
| ! | TGTTGTGGTTCTGCATCGCG+TGG | + | chr4.4:29651269-29651288 | MS.gene006867:CDS | 55.0% |
| ATGGTGGCACGTGGTGACCT+TGG | + | chr4.4:29650577-29650596 | MS.gene006867:CDS | 60.0% | |
| GCGCAGAGTATGACACTCCC+AGG | - | chr4.4:29649930-29649949 | None:intergenic | 60.0% | |
| GGCACGTGGTGACCTTGGAA+TGG | + | chr4.4:29650582-29650601 | MS.gene006867:CDS | 60.0% | |
| ! | AGCTTCAGCTCTGGTTGGCC+GGG | - | chr4.4:29650722-29650741 | None:intergenic | 60.0% |
| ! | GCTTCAGCTCTGGTTGGCCG+GGG | - | chr4.4:29650721-29650740 | None:intergenic | 65.0% |
| GCACGCTGGGACCCGCATCT+AGG | + | chr4.4:29648718-29648737 | MS.gene006867:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 29648672 | 29651329 | 29648672 | ID=MS.gene006867 |
| chr4.4 | mRNA | 29648672 | 29651329 | 29648672 | ID=MS.gene006867.t1;Parent=MS.gene006867 |
| chr4.4 | exon | 29648672 | 29648899 | 29648672 | ID=MS.gene006867.t1.exon1;Parent=MS.gene006867.t1 |
| chr4.4 | CDS | 29648672 | 29648899 | 29648672 | ID=cds.MS.gene006867.t1;Parent=MS.gene006867.t1 |
| chr4.4 | exon | 29649777 | 29650238 | 29649777 | ID=MS.gene006867.t1.exon2;Parent=MS.gene006867.t1 |
| chr4.4 | CDS | 29649777 | 29650238 | 29649777 | ID=cds.MS.gene006867.t1;Parent=MS.gene006867.t1 |
| chr4.4 | exon | 29650517 | 29651329 | 29650517 | ID=MS.gene006867.t1.exon3;Parent=MS.gene006867.t1 |
| chr4.4 | CDS | 29650517 | 29651329 | 29650517 | ID=cds.MS.gene006867.t1;Parent=MS.gene006867.t1 |
| Gene Sequence |
| Protein sequence |
