Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006868.t1 | XP_003607828.2 | 96 | 500 | 16 | 1 | 4 | 503 | 2 | 497 | 2.70E-268 | 934.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006868.t1 | Q42954 | 85.1 | 497 | 70 | 1 | 7 | 503 | 16 | 508 | 1.9e-241 | 836.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006868.t1 | G7JHK8 | 96.0 | 500 | 16 | 1 | 4 | 503 | 2 | 497 | 2.0e-268 | 934.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006868.t1 | MTR_4g083340 | 96.000 | 500 | 16 | 1 | 4 | 503 | 2 | 497 | 0.0 | 981 |
| MS.gene006868.t1 | MTR_7g100760 | 89.608 | 510 | 36 | 3 | 1 | 503 | 1 | 500 | 0.0 | 936 |
| MS.gene006868.t1 | MTR_4g083330 | 82.937 | 504 | 54 | 4 | 1 | 503 | 1 | 473 | 0.0 | 814 |
| MS.gene006868.t1 | MTR_6g004020 | 75.556 | 495 | 117 | 1 | 9 | 503 | 20 | 510 | 0.0 | 788 |
| MS.gene006868.t1 | MTR_1g061630 | 41.304 | 506 | 277 | 9 | 11 | 503 | 30 | 528 | 8.08e-119 | 359 |
| MS.gene006868.t1 | MTR_7g103420 | 40.954 | 503 | 281 | 9 | 11 | 503 | 30 | 526 | 8.66e-119 | 359 |
| MS.gene006868.t1 | MTR_1g091040 | 39.960 | 503 | 285 | 8 | 11 | 503 | 30 | 525 | 1.35e-118 | 358 |
| MS.gene006868.t1 | MTR_1g061630 | 41.700 | 506 | 259 | 10 | 11 | 503 | 30 | 512 | 5.90e-118 | 357 |
| MS.gene006868.t1 | MTR_7g103420 | 40.154 | 518 | 279 | 11 | 11 | 503 | 30 | 541 | 1.81e-116 | 354 |
| MS.gene006868.t1 | MTR_7g103420 | 40.235 | 425 | 243 | 7 | 89 | 503 | 14 | 437 | 5.51e-98 | 303 |
| MS.gene006868.t1 | MTR_1g091040 | 41.953 | 379 | 212 | 6 | 128 | 500 | 13 | 389 | 6.75e-94 | 291 |
| MS.gene006868.t1 | MTR_5g014140 | 34.917 | 484 | 278 | 11 | 5 | 485 | 73 | 522 | 2.13e-84 | 271 |
| MS.gene006868.t1 | MTR_6g034195 | 34.908 | 487 | 268 | 12 | 8 | 485 | 104 | 550 | 5.33e-79 | 258 |
| MS.gene006868.t1 | MTR_1g099360 | 34.979 | 486 | 269 | 12 | 8 | 485 | 102 | 548 | 4.41e-78 | 255 |
| MS.gene006868.t1 | MTR_5g014140 | 39.645 | 338 | 186 | 7 | 5 | 336 | 73 | 398 | 6.04e-74 | 240 |
| MS.gene006868.t1 | MTR_1g076540 | 31.412 | 503 | 286 | 12 | 10 | 488 | 90 | 557 | 1.25e-67 | 228 |
| MS.gene006868.t1 | MTR_1g105965 | 31.515 | 495 | 297 | 12 | 10 | 491 | 91 | 556 | 7.06e-65 | 220 |
| MS.gene006868.t1 | MTR_1g105965 | 34.177 | 316 | 190 | 8 | 10 | 316 | 91 | 397 | 2.01e-47 | 169 |
| MS.gene006868.t1 | MTR_1g105965 | 29.204 | 226 | 142 | 8 | 10 | 226 | 91 | 307 | 3.10e-17 | 82.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006868.t1 | AT5G56350 | 85.800 | 500 | 67 | 1 | 4 | 503 | 3 | 498 | 0.0 | 880 |
| MS.gene006868.t1 | AT4G26390 | 81.325 | 498 | 89 | 1 | 6 | 503 | 4 | 497 | 0.0 | 848 |
| MS.gene006868.t1 | AT5G63680 | 76.056 | 497 | 115 | 1 | 7 | 503 | 18 | 510 | 0.0 | 792 |
| MS.gene006868.t1 | AT5G63680 | 76.056 | 497 | 115 | 1 | 7 | 503 | 18 | 510 | 0.0 | 792 |
| MS.gene006868.t1 | AT5G63680 | 76.056 | 497 | 115 | 1 | 7 | 503 | 18 | 510 | 0.0 | 792 |
| MS.gene006868.t1 | AT5G08570 | 75.354 | 495 | 118 | 1 | 9 | 503 | 20 | 510 | 0.0 | 787 |
| MS.gene006868.t1 | AT5G08570 | 75.354 | 495 | 118 | 1 | 9 | 503 | 20 | 510 | 0.0 | 787 |
| MS.gene006868.t1 | AT5G08570 | 75.354 | 495 | 118 | 1 | 9 | 503 | 20 | 510 | 0.0 | 787 |
| MS.gene006868.t1 | AT3G04050 | 70.200 | 500 | 141 | 4 | 8 | 503 | 15 | 510 | 0.0 | 717 |
| MS.gene006868.t1 | AT3G55650 | 69.400 | 500 | 145 | 4 | 8 | 503 | 15 | 510 | 0.0 | 703 |
| MS.gene006868.t1 | AT3G25960 | 69.679 | 498 | 134 | 5 | 8 | 503 | 15 | 497 | 0.0 | 695 |
| MS.gene006868.t1 | AT3G55810 | 65.613 | 506 | 136 | 6 | 8 | 503 | 15 | 492 | 0.0 | 650 |
| MS.gene006868.t1 | AT3G52990 | 42.346 | 503 | 274 | 9 | 11 | 503 | 30 | 526 | 1.14e-123 | 372 |
| MS.gene006868.t1 | AT2G36580 | 41.153 | 503 | 280 | 7 | 11 | 503 | 30 | 526 | 1.29e-120 | 364 |
| MS.gene006868.t1 | AT3G52990 | 41.336 | 479 | 265 | 9 | 35 | 503 | 1 | 473 | 2.35e-114 | 346 |
| MS.gene006868.t1 | AT5G52920 | 38.142 | 409 | 225 | 9 | 8 | 408 | 109 | 497 | 1.29e-77 | 254 |
| MS.gene006868.t1 | AT1G32440 | 37.198 | 414 | 239 | 8 | 6 | 415 | 96 | 492 | 9.03e-77 | 252 |
| MS.gene006868.t1 | AT3G22960 | 31.124 | 498 | 292 | 12 | 10 | 488 | 118 | 583 | 3.59e-68 | 229 |
| MS.gene006868.t1 | AT3G49160 | 32.129 | 249 | 146 | 8 | 94 | 325 | 437 | 679 | 1.94e-21 | 98.6 |
| MS.gene006868.t1 | AT3G49160 | 32.129 | 249 | 146 | 8 | 94 | 325 | 349 | 591 | 2.11e-21 | 98.2 |
Find 129 sgRNAs with CRISPR-Local
Find 218 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCAAATTCAGATGCATTTA+TGG | 0.143820 | 4.4:+29644311 | MS.gene006868:CDS |
| CAAAATTTGCAACTCCTTCT+TGG | 0.173017 | 4.4:-29644278 | None:intergenic |
| CGTGCACACGATCTTCGTTT+TGG | 0.253113 | 4.4:-29642133 | None:intergenic |
| CAAAATTAGTGGCTAAATAT+AGG | 0.259428 | 4.4:+29644772 | MS.gene006868:CDS |
| AGCTAAAGCATCACTTATAT+TGG | 0.277757 | 4.4:+29644725 | MS.gene006868:CDS |
| TGACATGAGAAGTATGTTCT+TGG | 0.306502 | 4.4:-29643967 | None:intergenic |
| GCAATCATGTCAATATTATT+AGG | 0.308623 | 4.4:-29643882 | None:intergenic |
| TGATAAAACTTTAAATGATA+TGG | 0.309913 | 4.4:-29643712 | None:intergenic |
| TCAACTGACTATGACATAAA+AGG | 0.310805 | 4.4:+29643606 | MS.gene006868:CDS |
| TGATGTTGCCAATGCAGTTC+TGG | 0.311413 | 4.4:+29644497 | MS.gene006868:CDS |
| TATCCCCGTTGGAGACATTC+AGG | 0.313862 | 4.4:-29642861 | None:intergenic |
| ACTATGGAGATGTATTTAAA+AGG | 0.323244 | 4.4:+29644628 | MS.gene006868:CDS |
| TGCGCATAATACAATGCTTC+CGG | 0.336489 | 4.4:-29643682 | None:intergenic |
| AGAAAGAATGTTAATCTTCC+TGG | 0.353613 | 4.4:+29643795 | MS.gene006868:CDS |
| TGATCATTGACTCCAACATC+TGG | 0.357864 | 4.4:-29644443 | None:intergenic |
| ACGAAGATCGTGTGCACGTT+GGG | 0.359686 | 4.4:+29642138 | MS.gene006868:CDS |
| AAAGCCTGTCCAACTGAAAC+AGG | 0.359964 | 4.4:+29643566 | MS.gene006868:CDS |
| ATTGCAGAGACCCTTCGTTT+TGG | 0.367005 | 4.4:-29644988 | None:intergenic |
| AGAACTTGCTGTTCGAACTA+TGG | 0.369701 | 4.4:+29644572 | MS.gene006868:CDS |
| AGCTTCGTCTGCAGTTAAAA+TGG | 0.375669 | 4.4:+29644695 | MS.gene006868:CDS |
| CGAAGGGTCTCTGCAATAAC+GGG | 0.376842 | 4.4:+29644994 | MS.gene006868:CDS |
| TGTCTTTCTCAGTTAATGTT+GGG | 0.379208 | 4.4:-29643833 | None:intergenic |
| GCTAGAAATATCTTCTCTAT+TGG | 0.379339 | 4.4:-29644363 | None:intergenic |
| AAATACATCTCCATAGTTGA+TGG | 0.388097 | 4.4:-29644622 | None:intergenic |
| TATGTCATAGTCAGTTGAAA+TGG | 0.395169 | 4.4:-29643601 | None:intergenic |
| AAAATTAGTGGCTAAATATA+GGG | 0.399080 | 4.4:+29644773 | MS.gene006868:CDS |
| CTTTCCATCCTTGAGAAATC+CGG | 0.403259 | 4.4:-29643547 | None:intergenic |
| AGAAATCCGGTTCGAATCTC+CGG | 0.409460 | 4.4:-29643534 | None:intergenic |
| TGACCCTGTTTCAGTTGGAC+AGG | 0.413797 | 4.4:-29643570 | None:intergenic |
| GCAGAACCCGCGCTCAGTAC+TGG | 0.426796 | 4.4:-29644909 | None:intergenic |
| AGATGTATTTAAAAGGATAA+TGG | 0.428807 | 4.4:+29644635 | MS.gene006868:CDS |
| ATCTGGGTTGCAGTGACAAC+CGG | 0.431464 | 4.4:-29644426 | None:intergenic |
| TTGTCTTTCTCAGTTAATGT+TGG | 0.432179 | 4.4:-29643834 | None:intergenic |
| ATGCCCTGAATGTCTCCAAC+GGG | 0.434807 | 4.4:+29642857 | MS.gene006868:CDS |
| GCGCATAATACAATGCTTCC+GGG | 0.435708 | 4.4:-29643681 | None:intergenic |
| TCCAATGGGTTCATCGGTAC+TGG | 0.437158 | 4.4:-29644666 | None:intergenic |
| GCTGAGAGTACCATCAACTA+TGG | 0.439742 | 4.4:+29644612 | MS.gene006868:CDS |
| TGTTCGAAAAGGTTCTGATC+TGG | 0.444704 | 4.4:+29643914 | MS.gene006868:CDS |
| CAGTGACAACCGGCTTTCCT+TGG | 0.445051 | 4.4:-29644416 | None:intergenic |
| GGAACGACAACAGAAAGAAT+TGG | 0.446886 | 4.4:-29644804 | None:intergenic |
| GTGGAAGTTCGCAAGTTGTT+GGG | 0.453796 | 4.4:+29643936 | MS.gene006868:CDS |
| ACAAGGAAGATATCATGGTC+TGG | 0.455969 | 4.4:+29643853 | MS.gene006868:CDS |
| CGTTTCCTGATGATACTCAT+AGG | 0.458132 | 4.4:-29642244 | None:intergenic |
| AAAGGTATCGGTCTTAATCT+CGG | 0.458769 | 4.4:-29644826 | None:intergenic |
| CAAGGAAGATATCATGGTCT+GGG | 0.464495 | 4.4:+29643854 | MS.gene006868:CDS |
| GCTTCCGCTCTGGTTGGCCT+AGG | 0.466606 | 4.4:-29644471 | None:intergenic |
| TTAAGACCGATACCTTTGAT+TGG | 0.467435 | 4.4:+29644832 | MS.gene006868:CDS |
| ATAGTTCGAACAGCAAGTTC+TGG | 0.469788 | 4.4:-29644570 | None:intergenic |
| TGTAGAAGCTTCTCCACCAT+TGG | 0.472652 | 4.4:-29642180 | None:intergenic |
| GCTCGTTTCAACTTCTCTCA+TGG | 0.486308 | 4.4:+29642219 | MS.gene006868:CDS |
| TCGGAATATCAAGCTATGTC+TGG | 0.489128 | 4.4:-29644877 | None:intergenic |
| AGGGAGTACTGCAAAATTAG+TGG | 0.490170 | 4.4:+29644761 | MS.gene006868:CDS |
| AAGGTATCGGTCTTAATCTC+GGG | 0.492658 | 4.4:-29644825 | None:intergenic |
| GGTGGAAGTTCGCAAGTTGT+TGG | 0.496316 | 4.4:+29643935 | MS.gene006868:CDS |
| CTATTGGAATTTCCATTCCA+AGG | 0.499540 | 4.4:-29644347 | None:intergenic |
| TTATCATGTGACAAAGAAGC+TGG | 0.501799 | 4.4:+29643729 | MS.gene006868:CDS |
| ACGAAGGGTCTCTGCAATAA+CGG | 0.502361 | 4.4:+29644993 | MS.gene006868:CDS |
| AAGTGATGCTTTAGCTGAGT+TGG | 0.504034 | 4.4:-29644718 | None:intergenic |
| TTTCCTGACCCTGTTTCAGT+TGG | 0.504054 | 4.4:-29643575 | None:intergenic |
| AATATCAAGCTATGTCTGGC+AGG | 0.504653 | 4.4:-29644873 | None:intergenic |
| ACAGATTGTGTCATGCTTAG+TGG | 0.511497 | 4.4:+29644525 | MS.gene006868:CDS |
| TTGGCTCATGATGTGAAGCC+CGG | 0.514070 | 4.4:+29643663 | MS.gene006868:CDS |
| TGCATCGAGGTCTGTTCCAA+TGG | 0.514723 | 4.4:+29642164 | MS.gene006868:CDS |
| GAAAGACAAGGAAGATATCA+TGG | 0.518423 | 4.4:+29643848 | MS.gene006868:CDS |
| ATGGTGGCACGTGGCGACCT+TGG | 0.519759 | 4.4:+29644330 | MS.gene006868:CDS |
| TAAATGCATCTGAATTTGCT+AGG | 0.522964 | 4.4:-29644308 | None:intergenic |
| TGGTTCCTATGAGTATCATC+AGG | 0.531881 | 4.4:+29642239 | MS.gene006868:CDS |
| GGCACGTGGCGACCTTGGAA+TGG | 0.535798 | 4.4:+29644335 | MS.gene006868:CDS |
| GGCAGGGACCTCATCACTGC+AGG | 0.536997 | 4.4:-29644856 | None:intergenic |
| TGTGGTGGCTCTGCATCGTG+TGG | 0.538502 | 4.4:+29645022 | MS.gene006868:CDS |
| TGTGAAAACTCTGCCATGCT+TGG | 0.539390 | 4.4:+29643768 | MS.gene006868:CDS |
| TAGGGGCCGGAGATTCGAAC+CGG | 0.540153 | 4.4:+29643528 | MS.gene006868:intron |
| CTTAGTGGTGAAACTGCTGC+TGG | 0.547208 | 4.4:+29644540 | MS.gene006868:CDS |
| TCAGTAGCTTCCGCTCTGGT+TGG | 0.547855 | 4.4:-29644477 | None:intergenic |
| GTGTAATATCCAAGGAAAGC+CGG | 0.548048 | 4.4:+29644407 | MS.gene006868:CDS |
| GATCATTGACTCCAACATCT+GGG | 0.548144 | 4.4:-29644442 | None:intergenic |
| AACATCAGTAGCTTCCGCTC+TGG | 0.555100 | 4.4:-29644481 | None:intergenic |
| TGTCCAACTGAAACAGGGTC+AGG | 0.555529 | 4.4:+29643572 | MS.gene006868:CDS |
| GATTCGAACCGGATTTCTCA+AGG | 0.555877 | 4.4:+29643539 | MS.gene006868:CDS |
| TAATCTTCCTGGAGTCATAG+TGG | 0.556349 | 4.4:+29643806 | MS.gene006868:CDS |
| CGAACCGGATTTCTCAAGGA+TGG | 0.557776 | 4.4:+29643543 | MS.gene006868:CDS |
| GGGAGATCCACTATGACTCC+AGG | 0.558159 | 4.4:-29643813 | None:intergenic |
| AGACTCTCCAATGGGTTCAT+CGG | 0.562346 | 4.4:-29644672 | None:intergenic |
| TGTGCCATCCAGAACTGCAT+TGG | 0.563561 | 4.4:-29644505 | None:intergenic |
| CACTTCACAGATATCCCCGT+TGG | 0.564138 | 4.4:-29642872 | None:intergenic |
| AGAACCGCTATGCAAAATAC+CGG | 0.570939 | 4.4:+29642279 | MS.gene006868:CDS |
| ATTCTTTCTTTCGCCAAGCA+TGG | 0.572600 | 4.4:-29643781 | None:intergenic |
| ATTGGAACAGACCTCGATGC+AGG | 0.573891 | 4.4:-29642162 | None:intergenic |
| GTGGAGAAGCTTCTACAAGC+AGG | 0.573930 | 4.4:+29642186 | MS.gene006868:CDS |
| CATTCAATACGCCAAAACGA+AGG | 0.574255 | 4.4:+29644977 | MS.gene006868:CDS |
| ATTCAATACGCCAAAACGAA+GGG | 0.574735 | 4.4:+29644978 | MS.gene006868:CDS |
| TTGATTCCAGTACTGAGCGC+GGG | 0.574942 | 4.4:+29644903 | MS.gene006868:CDS |
| GAACATACTTCTCATGTCAA+AGG | 0.576824 | 4.4:+29643971 | MS.gene006868:CDS |
| ACCAGTACCGATGAACCCAT+TGG | 0.577303 | 4.4:+29644665 | MS.gene006868:CDS |
| ACGAAGCTAGACTCTCCAAT+GGG | 0.577340 | 4.4:-29644680 | None:intergenic |
| TTAGTGGCTAAATATAGGGC+AGG | 0.578508 | 4.4:+29644777 | MS.gene006868:CDS |
| CTGCAATAACGGGGATTCTG+TGG | 0.578914 | 4.4:+29645004 | MS.gene006868:CDS |
| TGTCACTGCAACCCAGATGT+TGG | 0.580493 | 4.4:+29644431 | MS.gene006868:CDS |
| ATCCCCGTTGGAGACATTCA+GGG | 0.580568 | 4.4:-29642860 | None:intergenic |
| TCGAAAAGGTTCTGATCTGG+TGG | 0.582142 | 4.4:+29643917 | MS.gene006868:CDS |
| GCAGGACCAATCAAAGGTAT+CGG | 0.584899 | 4.4:-29644838 | None:intergenic |
| ATTTATAAGTGTAATATCCA+AGG | 0.586611 | 4.4:+29644399 | MS.gene006868:CDS |
| CAATAACGGGGATTCTGTGG+TGG | 0.592591 | 4.4:+29645007 | MS.gene006868:CDS |
| AGCATTGTATTATGCGCAGA+TGG | 0.594225 | 4.4:+29643687 | MS.gene006868:CDS |
| AACGAAGATCGTGTGCACGT+TGG | 0.594667 | 4.4:+29642137 | MS.gene006868:CDS |
| GTGGTGGCTCTGCATCGTGT+GGG | 0.595088 | 4.4:+29645023 | MS.gene006868:CDS |
| ATCACTGCAGGACCAATCAA+AGG | 0.596790 | 4.4:-29644844 | None:intergenic |
| TCATGCAGAAACAACAGAAG+AGG | 0.601211 | 4.4:+29644941 | MS.gene006868:CDS |
| TGGTAGGTTGAAAACCAAGA+AGG | 0.603437 | 4.4:+29644264 | MS.gene006868:intron |
| TCAGTACTGGAATCAATCCT+CGG | 0.604595 | 4.4:-29644896 | None:intergenic |
| TGATTGGTCCTGCAGTGATG+AGG | 0.612325 | 4.4:+29644848 | MS.gene006868:CDS |
| AGACATAGCTTGATATTCCG+AGG | 0.613725 | 4.4:+29644879 | MS.gene006868:CDS |
| ATATCAAGCTATGTCTGGCA+GGG | 0.616261 | 4.4:-29644872 | None:intergenic |
| AATGCCCTGAATGTCTCCAA+CGG | 0.619635 | 4.4:+29642856 | MS.gene006868:CDS |
| GACGAAGCTAGACTCTCCAA+TGG | 0.625022 | 4.4:-29644681 | None:intergenic |
| ATCGAGGTCTGTTCCAATGG+TGG | 0.626260 | 4.4:+29642167 | MS.gene006868:CDS |
| GTTGCCAATGCAGTTCTGGA+TGG | 0.635150 | 4.4:+29644501 | MS.gene006868:CDS |
| AAATTCAGATGCATTTATGG+TGG | 0.635640 | 4.4:+29644314 | MS.gene006868:CDS |
| ATTGATTCCAGTACTGAGCG+CGG | 0.643875 | 4.4:+29644902 | MS.gene006868:CDS |
| AAGCCTGTCCAACTGAAACA+GGG | 0.645619 | 4.4:+29643567 | MS.gene006868:CDS |
| TTGATCCATAATGTCGACGA+TGG | 0.660084 | 4.4:+29642098 | None:intergenic |
| AAGGAAGATATCATGGTCTG+GGG | 0.677855 | 4.4:+29643855 | MS.gene006868:CDS |
| GATGCATTTATGGTGGCACG+TGG | 0.679278 | 4.4:+29644321 | MS.gene006868:CDS |
| ATCACCTAGGCCAACCAGAG+CGG | 0.699051 | 4.4:+29644467 | MS.gene006868:CDS |
| AGTCAATGATCAAATCACCT+AGG | 0.703441 | 4.4:+29644454 | MS.gene006868:CDS |
| AACATTAACTGAGAAAGACA+AGG | 0.707908 | 4.4:+29643836 | MS.gene006868:CDS |
| GCACGTTGGGACCTGCATCG+AGG | 0.708371 | 4.4:+29642151 | MS.gene006868:CDS |
| GAAGGGTCTCTGCAATAACG+GGG | 0.720462 | 4.4:+29644995 | MS.gene006868:CDS |
| TGCCCTGAATGTCTCCAACG+GGG | 0.738643 | 4.4:+29642858 | MS.gene006868:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATGTATATAAATTTGTAT+CGG | + | chr4.4:29642774-29642793 | MS.gene006868:intron | 10.0% |
| !! | TTTATTTACATATATAATGA+CGG | + | chr4.4:29642502-29642521 | MS.gene006868:intron | 10.0% |
| !! | TGATAAAACTTTAAATGATA+TGG | - | chr4.4:29643715-29643734 | None:intergenic | 15.0% |
| !! | AAAATTAGTGGCTAAATATA+GGG | + | chr4.4:29644773-29644792 | MS.gene006868:CDS | 20.0% |
| !! | AGATGTATTTAAAAGGATAA+TGG | + | chr4.4:29644635-29644654 | MS.gene006868:CDS | 20.0% |
| !! | ATTTATAAGTGTAATATCCA+AGG | + | chr4.4:29644399-29644418 | MS.gene006868:CDS | 20.0% |
| !! | CATAAGATAAAAGATAGATA+AGG | - | chr4.4:29643490-29643509 | None:intergenic | 20.0% |
| !! | GAAATAAAATCAGAAATCTA+CGG | - | chr4.4:29644006-29644025 | None:intergenic | 20.0% |
| !! | TATCTATTTGCATTGTTATA+GGG | + | chr4.4:29643510-29643529 | MS.gene006868:intron | 20.0% |
| !! | TATGTATAATATTGCATTTG+TGG | + | chr4.4:29642816-29642835 | MS.gene006868:intron | 20.0% |
| !! | TGAATTTAGTTACTTATTTC+TGG | + | chr4.4:29644209-29644228 | MS.gene006868:intron | 20.0% |
| !!! | GTCTCAATATATTTTTAAAC+CGG | - | chr4.4:29644045-29644064 | None:intergenic | 20.0% |
| !!! | TAAATGAGAGAGTAATTTTT+AGG | - | chr4.4:29642478-29642497 | None:intergenic | 20.0% |
| !!! | TTACTGATATTTGTTATCTA+TGG | + | chr4.4:29644179-29644198 | MS.gene006868:intron | 20.0% |
| ! | ACTATGGAGATGTATTTAAA+AGG | + | chr4.4:29644628-29644647 | MS.gene006868:CDS | 25.0% |
| ! | ATCTATTTGCATTGTTATAG+GGG | + | chr4.4:29643511-29643530 | MS.gene006868:intron | 25.0% |
| ! | ATGTATAATCATGATTCATG+AGG | + | chr4.4:29642916-29642935 | MS.gene006868:intron | 25.0% |
| ! | CAAAATTAGTGGCTAAATAT+AGG | + | chr4.4:29644772-29644791 | MS.gene006868:CDS | 25.0% |
| ! | GCAATCATGTCAATATTATT+AGG | - | chr4.4:29643885-29643904 | None:intergenic | 25.0% |
| ! | GGTATCATCTAACAAAATTT+GGG | + | chr4.4:29644125-29644144 | MS.gene006868:intron | 25.0% |
| ! | GTATCTATTTGCATTGTTAT+AGG | + | chr4.4:29643509-29643528 | MS.gene006868:intron | 25.0% |
| ! | TGTATAATCATGATTCATGA+GGG | + | chr4.4:29642917-29642936 | MS.gene006868:intron | 25.0% |
| ! | TTCATGAAAATGAAAAGTTC+CGG | + | chr4.4:29644023-29644042 | MS.gene006868:intron | 25.0% |
| ! | TTCTTCATGAATCATGATTA+GGG | - | chr4.4:29643119-29643138 | None:intergenic | 25.0% |
| ! | TTGTACTAATTAGTGTATTG+CGG | - | chr4.4:29642658-29642677 | None:intergenic | 25.0% |
| !!! | CTTATATTGGTTTTAACTAG+AGG | + | chr4.4:29644738-29644757 | MS.gene006868:CDS | 25.0% |
| AAATACATCTCCATAGTTGA+TGG | - | chr4.4:29644625-29644644 | None:intergenic | 30.0% | |
| AAATTCAGATGCATTTATGG+TGG | + | chr4.4:29644314-29644333 | MS.gene006868:CDS | 30.0% | |
| AACATTAACTGAGAAAGACA+AGG | + | chr4.4:29643836-29643855 | MS.gene006868:CDS | 30.0% | |
| AGAAAGAATGTTAATCTTCC+TGG | + | chr4.4:29643795-29643814 | MS.gene006868:CDS | 30.0% | |
| AGCAAATTCAGATGCATTTA+TGG | + | chr4.4:29644311-29644330 | MS.gene006868:CDS | 30.0% | |
| CAATTCATTAAGTCCAACAA+TGG | - | chr4.4:29643456-29643475 | None:intergenic | 30.0% | |
| CATGATACACACAAATTATC+AGG | - | chr4.4:29643267-29643286 | None:intergenic | 30.0% | |
| GCTAGAAATATCTTCTCTAT+TGG | - | chr4.4:29644366-29644385 | None:intergenic | 30.0% | |
| GGGTATCATCTAACAAAATT+TGG | + | chr4.4:29644124-29644143 | MS.gene006868:intron | 30.0% | |
| GTATAATCATGATTCATGAG+GGG | + | chr4.4:29642918-29642937 | MS.gene006868:intron | 30.0% | |
| GTTCTTCATGAATCATGATT+AGG | - | chr4.4:29643120-29643139 | None:intergenic | 30.0% | |
| TATGTCATAGTCAGTTGAAA+TGG | - | chr4.4:29643604-29643623 | None:intergenic | 30.0% | |
| TCAAATAATAGCGGCTATTA+TGG | + | chr4.4:29642585-29642604 | MS.gene006868:intron | 30.0% | |
| TCAACTGACTATGACATAAA+AGG | + | chr4.4:29643606-29643625 | MS.gene006868:CDS | 30.0% | |
| TCAGTGTTGTCAAATAATAG+CGG | + | chr4.4:29642576-29642595 | MS.gene006868:intron | 30.0% | |
| TGTCTTTCTCAGTTAATGTT+GGG | - | chr4.4:29643836-29643855 | None:intergenic | 30.0% | |
| TTACTTCAAATGTATGTGGT+AGG | + | chr4.4:29644248-29644267 | MS.gene006868:intron | 30.0% | |
| TTCTCAAATAGTGGCTATAA+CGG | + | chr4.4:29642682-29642701 | MS.gene006868:intron | 30.0% | |
| TTGTCTTTCTCAGTTAATGT+TGG | - | chr4.4:29643837-29643856 | None:intergenic | 30.0% | |
| ! | AGCTAAAGCATCACTTATAT+TGG | + | chr4.4:29644725-29644744 | MS.gene006868:CDS | 30.0% |
| ! | TAAATGCATCTGAATTTGCT+AGG | - | chr4.4:29644311-29644330 | None:intergenic | 30.0% |
| ! | TACAAAGTGTTCTCAAATAG+TGG | + | chr4.4:29642673-29642692 | MS.gene006868:intron | 30.0% |
| ! | TCTGTTACTTCAAATGTATG+TGG | + | chr4.4:29644244-29644263 | MS.gene006868:intron | 30.0% |
| !!! | ATATTGGTTTTAACTAGAGG+AGG | + | chr4.4:29644741-29644760 | MS.gene006868:CDS | 30.0% |
| !!! | TATTGGTTTTAACTAGAGGA+GGG | + | chr4.4:29644742-29644761 | MS.gene006868:CDS | 30.0% |
| AGTCAATGATCAAATCACCT+AGG | + | chr4.4:29644454-29644473 | MS.gene006868:CDS | 35.0% | |
| ATTCAATACGCCAAAACGAA+GGG | + | chr4.4:29644978-29644997 | MS.gene006868:CDS | 35.0% | |
| CAAAATTTGCAACTCCTTCT+TGG | - | chr4.4:29644281-29644300 | None:intergenic | 35.0% | |
| CATATCAATGTTGTCAATCG+CGG | - | chr4.4:29642754-29642773 | None:intergenic | 35.0% | |
| CTATTGGAATTTCCATTCCA+AGG | - | chr4.4:29644350-29644369 | None:intergenic | 35.0% | |
| CTGTATGAGCTACAAAAAGT+TGG | + | chr4.4:29643644-29643663 | MS.gene006868:CDS | 35.0% | |
| GAAAGACAAGGAAGATATCA+TGG | + | chr4.4:29643848-29643867 | MS.gene006868:CDS | 35.0% | |
| GAACATACTTCTCATGTCAA+AGG | + | chr4.4:29643971-29643990 | MS.gene006868:CDS | 35.0% | |
| GTTGAATTGGTGTGAATTTG+TGG | + | chr4.4:29643204-29643223 | MS.gene006868:intron | 35.0% | |
| GTTGTATGAGTGTGAATTCA+AGG | + | chr4.4:29643425-29643444 | MS.gene006868:intron | 35.0% | |
| TACTTCTCATGTCAAAGGTA+TGG | + | chr4.4:29643976-29643995 | MS.gene006868:intron | 35.0% | |
| TTAAGACCGATACCTTTGAT+TGG | + | chr4.4:29644832-29644851 | MS.gene006868:CDS | 35.0% | |
| TTATCATGTGACAAAGAAGC+TGG | + | chr4.4:29643729-29643748 | MS.gene006868:CDS | 35.0% | |
| ! | AATACCGGTATTTTGCATAG+CGG | - | chr4.4:29642286-29642305 | None:intergenic | 35.0% |
| ! | GCACTTTCTTTTGTTCGAAA+AGG | + | chr4.4:29643903-29643922 | MS.gene006868:CDS | 35.0% |
| ! | TGACATGAGAAGTATGTTCT+TGG | - | chr4.4:29643970-29643989 | None:intergenic | 35.0% |
| !! | AAAGGTATCGGTCTTAATCT+CGG | - | chr4.4:29644829-29644848 | None:intergenic | 35.0% |
| !! | ATTATGGTGTTGTAGTGCTA+CGG | + | chr4.4:29642601-29642620 | MS.gene006868:intron | 35.0% |
| AACAGCCTCTTGTGTAAAAC+AGG | + | chr4.4:29643006-29643025 | MS.gene006868:intron | 40.0% | |
| AAGGAAGATATCATGGTCTG+GGG | + | chr4.4:29643855-29643874 | MS.gene006868:CDS | 40.0% | |
| AAGTGATGCTTTAGCTGAGT+TGG | - | chr4.4:29644721-29644740 | None:intergenic | 40.0% | |
| AATATCAAGCTATGTCTGGC+AGG | - | chr4.4:29644876-29644895 | None:intergenic | 40.0% | |
| ACAAGGAAGATATCATGGTC+TGG | + | chr4.4:29643853-29643872 | MS.gene006868:CDS | 40.0% | |
| ACAGATTGTGTCATGCTTAG+TGG | + | chr4.4:29644525-29644544 | MS.gene006868:CDS | 40.0% | |
| ACAGCCTCTTGTGTAAAACA+GGG | + | chr4.4:29643007-29643026 | MS.gene006868:intron | 40.0% | |
| ACCAATTCAACATTCAGTGC+AGG | - | chr4.4:29643195-29643214 | None:intergenic | 40.0% | |
| AGAACCGCTATGCAAAATAC+CGG | + | chr4.4:29642279-29642298 | MS.gene006868:CDS | 40.0% | |
| AGACATAGCTTGATATTCCG+AGG | + | chr4.4:29644879-29644898 | MS.gene006868:CDS | 40.0% | |
| AGATGCAACAAGCATCTCTA+TGG | - | chr4.4:29644086-29644105 | None:intergenic | 40.0% | |
| AGCATTGTATTATGCGCAGA+TGG | + | chr4.4:29643687-29643706 | MS.gene006868:CDS | 40.0% | |
| AGCTTCGTCTGCAGTTAAAA+TGG | + | chr4.4:29644695-29644714 | MS.gene006868:CDS | 40.0% | |
| AGTGTATTGCGGAACAACAA+TGG | - | chr4.4:29642647-29642666 | None:intergenic | 40.0% | |
| ATAGTTCGAACAGCAAGTTC+TGG | - | chr4.4:29644573-29644592 | None:intergenic | 40.0% | |
| ATATCAAGCTATGTCTGGCA+GGG | - | chr4.4:29644875-29644894 | None:intergenic | 40.0% | |
| ATTCTTTCTTTCGCCAAGCA+TGG | - | chr4.4:29643784-29643803 | None:intergenic | 40.0% | |
| ATTTGCATTGTTATAGGGGC+CGG | + | chr4.4:29643515-29643534 | MS.gene006868:intron | 40.0% | |
| CAAGGAAGATATCATGGTCT+GGG | + | chr4.4:29643854-29643873 | MS.gene006868:CDS | 40.0% | |
| CATGAATCATGATTAGGGCA+GGG | - | chr4.4:29643114-29643133 | None:intergenic | 40.0% | |
| CATTCAATACGCCAAAACGA+AGG | + | chr4.4:29644977-29644996 | MS.gene006868:CDS | 40.0% | |
| CATTTGTGGAAATCCTAGTG+GGG | + | chr4.4:29642830-29642849 | MS.gene006868:intron | 40.0% | |
| CGTTTCCTGATGATACTCAT+AGG | - | chr4.4:29642247-29642266 | None:intergenic | 40.0% | |
| CTCTTGTGTAAAACAGGGTA+AGG | + | chr4.4:29643012-29643031 | MS.gene006868:intron | 40.0% | |
| CTTTCCATCCTTGAGAAATC+CGG | - | chr4.4:29643550-29643569 | None:intergenic | 40.0% | |
| GCATTTGTGGAAATCCTAGT+GGG | + | chr4.4:29642829-29642848 | MS.gene006868:intron | 40.0% | |
| GGAACGACAACAGAAAGAAT+TGG | - | chr4.4:29644807-29644826 | None:intergenic | 40.0% | |
| GTGTAATATCCAAGGAAAGC+CGG | + | chr4.4:29644407-29644426 | MS.gene006868:CDS | 40.0% | |
| GTTGTTGTCATGTGACTGAA+AGG | + | chr4.4:29642963-29642982 | MS.gene006868:intron | 40.0% | |
| TAATCTTCCTGGAGTCATAG+TGG | + | chr4.4:29643806-29643825 | MS.gene006868:CDS | 40.0% | |
| TCATGAATCATGATTAGGGC+AGG | - | chr4.4:29643115-29643134 | None:intergenic | 40.0% | |
| TCATGCAGAAACAACAGAAG+AGG | + | chr4.4:29644941-29644960 | MS.gene006868:CDS | 40.0% | |
| TCCAATACACCAAATGGTGT+GGG | + | chr4.4:29643040-29643059 | MS.gene006868:intron | 40.0% | |
| TCCTGCACTGAATGTTGAAT+TGG | + | chr4.4:29643191-29643210 | MS.gene006868:intron | 40.0% | |
| TCGGAATATCAAGCTATGTC+TGG | - | chr4.4:29644880-29644899 | None:intergenic | 40.0% | |
| TGCATTTGTGGAAATCCTAG+TGG | + | chr4.4:29642828-29642847 | MS.gene006868:intron | 40.0% | |
| TGCGCATAATACAATGCTTC+CGG | - | chr4.4:29643685-29643704 | None:intergenic | 40.0% | |
| TGGTTCCTATGAGTATCATC+AGG | + | chr4.4:29642239-29642258 | MS.gene006868:CDS | 40.0% | |
| TTAGTGGCTAAATATAGGGC+AGG | + | chr4.4:29644777-29644796 | MS.gene006868:CDS | 40.0% | |
| ! | ATTTGTATCGGCAACTCTCA+TGG | + | chr4.4:29642786-29642805 | MS.gene006868:intron | 40.0% |
| ! | CTACGTTTTTGTGCGCTATT+GGG | + | chr4.4:29644104-29644123 | MS.gene006868:intron | 40.0% |
| ! | CTTACCCTGTTTTACACAAG+AGG | - | chr4.4:29643014-29643033 | None:intergenic | 40.0% |
| ! | TCAGTACTGGAATCAATCCT+CGG | - | chr4.4:29644899-29644918 | None:intergenic | 40.0% |
| ! | TCTACGTTTTTGTGCGCTAT+TGG | + | chr4.4:29644103-29644122 | MS.gene006868:intron | 40.0% |
| ! | TGGTAGGTTGAAAACCAAGA+AGG | + | chr4.4:29644264-29644283 | MS.gene006868:intron | 40.0% |
| ! | TGTTCGAAAAGGTTCTGATC+TGG | + | chr4.4:29643914-29643933 | MS.gene006868:CDS | 40.0% |
| !! | AAGGTATCGGTCTTAATCTC+GGG | - | chr4.4:29644828-29644847 | None:intergenic | 40.0% |
| !! | AGAACTTGCTGTTCGAACTA+TGG | + | chr4.4:29644572-29644591 | MS.gene006868:CDS | 40.0% |
| !! | AGGGAGTACTGCAAAATTAG+TGG | + | chr4.4:29644761-29644780 | MS.gene006868:CDS | 40.0% |
| !! | ATTCAAGGCATTGCCATTGT+TGG | + | chr4.4:29643440-29643459 | MS.gene006868:intron | 40.0% |
| !! | CTTCGTTTTGGCGTATTGAA+TGG | - | chr4.4:29644979-29644998 | None:intergenic | 40.0% |
| !! | GATCATTGACTCCAACATCT+GGG | - | chr4.4:29644445-29644464 | None:intergenic | 40.0% |
| !! | TGATCATTGACTCCAACATC+TGG | - | chr4.4:29644446-29644465 | None:intergenic | 40.0% |
| AAAGCCTGTCCAACTGAAAC+AGG | + | chr4.4:29643566-29643585 | MS.gene006868:CDS | 45.0% | |
| AAGCCTGTCCAACTGAAACA+GGG | + | chr4.4:29643567-29643586 | MS.gene006868:CDS | 45.0% | |
| AATGCCCTGAATGTCTCCAA+CGG | + | chr4.4:29642856-29642875 | MS.gene006868:CDS | 45.0% | |
| ACGAAGCTAGACTCTCCAAT+GGG | - | chr4.4:29644683-29644702 | None:intergenic | 45.0% | |
| ACGAAGGGTCTCTGCAATAA+CGG | + | chr4.4:29644993-29645012 | MS.gene006868:CDS | 45.0% | |
| ATCACTGCAGGACCAATCAA+AGG | - | chr4.4:29644847-29644866 | None:intergenic | 45.0% | |
| GATTCGAACCGGATTTCTCA+AGG | + | chr4.4:29643539-29643558 | MS.gene006868:CDS | 45.0% | |
| GCGCATAATACAATGCTTCC+GGG | - | chr4.4:29643684-29643703 | None:intergenic | 45.0% | |
| GCTCGTTTCAACTTCTCTCA+TGG | + | chr4.4:29642219-29642238 | MS.gene006868:CDS | 45.0% | |
| GTCCAATACACCAAATGGTG+TGG | + | chr4.4:29643039-29643058 | MS.gene006868:intron | 45.0% | |
| GTGGAAGTTCGCAAGTTGTT+GGG | + | chr4.4:29643936-29643955 | MS.gene006868:CDS | 45.0% | |
| TCATGTGACTGAAAGGTCAC+AGG | + | chr4.4:29642970-29642989 | MS.gene006868:intron | 45.0% | |
| TGATGTTGCCAATGCAGTTC+TGG | + | chr4.4:29644497-29644516 | MS.gene006868:CDS | 45.0% | |
| TGATTCATGAGGGGTAACCT+TGG | + | chr4.4:29642927-29642946 | MS.gene006868:intron | 45.0% | |
| TGTAGAAGCTTCTCCACCAT+TGG | - | chr4.4:29642183-29642202 | None:intergenic | 45.0% | |
| TGTGAAAACTCTGCCATGCT+TGG | + | chr4.4:29643768-29643787 | MS.gene006868:CDS | 45.0% | |
| TTTCCTGACCCTGTTTCAGT+TGG | - | chr4.4:29643578-29643597 | None:intergenic | 45.0% | |
| ! | AGAAATCCGGTTCGAATCTC+CGG | - | chr4.4:29643537-29643556 | None:intergenic | 45.0% |
| ! | AGACTCTCCAATGGGTTCAT+CGG | - | chr4.4:29644675-29644694 | None:intergenic | 45.0% |
| ! | ATTGATTCCAGTACTGAGCG+CGG | + | chr4.4:29644902-29644921 | MS.gene006868:CDS | 45.0% |
| ! | ATTGCAGAGACCCTTCGTTT+TGG | - | chr4.4:29644991-29645010 | None:intergenic | 45.0% |
| ! | GCAGGACCAATCAAAGGTAT+CGG | - | chr4.4:29644841-29644860 | None:intergenic | 45.0% |
| ! | GTGCACACGATCTTCGTTTT+GGG | - | chr4.4:29642135-29642154 | None:intergenic | 45.0% |
| ! | TCGAAAAGGTTCTGATCTGG+TGG | + | chr4.4:29643917-29643936 | MS.gene006868:CDS | 45.0% |
| ! | TTACACAAGAGGCTGTTTCC+AGG | - | chr4.4:29643003-29643022 | None:intergenic | 45.0% |
| !! | GCTGAGAGTACCATCAACTA+TGG | + | chr4.4:29644612-29644631 | MS.gene006868:CDS | 45.0% |
| !! | TCCCACACCATTTGGTGTAT+TGG | - | chr4.4:29643044-29643063 | None:intergenic | 45.0% |
| AACATCAGTAGCTTCCGCTC+TGG | - | chr4.4:29644484-29644503 | None:intergenic | 50.0% | |
| AACGAAGATCGTGTGCACGT+TGG | + | chr4.4:29642137-29642156 | MS.gene006868:CDS | 50.0% | |
| AAGGTCACAGGTTCAAGTCC+TGG | + | chr4.4:29642982-29643001 | MS.gene006868:intron | 50.0% | |
| ACGAAGATCGTGTGCACGTT+GGG | + | chr4.4:29642138-29642157 | MS.gene006868:CDS | 50.0% | |
| ATCCCCGTTGGAGACATTCA+GGG | - | chr4.4:29642863-29642882 | None:intergenic | 50.0% | |
| ATCGAGGTCTGTTCCAATGG+TGG | + | chr4.4:29642167-29642186 | MS.gene006868:CDS | 50.0% | |
| ATCTGGGTTGCAGTGACAAC+CGG | - | chr4.4:29644429-29644448 | None:intergenic | 50.0% | |
| ATGCCCTGAATGTCTCCAAC+GGG | + | chr4.4:29642857-29642876 | MS.gene006868:CDS | 50.0% | |
| ATTGGAACAGACCTCGATGC+AGG | - | chr4.4:29642165-29642184 | None:intergenic | 50.0% | |
| CAACTTTACCAGTTGCGCCA+AGG | - | chr4.4:29642947-29642966 | None:intergenic | 50.0% | |
| CACTTCACAGATATCCCCGT+TGG | - | chr4.4:29642875-29642894 | None:intergenic | 50.0% | |
| CATGACAGCGCAGAGAATAC+CGG | - | chr4.4:29642301-29642320 | None:intergenic | 50.0% | |
| CGAACCGGATTTCTCAAGGA+TGG | + | chr4.4:29643543-29643562 | MS.gene006868:CDS | 50.0% | |
| CGAAGGGTCTCTGCAATAAC+GGG | + | chr4.4:29644994-29645013 | MS.gene006868:CDS | 50.0% | |
| CGCTGTCATGCTTGACACTA+AGG | + | chr4.4:29642311-29642330 | MS.gene006868:intron | 50.0% | |
| CTTAGTGGTGAAACTGCTGC+TGG | + | chr4.4:29644540-29644559 | MS.gene006868:CDS | 50.0% | |
| GAAGGGTCTCTGCAATAACG+GGG | + | chr4.4:29644995-29645014 | MS.gene006868:CDS | 50.0% | |
| GACGAAGCTAGACTCTCCAA+TGG | - | chr4.4:29644684-29644703 | None:intergenic | 50.0% | |
| GATGCATTTATGGTGGCACG+TGG | + | chr4.4:29644321-29644340 | MS.gene006868:CDS | 50.0% | |
| GCTGCGTCCAATACACCAAA+TGG | + | chr4.4:29643034-29643053 | MS.gene006868:intron | 50.0% | |
| GGTGGAAGTTCGCAAGTTGT+TGG | + | chr4.4:29643935-29643954 | MS.gene006868:CDS | 50.0% | |
| GTGGAGAAGCTTCTACAAGC+AGG | + | chr4.4:29642186-29642205 | MS.gene006868:CDS | 50.0% | |
| TATCCCCGTTGGAGACATTC+AGG | - | chr4.4:29642864-29642883 | None:intergenic | 50.0% | |
| TGACCCTGTTTCAGTTGGAC+AGG | - | chr4.4:29643573-29643592 | None:intergenic | 50.0% | |
| TGCATCGAGGTCTGTTCCAA+TGG | + | chr4.4:29642164-29642183 | MS.gene006868:CDS | 50.0% | |
| TGTCACTGCAACCCAGATGT+TGG | + | chr4.4:29644431-29644450 | MS.gene006868:CDS | 50.0% | |
| TGTCCAACTGAAACAGGGTC+AGG | + | chr4.4:29643572-29643591 | MS.gene006868:CDS | 50.0% | |
| TGTGCCATCCAGAACTGCAT+TGG | - | chr4.4:29644508-29644527 | None:intergenic | 50.0% | |
| TTGGCTCATGATGTGAAGCC+CGG | + | chr4.4:29643663-29643682 | MS.gene006868:CDS | 50.0% | |
| ! | CAATAACGGGGATTCTGTGG+TGG | + | chr4.4:29645007-29645026 | MS.gene006868:CDS | 50.0% |
| ! | CGTGCACACGATCTTCGTTT+TGG | - | chr4.4:29642136-29642155 | None:intergenic | 50.0% |
| ! | CTGCAATAACGGGGATTCTG+TGG | + | chr4.4:29645004-29645023 | MS.gene006868:CDS | 50.0% |
| ! | GGTGCTATAGCACTGTCACA+TGG | + | chr4.4:29642703-29642722 | MS.gene006868:intron | 50.0% |
| ! | TCCAATGGGTTCATCGGTAC+TGG | - | chr4.4:29644669-29644688 | None:intergenic | 50.0% |
| ! | TGATTGGTCCTGCAGTGATG+AGG | + | chr4.4:29644848-29644867 | MS.gene006868:CDS | 50.0% |
| ! | TTGATTCCAGTACTGAGCGC+GGG | + | chr4.4:29644903-29644922 | MS.gene006868:CDS | 50.0% |
| !! | ACCAGTACCGATGAACCCAT+TGG | + | chr4.4:29644665-29644684 | MS.gene006868:CDS | 50.0% |
| !! | GTTGCCAATGCAGTTCTGGA+TGG | + | chr4.4:29644501-29644520 | MS.gene006868:CDS | 50.0% |
| ACTGGAGCTCCCGTATATGC+AGG | - | chr4.4:29643080-29643099 | None:intergenic | 55.0% | |
| ATCACCTAGGCCAACCAGAG+CGG | + | chr4.4:29644467-29644486 | MS.gene006868:CDS | 55.0% | |
| ATGATTAGGGCAGGGCAACC+CGG | - | chr4.4:29643106-29643125 | None:intergenic | 55.0% | |
| CTGGAGCTCCCGTATATGCA+GGG | - | chr4.4:29643079-29643098 | None:intergenic | 55.0% | |
| CTTCCCGGACCCTGCATATA+CGG | + | chr4.4:29643067-29643086 | MS.gene006868:intron | 55.0% | |
| GGGAGATCCACTATGACTCC+AGG | - | chr4.4:29643816-29643835 | None:intergenic | 55.0% | |
| GTATATGCAGGGTCCGGGAA+GGG | - | chr4.4:29643068-29643087 | None:intergenic | 55.0% | |
| TATATGCAGGGTCCGGGAAG+GGG | - | chr4.4:29643067-29643086 | None:intergenic | 55.0% | |
| TCAGTAGCTTCCGCTCTGGT+TGG | - | chr4.4:29644480-29644499 | None:intergenic | 55.0% | |
| TGCCCTGAATGTCTCCAACG+GGG | + | chr4.4:29642858-29642877 | MS.gene006868:CDS | 55.0% | |
| TTCCCGGACCCTGCATATAC+GGG | + | chr4.4:29643068-29643087 | MS.gene006868:intron | 55.0% | |
| ! | CAGTGACAACCGGCTTTCCT+TGG | - | chr4.4:29644419-29644438 | None:intergenic | 55.0% |
| AATGGTGTGGGACCCCTTCC+CGG | + | chr4.4:29643052-29643071 | MS.gene006868:intron | 60.0% | |
| AGGGGTAACCTTGGCGCAAC+TGG | + | chr4.4:29642936-29642955 | MS.gene006868:intron | 60.0% | |
| ATACGGGAGCTCCAGTGCAC+CGG | + | chr4.4:29643084-29643103 | MS.gene006868:intron | 60.0% | |
| CGTATATGCAGGGTCCGGGA+AGG | - | chr4.4:29643069-29643088 | None:intergenic | 60.0% | |
| CTCCCGTATATGCAGGGTCC+GGG | - | chr4.4:29643073-29643092 | None:intergenic | 60.0% | |
| GCTCCCGTATATGCAGGGTC+CGG | - | chr4.4:29643074-29643093 | None:intergenic | 60.0% | |
| GGAAGGGGTCCCACACCATT+TGG | - | chr4.4:29643052-29643071 | None:intergenic | 60.0% | |
| TAGGGGCCGGAGATTCGAAC+CGG | + | chr4.4:29643528-29643547 | MS.gene006868:intron | 60.0% | |
| ! | GTGGTGGCTCTGCATCGTGT+GGG | + | chr4.4:29645023-29645042 | MS.gene006868:CDS | 60.0% |
| ! | TCAGGGCATTCGTCCCCACT+AGG | - | chr4.4:29642846-29642865 | None:intergenic | 60.0% |
| ! | TGTGGTGGCTCTGCATCGTG+TGG | + | chr4.4:29645022-29645041 | MS.gene006868:CDS | 60.0% |
| ATGGTGGCACGTGGCGACCT+TGG | + | chr4.4:29644330-29644349 | MS.gene006868:CDS | 65.0% | |
| GCACGTTGGGACCTGCATCG+AGG | + | chr4.4:29642151-29642170 | MS.gene006868:CDS | 65.0% | |
| GCAGAACCCGCGCTCAGTAC+TGG | - | chr4.4:29644912-29644931 | None:intergenic | 65.0% | |
| GGCACGTGGCGACCTTGGAA+TGG | + | chr4.4:29644335-29644354 | MS.gene006868:CDS | 65.0% | |
| GGCAGGGACCTCATCACTGC+AGG | - | chr4.4:29644859-29644878 | None:intergenic | 65.0% | |
| TACGGGAGCTCCAGTGCACC+GGG | + | chr4.4:29643085-29643104 | MS.gene006868:intron | 65.0% | |
| !! | GCTTCCGCTCTGGTTGGCCT+AGG | - | chr4.4:29644474-29644493 | None:intergenic | 65.0% |
| GGCAGGGCAACCCGGTGCAC+TGG | - | chr4.4:29643098-29643117 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 29642108 | 29645082 | 29642108 | ID=MS.gene006868 |
| chr4.4 | mRNA | 29642108 | 29645082 | 29642108 | ID=MS.gene006868.t1;Parent=MS.gene006868 |
| chr4.4 | exon | 29642108 | 29642300 | 29642108 | ID=MS.gene006868.t1.exon1;Parent=MS.gene006868.t1 |
| chr4.4 | CDS | 29642108 | 29642300 | 29642108 | ID=cds.MS.gene006868.t1;Parent=MS.gene006868.t1 |
| chr4.4 | exon | 29642848 | 29642891 | 29642848 | ID=MS.gene006868.t1.exon2;Parent=MS.gene006868.t1 |
| chr4.4 | CDS | 29642848 | 29642891 | 29642848 | ID=cds.MS.gene006868.t1;Parent=MS.gene006868.t1 |
| chr4.4 | exon | 29643531 | 29643992 | 29643531 | ID=MS.gene006868.t1.exon3;Parent=MS.gene006868.t1 |
| chr4.4 | CDS | 29643531 | 29643992 | 29643531 | ID=cds.MS.gene006868.t1;Parent=MS.gene006868.t1 |
| chr4.4 | exon | 29644270 | 29645082 | 29644270 | ID=MS.gene006868.t1.exon4;Parent=MS.gene006868.t1 |
| chr4.4 | CDS | 29644270 | 29645082 | 29644270 | ID=cds.MS.gene006868.t1;Parent=MS.gene006868.t1 |
| Gene Sequence |
| Protein sequence |
