AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene032695

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene032695.t1 MTR_6g004020 99.216 510 4 0 1 510 1 510 0.0 1043
MS.gene032695.t1 MTR_4g083340 78.208 491 107 0 20 510 7 497 0.0 818
MS.gene032695.t1 MTR_7g100760 77.800 491 109 0 20 510 10 500 0.0 810
MS.gene032695.t1 MTR_4g083330 75.153 491 95 2 20 510 10 473 0.0 744
MS.gene032695.t1 MTR_7g103420 44.153 496 263 9 22 506 30 522 2.54e-133 397
MS.gene032695.t1 MTR_1g091040 43.030 495 269 7 22 506 30 521 4.25e-132 394
MS.gene032695.t1 MTR_7g103420 43.249 511 261 11 22 506 30 537 9.68e-131 390
MS.gene032695.t1 MTR_1g061630 43.461 497 267 6 22 506 30 524 1.40e-128 385
MS.gene032695.t1 MTR_1g061630 43.260 497 252 7 22 506 30 508 1.72e-126 379
MS.gene032695.t1 MTR_7g103420 41.284 436 242 9 82 506 1 433 5.17e-104 318
MS.gene032695.t1 MTR_1g091040 43.251 363 200 5 148 506 28 388 6.54e-98 301
MS.gene032695.t1 MTR_5g014140 36.920 474 268 11 21 492 78 522 3.11e-85 273
MS.gene032695.t1 MTR_1g099360 36.875 480 260 12 21 492 104 548 3.29e-85 274
MS.gene032695.t1 MTR_6g034195 36.175 481 262 12 21 492 106 550 2.92e-84 271
MS.gene032695.t1 MTR_5g014140 41.590 327 181 6 21 343 78 398 5.50e-75 243
MS.gene032695.t1 MTR_1g105965 32.377 488 292 11 21 495 91 553 5.39e-74 244
MS.gene032695.t1 MTR_1g076540 30.661 499 291 11 21 495 90 557 2.28e-73 243
MS.gene032695.t1 MTR_1g105965 34.295 312 191 6 21 323 91 397 3.35e-55 190
MS.gene032695.t1 MTR_1g105965 30.093 216 138 5 21 228 91 301 7.26e-26 108
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene032695.t1 AT5G08570 88.235 510 60 0 1 510 1 510 0.0 948
MS.gene032695.t1 AT5G08570 88.235 510 60 0 1 510 1 510 0.0 948
MS.gene032695.t1 AT5G08570 88.235 510 60 0 1 510 1 510 0.0 948
MS.gene032695.t1 AT5G63680 87.059 510 66 0 1 510 1 510 0.0 934
MS.gene032695.t1 AT5G63680 87.059 510 66 0 1 510 1 510 0.0 934
MS.gene032695.t1 AT5G63680 87.059 510 66 0 1 510 1 510 0.0 934
MS.gene032695.t1 AT5G56350 79.633 491 100 0 20 510 8 498 0.0 818
MS.gene032695.t1 AT4G26390 78.004 491 108 0 20 510 7 497 0.0 802
MS.gene032695.t1 AT3G04050 69.763 506 148 4 6 506 1 506 0.0 724
MS.gene032695.t1 AT3G55650 68.191 503 156 3 12 510 8 510 0.0 702
MS.gene032695.t1 AT3G25960 69.461 501 140 4 12 510 8 497 0.0 702
MS.gene032695.t1 AT3G55810 66.194 494 145 4 21 510 17 492 0.0 653
MS.gene032695.t1 AT2G36580 44.848 495 261 8 22 506 30 522 1.09e-134 400
MS.gene032695.t1 AT3G52990 44.646 495 262 8 22 506 30 522 2.23e-134 399
MS.gene032695.t1 AT3G52990 43.312 471 255 8 46 506 1 469 8.79e-124 370
MS.gene032695.t1 AT1G32440 38.958 480 260 13 15 492 95 543 1.19e-87 280
MS.gene032695.t1 AT5G52920 36.287 474 271 11 21 492 111 555 8.03e-84 271
MS.gene032695.t1 AT3G22960 30.972 494 294 11 21 495 118 583 1.48e-72 241
MS.gene032695.t1 AT3G49160 34.300 207 123 6 135 332 389 591 6.17e-20 93.6
MS.gene032695.t1 AT3G49160 34.300 207 123 6 135 332 477 679 6.32e-20 94.0

Find 129 sgRNAs with CRISPR-Local

Find 185 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCAAAATTGTTTGTACTTT+GGG 0.213355 6.3:+104324 MS.gene032695:CDS
GAGTTTCGCTCTGGCCTTAT+TGG 0.243879 6.3:-106429 None:intergenic
ACCCAAAGTACAAACAATTT+TGG 0.262629 6.3:-104325 None:intergenic
CAGAGGCTTGATTCCTATAT+TGG 0.264607 6.3:+106607 MS.gene032695:CDS
TGTCCTTCTTTGAGTTGAAT+AGG 0.285375 6.3:-105259 None:intergenic
TATATTAAGCTGTGCCTTGC+TGG 0.290018 6.3:-106584 None:intergenic
TCATTTCAAGGTTGAGAATC+AGG 0.297800 6.3:+105971 MS.gene032695:intron
GTTGTTGCTCTTCATCGTAT+TGG 0.325415 6.3:+106734 MS.gene032695:CDS
GACCAAAATTGTTTGTACTT+TGG 0.339741 6.3:+104323 MS.gene032695:CDS
GCAGAATCATCCCTTGATTA+TGG 0.346101 6.3:+106323 MS.gene032695:CDS
TGCTGTACGCACAGCCAATA+AGG 0.350511 6.3:+106415 MS.gene032695:CDS
GCCAGGAAAATCTTCTCAAC+TGG 0.350809 6.3:-106074 None:intergenic
GTTAATGTCCGCAAGGTTCT+CGG 0.353104 6.3:+105625 MS.gene032695:CDS
GCAATCATATCAATATTGTT+AGG 0.355092 6.3:-105571 None:intergenic
TGCTCTTTCATTTGTTCGTA+AGG 0.360649 6.3:+105591 MS.gene032695:CDS
ATTTATAAGTGTAATCTTGT+TGG 0.364853 6.3:+106110 MS.gene032695:CDS
TGACCACAGACTCATTTGAT+TGG 0.381256 6.3:+106543 MS.gene032695:CDS
GCAGATCCTTCTGCCAATAT+AGG 0.382735 6.3:-106620 None:intergenic
GAGCATAGAATGGTATTTCC+AGG 0.388661 6.3:-105370 None:intergenic
TGATCATGGATTCAAGCATC+TGG 0.395013 6.3:-106154 None:intergenic
CTACATCAGTTGCTTCGGCT+CGG 0.397785 6.3:-106193 None:intergenic
AGGCTTTCCAATGGACTCAT+AGG 0.405256 6.3:-106383 None:intergenic
TGCTGGTGCCTCATCACTGC+AGG 0.408792 6.3:-106567 None:intergenic
GCGTGAGACTGATGCGTTCA+TGG 0.409117 6.3:+106022 MS.gene032695:CDS
CGGACTGGCTTTCTGAAAGA+TGG 0.416803 6.3:+105232 MS.gene032695:CDS
ATGGTGGCCCGTGGTGATCT+TGG 0.421038 6.3:+106041 MS.gene032695:CDS
AGAATCTACAGATGCAATTC+TGG 0.426172 6.3:+106658 MS.gene032695:CDS
TAAGGAAGATATTCTTGAAT+GGG 0.428016 6.3:+105543 MS.gene032695:CDS
TACATCAGTTGCTTCGGCTC+GGG 0.429321 6.3:-106192 None:intergenic
GATTTCATAATCAGTAGTTA+TGG 0.432621 6.3:-105290 None:intergenic
CTTAAGTCAGCAACACAAAA+GGG 0.437722 6.3:+106689 MS.gene032695:CDS
AATCTTGTCTGTGGTAGTTC+CGG 0.438220 6.3:+106517 MS.gene032695:CDS
CTGCCTGTCCACTTGAAGCC+TGG 0.442454 6.3:+105352 MS.gene032695:CDS
CACGACCATCGTTTGGTAGT+TGG 0.447300 6.3:-104293 None:intergenic
AACTACTGATTATGAAATCA+AGG 0.451183 6.3:+105294 MS.gene032695:CDS
AGAAAGCCAGTCCGAATCTC+AGG 0.453908 6.3:-105223 None:intergenic
GTAGCCAATGCAGTTCTTGA+TGG 0.460232 6.3:+106212 MS.gene032695:CDS
TGAATATAGCACCATAATCA+AGG 0.462445 6.3:-106334 None:intergenic
AATGAGTCTGTGGTCAAAAC+CGG 0.463086 6.3:-106536 None:intergenic
CTGTCAAAACTCTGCAATGT+TGG 0.465660 6.3:+105456 MS.gene032695:CDS
TCTTAAGTCAGCAACACAAA+AGG 0.468356 6.3:+106688 MS.gene032695:CDS
ATTGGCTACATCAGTTGCTT+CGG 0.471027 6.3:-106198 None:intergenic
CCAAGTTAGTTGCTAAGTAT+AGG 0.476764 6.3:+106483 MS.gene032695:CDS
TTAGGAACACGACCATCGTT+TGG 0.481093 6.3:-104300 None:intergenic
CAAAAGGGGCTTTGTAAACC+TGG 0.486157 6.3:+106704 MS.gene032695:CDS
TCCATTGCCTATGAGTCCAT+TGG 0.486716 6.3:+106376 MS.gene032695:CDS
CAGGGGCCTGAGATTCGGAC+TGG 0.487007 6.3:+105217 MS.gene032695:intron
TTAATGTCCGCAAGGTTCTC+GGG 0.488664 6.3:+105626 MS.gene032695:CDS
GGAACTACCACAGACAAGAT+TGG 0.490094 6.3:-106515 None:intergenic
GCTTCGGCTCGGGTTGGCCG+AGG 0.492369 6.3:-106182 None:intergenic
TGTCAAAACTCTGCAATGTT+GGG 0.494616 6.3:+105457 MS.gene032695:CDS
ATAAGGAAGATATTCTTGAA+TGG 0.496374 6.3:+105542 MS.gene032695:CDS
CACTCTTACTGACAAGGATA+AGG 0.497352 6.3:+105525 MS.gene032695:CDS
CTTATCCTTGTCAGTAAGAG+TGG 0.498847 6.3:-105524 None:intergenic
ACCGACTGTGTCATGCTTAG+TGG 0.500132 6.3:+106236 MS.gene032695:CDS
CTATATTCAAAGAGATGATA+AGG 0.502593 6.3:+106348 MS.gene032695:CDS
GGAAGATCCACCACAACACC+AGG 0.502856 6.3:-105502 None:intergenic
TTTCCAGGCTTCAAGTGGAC+AGG 0.509567 6.3:-105355 None:intergenic
CTTAGTGGTGAAAGTGCTGC+TGG 0.513325 6.3:+106251 MS.gene032695:CDS
CAATCATATCAATATTGTTA+GGG 0.517496 6.3:-105570 None:intergenic
GCTCTTTCATTTGTTCGTAA+GGG 0.518972 6.3:+105592 MS.gene032695:CDS
TAACTCATTGATATCATCTC+CGG 0.519842 6.3:-105322 None:intergenic
TGGTACTCATGAATATCATC+AGG 0.520603 6.3:+104425 MS.gene032695:CDS
TTATGAAATCAAGGGAGATC+CGG 0.521337 6.3:+105303 MS.gene032695:CDS
TGAACTTGCTGTCAAAATCA+TGG 0.526619 6.3:+106283 MS.gene032695:CDS
CACGACAATGAGTTTCGCTC+TGG 0.526714 6.3:-106438 None:intergenic
AAGTCTGCTATGCATTCTAC+TGG 0.527158 6.3:+104465 MS.gene032695:CDS
AATACCATTCTATGCTCTGA+TGG 0.528435 6.3:+105376 MS.gene032695:CDS
TTCCATTCCAAGATCACCAC+GGG 0.528799 6.3:-106048 None:intergenic
ATGTCGAACATAGACATTGA+AGG 0.535384 6.3:+104261 MS.gene032695:CDS
ATCTCAACAGATCTCGAAGC+AGG 0.538705 6.3:-104348 None:intergenic
ACAGACAAGATTGGAACTGC+TGG 0.538859 6.3:-106506 None:intergenic
CCAGGAAAATCTTCTCAACT+GGG 0.540531 6.3:-106073 None:intergenic
CCTATACTTAGCAACTAACT+TGG 0.544461 6.3:-106483 None:intergenic
AAACCTATTCAACTCAAAGA+AGG 0.544786 6.3:+105256 MS.gene032695:CDS
TGGCCGAGGAGACTTGATCA+TGG 0.546979 6.3:-106168 None:intergenic
TCAGTTGCTTCGGCTCGGGT+TGG 0.547204 6.3:-106188 None:intergenic
ATCTGGGTAGCAGTCACCAC+AGG 0.548128 6.3:-106137 None:intergenic
CAATCTCCCTGGTGTTGTGG+TGG 0.549734 6.3:+105495 MS.gene032695:CDS
TTGTCCTGTGATCAAGAAGC+CGG 0.554022 6.3:+105418 MS.gene032695:CDS
TGGTATTTCCAGGCTTCAAG+TGG 0.557830 6.3:-105360 None:intergenic
ACTCTGCAATGTTGGGTGAG+AGG 0.560793 6.3:+105464 MS.gene032695:CDS
TGCGTACAGCAGATGATGCA+AGG 0.569708 6.3:-106403 None:intergenic
AGAGCAACAACGGCGTCACC+AGG 0.569748 6.3:-106722 None:intergenic
TCCAATGGACTCATAGGCAA+TGG 0.571271 6.3:-106377 None:intergenic
GGTTCCATCAAGAACTGCAT+TGG 0.573593 6.3:-106216 None:intergenic
ACAGCGACATCTAACAGTAC+CGG 0.574440 6.3:-105437 None:intergenic
GCATATTCAGTTGATGTCAA+AGG 0.575993 6.3:+105660 MS.gene032695:CDS
TGTTCCATCAGAGCATAGAA+TGG 0.578771 6.3:-105380 None:intergenic
TTGATTCCTATATTGGCAGA+AGG 0.579355 6.3:+106614 MS.gene032695:CDS
AGCAGACTTGAGATTATCGA+GGG 0.582018 6.3:-104451 None:intergenic
TGTCAATCTCCCTGGTGTTG+TGG 0.583872 6.3:+105492 MS.gene032695:CDS
TGTCGAACATAGACATTGAA+GGG 0.588964 6.3:+104262 MS.gene032695:CDS
GATCATGGATTCAAGCATCT+GGG 0.589960 6.3:-106153 None:intergenic
CTCATTGTCGTGCTGACACG+AGG 0.591073 6.3:+106449 MS.gene032695:CDS
TTATCCTTGTCAGTAAGAGT+GGG 0.593774 6.3:-105523 None:intergenic
AATCCATGATCAAGTCTCCT+CGG 0.597161 6.3:+106165 MS.gene032695:CDS
TGATCTTGTTAATGTCCGCA+AGG 0.600121 6.3:+105618 MS.gene032695:CDS
GGCCCGTGGTGATCTTGGAA+TGG 0.607650 6.3:+106046 MS.gene032695:CDS
AGCAGTTCCAATCTTGTCTG+TGG 0.608373 6.3:+106508 MS.gene032695:CDS
ACTACTGATTATGAAATCAA+GGG 0.609026 6.3:+105295 MS.gene032695:CDS
TGCCGTCATGCTCGACACCA+AGG 0.609600 6.3:+104497 MS.gene032695:CDS
GATGATGCAAGGCTTTCCAA+TGG 0.615392 6.3:-106392 None:intergenic
GAATATAGCACCATAATCAA+GGG 0.615983 6.3:-106333 None:intergenic
AAGGAAGATATTCTTGAATG+GGG 0.623075 6.3:+105544 MS.gene032695:CDS
TTGTCGTGCTGACACGAGGT+GGG 0.624494 6.3:+106453 MS.gene032695:CDS
ACCACTAAGCATGACACAGT+CGG 0.629348 6.3:-106237 None:intergenic
TTCAAGGTTGAGAATCAGGA+GGG 0.631704 6.3:+105975 MS.gene032695:intron
AGTACCGGCTTCTTGATCAC+AGG 0.634918 6.3:-105422 None:intergenic
TTTCAAGGTTGAGAATCAGG+AGG 0.635083 6.3:+105974 MS.gene032695:intron
TTAAGTCAGCAACACAAAAG+GGG 0.635960 6.3:+106690 MS.gene032695:CDS
GATGCGTTCATGGTGGCCCG+TGG 0.637855 6.3:+106032 MS.gene032695:CDS
AACTGAATATGCTTAGCATG+TGG 0.639472 6.3:-105649 None:intergenic
ATTGTCGTGCTGACACGAGG+TGG 0.639978 6.3:+106452 MS.gene032695:CDS
GGTCCAATCAAATGAGTCTG+TGG 0.640580 6.3:-106546 None:intergenic
TAGCAGACTTGAGATTATCG+AGG 0.648969 6.3:-104452 None:intergenic
AACCTTGGTGTCGAGCATGA+CGG 0.653974 6.3:-104499 None:intergenic
TGATTGGACCTGCAGTGATG+AGG 0.656525 6.3:+106559 MS.gene032695:CDS
TCTTCCCACTCTTACTGACA+AGG 0.660905 6.3:+105519 MS.gene032695:CDS
GCAGTGATGAGGCACCAGCA+AGG 0.676635 6.3:+106570 MS.gene032695:CDS
AATACGATGAAGAGCAACAA+CGG 0.684681 6.3:-106732 None:intergenic
TAATCTTGTTGGCAAGCCTG+TGG 0.690354 6.3:+106121 MS.gene032695:CDS
AGGCACAGCTTAATATACAG+AGG 0.690557 6.3:+106590 MS.gene032695:CDS
TTTCCATTCCAAGATCACCA+CGG 0.695446 6.3:-106049 None:intergenic
TTGAACCAACTACCAAACGA+TGG 0.710339 6.3:+104288 MS.gene032695:CDS
TGAACGCATCAGTCTCACGC+AGG 0.710992 6.3:-106019 None:intergenic
TGAGACTGATGCGTTCATGG+TGG 0.741662 6.3:+106025 MS.gene032695:CDS
GAAGATCCACCACAACACCA+GGG 0.757023 6.3:-105501 None:intergenic
CATGTGGCCCGAGAACCTTG+CGG 0.783590 6.3:-105633 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CAATTTTAATAATGATATAA+AGG + chr6.3:105707-105726 MS.gene032695:intron 10.0%
!!! TTATTATTTCAATTTTTGTA+AGG + chr6.3:104783-104802 MS.gene032695:intron 10.0%
!!! GTTTTTAAATAATGATTTTG+TGG + chr6.3:105944-105963 MS.gene032695:intron 15.0%
!! ATTTATAAGTGTAATCTTGT+TGG + chr6.3:106110-106129 MS.gene032695:CDS 20.0%
!! CAATCATATCAATATTGTTA+GGG - chr6.3:105573-105592 None:intergenic 20.0%
!! TTGAAAAGTTGTTAATTGAA+GGG - chr6.3:104734-104753 None:intergenic 20.0%
!! TTTGAAAAGTTGTTAATTGA+AGG - chr6.3:104735-104754 None:intergenic 20.0%
!!! AATCAATTTTGTGTTTAATC+AGG + chr6.3:104702-104721 MS.gene032695:intron 20.0%
! ACCAAAATTGTTTGTACTTT+GGG + chr6.3:104324-104343 MS.gene032695:CDS 25.0%
! ATAAGGAAGATATTCTTGAA+TGG + chr6.3:105542-105561 MS.gene032695:CDS 25.0%
! ATTCAAAAACTTCTTAAAGC+TGG + chr6.3:104372-104391 MS.gene032695:CDS 25.0%
! CATTAGAAGATATATCAACA+AGG - chr6.3:105795-105814 None:intergenic 25.0%
! CTATATTCAAAGAGATGATA+AGG + chr6.3:106348-106367 MS.gene032695:CDS 25.0%
! GATTTCATAATCAGTAGTTA+TGG - chr6.3:105293-105312 None:intergenic 25.0%
! GCAATCATATCAATATTGTT+AGG - chr6.3:105574-105593 None:intergenic 25.0%
! TAAGGAAGATATTCTTGAAT+GGG + chr6.3:105543-105562 MS.gene032695:CDS 25.0%
! TAGCAATAAAATAGTCTCTA+AGG - chr6.3:105085-105104 None:intergenic 25.0%
! TCATATTAAACAGACAATCA+TGG - chr6.3:105866-105885 None:intergenic 25.0%
!! AACTACTGATTATGAAATCA+AGG + chr6.3:105294-105313 MS.gene032695:CDS 25.0%
!! ACTACTGATTATGAAATCAA+GGG + chr6.3:105295-105314 MS.gene032695:CDS 25.0%
!! ATTCTTAACGTTTTCATGTA+CGG + chr6.3:105163-105182 MS.gene032695:intron 25.0%
!! TTTTGTGGAATTTCATTTCA+AGG + chr6.3:105959-105978 MS.gene032695:intron 25.0%
AAACCTATTCAACTCAAAGA+AGG + chr6.3:105256-105275 MS.gene032695:CDS 30.0%
AACACCACAAACAAATGAAA+TGG - chr6.3:105737-105756 None:intergenic 30.0%
AAGAGAATCATAACTGTACA+AGG - chr6.3:105112-105131 None:intergenic 30.0%
AAGGAAGATATTCTTGAATG+GGG + chr6.3:105544-105563 MS.gene032695:CDS 30.0%
AAGGACATGCAATTCATTAA+TGG - chr6.3:105776-105795 None:intergenic 30.0%
ATAGAAACAAGAACAAACCT+TGG - chr6.3:104517-104536 None:intergenic 30.0%
ATCACCATTTCATTTGTTTG+TGG + chr6.3:105730-105749 MS.gene032695:intron 30.0%
ATGCAATTCATTAATGGTGA+AGG - chr6.3:105770-105789 None:intergenic 30.0%
GAATATAGCACCATAATCAA+GGG - chr6.3:106336-106355 None:intergenic 30.0%
GACCAAAATTGTTTGTACTT+TGG + chr6.3:104323-104342 MS.gene032695:CDS 30.0%
TAACTCATTGATATCATCTC+CGG - chr6.3:105325-105344 None:intergenic 30.0%
TGAATATAGCACCATAATCA+AGG - chr6.3:106337-106356 None:intergenic 30.0%
TGCAATTCATTAATGGTGAA+GGG - chr6.3:105769-105788 None:intergenic 30.0%
! ACCCAAAGTACAAACAATTT+TGG - chr6.3:104328-104347 None:intergenic 30.0%
! TTGAACAAGTGATTTGTGTT+TGG + chr6.3:104633-104652 MS.gene032695:intron 30.0%
!! GTACAAACAATTTTGGTCTT+AGG - chr6.3:104321-104340 None:intergenic 30.0%
!!! TTTTTTGTCTGTAGACAAAG+TGG + chr6.3:104982-105001 MS.gene032695:intron 30.0%
AACTGAATATGCTTAGCATG+TGG - chr6.3:105652-105671 None:intergenic 35.0%
AATACCATTCTATGCTCTGA+TGG + chr6.3:105376-105395 MS.gene032695:CDS 35.0%
AATACGATGAAGAGCAACAA+CGG - chr6.3:106735-106754 None:intergenic 35.0%
AGAATCTACAGATGCAATTC+TGG + chr6.3:106658-106677 MS.gene032695:CDS 35.0%
ATGTCGAACATAGACATTGA+AGG + chr6.3:104261-104280 MS.gene032695:CDS 35.0%
ATTAAGCACGACTTCAGAAT+TGG - chr6.3:105923-105942 None:intergenic 35.0%
CAATTCATTAATGGTGAAGG+GGG - chr6.3:105767-105786 None:intergenic 35.0%
CATAGCAATAGCATAGCATA+GGG + chr6.3:104542-104561 MS.gene032695:intron 35.0%
CCAAGTTAGTTGCTAAGTAT+AGG + chr6.3:106483-106502 MS.gene032695:CDS 35.0%
CCTATACTTAGCAACTAACT+TGG - chr6.3:106486-106505 None:intergenic 35.0%
CTTAAGTCAGCAACACAAAA+GGG + chr6.3:106689-106708 MS.gene032695:CDS 35.0%
GCAATTCATTAATGGTGAAG+GGG - chr6.3:105768-105787 None:intergenic 35.0%
GCTCTTTCATTTGTTCGTAA+GGG + chr6.3:105592-105611 MS.gene032695:CDS 35.0%
TCATTTCAAGGTTGAGAATC+AGG + chr6.3:105971-105990 MS.gene032695:intron 35.0%
TCTTAAGTCAGCAACACAAA+AGG + chr6.3:106688-106707 MS.gene032695:CDS 35.0%
TGCTCTTTCATTTGTTCGTA+AGG + chr6.3:105591-105610 MS.gene032695:CDS 35.0%
TGGTACTCATGAATATCATC+AGG + chr6.3:104425-104444 MS.gene032695:CDS 35.0%
TGTCAAAACTCTGCAATGTT+GGG + chr6.3:105457-105476 MS.gene032695:CDS 35.0%
TGTCGAACATAGACATTGAA+GGG + chr6.3:104262-104281 MS.gene032695:CDS 35.0%
TTAAGTCAGCAACACAAAAG+GGG + chr6.3:106690-106709 MS.gene032695:CDS 35.0%
TTATCCTTGTCAGTAAGAGT+GGG - chr6.3:105526-105545 None:intergenic 35.0%
TTATGAAATCAAGGGAGATC+CGG + chr6.3:105303-105322 MS.gene032695:CDS 35.0%
TTGACATTGACAATTGAGCT+AGG - chr6.3:104809-104828 None:intergenic 35.0%
TTGATTCCTATATTGGCAGA+AGG + chr6.3:106614-106633 MS.gene032695:CDS 35.0%
! AAATCATCATTTTCTGTGCC+AGG - chr6.3:106094-106113 None:intergenic 35.0%
! GCATATTCAGTTGATGTCAA+AGG + chr6.3:105660-105679 MS.gene032695:CDS 35.0%
! GCTCGTTTCAATTTTTCACA+TGG + chr6.3:104405-104424 MS.gene032695:CDS 35.0%
!! AATTCTGAAGTCGTGCTTAA+TGG + chr6.3:105922-105941 MS.gene032695:intron 35.0%
!! ATGATTTTGACAGCAAGTTC+AGG - chr6.3:106284-106303 None:intergenic 35.0%
!! TACTGTACTGTGTTTTTGCA+GGG + chr6.3:105199-105218 MS.gene032695:intron 35.0%
!! TGAACTTGCTGTCAAAATCA+TGG + chr6.3:106283-106302 MS.gene032695:CDS 35.0%
!! TGATTTTGACAGCAAGTTCA+GGG - chr6.3:106283-106302 None:intergenic 35.0%
!! TGTCCTTCTTTGAGTTGAAT+AGG - chr6.3:105262-105281 None:intergenic 35.0%
!!! TTTTTTGTCTGTAGACAACG+CGG - chr6.3:104911-104930 None:intergenic 35.0%
AAGTCACACAAACGACTGTA+AGG + chr6.3:105027-105046 MS.gene032695:intron 40.0%
AAGTCTGCTATGCATTCTAC+TGG + chr6.3:104465-104484 MS.gene032695:CDS 40.0%
AATCCATGATCAAGTCTCCT+CGG + chr6.3:106165-106184 MS.gene032695:CDS 40.0%
AATCTTGTCTGTGGTAGTTC+CGG + chr6.3:106517-106536 MS.gene032695:CDS 40.0%
AATGAGTCTGTGGTCAAAAC+CGG - chr6.3:106539-106558 None:intergenic 40.0%
AGCAGACTTGAGATTATCGA+GGG - chr6.3:104454-104473 None:intergenic 40.0%
AGGAAAAATGTCAATCTCCC+TGG + chr6.3:105484-105503 MS.gene032695:CDS 40.0%
AGGCACAGCTTAATATACAG+AGG + chr6.3:106590-106609 MS.gene032695:CDS 40.0%
ATTGGCTACATCAGTTGCTT+CGG - chr6.3:106201-106220 None:intergenic 40.0%
CACTCTTACTGACAAGGATA+AGG + chr6.3:105525-105544 MS.gene032695:CDS 40.0%
CAGAGGCTTGATTCCTATAT+TGG + chr6.3:106607-106626 MS.gene032695:CDS 40.0%
CCAGGAAAATCTTCTCAACT+GGG - chr6.3:106076-106095 None:intergenic 40.0%
CCATCAATATCATGTTGCTG+AGG + chr6.3:104939-104958 MS.gene032695:intron 40.0%
CCTCAGCAACATGATATTGA+TGG - chr6.3:104942-104961 None:intergenic 40.0%
CTGTCAAAACTCTGCAATGT+TGG + chr6.3:105456-105475 MS.gene032695:CDS 40.0%
CTTATCCTTGTCAGTAAGAG+TGG - chr6.3:105527-105546 None:intergenic 40.0%
GAGCATAGAATGGTATTTCC+AGG - chr6.3:105373-105392 None:intergenic 40.0%
GATCATGGATTCAAGCATCT+GGG - chr6.3:106156-106175 None:intergenic 40.0%
GCAGAATCATCCCTTGATTA+TGG + chr6.3:106323-106342 MS.gene032695:CDS 40.0%
GCATAGCAATAGCATAGCAT+AGG + chr6.3:104541-104560 MS.gene032695:intron 40.0%
GTTGTTGCTCTTCATCGTAT+TGG + chr6.3:106734-106753 MS.gene032695:CDS 40.0%
TAGCAGACTTGAGATTATCG+AGG - chr6.3:104455-104474 None:intergenic 40.0%
TATATTAAGCTGTGCCTTGC+TGG - chr6.3:106587-106606 None:intergenic 40.0%
TCGTTTGTGTGACTTTCAAG+TGG - chr6.3:105022-105041 None:intergenic 40.0%
TGACCACAGACTCATTTGAT+TGG + chr6.3:106543-106562 MS.gene032695:CDS 40.0%
TGATCATGGATTCAAGCATC+TGG - chr6.3:106157-106176 None:intergenic 40.0%
TGATCTTGTTAATGTCCGCA+AGG + chr6.3:105618-105637 MS.gene032695:CDS 40.0%
TGTTCCATCAGAGCATAGAA+TGG - chr6.3:105383-105402 None:intergenic 40.0%
TTCAAGGTTGAGAATCAGGA+GGG + chr6.3:105975-105994 MS.gene032695:intron 40.0%
TTGAACCAACTACCAAACGA+TGG + chr6.3:104288-104307 MS.gene032695:CDS 40.0%
TTTCAAGGTTGAGAATCAGG+AGG + chr6.3:105974-105993 MS.gene032695:intron 40.0%
TTTCCATTCCAAGATCACCA+CGG - chr6.3:106052-106071 None:intergenic 40.0%
!! ACTGTACTGTGTTTTTGCAG+GGG + chr6.3:105200-105219 MS.gene032695:intron 40.0%
!! CTACTGTACTGTGTTTTTGC+AGG + chr6.3:105198-105217 MS.gene032695:intron 40.0%
AAGGTTTGACACCTTCACCT+GGG - chr6.3:105066-105085 None:intergenic 45.0%
ACAAACGACTGTAAGGTCCT+AGG + chr6.3:105034-105053 MS.gene032695:intron 45.0%
ACAGACAAGATTGGAACTGC+TGG - chr6.3:106509-106528 None:intergenic 45.0%
ACAGCGACATCTAACAGTAC+CGG - chr6.3:105440-105459 None:intergenic 45.0%
ACCACTAAGCATGACACAGT+CGG - chr6.3:106240-106259 None:intergenic 45.0%
AGCAGTTCCAATCTTGTCTG+TGG + chr6.3:106508-106527 MS.gene032695:CDS 45.0%
ATCTCAACAGATCTCGAAGC+AGG - chr6.3:104351-104370 None:intergenic 45.0%
GATGATGCAAGGCTTTCCAA+TGG - chr6.3:106395-106414 None:intergenic 45.0%
GCAGATCCTTCTGCCAATAT+AGG - chr6.3:106623-106642 None:intergenic 45.0%
GCCAGGAAAATCTTCTCAAC+TGG - chr6.3:106077-106096 None:intergenic 45.0%
GGAACTACCACAGACAAGAT+TGG - chr6.3:106518-106537 None:intergenic 45.0%
GGTCCAATCAAATGAGTCTG+TGG - chr6.3:106549-106568 None:intergenic 45.0%
GGTTCCATCAAGAACTGCAT+TGG - chr6.3:106219-106238 None:intergenic 45.0%
GTAGCCAATGCAGTTCTTGA+TGG + chr6.3:106212-106231 MS.gene032695:CDS 45.0%
GTTAATGTCCGCAAGGTTCT+CGG + chr6.3:105625-105644 MS.gene032695:CDS 45.0%
TAAGGTTTGACACCTTCACC+TGG - chr6.3:105067-105086 None:intergenic 45.0%
TAATCTTGTTGGCAAGCCTG+TGG + chr6.3:106121-106140 MS.gene032695:CDS 45.0%
TAGACAAGACATCCTCACCT+GGG + chr6.3:104835-104854 MS.gene032695:intron 45.0%
TCCATTGCCTATGAGTCCAT+TGG + chr6.3:106376-106395 MS.gene032695:CDS 45.0%
TCTTCCCACTCTTACTGACA+AGG + chr6.3:105519-105538 MS.gene032695:CDS 45.0%
TGGTATTTCCAGGCTTCAAG+TGG - chr6.3:105363-105382 None:intergenic 45.0%
TTAATGTCCGCAAGGTTCTC+GGG + chr6.3:105626-105645 MS.gene032695:CDS 45.0%
TTAGACAAGACATCCTCACC+TGG + chr6.3:104834-104853 MS.gene032695:intron 45.0%
TTAGGAACACGACCATCGTT+TGG - chr6.3:104303-104322 None:intergenic 45.0%
TTCCATTCCAAGATCACCAC+GGG - chr6.3:106051-106070 None:intergenic 45.0%
TTGTCCTGTGATCAAGAAGC+CGG + chr6.3:105418-105437 MS.gene032695:CDS 45.0%
! AGGCTTTCCAATGGACTCAT+AGG - chr6.3:106386-106405 None:intergenic 45.0%
! CAAAAGGGGCTTTGTAAACC+TGG + chr6.3:106704-106723 MS.gene032695:CDS 45.0%
! CCCAGTTGAGAAGATTTTCC+TGG + chr6.3:106073-106092 MS.gene032695:CDS 45.0%
! TCCAATGGACTCATAGGCAA+TGG - chr6.3:106380-106399 None:intergenic 45.0%
ACCGACTGTGTCATGCTTAG+TGG + chr6.3:106236-106255 MS.gene032695:CDS 50.0%
ACGCACAACTGCGAGATTGT+GGG - chr6.3:104867-104886 None:intergenic 50.0%
ACTCTGCAATGTTGGGTGAG+AGG + chr6.3:105464-105483 MS.gene032695:CDS 50.0%
AGAAAGCCAGTCCGAATCTC+AGG - chr6.3:105226-105245 None:intergenic 50.0%
CACGACAATGAGTTTCGCTC+TGG - chr6.3:106441-106460 None:intergenic 50.0%
CTACATCAGTTGCTTCGGCT+CGG - chr6.3:106196-106215 None:intergenic 50.0%
GAAGATCCACCACAACACCA+GGG - chr6.3:105504-105523 None:intergenic 50.0%
GAGATTGTGGGTACAAACCC+AGG - chr6.3:104855-104874 None:intergenic 50.0%
TACATCAGTTGCTTCGGCTC+GGG - chr6.3:106195-106214 None:intergenic 50.0%
TGAGACTGATGCGTTCATGG+TGG + chr6.3:106025-106044 MS.gene032695:CDS 50.0%
TGATTGGACCTGCAGTGATG+AGG + chr6.3:106559-106578 MS.gene032695:CDS 50.0%
TGCGTACAGCAGATGATGCA+AGG - chr6.3:106406-106425 None:intergenic 50.0%
TGCTGTACGCACAGCCAATA+AGG + chr6.3:106415-106434 MS.gene032695:CDS 50.0%
TTTCCAGGCTTCAAGTGGAC+AGG - chr6.3:105358-105377 None:intergenic 50.0%
! AAGGTCCTAGGTTCTAACCC+AGG + chr6.3:105046-105065 MS.gene032695:intron 50.0%
! CACGACCATCGTTTGGTAGT+TGG - chr6.3:104296-104315 None:intergenic 50.0%
! CTAGGTTCTAACCCAGGTGA+AGG + chr6.3:105052-105071 MS.gene032695:intron 50.0%
! CTTCACCTGGGTTAGAACCT+AGG - chr6.3:105054-105073 None:intergenic 50.0%
! TGTCAATCTCCCTGGTGTTG+TGG + chr6.3:105492-105511 MS.gene032695:CDS 50.0%
! TTTTGCAGGGGCCTGAGATT+CGG + chr6.3:105212-105231 MS.gene032695:intron 50.0%
!! AACCTTGGTGTCGAGCATGA+CGG - chr6.3:104502-104521 None:intergenic 50.0%
!! AGTACCGGCTTCTTGATCAC+AGG - chr6.3:105425-105444 None:intergenic 50.0%
!! CGGACTGGCTTTCTGAAAGA+TGG + chr6.3:105232-105251 MS.gene032695:CDS 50.0%
!! CTTAGTGGTGAAAGTGCTGC+TGG + chr6.3:106251-106270 MS.gene032695:CDS 50.0%
!! GAGTTTCGCTCTGGCCTTAT+TGG - chr6.3:106432-106451 None:intergenic 50.0%
ATCTGGGTAGCAGTCACCAC+AGG - chr6.3:106140-106159 None:intergenic 55.0%
CACGCACAACTGCGAGATTG+TGG - chr6.3:104868-104887 None:intergenic 55.0%
GCGTGAGACTGATGCGTTCA+TGG + chr6.3:106022-106041 MS.gene032695:CDS 55.0%
GGAAGATCCACCACAACACC+AGG - chr6.3:105505-105524 None:intergenic 55.0%
TGAACGCATCAGTCTCACGC+AGG - chr6.3:106022-106041 None:intergenic 55.0%
TGGCCGAGGAGACTTGATCA+TGG - chr6.3:106171-106190 None:intergenic 55.0%
TGTGGGTACAAACCCAGGTG+AGG - chr6.3:104850-104869 None:intergenic 55.0%
! ATTGTCGTGCTGACACGAGG+TGG + chr6.3:106452-106471 MS.gene032695:CDS 55.0%
! CTCATTGTCGTGCTGACACG+AGG + chr6.3:106449-106468 MS.gene032695:CDS 55.0%
! TTGTCGTGCTGACACGAGGT+GGG + chr6.3:106453-106472 MS.gene032695:CDS 55.0%
!! CAATCTCCCTGGTGTTGTGG+TGG + chr6.3:105495-105514 MS.gene032695:CDS 55.0%
AGAGCAACAACGGCGTCACC+AGG - chr6.3:106725-106744 None:intergenic 60.0%
ATGGTGGCCCGTGGTGATCT+TGG + chr6.3:106041-106060 MS.gene032695:CDS 60.0%
CATGTGGCCCGAGAACCTTG+CGG - chr6.3:105636-105655 None:intergenic 60.0%
CTGCCTGTCCACTTGAAGCC+TGG + chr6.3:105352-105371 MS.gene032695:CDS 60.0%
GGCCCGTGGTGATCTTGGAA+TGG + chr6.3:106046-106065 MS.gene032695:CDS 60.0%
TGCCGTCATGCTCGACACCA+AGG + chr6.3:104497-104516 MS.gene032695:CDS 60.0%
TGCTGGTGCCTCATCACTGC+AGG - chr6.3:106570-106589 None:intergenic 60.0%
! GCAGTGATGAGGCACCAGCA+AGG + chr6.3:106570-106589 MS.gene032695:CDS 60.0%
!! TCAGTTGCTTCGGCTCGGGT+TGG - chr6.3:106191-106210 None:intergenic 60.0%
CAGGGGCCTGAGATTCGGAC+TGG + chr6.3:105217-105236 MS.gene032695:intron 65.0%
GATGCGTTCATGGTGGCCCG+TGG + chr6.3:106032-106051 MS.gene032695:CDS 65.0%
!! GCTTCGGCTCGGGTTGGCCG+AGG - chr6.3:106185-106204 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr6.3 gene 104261 106793 104261 ID=MS.gene032695
chr6.3 mRNA 104261 106793 104261 ID=MS.gene032695.t1;Parent=MS.gene032695
chr6.3 exon 104261 104518 104261 ID=MS.gene032695.t1.exon1;Parent=MS.gene032695.t1
chr6.3 CDS 104261 104518 104261 ID=cds.MS.gene032695.t1;Parent=MS.gene032695.t1
chr6.3 exon 105220 105681 105220 ID=MS.gene032695.t1.exon2;Parent=MS.gene032695.t1
chr6.3 CDS 105220 105681 105220 ID=cds.MS.gene032695.t1;Parent=MS.gene032695.t1
chr6.3 exon 105981 106793 105981 ID=MS.gene032695.t1.exon3;Parent=MS.gene032695.t1
chr6.3 CDS 105981 106793 105981 ID=cds.MS.gene032695.t1;Parent=MS.gene032695.t1
Gene Sequence

>MS.gene032695

ATGTCGAACATAGACATTGAAGGGATCTTGAACCAACTACCAAACGATGGTCGTGTTCCTAAGACCAAAATTGTTTGTACTTTGGGTCCTGCTTCGAGATCTGTTGAGATGATTCAAAAACTTCTTAAAGCTGGCATGAATGTTGCTCGTTTCAATTTTTCACATGGTACTCATGAATATCATCAGGAAACCCTCGATAATCTCAAGTCTGCTATGCATTCTACTGGTATTCTCTGTGCCGTCATGCTCGACACCAAGGTTTGTTCTTGTTTCTATACATGCATAGCAATAGCATAGCATAGGGATCACTATATATGTTCTTGCTTGCATTGAATTTGATTTTGAGTGAATTGATTTTTGTCTAAAACTCAGTTGAACAAGTGATTTGTGTTTGGATACATTTATATAAACAATCAATTTGAGTGTAAAAATCAATTCTAGAATCAATTTTGTGTTTAATCAGGATTGTGCCCTTCAATTAACAACTTTTCAAAGCTAGTACTCAACATTTTTTATGCTTTTTTATTATTTCAATTTTTGTAAGGCCTAGCTCAATTGTCAATGTCAATATTGTTAGACAAGACATCCTCACCTGGGTTTGTACCCACAATCTCGCAGTTGTGCGTGTGATTTTCACGTTATGCTTGCCGCGTTGTCTACAGACAAAAAAATATTATTCCATCAATATCATGTTGCTGAGGATGATGTTTTATTGCTGTTTTTTTTTGTCTGTAGACAAAGTGGTAATTTAGTGATTACCACTTGAAAGTCACACAAACGACTGTAAGGTCCTAGGTTCTAACCCAGGTGAAGGTGTCAAACCTTAGAGACTATTTTATTGCTATTTTCCTTGTACAGTTATGATTCTCTTATATGTAGTGATGAATTTCTTTCTTAATGAAATTCTTAACGTTTTCATGTACGGTACATATGCTCTCTACTGTACTGTGTTTTTGCAGGGGCCTGAGATTCGGACTGGCTTTCTGAAAGATGGAAAACCTATTCAACTCAAAGAAGGACAAGAAATCACCATAACTACTGATTATGAAATCAAGGGAGATCCGGAGATGATATCAATGAGTTACAAGAAACTGCCTGTCCACTTGAAGCCTGGAAATACCATTCTATGCTCTGATGGAACAATCAGTCTCACTGTTTTGTCCTGTGATCAAGAAGCCGGTACTGTTAGATGTCGCTGTCAAAACTCTGCAATGTTGGGTGAGAGGAAAAATGTCAATCTCCCTGGTGTTGTGGTGGATCTTCCCACTCTTACTGACAAGGATAAGGAAGATATTCTTGAATGGGGTGTCCCTAACAATATTGATATGATTGCTCTTTCATTTGTTCGTAAGGGCTCTGATCTTGTTAATGTCCGCAAGGTTCTCGGGCCACATGCTAAGCATATTCAGTTGATGTCAAAGGTAGAATTTTAATTGCATTCTTCTGCAATTTTAATAATGATATAAAGGATCACCATTTCATTTGTTTGTGGTGTTAATTTTTCCCCCTTCACCATTAATGAATTGCATGTCCTTGTTGATATATCTTCTAATGCATCTTTAAGTTGAATGTAATTCATCATTTTTCTCTTCAACACAAATTCCATGATTGTCTGTTTAATATGAACAAGTACTAACTTGTGTGTTTGTGTTTCTTACACCAATTCTGAAGTCGTGCTTAATGGTTTTTAAATAATGATTTTGTGGAATTTCATTTCAAGGTTGAGAATCAGGAGGGAGTCATGAACTTTGATGAGATCCTGCGTGAGACTGATGCGTTCATGGTGGCCCGTGGTGATCTTGGAATGGAAATCCCAGTTGAGAAGATTTTCCTGGCACAGAAAATGATGATTTATAAGTGTAATCTTGTTGGCAAGCCTGTGGTGACTGCTACCCAGATGCTTGAATCCATGATCAAGTCTCCTCGGCCAACCCGAGCCGAAGCAACTGATGTAGCCAATGCAGTTCTTGATGGAACCGACTGTGTCATGCTTAGTGGTGAAAGTGCTGCTGGAGCATACCCTGAACTTGCTGTCAAAATCATGGCTCGCATTTGTGTTGAAGCAGAATCATCCCTTGATTATGGTGCTATATTCAAAGAGATGATAAGGTCTACTCCATTGCCTATGAGTCCATTGGAAAGCCTTGCATCATCTGCTGTACGCACAGCCAATAAGGCCAGAGCGAAACTCATTGTCGTGCTGACACGAGGTGGGAGTACTGCCAAGTTAGTTGCTAAGTATAGGCCAGCAGTTCCAATCTTGTCTGTGGTAGTTCCGGTTTTGACCACAGACTCATTTGATTGGACCTGCAGTGATGAGGCACCAGCAAGGCACAGCTTAATATACAGAGGCTTGATTCCTATATTGGCAGAAGGATCTGCAAGAGCTACTGATGCAGAATCTACAGATGCAATTCTGGAAGCTTCTCTTAAGTCAGCAACACAAAAGGGGCTTTGTAAACCTGGTGACGCCGTTGTTGCTCTTCATCGTATTGGAGCTGCTTCTGTTATAAAGATCTGCATAGTGAAGTGA
Protein sequence

>MS.gene032695.t1

MSNIDIEGILNQLPNDGRVPKTKIVCTLGPASRSVEMIQKLLKAGMNVARFNFSHGTHEYHQETLDNLKSAMHSTGILCAVMLDTKGPEIRTGFLKDGKPIQLKEGQEITITTDYEIKGDPEMISMSYKKLPVHLKPGNTILCSDGTISLTVLSCDQEAGTVRCRCQNSAMLGERKNVNLPGVVVDLPTLTDKDKEDILEWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKHIQLMSKVENQEGVMNFDEILRETDAFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPELAVKIMARICVEAESSLDYGAIFKEMIRSTPLPMSPLESLASSAVRTANKARAKLIVVLTRGGSTAKLVAKYRPAVPILSVVVPVLTTDSFDWTCSDEAPARHSLIYRGLIPILAEGSARATDAESTDAILEASLKSATQKGLCKPGDAVVALHRIGAASVIKICIVK