Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56458.t1 | XP_003607828.2 | 96 | 500 | 16 | 1 | 4 | 503 | 2 | 497 | 2.70E-268 | 934.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56458.t1 | Q42954 | 85.1 | 497 | 70 | 1 | 7 | 503 | 16 | 508 | 1.9e-241 | 836.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56458.t1 | G7JHK8 | 96.0 | 500 | 16 | 1 | 4 | 503 | 2 | 497 | 2.0e-268 | 934.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56458.t1 | MTR_4g083340 | 96.000 | 500 | 16 | 1 | 4 | 503 | 2 | 497 | 0.0 | 981 |
| MS.gene56458.t1 | MTR_7g100760 | 89.608 | 510 | 36 | 3 | 1 | 503 | 1 | 500 | 0.0 | 936 |
| MS.gene56458.t1 | MTR_4g083330 | 82.937 | 504 | 54 | 4 | 1 | 503 | 1 | 473 | 0.0 | 814 |
| MS.gene56458.t1 | MTR_6g004020 | 75.556 | 495 | 117 | 1 | 9 | 503 | 20 | 510 | 0.0 | 788 |
| MS.gene56458.t1 | MTR_1g061630 | 41.304 | 506 | 277 | 9 | 11 | 503 | 30 | 528 | 8.08e-119 | 359 |
| MS.gene56458.t1 | MTR_7g103420 | 40.954 | 503 | 281 | 9 | 11 | 503 | 30 | 526 | 8.66e-119 | 359 |
| MS.gene56458.t1 | MTR_1g091040 | 39.960 | 503 | 285 | 8 | 11 | 503 | 30 | 525 | 1.35e-118 | 358 |
| MS.gene56458.t1 | MTR_1g061630 | 41.700 | 506 | 259 | 10 | 11 | 503 | 30 | 512 | 5.90e-118 | 357 |
| MS.gene56458.t1 | MTR_7g103420 | 40.154 | 518 | 279 | 11 | 11 | 503 | 30 | 541 | 1.81e-116 | 354 |
| MS.gene56458.t1 | MTR_7g103420 | 40.235 | 425 | 243 | 7 | 89 | 503 | 14 | 437 | 5.51e-98 | 303 |
| MS.gene56458.t1 | MTR_1g091040 | 41.953 | 379 | 212 | 6 | 128 | 500 | 13 | 389 | 6.75e-94 | 291 |
| MS.gene56458.t1 | MTR_5g014140 | 34.917 | 484 | 278 | 11 | 5 | 485 | 73 | 522 | 2.13e-84 | 271 |
| MS.gene56458.t1 | MTR_6g034195 | 34.908 | 487 | 268 | 12 | 8 | 485 | 104 | 550 | 5.33e-79 | 258 |
| MS.gene56458.t1 | MTR_1g099360 | 34.979 | 486 | 269 | 12 | 8 | 485 | 102 | 548 | 4.41e-78 | 255 |
| MS.gene56458.t1 | MTR_5g014140 | 39.645 | 338 | 186 | 7 | 5 | 336 | 73 | 398 | 6.04e-74 | 240 |
| MS.gene56458.t1 | MTR_1g076540 | 31.412 | 503 | 286 | 12 | 10 | 488 | 90 | 557 | 1.25e-67 | 228 |
| MS.gene56458.t1 | MTR_1g105965 | 31.515 | 495 | 297 | 12 | 10 | 491 | 91 | 556 | 7.06e-65 | 220 |
| MS.gene56458.t1 | MTR_1g105965 | 34.177 | 316 | 190 | 8 | 10 | 316 | 91 | 397 | 2.01e-47 | 169 |
| MS.gene56458.t1 | MTR_1g105965 | 29.204 | 226 | 142 | 8 | 10 | 226 | 91 | 307 | 3.10e-17 | 82.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56458.t1 | AT5G56350 | 85.800 | 500 | 67 | 1 | 4 | 503 | 3 | 498 | 0.0 | 880 |
| MS.gene56458.t1 | AT4G26390 | 81.325 | 498 | 89 | 1 | 6 | 503 | 4 | 497 | 0.0 | 848 |
| MS.gene56458.t1 | AT5G63680 | 76.056 | 497 | 115 | 1 | 7 | 503 | 18 | 510 | 0.0 | 792 |
| MS.gene56458.t1 | AT5G63680 | 76.056 | 497 | 115 | 1 | 7 | 503 | 18 | 510 | 0.0 | 792 |
| MS.gene56458.t1 | AT5G63680 | 76.056 | 497 | 115 | 1 | 7 | 503 | 18 | 510 | 0.0 | 792 |
| MS.gene56458.t1 | AT5G08570 | 75.354 | 495 | 118 | 1 | 9 | 503 | 20 | 510 | 0.0 | 787 |
| MS.gene56458.t1 | AT5G08570 | 75.354 | 495 | 118 | 1 | 9 | 503 | 20 | 510 | 0.0 | 787 |
| MS.gene56458.t1 | AT5G08570 | 75.354 | 495 | 118 | 1 | 9 | 503 | 20 | 510 | 0.0 | 787 |
| MS.gene56458.t1 | AT3G04050 | 70.200 | 500 | 141 | 4 | 8 | 503 | 15 | 510 | 0.0 | 717 |
| MS.gene56458.t1 | AT3G55650 | 69.400 | 500 | 145 | 4 | 8 | 503 | 15 | 510 | 0.0 | 703 |
| MS.gene56458.t1 | AT3G25960 | 69.679 | 498 | 134 | 5 | 8 | 503 | 15 | 497 | 0.0 | 695 |
| MS.gene56458.t1 | AT3G55810 | 65.613 | 506 | 136 | 6 | 8 | 503 | 15 | 492 | 0.0 | 650 |
| MS.gene56458.t1 | AT3G52990 | 42.346 | 503 | 274 | 9 | 11 | 503 | 30 | 526 | 1.14e-123 | 372 |
| MS.gene56458.t1 | AT2G36580 | 41.153 | 503 | 280 | 7 | 11 | 503 | 30 | 526 | 1.29e-120 | 364 |
| MS.gene56458.t1 | AT3G52990 | 41.336 | 479 | 265 | 9 | 35 | 503 | 1 | 473 | 2.35e-114 | 346 |
| MS.gene56458.t1 | AT5G52920 | 38.142 | 409 | 225 | 9 | 8 | 408 | 109 | 497 | 1.29e-77 | 254 |
| MS.gene56458.t1 | AT1G32440 | 37.198 | 414 | 239 | 8 | 6 | 415 | 96 | 492 | 9.03e-77 | 252 |
| MS.gene56458.t1 | AT3G22960 | 31.124 | 498 | 292 | 12 | 10 | 488 | 118 | 583 | 3.59e-68 | 229 |
| MS.gene56458.t1 | AT3G49160 | 32.129 | 249 | 146 | 8 | 94 | 325 | 437 | 679 | 1.94e-21 | 98.6 |
| MS.gene56458.t1 | AT3G49160 | 32.129 | 249 | 146 | 8 | 94 | 325 | 349 | 591 | 2.11e-21 | 98.2 |
Find 129 sgRNAs with CRISPR-Local
Find 218 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCAAATTCAGATGCATTTA+TGG | 0.143820 | 4.4:+29779358 | MS.gene56458:CDS |
| CAAAATTTGCAACTCCTTCT+TGG | 0.173017 | 4.4:-29779325 | None:intergenic |
| CGTGCACACGATCTTCGTTT+TGG | 0.253113 | 4.4:-29777302 | None:intergenic |
| CAAAATTAGTGGCTAAATAT+AGG | 0.259428 | 4.4:+29779819 | MS.gene56458:CDS |
| AGCTAAAGCATCACTTATAT+TGG | 0.277757 | 4.4:+29779772 | MS.gene56458:CDS |
| TGACATGAGAAGTATGTTCT+TGG | 0.306502 | 4.4:-29779014 | None:intergenic |
| GCAATCATGTCAATATTATT+AGG | 0.308623 | 4.4:-29778929 | None:intergenic |
| TGATAAAACTTTAAATGATA+TGG | 0.309913 | 4.4:-29778759 | None:intergenic |
| TCAACTGACTATGACATAAA+AGG | 0.310805 | 4.4:+29778653 | MS.gene56458:CDS |
| TGATGTTGCCAATGCAGTTC+TGG | 0.311413 | 4.4:+29779544 | MS.gene56458:CDS |
| TATCCCCGTTGGAGACATTC+AGG | 0.313862 | 4.4:-29778029 | None:intergenic |
| ACTATGGAGATGTATTTAAA+AGG | 0.323244 | 4.4:+29779675 | MS.gene56458:CDS |
| TGCGCATAATACAATGCTTC+CGG | 0.336489 | 4.4:-29778729 | None:intergenic |
| AGAAAGAATGTTAATCTTCC+TGG | 0.353613 | 4.4:+29778842 | MS.gene56458:CDS |
| TGATCATTGACTCCAACATC+TGG | 0.357864 | 4.4:-29779490 | None:intergenic |
| ACGAAGATCGTGTGCACGTT+GGG | 0.359686 | 4.4:+29777307 | MS.gene56458:CDS |
| AAAGCCTGTCCAACTGAAAC+AGG | 0.359964 | 4.4:+29778613 | MS.gene56458:CDS |
| ATTGCAGAGACCCTTCGTTT+TGG | 0.367005 | 4.4:-29780035 | None:intergenic |
| AGAACTTGCTGTTCGAACTA+TGG | 0.369701 | 4.4:+29779619 | MS.gene56458:CDS |
| AGCTTCGTCTGCAGTTAAAA+TGG | 0.375669 | 4.4:+29779742 | MS.gene56458:CDS |
| CGAAGGGTCTCTGCAATAAC+GGG | 0.376842 | 4.4:+29780041 | MS.gene56458:CDS |
| TGTCTTTCTCAGTTAATGTT+GGG | 0.379208 | 4.4:-29778880 | None:intergenic |
| GCTAGAAATATCTTCTCTAT+TGG | 0.379339 | 4.4:-29779410 | None:intergenic |
| AAATACATCTCCATAGTTGA+TGG | 0.388097 | 4.4:-29779669 | None:intergenic |
| TATGTCATAGTCAGTTGAAA+TGG | 0.395169 | 4.4:-29778648 | None:intergenic |
| AAAATTAGTGGCTAAATATA+GGG | 0.399080 | 4.4:+29779820 | MS.gene56458:CDS |
| CTTTCCATCCTTGAGAAATC+CGG | 0.403259 | 4.4:-29778594 | None:intergenic |
| AGAAATCCGGTTCGAATCTC+CGG | 0.409460 | 4.4:-29778581 | None:intergenic |
| TGACCCTGTTTCAGTTGGAC+AGG | 0.413797 | 4.4:-29778617 | None:intergenic |
| GCAGAACCCGCGCTCAGTAC+TGG | 0.426796 | 4.4:-29779956 | None:intergenic |
| AGATGTATTTAAAAGGATAA+TGG | 0.428807 | 4.4:+29779682 | MS.gene56458:CDS |
| ATCTGGGTTGCAGTGACAAC+CGG | 0.431464 | 4.4:-29779473 | None:intergenic |
| TTGTCTTTCTCAGTTAATGT+TGG | 0.432179 | 4.4:-29778881 | None:intergenic |
| ATGCCCTGAATGTCTCCAAC+GGG | 0.434807 | 4.4:+29778025 | MS.gene56458:CDS |
| GCGCATAATACAATGCTTCC+GGG | 0.435708 | 4.4:-29778728 | None:intergenic |
| TCCAATGGGTTCATCGGTAC+TGG | 0.437158 | 4.4:-29779713 | None:intergenic |
| GCTGAGAGTACCATCAACTA+TGG | 0.439742 | 4.4:+29779659 | MS.gene56458:CDS |
| TGTTCGAAAAGGTTCTGATC+TGG | 0.444704 | 4.4:+29778961 | MS.gene56458:CDS |
| CAGTGACAACCGGCTTTCCT+TGG | 0.445051 | 4.4:-29779463 | None:intergenic |
| GGAACGACAACAGAAAGAAT+TGG | 0.446886 | 4.4:-29779851 | None:intergenic |
| GTGGAAGTTCGCAAGTTGTT+GGG | 0.453796 | 4.4:+29778983 | MS.gene56458:CDS |
| ACAAGGAAGATATCATGGTC+TGG | 0.455969 | 4.4:+29778900 | MS.gene56458:CDS |
| CGTTTCCTGATGATACTCAT+AGG | 0.458132 | 4.4:-29777413 | None:intergenic |
| AAAGGTATCGGTCTTAATCT+CGG | 0.458769 | 4.4:-29779873 | None:intergenic |
| CAAGGAAGATATCATGGTCT+GGG | 0.464495 | 4.4:+29778901 | MS.gene56458:CDS |
| GCTTCCGCTCTGGTTGGCCT+AGG | 0.466606 | 4.4:-29779518 | None:intergenic |
| TTAAGACCGATACCTTTGAT+TGG | 0.467435 | 4.4:+29779879 | MS.gene56458:CDS |
| ATAGTTCGAACAGCAAGTTC+TGG | 0.469788 | 4.4:-29779617 | None:intergenic |
| TGTAGAAGCTTCTCCACCAT+TGG | 0.472652 | 4.4:-29777349 | None:intergenic |
| GCTCGTTTCAACTTCTCTCA+TGG | 0.486308 | 4.4:+29777388 | MS.gene56458:CDS |
| TCGGAATATCAAGCTATGTC+TGG | 0.489128 | 4.4:-29779924 | None:intergenic |
| AGGGAGTACTGCAAAATTAG+TGG | 0.490170 | 4.4:+29779808 | MS.gene56458:CDS |
| AAGGTATCGGTCTTAATCTC+GGG | 0.492658 | 4.4:-29779872 | None:intergenic |
| GGTGGAAGTTCGCAAGTTGT+TGG | 0.496316 | 4.4:+29778982 | MS.gene56458:CDS |
| CTATTGGAATTTCCATTCCA+AGG | 0.499540 | 4.4:-29779394 | None:intergenic |
| TTATCATGTGACAAAGAAGC+TGG | 0.501799 | 4.4:+29778776 | MS.gene56458:CDS |
| ACGAAGGGTCTCTGCAATAA+CGG | 0.502361 | 4.4:+29780040 | MS.gene56458:CDS |
| AAGTGATGCTTTAGCTGAGT+TGG | 0.504034 | 4.4:-29779765 | None:intergenic |
| TTTCCTGACCCTGTTTCAGT+TGG | 0.504054 | 4.4:-29778622 | None:intergenic |
| AATATCAAGCTATGTCTGGC+AGG | 0.504653 | 4.4:-29779920 | None:intergenic |
| ACAGATTGTGTCATGCTTAG+TGG | 0.511497 | 4.4:+29779572 | MS.gene56458:CDS |
| TTGGCTCATGATGTGAAGCC+CGG | 0.514070 | 4.4:+29778710 | MS.gene56458:CDS |
| TGCATCGAGGTCTGTTCCAA+TGG | 0.514723 | 4.4:+29777333 | MS.gene56458:CDS |
| GAAAGACAAGGAAGATATCA+TGG | 0.518423 | 4.4:+29778895 | MS.gene56458:CDS |
| ATGGTGGCACGTGGCGACCT+TGG | 0.519759 | 4.4:+29779377 | MS.gene56458:CDS |
| TAAATGCATCTGAATTTGCT+AGG | 0.522964 | 4.4:-29779355 | None:intergenic |
| TGGTTCCTATGAGTATCATC+AGG | 0.531881 | 4.4:+29777408 | MS.gene56458:CDS |
| GGCACGTGGCGACCTTGGAA+TGG | 0.535798 | 4.4:+29779382 | MS.gene56458:CDS |
| GGCAGGGACCTCATCACTGC+AGG | 0.536997 | 4.4:-29779903 | None:intergenic |
| TGTGGTGGCTCTGCATCGTG+TGG | 0.538502 | 4.4:+29780069 | MS.gene56458:CDS |
| TGTGAAAACTCTGCCATGCT+TGG | 0.539390 | 4.4:+29778815 | MS.gene56458:CDS |
| TAGGGGCCGGAGATTCGAAC+CGG | 0.540153 | 4.4:+29778575 | MS.gene56458:intron |
| CTTAGTGGTGAAACTGCTGC+TGG | 0.547208 | 4.4:+29779587 | MS.gene56458:CDS |
| TCAGTAGCTTCCGCTCTGGT+TGG | 0.547855 | 4.4:-29779524 | None:intergenic |
| GTGTAATATCCAAGGAAAGC+CGG | 0.548048 | 4.4:+29779454 | MS.gene56458:CDS |
| GATCATTGACTCCAACATCT+GGG | 0.548144 | 4.4:-29779489 | None:intergenic |
| AACATCAGTAGCTTCCGCTC+TGG | 0.555100 | 4.4:-29779528 | None:intergenic |
| TGTCCAACTGAAACAGGGTC+AGG | 0.555529 | 4.4:+29778619 | MS.gene56458:CDS |
| GATTCGAACCGGATTTCTCA+AGG | 0.555877 | 4.4:+29778586 | MS.gene56458:CDS |
| TAATCTTCCTGGAGTCATAG+TGG | 0.556349 | 4.4:+29778853 | MS.gene56458:CDS |
| CGAACCGGATTTCTCAAGGA+TGG | 0.557776 | 4.4:+29778590 | MS.gene56458:CDS |
| GGGAGATCCACTATGACTCC+AGG | 0.558159 | 4.4:-29778860 | None:intergenic |
| AGACTCTCCAATGGGTTCAT+CGG | 0.562346 | 4.4:-29779719 | None:intergenic |
| TGTGCCATCCAGAACTGCAT+TGG | 0.563561 | 4.4:-29779552 | None:intergenic |
| CACTTCACAGATATCCCCGT+TGG | 0.564138 | 4.4:-29778040 | None:intergenic |
| AGAACCGCTATGCAAAATAC+CGG | 0.570939 | 4.4:+29777448 | MS.gene56458:CDS |
| ATTCTTTCTTTCGCCAAGCA+TGG | 0.572600 | 4.4:-29778828 | None:intergenic |
| ATTGGAACAGACCTCGATGC+AGG | 0.573891 | 4.4:-29777331 | None:intergenic |
| GTGGAGAAGCTTCTACAAGC+AGG | 0.573930 | 4.4:+29777355 | MS.gene56458:CDS |
| CATTCAATACGCCAAAACGA+AGG | 0.574255 | 4.4:+29780024 | MS.gene56458:CDS |
| ATTCAATACGCCAAAACGAA+GGG | 0.574735 | 4.4:+29780025 | MS.gene56458:CDS |
| TTGATTCCAGTACTGAGCGC+GGG | 0.574942 | 4.4:+29779950 | MS.gene56458:CDS |
| GAACATACTTCTCATGTCAA+AGG | 0.576824 | 4.4:+29779018 | MS.gene56458:CDS |
| ACCAGTACCGATGAACCCAT+TGG | 0.577303 | 4.4:+29779712 | MS.gene56458:CDS |
| ACGAAGCTAGACTCTCCAAT+GGG | 0.577340 | 4.4:-29779727 | None:intergenic |
| TTAGTGGCTAAATATAGGGC+AGG | 0.578508 | 4.4:+29779824 | MS.gene56458:CDS |
| CTGCAATAACGGGGATTCTG+TGG | 0.578914 | 4.4:+29780051 | MS.gene56458:CDS |
| TGTCACTGCAACCCAGATGT+TGG | 0.580493 | 4.4:+29779478 | MS.gene56458:CDS |
| ATCCCCGTTGGAGACATTCA+GGG | 0.580568 | 4.4:-29778028 | None:intergenic |
| TCGAAAAGGTTCTGATCTGG+TGG | 0.582142 | 4.4:+29778964 | MS.gene56458:CDS |
| GCAGGACCAATCAAAGGTAT+CGG | 0.584899 | 4.4:-29779885 | None:intergenic |
| ATTTATAAGTGTAATATCCA+AGG | 0.586611 | 4.4:+29779446 | MS.gene56458:CDS |
| CAATAACGGGGATTCTGTGG+TGG | 0.592591 | 4.4:+29780054 | MS.gene56458:CDS |
| AGCATTGTATTATGCGCAGA+TGG | 0.594225 | 4.4:+29778734 | MS.gene56458:CDS |
| AACGAAGATCGTGTGCACGT+TGG | 0.594667 | 4.4:+29777306 | MS.gene56458:CDS |
| GTGGTGGCTCTGCATCGTGT+GGG | 0.595088 | 4.4:+29780070 | MS.gene56458:CDS |
| ATCACTGCAGGACCAATCAA+AGG | 0.596790 | 4.4:-29779891 | None:intergenic |
| TCATGCAGAAACAACAGAAG+AGG | 0.601211 | 4.4:+29779988 | MS.gene56458:CDS |
| TGGTAGGTTGAAAACCAAGA+AGG | 0.603437 | 4.4:+29779311 | MS.gene56458:intron |
| TCAGTACTGGAATCAATCCT+CGG | 0.604595 | 4.4:-29779943 | None:intergenic |
| TGATTGGTCCTGCAGTGATG+AGG | 0.612325 | 4.4:+29779895 | MS.gene56458:CDS |
| AGACATAGCTTGATATTCCG+AGG | 0.613725 | 4.4:+29779926 | MS.gene56458:CDS |
| ATATCAAGCTATGTCTGGCA+GGG | 0.616261 | 4.4:-29779919 | None:intergenic |
| AATGCCCTGAATGTCTCCAA+CGG | 0.619635 | 4.4:+29778024 | MS.gene56458:CDS |
| GACGAAGCTAGACTCTCCAA+TGG | 0.625022 | 4.4:-29779728 | None:intergenic |
| ATCGAGGTCTGTTCCAATGG+TGG | 0.626260 | 4.4:+29777336 | MS.gene56458:CDS |
| GTTGCCAATGCAGTTCTGGA+TGG | 0.635150 | 4.4:+29779548 | MS.gene56458:CDS |
| AAATTCAGATGCATTTATGG+TGG | 0.635640 | 4.4:+29779361 | MS.gene56458:CDS |
| ATTGATTCCAGTACTGAGCG+CGG | 0.643875 | 4.4:+29779949 | MS.gene56458:CDS |
| AAGCCTGTCCAACTGAAACA+GGG | 0.645619 | 4.4:+29778614 | MS.gene56458:CDS |
| TTGATCCATAATGTCGACGA+TGG | 0.660084 | 4.4:+29777267 | None:intergenic |
| AAGGAAGATATCATGGTCTG+GGG | 0.677855 | 4.4:+29778902 | MS.gene56458:CDS |
| GATGCATTTATGGTGGCACG+TGG | 0.679278 | 4.4:+29779368 | MS.gene56458:CDS |
| ATCACCTAGGCCAACCAGAG+CGG | 0.699051 | 4.4:+29779514 | MS.gene56458:CDS |
| AGTCAATGATCAAATCACCT+AGG | 0.703441 | 4.4:+29779501 | MS.gene56458:CDS |
| AACATTAACTGAGAAAGACA+AGG | 0.707908 | 4.4:+29778883 | MS.gene56458:CDS |
| GCACGTTGGGACCTGCATCG+AGG | 0.708371 | 4.4:+29777320 | MS.gene56458:CDS |
| GAAGGGTCTCTGCAATAACG+GGG | 0.720462 | 4.4:+29780042 | MS.gene56458:CDS |
| TGCCCTGAATGTCTCCAACG+GGG | 0.738643 | 4.4:+29778026 | MS.gene56458:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATGTATATAAATTTGTAT+CGG | + | chr4.4:29777942-29777961 | MS.gene56458:intron | 10.0% |
| !! | TATATTTACATATATAATGA+CGG | + | chr4.4:29777670-29777689 | MS.gene56458:intron | 10.0% |
| !! | TGATAAAACTTTAAATGATA+TGG | - | chr4.4:29778762-29778781 | None:intergenic | 15.0% |
| !!! | TTACTGATATTTGTTATATA+TGG | + | chr4.4:29779226-29779245 | MS.gene56458:intron | 15.0% |
| !! | AAAATTAGTGGCTAAATATA+GGG | + | chr4.4:29779820-29779839 | MS.gene56458:CDS | 20.0% |
| !! | AGATGTATTTAAAAGGATAA+TGG | + | chr4.4:29779682-29779701 | MS.gene56458:CDS | 20.0% |
| !! | ATTTATAAGTGTAATATCCA+AGG | + | chr4.4:29779446-29779465 | MS.gene56458:CDS | 20.0% |
| !! | CATAAGATAAAAGATAGATA+AGG | - | chr4.4:29778537-29778556 | None:intergenic | 20.0% |
| !! | TATCTATTTGCATTGTTATA+GGG | + | chr4.4:29778557-29778576 | MS.gene56458:intron | 20.0% |
| !! | TATGTATAATATTGCATTTG+TGG | + | chr4.4:29777984-29778003 | MS.gene56458:intron | 20.0% |
| !! | TGAATTTAGTTACTTATTTC+TGG | + | chr4.4:29779256-29779275 | MS.gene56458:intron | 20.0% |
| !!! | GTCTCAATATATTTTTAAAC+CGG | - | chr4.4:29779092-29779111 | None:intergenic | 20.0% |
| !!! | TAAATGAGAGAGTAATTTTT+AGG | - | chr4.4:29777646-29777665 | None:intergenic | 20.0% |
| ! | ACTATGGAGATGTATTTAAA+AGG | + | chr4.4:29779675-29779694 | MS.gene56458:CDS | 25.0% |
| ! | ATCTATTTGCATTGTTATAG+GGG | + | chr4.4:29778558-29778577 | MS.gene56458:intron | 25.0% |
| ! | ATGTATAATCATGATTCATG+AGG | + | chr4.4:29778084-29778103 | MS.gene56458:intron | 25.0% |
| ! | CAAAATTAGTGGCTAAATAT+AGG | + | chr4.4:29779819-29779838 | MS.gene56458:CDS | 25.0% |
| ! | GCAATCATGTCAATATTATT+AGG | - | chr4.4:29778932-29778951 | None:intergenic | 25.0% |
| ! | GGTATCATCTAACAAAATTT+GGG | + | chr4.4:29779172-29779191 | MS.gene56458:intron | 25.0% |
| ! | GTATCTATTTGCATTGTTAT+AGG | + | chr4.4:29778556-29778575 | MS.gene56458:intron | 25.0% |
| ! | TGTATAATCATGATTCATGA+GGG | + | chr4.4:29778085-29778104 | MS.gene56458:intron | 25.0% |
| ! | TTCATGAAAATGAAAAGTTC+CGG | + | chr4.4:29779070-29779089 | MS.gene56458:intron | 25.0% |
| ! | TTCTTCATGAATCATGATTA+GGG | - | chr4.4:29778287-29778306 | None:intergenic | 25.0% |
| ! | TTGTACTAATTAGTGTATTG+CGG | - | chr4.4:29777826-29777845 | None:intergenic | 25.0% |
| !!! | CTTATATTGGTTTTAACTAG+AGG | + | chr4.4:29779785-29779804 | MS.gene56458:CDS | 25.0% |
| AAATACATCTCCATAGTTGA+TGG | - | chr4.4:29779672-29779691 | None:intergenic | 30.0% | |
| AAATTCAGATGCATTTATGG+TGG | + | chr4.4:29779361-29779380 | MS.gene56458:CDS | 30.0% | |
| AACATTAACTGAGAAAGACA+AGG | + | chr4.4:29778883-29778902 | MS.gene56458:CDS | 30.0% | |
| AGAAAGAATGTTAATCTTCC+TGG | + | chr4.4:29778842-29778861 | MS.gene56458:CDS | 30.0% | |
| AGCAAATTCAGATGCATTTA+TGG | + | chr4.4:29779358-29779377 | MS.gene56458:CDS | 30.0% | |
| CAATTCATTAAGTCCAACAA+TGG | - | chr4.4:29778503-29778522 | None:intergenic | 30.0% | |
| CATGATACACACAAATTATC+AGG | - | chr4.4:29778435-29778454 | None:intergenic | 30.0% | |
| GCTAGAAATATCTTCTCTAT+TGG | - | chr4.4:29779413-29779432 | None:intergenic | 30.0% | |
| GGGTATCATCTAACAAAATT+TGG | + | chr4.4:29779171-29779190 | MS.gene56458:intron | 30.0% | |
| GTATAATCATGATTCATGAG+GGG | + | chr4.4:29778086-29778105 | MS.gene56458:intron | 30.0% | |
| GTTCTTCATGAATCATGATT+AGG | - | chr4.4:29778288-29778307 | None:intergenic | 30.0% | |
| TATGTCATAGTCAGTTGAAA+TGG | - | chr4.4:29778651-29778670 | None:intergenic | 30.0% | |
| TCAAATAATAGCGGCTATTA+TGG | + | chr4.4:29777753-29777772 | MS.gene56458:intron | 30.0% | |
| TCAACTGACTATGACATAAA+AGG | + | chr4.4:29778653-29778672 | MS.gene56458:CDS | 30.0% | |
| TCAGTGTTGTCAAATAATAG+CGG | + | chr4.4:29777744-29777763 | MS.gene56458:intron | 30.0% | |
| TGTCTTTCTCAGTTAATGTT+GGG | - | chr4.4:29778883-29778902 | None:intergenic | 30.0% | |
| TTACTTCAAATGTATGTGGT+AGG | + | chr4.4:29779295-29779314 | MS.gene56458:intron | 30.0% | |
| TTCTCAAATAGTGGCTATAA+CGG | + | chr4.4:29777850-29777869 | MS.gene56458:intron | 30.0% | |
| TTGTCTTTCTCAGTTAATGT+TGG | - | chr4.4:29778884-29778903 | None:intergenic | 30.0% | |
| ! | AGCTAAAGCATCACTTATAT+TGG | + | chr4.4:29779772-29779791 | MS.gene56458:CDS | 30.0% |
| ! | TAAATGCATCTGAATTTGCT+AGG | - | chr4.4:29779358-29779377 | None:intergenic | 30.0% |
| ! | TACAAAGTGTTCTCAAATAG+TGG | + | chr4.4:29777841-29777860 | MS.gene56458:intron | 30.0% |
| ! | TCTGTTACTTCAAATGTATG+TGG | + | chr4.4:29779291-29779310 | MS.gene56458:intron | 30.0% |
| !!! | ATATTGGTTTTAACTAGAGG+AGG | + | chr4.4:29779788-29779807 | MS.gene56458:CDS | 30.0% |
| !!! | TATTGGTTTTAACTAGAGGA+GGG | + | chr4.4:29779789-29779808 | MS.gene56458:CDS | 30.0% |
| AGTCAATGATCAAATCACCT+AGG | + | chr4.4:29779501-29779520 | MS.gene56458:CDS | 35.0% | |
| ATTCAATACGCCAAAACGAA+GGG | + | chr4.4:29780025-29780044 | MS.gene56458:CDS | 35.0% | |
| CAAAATTTGCAACTCCTTCT+TGG | - | chr4.4:29779328-29779347 | None:intergenic | 35.0% | |
| CATATCAATGTTGTCAATCG+CGG | - | chr4.4:29777922-29777941 | None:intergenic | 35.0% | |
| CTATTGGAATTTCCATTCCA+AGG | - | chr4.4:29779397-29779416 | None:intergenic | 35.0% | |
| CTGTATGAGCTACAAAAAGT+TGG | + | chr4.4:29778691-29778710 | MS.gene56458:CDS | 35.0% | |
| GAAAGACAAGGAAGATATCA+TGG | + | chr4.4:29778895-29778914 | MS.gene56458:CDS | 35.0% | |
| GAACATACTTCTCATGTCAA+AGG | + | chr4.4:29779018-29779037 | MS.gene56458:CDS | 35.0% | |
| GTTGAATTGGTGTGAATTTG+TGG | + | chr4.4:29778372-29778391 | MS.gene56458:intron | 35.0% | |
| GTTGTATGAGTGTGAATTCA+AGG | + | chr4.4:29778472-29778491 | MS.gene56458:intron | 35.0% | |
| TACTTCTCATGTCAAAGGTA+TGG | + | chr4.4:29779023-29779042 | MS.gene56458:intron | 35.0% | |
| TTAAGACCGATACCTTTGAT+TGG | + | chr4.4:29779879-29779898 | MS.gene56458:CDS | 35.0% | |
| TTATCATGTGACAAAGAAGC+TGG | + | chr4.4:29778776-29778795 | MS.gene56458:CDS | 35.0% | |
| ! | AATACCGGTATTTTGCATAG+CGG | - | chr4.4:29777455-29777474 | None:intergenic | 35.0% |
| ! | GCACTTTCTTTTGTTCGAAA+AGG | + | chr4.4:29778950-29778969 | MS.gene56458:CDS | 35.0% |
| ! | TGACATGAGAAGTATGTTCT+TGG | - | chr4.4:29779017-29779036 | None:intergenic | 35.0% |
| !! | AAAGGTATCGGTCTTAATCT+CGG | - | chr4.4:29779876-29779895 | None:intergenic | 35.0% |
| !! | ATTATGGTGTTGTAGTGCTA+CGG | + | chr4.4:29777769-29777788 | MS.gene56458:intron | 35.0% |
| AACAGCCTCTTGTGTAAAAC+AGG | + | chr4.4:29778174-29778193 | MS.gene56458:intron | 40.0% | |
| AAGGAAGATATCATGGTCTG+GGG | + | chr4.4:29778902-29778921 | MS.gene56458:CDS | 40.0% | |
| AAGTGATGCTTTAGCTGAGT+TGG | - | chr4.4:29779768-29779787 | None:intergenic | 40.0% | |
| AATATCAAGCTATGTCTGGC+AGG | - | chr4.4:29779923-29779942 | None:intergenic | 40.0% | |
| ACAAGGAAGATATCATGGTC+TGG | + | chr4.4:29778900-29778919 | MS.gene56458:CDS | 40.0% | |
| ACAGATTGTGTCATGCTTAG+TGG | + | chr4.4:29779572-29779591 | MS.gene56458:CDS | 40.0% | |
| ACAGCCTCTTGTGTAAAACA+GGG | + | chr4.4:29778175-29778194 | MS.gene56458:intron | 40.0% | |
| ACCAATTCAACATTCAGTGC+AGG | - | chr4.4:29778363-29778382 | None:intergenic | 40.0% | |
| AGAACCGCTATGCAAAATAC+CGG | + | chr4.4:29777448-29777467 | MS.gene56458:CDS | 40.0% | |
| AGACATAGCTTGATATTCCG+AGG | + | chr4.4:29779926-29779945 | MS.gene56458:CDS | 40.0% | |
| AGATGCAACAAGCATCTCTA+TGG | - | chr4.4:29779133-29779152 | None:intergenic | 40.0% | |
| AGCATTGTATTATGCGCAGA+TGG | + | chr4.4:29778734-29778753 | MS.gene56458:CDS | 40.0% | |
| AGCTTCGTCTGCAGTTAAAA+TGG | + | chr4.4:29779742-29779761 | MS.gene56458:CDS | 40.0% | |
| AGTGTATTGCGGAACAACAA+TGG | - | chr4.4:29777815-29777834 | None:intergenic | 40.0% | |
| ATAGTTCGAACAGCAAGTTC+TGG | - | chr4.4:29779620-29779639 | None:intergenic | 40.0% | |
| ATATCAAGCTATGTCTGGCA+GGG | - | chr4.4:29779922-29779941 | None:intergenic | 40.0% | |
| ATTCTTTCTTTCGCCAAGCA+TGG | - | chr4.4:29778831-29778850 | None:intergenic | 40.0% | |
| ATTTGCATTGTTATAGGGGC+CGG | + | chr4.4:29778562-29778581 | MS.gene56458:intron | 40.0% | |
| CAAATTATGCCATGTGACAG+TGG | - | chr4.4:29777883-29777902 | None:intergenic | 40.0% | |
| CAAGGAAGATATCATGGTCT+GGG | + | chr4.4:29778901-29778920 | MS.gene56458:CDS | 40.0% | |
| CATGAATCATGATTAGGGCA+GGG | - | chr4.4:29778282-29778301 | None:intergenic | 40.0% | |
| CATTCAATACGCCAAAACGA+AGG | + | chr4.4:29780024-29780043 | MS.gene56458:CDS | 40.0% | |
| CATTTGTGGAAATCCTAGTG+GGG | + | chr4.4:29777998-29778017 | MS.gene56458:intron | 40.0% | |
| CGTTTCCTGATGATACTCAT+AGG | - | chr4.4:29777416-29777435 | None:intergenic | 40.0% | |
| CTCTTGTGTAAAACAGGGTA+AGG | + | chr4.4:29778180-29778199 | MS.gene56458:intron | 40.0% | |
| CTTTCCATCCTTGAGAAATC+CGG | - | chr4.4:29778597-29778616 | None:intergenic | 40.0% | |
| GCATTTGTGGAAATCCTAGT+GGG | + | chr4.4:29777997-29778016 | MS.gene56458:intron | 40.0% | |
| GGAACGACAACAGAAAGAAT+TGG | - | chr4.4:29779854-29779873 | None:intergenic | 40.0% | |
| GTGTAATATCCAAGGAAAGC+CGG | + | chr4.4:29779454-29779473 | MS.gene56458:CDS | 40.0% | |
| GTTGTTGTCATGTGACTGAA+AGG | + | chr4.4:29778131-29778150 | MS.gene56458:intron | 40.0% | |
| TAATCTTCCTGGAGTCATAG+TGG | + | chr4.4:29778853-29778872 | MS.gene56458:CDS | 40.0% | |
| TCATGAATCATGATTAGGGC+AGG | - | chr4.4:29778283-29778302 | None:intergenic | 40.0% | |
| TCATGCAGAAACAACAGAAG+AGG | + | chr4.4:29779988-29780007 | MS.gene56458:CDS | 40.0% | |
| TCCAATACACCAAATGGTGT+GGG | + | chr4.4:29778208-29778227 | MS.gene56458:intron | 40.0% | |
| TCCTGCACTGAATGTTGAAT+TGG | + | chr4.4:29778359-29778378 | MS.gene56458:intron | 40.0% | |
| TCGGAATATCAAGCTATGTC+TGG | - | chr4.4:29779927-29779946 | None:intergenic | 40.0% | |
| TGCATTTGTGGAAATCCTAG+TGG | + | chr4.4:29777996-29778015 | MS.gene56458:intron | 40.0% | |
| TGCGCATAATACAATGCTTC+CGG | - | chr4.4:29778732-29778751 | None:intergenic | 40.0% | |
| TGGTTCCTATGAGTATCATC+AGG | + | chr4.4:29777408-29777427 | MS.gene56458:CDS | 40.0% | |
| TTAGTGGCTAAATATAGGGC+AGG | + | chr4.4:29779824-29779843 | MS.gene56458:CDS | 40.0% | |
| ! | ATTTGTATCGGCAACTCTCA+TGG | + | chr4.4:29777954-29777973 | MS.gene56458:intron | 40.0% |
| ! | CTACGTTTTTGTGCGCTATT+GGG | + | chr4.4:29779151-29779170 | MS.gene56458:intron | 40.0% |
| ! | CTTACCCTGTTTTACACAAG+AGG | - | chr4.4:29778182-29778201 | None:intergenic | 40.0% |
| ! | TCAGTACTGGAATCAATCCT+CGG | - | chr4.4:29779946-29779965 | None:intergenic | 40.0% |
| ! | TCTACGTTTTTGTGCGCTAT+TGG | + | chr4.4:29779150-29779169 | MS.gene56458:intron | 40.0% |
| ! | TGGTAGGTTGAAAACCAAGA+AGG | + | chr4.4:29779311-29779330 | MS.gene56458:intron | 40.0% |
| ! | TGTTCGAAAAGGTTCTGATC+TGG | + | chr4.4:29778961-29778980 | MS.gene56458:CDS | 40.0% |
| !! | AAGGTATCGGTCTTAATCTC+GGG | - | chr4.4:29779875-29779894 | None:intergenic | 40.0% |
| !! | AGAACTTGCTGTTCGAACTA+TGG | + | chr4.4:29779619-29779638 | MS.gene56458:CDS | 40.0% |
| !! | AGGGAGTACTGCAAAATTAG+TGG | + | chr4.4:29779808-29779827 | MS.gene56458:CDS | 40.0% |
| !! | ATTCAAGGCATTGCCATTGT+TGG | + | chr4.4:29778487-29778506 | MS.gene56458:intron | 40.0% |
| !! | CTTCGTTTTGGCGTATTGAA+TGG | - | chr4.4:29780026-29780045 | None:intergenic | 40.0% |
| !! | GATCATTGACTCCAACATCT+GGG | - | chr4.4:29779492-29779511 | None:intergenic | 40.0% |
| !! | TGATCATTGACTCCAACATC+TGG | - | chr4.4:29779493-29779512 | None:intergenic | 40.0% |
| AAAGCCTGTCCAACTGAAAC+AGG | + | chr4.4:29778613-29778632 | MS.gene56458:CDS | 45.0% | |
| AAGCCTGTCCAACTGAAACA+GGG | + | chr4.4:29778614-29778633 | MS.gene56458:CDS | 45.0% | |
| AATGCCCTGAATGTCTCCAA+CGG | + | chr4.4:29778024-29778043 | MS.gene56458:CDS | 45.0% | |
| ACGAAGCTAGACTCTCCAAT+GGG | - | chr4.4:29779730-29779749 | None:intergenic | 45.0% | |
| ACGAAGGGTCTCTGCAATAA+CGG | + | chr4.4:29780040-29780059 | MS.gene56458:CDS | 45.0% | |
| ATCACTGCAGGACCAATCAA+AGG | - | chr4.4:29779894-29779913 | None:intergenic | 45.0% | |
| GATTCGAACCGGATTTCTCA+AGG | + | chr4.4:29778586-29778605 | MS.gene56458:CDS | 45.0% | |
| GCGCATAATACAATGCTTCC+GGG | - | chr4.4:29778731-29778750 | None:intergenic | 45.0% | |
| GCTCGTTTCAACTTCTCTCA+TGG | + | chr4.4:29777388-29777407 | MS.gene56458:CDS | 45.0% | |
| GTCCAATACACCAAATGGTG+TGG | + | chr4.4:29778207-29778226 | MS.gene56458:intron | 45.0% | |
| GTGGAAGTTCGCAAGTTGTT+GGG | + | chr4.4:29778983-29779002 | MS.gene56458:CDS | 45.0% | |
| TCATGTGACTGAAAGGTCAC+AGG | + | chr4.4:29778138-29778157 | MS.gene56458:intron | 45.0% | |
| TGATGTTGCCAATGCAGTTC+TGG | + | chr4.4:29779544-29779563 | MS.gene56458:CDS | 45.0% | |
| TGATTCATGAGGGGTAACCT+TGG | + | chr4.4:29778095-29778114 | MS.gene56458:intron | 45.0% | |
| TGTAGAAGCTTCTCCACCAT+TGG | - | chr4.4:29777352-29777371 | None:intergenic | 45.0% | |
| TGTGAAAACTCTGCCATGCT+TGG | + | chr4.4:29778815-29778834 | MS.gene56458:CDS | 45.0% | |
| TTTCCTGACCCTGTTTCAGT+TGG | - | chr4.4:29778625-29778644 | None:intergenic | 45.0% | |
| ! | AGAAATCCGGTTCGAATCTC+CGG | - | chr4.4:29778584-29778603 | None:intergenic | 45.0% |
| ! | AGACTCTCCAATGGGTTCAT+CGG | - | chr4.4:29779722-29779741 | None:intergenic | 45.0% |
| ! | ATTGATTCCAGTACTGAGCG+CGG | + | chr4.4:29779949-29779968 | MS.gene56458:CDS | 45.0% |
| ! | ATTGCAGAGACCCTTCGTTT+TGG | - | chr4.4:29780038-29780057 | None:intergenic | 45.0% |
| ! | GCAGGACCAATCAAAGGTAT+CGG | - | chr4.4:29779888-29779907 | None:intergenic | 45.0% |
| ! | GTGCACACGATCTTCGTTTT+GGG | - | chr4.4:29777304-29777323 | None:intergenic | 45.0% |
| ! | TCGAAAAGGTTCTGATCTGG+TGG | + | chr4.4:29778964-29778983 | MS.gene56458:CDS | 45.0% |
| ! | TTACACAAGAGGCTGTTTCC+AGG | - | chr4.4:29778171-29778190 | None:intergenic | 45.0% |
| !! | GCTGAGAGTACCATCAACTA+TGG | + | chr4.4:29779659-29779678 | MS.gene56458:CDS | 45.0% |
| !! | TCCCACACCATTTGGTGTAT+TGG | - | chr4.4:29778212-29778231 | None:intergenic | 45.0% |
| AACATCAGTAGCTTCCGCTC+TGG | - | chr4.4:29779531-29779550 | None:intergenic | 50.0% | |
| AACGAAGATCGTGTGCACGT+TGG | + | chr4.4:29777306-29777325 | MS.gene56458:CDS | 50.0% | |
| AAGGTCACAGGTTCAAGTCC+TGG | + | chr4.4:29778150-29778169 | MS.gene56458:intron | 50.0% | |
| ACGAAGATCGTGTGCACGTT+GGG | + | chr4.4:29777307-29777326 | MS.gene56458:CDS | 50.0% | |
| ATCCCCGTTGGAGACATTCA+GGG | - | chr4.4:29778031-29778050 | None:intergenic | 50.0% | |
| ATCGAGGTCTGTTCCAATGG+TGG | + | chr4.4:29777336-29777355 | MS.gene56458:CDS | 50.0% | |
| ATCTGGGTTGCAGTGACAAC+CGG | - | chr4.4:29779476-29779495 | None:intergenic | 50.0% | |
| ATGCCCTGAATGTCTCCAAC+GGG | + | chr4.4:29778025-29778044 | MS.gene56458:CDS | 50.0% | |
| ATTGGAACAGACCTCGATGC+AGG | - | chr4.4:29777334-29777353 | None:intergenic | 50.0% | |
| CAACTTTACCAGTTGCGCCA+AGG | - | chr4.4:29778115-29778134 | None:intergenic | 50.0% | |
| CACTTCACAGATATCCCCGT+TGG | - | chr4.4:29778043-29778062 | None:intergenic | 50.0% | |
| CATGACAGCGCAGAGAATAC+CGG | - | chr4.4:29777470-29777489 | None:intergenic | 50.0% | |
| CGAACCGGATTTCTCAAGGA+TGG | + | chr4.4:29778590-29778609 | MS.gene56458:CDS | 50.0% | |
| CGAAGGGTCTCTGCAATAAC+GGG | + | chr4.4:29780041-29780060 | MS.gene56458:CDS | 50.0% | |
| CGCTGTCATGCTTGACACTA+AGG | + | chr4.4:29777480-29777499 | MS.gene56458:intron | 50.0% | |
| CTTAGTGGTGAAACTGCTGC+TGG | + | chr4.4:29779587-29779606 | MS.gene56458:CDS | 50.0% | |
| GAAGGGTCTCTGCAATAACG+GGG | + | chr4.4:29780042-29780061 | MS.gene56458:CDS | 50.0% | |
| GACGAAGCTAGACTCTCCAA+TGG | - | chr4.4:29779731-29779750 | None:intergenic | 50.0% | |
| GATGCATTTATGGTGGCACG+TGG | + | chr4.4:29779368-29779387 | MS.gene56458:CDS | 50.0% | |
| GCTGCGTCCAATACACCAAA+TGG | + | chr4.4:29778202-29778221 | MS.gene56458:intron | 50.0% | |
| GGTGGAAGTTCGCAAGTTGT+TGG | + | chr4.4:29778982-29779001 | MS.gene56458:CDS | 50.0% | |
| GTGGAGAAGCTTCTACAAGC+AGG | + | chr4.4:29777355-29777374 | MS.gene56458:CDS | 50.0% | |
| TATCCCCGTTGGAGACATTC+AGG | - | chr4.4:29778032-29778051 | None:intergenic | 50.0% | |
| TGACCCTGTTTCAGTTGGAC+AGG | - | chr4.4:29778620-29778639 | None:intergenic | 50.0% | |
| TGCATCGAGGTCTGTTCCAA+TGG | + | chr4.4:29777333-29777352 | MS.gene56458:CDS | 50.0% | |
| TGTCACTGCAACCCAGATGT+TGG | + | chr4.4:29779478-29779497 | MS.gene56458:CDS | 50.0% | |
| TGTCCAACTGAAACAGGGTC+AGG | + | chr4.4:29778619-29778638 | MS.gene56458:CDS | 50.0% | |
| TGTGCCATCCAGAACTGCAT+TGG | - | chr4.4:29779555-29779574 | None:intergenic | 50.0% | |
| TTGGCTCATGATGTGAAGCC+CGG | + | chr4.4:29778710-29778729 | MS.gene56458:CDS | 50.0% | |
| ! | CAATAACGGGGATTCTGTGG+TGG | + | chr4.4:29780054-29780073 | MS.gene56458:CDS | 50.0% |
| ! | CGTGCACACGATCTTCGTTT+TGG | - | chr4.4:29777305-29777324 | None:intergenic | 50.0% |
| ! | CTGCAATAACGGGGATTCTG+TGG | + | chr4.4:29780051-29780070 | MS.gene56458:CDS | 50.0% |
| ! | GGTGCTATACCACTGTCACA+TGG | + | chr4.4:29777871-29777890 | MS.gene56458:intron | 50.0% |
| ! | TCCAATGGGTTCATCGGTAC+TGG | - | chr4.4:29779716-29779735 | None:intergenic | 50.0% |
| ! | TGATTGGTCCTGCAGTGATG+AGG | + | chr4.4:29779895-29779914 | MS.gene56458:CDS | 50.0% |
| ! | TTGATTCCAGTACTGAGCGC+GGG | + | chr4.4:29779950-29779969 | MS.gene56458:CDS | 50.0% |
| !! | ACCAGTACCGATGAACCCAT+TGG | + | chr4.4:29779712-29779731 | MS.gene56458:CDS | 50.0% |
| !! | GTTGCCAATGCAGTTCTGGA+TGG | + | chr4.4:29779548-29779567 | MS.gene56458:CDS | 50.0% |
| ATCACCTAGGCCAACCAGAG+CGG | + | chr4.4:29779514-29779533 | MS.gene56458:CDS | 55.0% | |
| ATGATTAGGGCAGGGCAACC+CGG | - | chr4.4:29778274-29778293 | None:intergenic | 55.0% | |
| GGGAGATCCACTATGACTCC+AGG | - | chr4.4:29778863-29778882 | None:intergenic | 55.0% | |
| TCAGTAGCTTCCGCTCTGGT+TGG | - | chr4.4:29779527-29779546 | None:intergenic | 55.0% | |
| TGCCCTGAATGTCTCCAACG+GGG | + | chr4.4:29778026-29778045 | MS.gene56458:CDS | 55.0% | |
| ! | CAGTGACAACCGGCTTTCCT+TGG | - | chr4.4:29779466-29779485 | None:intergenic | 55.0% |
| AATGGTGTGGGACCCCTTCC+CGG | + | chr4.4:29778220-29778239 | MS.gene56458:intron | 60.0% | |
| ACTGGAGCTCCCGCATATGC+AGG | - | chr4.4:29778248-29778267 | None:intergenic | 60.0% | |
| AGGGGTAACCTTGGCGCAAC+TGG | + | chr4.4:29778104-29778123 | MS.gene56458:intron | 60.0% | |
| CATATGCAGGGTCCGGGAAG+GGG | - | chr4.4:29778235-29778254 | None:intergenic | 60.0% | |
| CTGGAGCTCCCGCATATGCA+GGG | - | chr4.4:29778247-29778266 | None:intergenic | 60.0% | |
| CTTCCCGGACCCTGCATATG+CGG | + | chr4.4:29778235-29778254 | MS.gene56458:intron | 60.0% | |
| GCATATGCAGGGTCCGGGAA+GGG | - | chr4.4:29778236-29778255 | None:intergenic | 60.0% | |
| GGAAGGGGTCCCACACCATT+TGG | - | chr4.4:29778220-29778239 | None:intergenic | 60.0% | |
| TAGGGGCCGGAGATTCGAAC+CGG | + | chr4.4:29778575-29778594 | MS.gene56458:intron | 60.0% | |
| TTCCCGGACCCTGCATATGC+GGG | + | chr4.4:29778236-29778255 | MS.gene56458:intron | 60.0% | |
| ! | GTGGTGGCTCTGCATCGTGT+GGG | + | chr4.4:29780070-29780089 | MS.gene56458:CDS | 60.0% |
| ! | TCAGGGCATTCGTCCCCACT+AGG | - | chr4.4:29778014-29778033 | None:intergenic | 60.0% |
| ! | TGTGGTGGCTCTGCATCGTG+TGG | + | chr4.4:29780069-29780088 | MS.gene56458:CDS | 60.0% |
| ATGCGGGAGCTCCAGTGCAC+CGG | + | chr4.4:29778252-29778271 | MS.gene56458:intron | 65.0% | |
| ATGGTGGCACGTGGCGACCT+TGG | + | chr4.4:29779377-29779396 | MS.gene56458:CDS | 65.0% | |
| CGCATATGCAGGGTCCGGGA+AGG | - | chr4.4:29778237-29778256 | None:intergenic | 65.0% | |
| CTCCCGCATATGCAGGGTCC+GGG | - | chr4.4:29778241-29778260 | None:intergenic | 65.0% | |
| GCACGTTGGGACCTGCATCG+AGG | + | chr4.4:29777320-29777339 | MS.gene56458:CDS | 65.0% | |
| GCAGAACCCGCGCTCAGTAC+TGG | - | chr4.4:29779959-29779978 | None:intergenic | 65.0% | |
| GCTCCCGCATATGCAGGGTC+CGG | - | chr4.4:29778242-29778261 | None:intergenic | 65.0% | |
| GGCACGTGGCGACCTTGGAA+TGG | + | chr4.4:29779382-29779401 | MS.gene56458:CDS | 65.0% | |
| GGCAGGGACCTCATCACTGC+AGG | - | chr4.4:29779906-29779925 | None:intergenic | 65.0% | |
| !! | GCTTCCGCTCTGGTTGGCCT+AGG | - | chr4.4:29779521-29779540 | None:intergenic | 65.0% |
| TGCGGGAGCTCCAGTGCACC+GGG | + | chr4.4:29778253-29778272 | MS.gene56458:intron | 70.0% | |
| GGCAGGGCAACCCGGTGCAC+TGG | - | chr4.4:29778266-29778285 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 29777277 | 29780129 | 29777277 | ID=MS.gene56458 |
| chr4.4 | mRNA | 29777277 | 29780129 | 29777277 | ID=MS.gene56458.t1;Parent=MS.gene56458 |
| chr4.4 | exon | 29777277 | 29777469 | 29777277 | ID=MS.gene56458.t1.exon1;Parent=MS.gene56458.t1 |
| chr4.4 | CDS | 29777277 | 29777469 | 29777277 | ID=cds.MS.gene56458.t1;Parent=MS.gene56458.t1 |
| chr4.4 | exon | 29778016 | 29778059 | 29778016 | ID=MS.gene56458.t1.exon2;Parent=MS.gene56458.t1 |
| chr4.4 | CDS | 29778016 | 29778059 | 29778016 | ID=cds.MS.gene56458.t1;Parent=MS.gene56458.t1 |
| chr4.4 | exon | 29778578 | 29779039 | 29778578 | ID=MS.gene56458.t1.exon3;Parent=MS.gene56458.t1 |
| chr4.4 | CDS | 29778578 | 29779039 | 29778578 | ID=cds.MS.gene56458.t1;Parent=MS.gene56458.t1 |
| chr4.4 | exon | 29779317 | 29780129 | 29779317 | ID=MS.gene56458.t1.exon4;Parent=MS.gene56458.t1 |
| chr4.4 | CDS | 29779317 | 29780129 | 29779317 | ID=cds.MS.gene56458.t1;Parent=MS.gene56458.t1 |
| Gene Sequence |
| Protein sequence |
