Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39213.t1 | XP_013467750.1 | 93.2 | 191 | 12 | 1 | 1 | 191 | 1 | 190 | 5.80E-94 | 353.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39213.t1 | Q8LGG8 | 25.6 | 168 | 104 | 3 | 24 | 182 | 7 | 162 | 7.3e-13 | 75.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39213.t1 | A0A072VJ06 | 93.2 | 191 | 12 | 1 | 1 | 191 | 1 | 190 | 4.1e-94 | 353.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049293 | MS.gene39213 | -0.843318 | 1.51E-58 | -1.69E-46 |
| MS.gene049580 | MS.gene39213 | 0.808475 | 3.04E-50 | -1.69E-46 |
| MS.gene050277 | MS.gene39213 | 0.810178 | 1.31E-50 | -1.69E-46 |
| MS.gene050303 | MS.gene39213 | 0.801103 | 1.05E-48 | -1.69E-46 |
| MS.gene051903 | MS.gene39213 | 0.815951 | 7.11E-52 | -1.69E-46 |
| MS.gene052302 | MS.gene39213 | 0.827783 | 1.29E-54 | -1.69E-46 |
| MS.gene052309 | MS.gene39213 | -0.830026 | 3.70E-55 | -1.69E-46 |
| MS.gene052376 | MS.gene39213 | 0.817556 | 3.10E-52 | -1.69E-46 |
| MS.gene052500 | MS.gene39213 | 0.800763 | 1.24E-48 | -1.69E-46 |
| MS.gene052818 | MS.gene39213 | -0.806285 | 8.86E-50 | -1.69E-46 |
| MS.gene052824 | MS.gene39213 | 0.804602 | 2.00E-49 | -1.69E-46 |
| MS.gene052826 | MS.gene39213 | 0.801239 | 9.89E-49 | -1.69E-46 |
| MS.gene052947 | MS.gene39213 | 0.801943 | 7.09E-49 | -1.69E-46 |
| MS.gene053294 | MS.gene39213 | 0.827592 | 1.44E-54 | -1.69E-46 |
| MS.gene053401 | MS.gene39213 | 0.825958 | 3.53E-54 | -1.69E-46 |
| MS.gene053963 | MS.gene39213 | 0.813596 | 2.36E-51 | -1.69E-46 |
| MS.gene054699 | MS.gene39213 | 0.808949 | 2.41E-50 | -1.69E-46 |
| MS.gene054946 | MS.gene39213 | -0.816354 | 5.78E-52 | -1.69E-46 |
| MS.gene05548 | MS.gene39213 | 0.861973 | 7.04E-64 | -1.69E-46 |
| MS.gene055555 | MS.gene39213 | 0.818348 | 2.05E-52 | -1.69E-46 |
| MS.gene055808 | MS.gene39213 | 0.840059 | 1.09E-57 | -1.69E-46 |
| MS.gene056091 | MS.gene39213 | 0.842147 | 3.09E-58 | -1.69E-46 |
| MS.gene056631 | MS.gene39213 | 0.809236 | 2.09E-50 | -1.69E-46 |
| MS.gene057079 | MS.gene39213 | 0.889268 | 2.82E-73 | -1.69E-46 |
| MS.gene057555 | MS.gene39213 | 0.821119 | 4.78E-53 | -1.69E-46 |
| MS.gene057705 | MS.gene39213 | 0.847696 | 9.82E-60 | -1.69E-46 |
| MS.gene05795 | MS.gene39213 | 0.808477 | 3.04E-50 | -1.69E-46 |
| MS.gene057999 | MS.gene39213 | 0.800233 | 1.59E-48 | -1.69E-46 |
| MS.gene058238 | MS.gene39213 | 0.806325 | 8.69E-50 | -1.69E-46 |
| MS.gene058498 | MS.gene39213 | 0.806596 | 7.62E-50 | -1.69E-46 |
| MS.gene05954 | MS.gene39213 | 0.804951 | 1.69E-49 | -1.69E-46 |
| MS.gene059872 | MS.gene39213 | -0.815609 | 8.47E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene017358 | MS.gene39213 | PPI |
| MS.gene39213 | MS.gene050004 | PPI |
| MS.gene39213 | MS.gene010109 | PPI |
| MS.gene26154 | MS.gene39213 | PPI |
| MS.gene009525 | MS.gene39213 | PPI |
| MS.gene39213 | MS.gene063633 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39213.t1 | MTR_1g054750 | 93.194 | 191 | 12 | 1 | 1 | 191 | 1 | 190 | 1.90e-131 | 366 |
| MS.gene39213.t1 | MTR_1g054765 | 80.226 | 177 | 29 | 4 | 21 | 191 | 1 | 177 | 2.82e-98 | 282 |
| MS.gene39213.t1 | MTR_1g083950 | 40.462 | 173 | 86 | 4 | 13 | 185 | 3 | 158 | 1.84e-34 | 120 |
| MS.gene39213.t1 | MTR_1g088640 | 37.288 | 177 | 96 | 4 | 13 | 188 | 2 | 164 | 5.95e-33 | 116 |
| MS.gene39213.t1 | MTR_1g088640 | 36.158 | 177 | 101 | 3 | 13 | 188 | 2 | 167 | 1.22e-31 | 112 |
| MS.gene39213.t1 | MTR_1g087200 | 35.088 | 171 | 94 | 5 | 17 | 184 | 2 | 158 | 2.98e-30 | 108 |
| MS.gene39213.t1 | MTR_5g065980 | 35.802 | 162 | 97 | 3 | 25 | 182 | 10 | 168 | 6.79e-29 | 106 |
| MS.gene39213.t1 | MTR_5g065980 | 35.976 | 164 | 96 | 4 | 25 | 182 | 10 | 170 | 1.17e-27 | 102 |
| MS.gene39213.t1 | MTR_7g108830 | 32.738 | 168 | 100 | 3 | 22 | 188 | 7 | 162 | 1.97e-22 | 89.0 |
| MS.gene39213.t1 | MTR_8g058620 | 32.738 | 168 | 100 | 3 | 22 | 188 | 7 | 162 | 1.97e-22 | 89.0 |
| MS.gene39213.t1 | MTR_2g034200 | 31.737 | 167 | 103 | 3 | 24 | 188 | 6 | 163 | 5.93e-19 | 80.1 |
| MS.gene39213.t1 | MTR_4g064933 | 32.738 | 168 | 88 | 4 | 24 | 182 | 6 | 157 | 1.59e-18 | 79.0 |
| MS.gene39213.t1 | MTR_5g077130 | 29.825 | 171 | 105 | 3 | 25 | 191 | 7 | 166 | 8.93e-18 | 77.0 |
| MS.gene39213.t1 | MTR_2g089350 | 30.556 | 180 | 92 | 6 | 24 | 188 | 26 | 187 | 2.08e-17 | 77.4 |
| MS.gene39213.t1 | MTR_5g077130 | 30.233 | 172 | 104 | 4 | 25 | 191 | 7 | 167 | 3.95e-17 | 75.1 |
| MS.gene39213.t1 | MTR_6g006190 | 31.959 | 97 | 66 | 0 | 86 | 182 | 66 | 162 | 3.10e-16 | 73.2 |
| MS.gene39213.t1 | MTR_6g006190 | 34.483 | 87 | 57 | 0 | 96 | 182 | 52 | 138 | 4.68e-16 | 72.0 |
| MS.gene39213.t1 | MTR_1g088620 | 48.387 | 62 | 32 | 0 | 127 | 188 | 225 | 286 | 6.31e-16 | 74.3 |
| MS.gene39213.t1 | MTR_5g065980 | 30.282 | 142 | 92 | 3 | 25 | 162 | 10 | 148 | 1.08e-15 | 72.0 |
| MS.gene39213.t1 | MTR_4g019800 | 30.625 | 160 | 96 | 4 | 27 | 182 | 9 | 157 | 3.04e-14 | 67.4 |
| MS.gene39213.t1 | MTR_7g065770 | 28.485 | 165 | 99 | 3 | 24 | 182 | 6 | 157 | 8.84e-13 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39213.t1 | AT3G11930 | 54.545 | 176 | 78 | 2 | 15 | 189 | 25 | 199 | 1.51e-68 | 207 |
| MS.gene39213.t1 | AT3G11930 | 54.802 | 177 | 77 | 3 | 15 | 189 | 25 | 200 | 2.79e-67 | 204 |
| MS.gene39213.t1 | AT3G11930 | 54.494 | 178 | 77 | 3 | 15 | 189 | 25 | 201 | 3.51e-67 | 204 |
| MS.gene39213.t1 | AT3G11930 | 47.783 | 203 | 77 | 4 | 15 | 189 | 25 | 226 | 7.99e-61 | 189 |
| MS.gene39213.t1 | AT3G58450 | 53.704 | 162 | 74 | 1 | 25 | 186 | 32 | 192 | 9.40e-59 | 183 |
| MS.gene39213.t1 | AT3G58450 | 53.086 | 162 | 68 | 3 | 25 | 186 | 32 | 185 | 6.77e-55 | 173 |
| MS.gene39213.t1 | AT1G09740 | 38.415 | 164 | 94 | 2 | 25 | 186 | 10 | 168 | 1.15e-30 | 110 |
| MS.gene39213.t1 | AT1G09740 | 38.415 | 164 | 94 | 2 | 25 | 186 | 10 | 168 | 1.15e-30 | 110 |
| MS.gene39213.t1 | AT3G62550 | 35.404 | 161 | 90 | 4 | 24 | 182 | 8 | 156 | 5.83e-26 | 98.2 |
| MS.gene39213.t1 | AT1G68300 | 32.738 | 168 | 101 | 3 | 15 | 182 | 2 | 157 | 2.57e-25 | 96.3 |
| MS.gene39213.t1 | AT2G47710 | 32.121 | 165 | 99 | 3 | 22 | 185 | 7 | 159 | 2.74e-25 | 96.3 |
| MS.gene39213.t1 | AT3G17020 | 32.298 | 161 | 99 | 2 | 24 | 182 | 8 | 160 | 5.73e-18 | 77.4 |
| MS.gene39213.t1 | AT3G01520 | 25.595 | 168 | 104 | 3 | 24 | 182 | 7 | 162 | 2.84e-17 | 75.9 |
| MS.gene39213.t1 | AT3G03270 | 31.214 | 173 | 82 | 4 | 25 | 182 | 7 | 157 | 1.58e-16 | 73.6 |
| MS.gene39213.t1 | AT5G14680 | 26.190 | 168 | 103 | 3 | 24 | 182 | 7 | 162 | 5.15e-16 | 72.4 |
| MS.gene39213.t1 | AT3G53990 | 26.190 | 168 | 99 | 3 | 27 | 185 | 9 | 160 | 1.41e-12 | 63.2 |
Find 54 sgRNAs with CRISPR-Local
Find 146 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGCATATAATTGTGGAAAA+TGG | 0.167677 | 1.2:+43097007 | None:intergenic |
| CACAATTATATGCACCCTAT+TGG | 0.247878 | 1.2:-43096999 | MS.gene39213:CDS |
| CCACCACCACCTGGTCCAAT+AGG | 0.318407 | 1.2:+43096984 | None:intergenic |
| ATTTGGTGTAGAGCATTTCT+TGG | 0.348715 | 1.2:-43095340 | MS.gene39213:intron |
| AATCATGGGTAGCCGTGGCC+TGG | 0.369904 | 1.2:-43095541 | MS.gene39213:CDS |
| AAAAGGGTGATGGAGGAAAT+AGG | 0.378001 | 1.2:-43097227 | None:intergenic |
| GCAAGTTGATCTCTTAATCA+TGG | 0.412365 | 1.2:-43095556 | MS.gene39213:CDS |
| TTATCCAGCATCTGTGGTTG+TGG | 0.413861 | 1.2:-43096672 | MS.gene39213:CDS |
| TGCATATAATTGTGGAAAAT+GGG | 0.413967 | 1.2:+43097008 | None:intergenic |
| GCCTGACAAATCATTTCCCT+TGG | 0.420407 | 1.2:+43095591 | None:intergenic |
| GTGGCCTGGGCACGCTCAAA+AGG | 0.436301 | 1.2:-43095527 | MS.gene39213:intron |
| ATCATGGGTAGCCGTGGCCT+GGG | 0.449797 | 1.2:-43095540 | MS.gene39213:CDS |
| CCCAAGGGAAATGATTTGTC+AGG | 0.453085 | 1.2:-43095592 | MS.gene39213:CDS |
| TAACTGCTGATCTTTCTTGC+TGG | 0.457940 | 1.2:+43096633 | None:intergenic |
| CACCACCACCTGGTCCAATA+GGG | 0.474544 | 1.2:+43096985 | None:intergenic |
| GCAGAAAGTGTAATTCTCAA+TGG | 0.481801 | 1.2:-43095618 | MS.gene39213:CDS |
| GAATCCACAACCACAGATGC+TGG | 0.485403 | 1.2:+43096668 | None:intergenic |
| CCTATTGGACCAGGTGGTGG+TGG | 0.487554 | 1.2:-43096984 | MS.gene39213:intron |
| AGGAACATCATCTGAAAATG+AGG | 0.493972 | 1.2:-43097057 | MS.gene39213:CDS |
| GCAAATGTGCAAGGATAAGC+AGG | 0.503833 | 1.2:-43096594 | MS.gene39213:intron |
| CCTGACAAATCATTTCCCTT+GGG | 0.505400 | 1.2:+43095592 | None:intergenic |
| TTCAGATGATGTTCCTTCCA+TGG | 0.510145 | 1.2:+43097064 | None:intergenic |
| ATCAGCAGTTATTCTTTCGC+GGG | 0.511531 | 1.2:-43096621 | MS.gene39213:CDS |
| TGGAAGTGTTGATCAAGTGA+GGG | 0.512230 | 1.2:-43097204 | MS.gene39213:CDS |
| TAAAGTTGAAGAGATTATCA+AGG | 0.517712 | 1.2:+43097093 | None:intergenic |
| AAAGAGAAGGATGAAGATGA+AGG | 0.523647 | 1.2:-43097168 | MS.gene39213:CDS |
| ATCATCTGAAAATGAGGGAA+TGG | 0.523826 | 1.2:-43097051 | MS.gene39213:CDS |
| GGTGGCTTCACAATGAGAAT+AGG | 0.526593 | 1.2:+43095280 | None:intergenic |
| CACCCTATTGGACCAGGTGG+TGG | 0.530142 | 1.2:-43096987 | MS.gene39213:CDS |
| GATCAGCAGTTATTCTTTCG+CGG | 0.533226 | 1.2:-43096622 | MS.gene39213:CDS |
| CTTCAACTTTATGACTGCCA+TGG | 0.538211 | 1.2:-43097081 | MS.gene39213:CDS |
| CAATAGGGTGCATATAATTG+TGG | 0.539598 | 1.2:+43097000 | None:intergenic |
| CTCTTAATCATGGGTAGCCG+TGG | 0.547180 | 1.2:-43095546 | MS.gene39213:CDS |
| GCGGGCTTTGCAAATGTGCA+AGG | 0.556519 | 1.2:-43096603 | MS.gene39213:CDS |
| CAAGTTGATCTCTTAATCAT+GGG | 0.558572 | 1.2:-43095555 | MS.gene39213:CDS |
| AACTTTATGACTGCCATGGA+AGG | 0.559729 | 1.2:-43097077 | MS.gene39213:CDS |
| GTGGAAGTGTTGATCAAGTG+AGG | 0.562018 | 1.2:-43097205 | MS.gene39213:CDS |
| GGAACATCATCTGAAAATGA+GGG | 0.582944 | 1.2:-43097056 | MS.gene39213:CDS |
| GAGGTGCAGAAGAAAAGAGA+AGG | 0.584561 | 1.2:-43097181 | MS.gene39213:CDS |
| AAAGTTGAAGAGATTATCAA+GGG | 0.605580 | 1.2:+43097094 | None:intergenic |
| GATGAAGATGAAGGTGATGG+TGG | 0.605709 | 1.2:-43097159 | MS.gene39213:CDS |
| TATTCTCATTGTGAAGCCAC+CGG | 0.610544 | 1.2:-43095278 | MS.gene39213:CDS |
| GGAAGTGTTGATCAAGTGAG+GGG | 0.617330 | 1.2:-43097203 | MS.gene39213:CDS |
| TAATTCTCAATGGAGACCCA+AGG | 0.620896 | 1.2:-43095608 | MS.gene39213:CDS |
| GTTGTGGATTCAGTGAAGAA+AGG | 0.627405 | 1.2:-43096656 | MS.gene39213:CDS |
| AGATACGAACCACCACCACC+TGG | 0.637770 | 1.2:+43096975 | None:intergenic |
| TATATGCACCCTATTGGACC+AGG | 0.642137 | 1.2:-43096993 | MS.gene39213:CDS |
| AAGGATGAAGATGAAGGTGA+TGG | 0.645453 | 1.2:-43097162 | MS.gene39213:CDS |
| GTGGCAATAGATGAGAGTGA+TGG | 0.658459 | 1.2:-43097140 | MS.gene39213:CDS |
| AATTCTCAATGGAGACCCAA+GGG | 0.664861 | 1.2:-43095607 | MS.gene39213:CDS |
| ATGCACCCTATTGGACCAGG+TGG | 0.672679 | 1.2:-43096990 | MS.gene39213:CDS |
| TCTCATTGTGAAGCCACCGG+AGG | 0.677993 | 1.2:-43095275 | MS.gene39213:CDS |
| AGGGTGATGGAGGAAATAGG+TGG | 0.693358 | 1.2:-43097224 | None:intergenic |
| AGTGTTGATCAAGTGAGGGG+AGG | 0.733239 | 1.2:-43097200 | MS.gene39213:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATATATAAAAAAAAAA+GGG | + | chr1.2:43097117-43097136 | None:intergenic | 0.0% |
| !! | TTAAATTAAATTAAATTAAA+TGG | - | chr1.2:43096027-43096046 | MS.gene39213:intron | 0.0% |
| !! | AAATGATAAAAATTAAAAGA+TGG | + | chr1.2:43096741-43096760 | None:intergenic | 10.0% |
| !! | TAAAAAAAGCAAAAAAATTT+GGG | - | chr1.2:43096663-43096682 | MS.gene39213:CDS | 10.0% |
| !! | ATGAATCAATTAATTAGAAA+AGG | + | chr1.2:43096531-43096550 | None:intergenic | 15.0% |
| !! | GAATTCTTAAAAAATAATCT+GGG | + | chr1.2:43096135-43096154 | None:intergenic | 15.0% |
| !! | GTAAAAAAAGCAAAAAAATT+TGG | - | chr1.2:43096662-43096681 | MS.gene39213:CDS | 15.0% |
| !!! | ATGAGAAATACTATTTTTTA+GGG | - | chr1.2:43096589-43096608 | MS.gene39213:intron | 15.0% |
| !!! | GTTAAAATTGATATTTTCAA+TGG | + | chr1.2:43096381-43096400 | None:intergenic | 15.0% |
| !!! | TATGAGAAATACTATTTTTT+AGG | - | chr1.2:43096588-43096607 | MS.gene39213:intron | 15.0% |
| !!! | TCAATTTTGAAAAACTTAAT+GGG | + | chr1.2:43096429-43096448 | None:intergenic | 15.0% |
| !!! | TTAATTTTTATCATTTGTGT+AGG | - | chr1.2:43096745-43096764 | MS.gene39213:intron | 15.0% |
| !!! | TTCAATTTTGAAAAACTTAA+TGG | + | chr1.2:43096430-43096449 | None:intergenic | 15.0% |
| !!! | TTTAAATTTTGGTTTCATTT+TGG | - | chr1.2:43097081-43097100 | MS.gene39213:CDS | 15.0% |
| !! | GGAATTCTTAAAAAATAATC+TGG | + | chr1.2:43096136-43096155 | None:intergenic | 20.0% |
| !! | GTACTTCAATATAGAAAATA+TGG | + | chr1.2:43097001-43097020 | None:intergenic | 20.0% |
| !! | TTTGTTGGAATTATTTGATA+GGG | + | chr1.2:43096358-43096377 | None:intergenic | 20.0% |
| !!! | AAGGTATAATTTGTGTTTTA+GGG | + | chr1.2:43096489-43096508 | None:intergenic | 20.0% |
| !!! | TAATTGTTTTGACAACTAAT+AGG | + | chr1.2:43096328-43096347 | None:intergenic | 20.0% |
| !!! | TGAGAAATACTATTTTTTAG+GGG | - | chr1.2:43096590-43096609 | MS.gene39213:intron | 20.0% |
| !!! | TTCTAAAGAAAGATATTCAA+AGG | + | chr1.2:43095542-43095561 | None:intergenic | 20.0% |
| ! | AAAGATATTCAAAGGAGATA+AGG | + | chr1.2:43095534-43095553 | None:intergenic | 25.0% |
| ! | AAAGTTGAAGAGATTATCAA+GGG | + | chr1.2:43095382-43095401 | None:intergenic | 25.0% |
| ! | AAATATCAAAATTGCTTGGT+CGG | + | chr1.2:43095630-43095649 | None:intergenic | 25.0% |
| ! | AATTCGCATATTCAATTCAT+TGG | + | chr1.2:43096204-43096223 | None:intergenic | 25.0% |
| ! | AGAAGACTAATAAAAGAACA+AGG | + | chr1.2:43096508-43096527 | None:intergenic | 25.0% |
| ! | GAATTATTTGATAGGGTATA+GGG | + | chr1.2:43096351-43096370 | None:intergenic | 25.0% |
| ! | GCAAAAATATCAAAATTGCT+TGG | + | chr1.2:43095634-43095653 | None:intergenic | 25.0% |
| ! | GGTGTAATTGATGAAAATAA+GGG | + | chr1.2:43096234-43096253 | None:intergenic | 25.0% |
| ! | TAAAGTTGAAGAGATTATCA+AGG | + | chr1.2:43095383-43095402 | None:intergenic | 25.0% |
| ! | TGCATATAATTGTGGAAAAT+GGG | + | chr1.2:43095468-43095487 | None:intergenic | 25.0% |
| ! | TTTGAAAAACTTAATGGGAT+GGG | + | chr1.2:43096424-43096443 | None:intergenic | 25.0% |
| !! | GTTTGTTGGAATTATTTGAT+AGG | + | chr1.2:43096359-43096378 | None:intergenic | 25.0% |
| !! | TGAGTTTGGATTTTATCAAA+GGG | - | chr1.2:43096093-43096112 | MS.gene39213:intron | 25.0% |
| !! | TTGAGTTTGGATTTTATCAA+AGG | - | chr1.2:43096092-43096111 | MS.gene39213:intron | 25.0% |
| !! | TTTTTATTGTATCTGAGTAG+AGG | + | chr1.2:43095929-43095948 | None:intergenic | 25.0% |
| !!! | AACACTCATTTTAAAACTGA+GGG | + | chr1.2:43097040-43097059 | None:intergenic | 25.0% |
| !!! | ACTATTTTTCTAGTTGCATT+AGG | - | chr1.2:43096458-43096477 | MS.gene39213:intron | 25.0% |
| !!! | CAAGGTATAATTTGTGTTTT+AGG | + | chr1.2:43096490-43096509 | None:intergenic | 25.0% |
| !!! | TAACACTCATTTTAAAACTG+AGG | + | chr1.2:43097041-43097060 | None:intergenic | 25.0% |
| !!! | TATAATTTGTGTTTTAGGGA+GGG | + | chr1.2:43096485-43096504 | None:intergenic | 25.0% |
| !!! | TGATATTTTCAATGGTTTGT+TGG | + | chr1.2:43096373-43096392 | None:intergenic | 25.0% |
| !!! | TTTTGAAAAACTTAATGGGA+TGG | + | chr1.2:43096425-43096444 | None:intergenic | 25.0% |
| AAGAAAAACAAAGCGTGTAA+TGG | + | chr1.2:43096256-43096275 | None:intergenic | 30.0% | |
| AATGGGTAATTGATCTACAA+AGG | - | chr1.2:43096289-43096308 | MS.gene39213:intron | 30.0% | |
| AGAAAAACAAAGCGTGTAAT+GGG | + | chr1.2:43096255-43096274 | None:intergenic | 30.0% | |
| ATGGGTAATTGATCTACAAA+GGG | - | chr1.2:43096290-43096309 | MS.gene39213:intron | 30.0% | |
| ATGTTCATTAATGGAATTGC+AGG | - | chr1.2:43096827-43096846 | MS.gene39213:intron | 30.0% | |
| ATTAAATGGATCACTTCAAG+TGG | - | chr1.2:43096041-43096060 | MS.gene39213:intron | 30.0% | |
| CTGGTGAAAATGTTCATTAA+TGG | - | chr1.2:43096818-43096837 | MS.gene39213:intron | 30.0% | |
| GGAATTATTTGATAGGGTAT+AGG | + | chr1.2:43096352-43096371 | None:intergenic | 30.0% | |
| GGGTGTAATTGATGAAAATA+AGG | + | chr1.2:43096235-43096254 | None:intergenic | 30.0% | |
| GTGCATATAATTGTGGAAAA+TGG | + | chr1.2:43095469-43095488 | None:intergenic | 30.0% | |
| GTTGAAGTGATAAAATAGTG+AGG | + | chr1.2:43095775-43095794 | None:intergenic | 30.0% | |
| ! | AAGCTTTTATGCTCTTAAGT+GGG | - | chr1.2:43095356-43095375 | MS.gene39213:intron | 30.0% |
| ! | ATGAACATTTTCACCAGATT+TGG | + | chr1.2:43096815-43096834 | None:intergenic | 30.0% |
| ! | ATGTTTTATCTAGCCAAATC+TGG | - | chr1.2:43096799-43096818 | MS.gene39213:intron | 30.0% |
| ! | CAAGTGGTTAATATGTTTTG+AGG | - | chr1.2:43096057-43096076 | MS.gene39213:intron | 30.0% |
| ! | TAAAACATTTTCGCCAGATT+TGG | + | chr1.2:43096787-43096806 | None:intergenic | 30.0% |
| !! | CAAGTTGATCTCTTAATCAT+GGG | - | chr1.2:43096918-43096937 | MS.gene39213:intron | 30.0% |
| !!! | ATTACACGCTTTGTTTTTCT+TGG | - | chr1.2:43096255-43096274 | MS.gene39213:intron | 30.0% |
| !!! | GTATAATTTGTGTTTTAGGG+AGG | + | chr1.2:43096486-43096505 | None:intergenic | 30.0% |
| !!! | TTTTGGTTTCATTTTGGTGA+TGG | - | chr1.2:43097087-43097106 | MS.gene39213:CDS | 30.0% |
| AAAAACTTAATGGGATGGGT+GGG | + | chr1.2:43096420-43096439 | None:intergenic | 35.0% | |
| AAAGAGAAGGATGAAGATGA+AGG | - | chr1.2:43095305-43095324 | MS.gene39213:CDS | 35.0% | |
| AGGAACATCATCTGAAAATG+AGG | - | chr1.2:43095416-43095435 | MS.gene39213:intron | 35.0% | |
| ATCATCTGAAAATGAGGGAA+TGG | - | chr1.2:43095422-43095441 | MS.gene39213:intron | 35.0% | |
| CAATAGGGTGCATATAATTG+TGG | + | chr1.2:43095476-43095495 | None:intergenic | 35.0% | |
| CACAATTATATGCACCCTAT+TGG | - | chr1.2:43095474-43095493 | MS.gene39213:intron | 35.0% | |
| CCAAATTATCTAGCCAAATC+TGG | - | chr1.2:43096771-43096790 | MS.gene39213:intron | 35.0% | |
| CCAGATTTGGCTAGATAATT+TGG | + | chr1.2:43096774-43096793 | None:intergenic | 35.0% | |
| GGAACATCATCTGAAAATGA+GGG | - | chr1.2:43095417-43095436 | MS.gene39213:intron | 35.0% | |
| TCTCATATATGTCTTGCCTT+GGG | + | chr1.2:43096575-43096594 | None:intergenic | 35.0% | |
| TCTTGGTCAAAGCAGATAAT+GGG | - | chr1.2:43096272-43096291 | MS.gene39213:intron | 35.0% | |
| TTCTCATATATGTCTTGCCT+TGG | + | chr1.2:43096576-43096595 | None:intergenic | 35.0% | |
| TTCTTGGTCAAAGCAGATAA+TGG | - | chr1.2:43096271-43096290 | MS.gene39213:intron | 35.0% | |
| ! | GAAGCTTTTATGCTCTTAAG+TGG | - | chr1.2:43095355-43095374 | MS.gene39213:intron | 35.0% |
| ! | GCAGAAAGTGTAATTCTCAA+TGG | - | chr1.2:43096855-43096874 | MS.gene39213:intron | 35.0% |
| ! | GTGCTCAAGAAATTTGAGTT+TGG | - | chr1.2:43096079-43096098 | MS.gene39213:intron | 35.0% |
| !! | ATTTGGTGTAGAGCATTTCT+TGG | - | chr1.2:43097133-43097152 | MS.gene39213:CDS | 35.0% |
| !! | GCAAGTTGATCTCTTAATCA+TGG | - | chr1.2:43096917-43096936 | MS.gene39213:intron | 35.0% |
| AACTTTATGACTGCCATGGA+AGG | - | chr1.2:43095396-43095415 | MS.gene39213:intron | 40.0% | |
| AAGGATGAAGATGAAGGTGA+TGG | - | chr1.2:43095311-43095330 | MS.gene39213:CDS | 40.0% | |
| AATTCTCAATGGAGACCCAA+GGG | - | chr1.2:43096866-43096885 | MS.gene39213:intron | 40.0% | |
| ATATATGTCTTGCCTTGGGT+GGG | + | chr1.2:43096571-43096590 | None:intergenic | 40.0% | |
| ATCAGCAGTTATTCTTTCGC+GGG | - | chr1.2:43095852-43095871 | MS.gene39213:intron | 40.0% | |
| CCTGACAAATCATTTCCCTT+GGG | + | chr1.2:43096884-43096903 | None:intergenic | 40.0% | |
| CTTCAACTTTATGACTGCCA+TGG | - | chr1.2:43095392-43095411 | MS.gene39213:intron | 40.0% | |
| GAAAAACTTAATGGGATGGG+TGG | + | chr1.2:43096421-43096440 | None:intergenic | 40.0% | |
| GAGTAGAGGAAAGCGAAATT+AGG | + | chr1.2:43095915-43095934 | None:intergenic | 40.0% | |
| GATCAGCAGTTATTCTTTCG+CGG | - | chr1.2:43095851-43095870 | MS.gene39213:intron | 40.0% | |
| GTTGTGGATTCAGTGAAGAA+AGG | - | chr1.2:43095817-43095836 | MS.gene39213:intron | 40.0% | |
| TAACTGCTGATCTTTCTTGC+TGG | + | chr1.2:43095843-43095862 | None:intergenic | 40.0% | |
| TAATTCTCAATGGAGACCCA+AGG | - | chr1.2:43096865-43096884 | MS.gene39213:intron | 40.0% | |
| TATTCTCATTGTGAAGCCAC+CGG | - | chr1.2:43097195-43097214 | MS.gene39213:CDS | 40.0% | |
| TTCAGATGATGTTCCTTCCA+TGG | + | chr1.2:43095412-43095431 | None:intergenic | 40.0% | |
| ! | AGCTTTTTATCCAGCATCTG+TGG | - | chr1.2:43095795-43095814 | MS.gene39213:intron | 40.0% |
| ! | GCACGTTGAATTGAGACTTT+TGG | - | chr1.2:43095652-43095671 | MS.gene39213:intron | 40.0% |
| !! | GGTGGGTGTGATTTTGAAAA+GGG | + | chr1.2:43096403-43096422 | None:intergenic | 40.0% |
| !! | TGGAAGTGTTGATCAAGTGA+GGG | - | chr1.2:43095269-43095288 | MS.gene39213:CDS | 40.0% |
| ATGACCACGACGCAAATAAG+TGG | - | chr1.2:43095572-43095591 | MS.gene39213:CDS | 45.0% | |
| CATATATGTCTTGCCTTGGG+TGG | + | chr1.2:43096572-43096591 | None:intergenic | 45.0% | |
| GAGGTGCAGAAGAAAAGAGA+AGG | - | chr1.2:43095292-43095311 | MS.gene39213:CDS | 45.0% | |
| GCAAATAAGTGGAGGAGTCA+GGG | - | chr1.2:43095583-43095602 | MS.gene39213:CDS | 45.0% | |
| GCAAATGTGCAAGGATAAGC+AGG | - | chr1.2:43095879-43095898 | MS.gene39213:intron | 45.0% | |
| GCCTGACAAATCATTTCCCT+TGG | + | chr1.2:43096885-43096904 | None:intergenic | 45.0% | |
| GGTGGCTTCACAATGAGAAT+AGG | + | chr1.2:43097196-43097215 | None:intergenic | 45.0% | |
| GTGGCAATAGATGAGAGTGA+TGG | - | chr1.2:43095333-43095352 | MS.gene39213:intron | 45.0% | |
| TATATGCACCCTATTGGACC+AGG | - | chr1.2:43095480-43095499 | MS.gene39213:intron | 45.0% | |
| TTAAGAAGTGAACCCACCCA+AGG | - | chr1.2:43096556-43096575 | MS.gene39213:intron | 45.0% | |
| TTATCCAGCATCTGTGGTTG+TGG | - | chr1.2:43095801-43095820 | MS.gene39213:intron | 45.0% | |
| ! | CCCAAGGGAAATGATTTGTC+AGG | - | chr1.2:43096881-43096900 | MS.gene39213:intron | 45.0% |
| ! | GATGAAGATGAAGGTGATGG+TGG | - | chr1.2:43095314-43095333 | MS.gene39213:CDS | 45.0% |
| ! | GGTGGGTTCACTTCTTAAGT+GGG | + | chr1.2:43096554-43096573 | None:intergenic | 45.0% |
| !! | GGAAGTGTTGATCAAGTGAG+GGG | - | chr1.2:43095270-43095289 | MS.gene39213:CDS | 45.0% |
| !! | GGGTGGGTGTGATTTTGAAA+AGG | + | chr1.2:43096404-43096423 | None:intergenic | 45.0% |
| !! | GTGGAAGTGTTGATCAAGTG+AGG | - | chr1.2:43095268-43095287 | MS.gene39213:CDS | 45.0% |
| !! | TGCTTTTTATGGTGCTCCTC+CGG | + | chr1.2:43097217-43097236 | None:intergenic | 45.0% |
| !! | CAAATATATATAAAAAAAAA+AGG | + | chr1.2:43097118-43097137 | None:intergenic | 5.0% |
| !!! | AAATAATTTGTTTTAAATTT+TGG | - | chr1.2:43097070-43097089 | MS.gene39213:CDS | 5.0% |
| !!! | AAGAATAAAAATTTTAAATT+TGG | + | chr1.2:43096157-43096176 | None:intergenic | 5.0% |
| !!! | CTTTTTTTTTTATATATATT+TGG | - | chr1.2:43097116-43097135 | MS.gene39213:CDS | 5.0% |
| ACCACGACGCAAATAAGTGG+AGG | - | chr1.2:43095575-43095594 | MS.gene39213:CDS | 50.0% | |
| CGCAAATAAGTGGAGGAGTC+AGG | - | chr1.2:43095582-43095601 | MS.gene39213:CDS | 50.0% | |
| CTCTTAATCATGGGTAGCCG+TGG | - | chr1.2:43096927-43096946 | MS.gene39213:intron | 50.0% | |
| CTTGGTCGGAGAATGTGATC+CGG | + | chr1.2:43095616-43095635 | None:intergenic | 50.0% | |
| GAATCCACAACCACAGATGC+TGG | + | chr1.2:43095808-43095827 | None:intergenic | 50.0% | |
| TCCTCCACTTATTTGCGTCG+TGG | + | chr1.2:43095579-43095598 | None:intergenic | 50.0% | |
| TTGGTCGGAGAATGTGATCC+GGG | + | chr1.2:43095615-43095634 | None:intergenic | 50.0% | |
| ! | GGGTGGGTTCACTTCTTAAG+TGG | + | chr1.2:43096555-43096574 | None:intergenic | 50.0% |
| ! | TTTTTATGGTGCTCCTCCGG+TGG | + | chr1.2:43097214-43097233 | None:intergenic | 50.0% |
| !! | AGTGTTGATCAAGTGAGGGG+AGG | - | chr1.2:43095273-43095292 | MS.gene39213:CDS | 50.0% |
| AGATACGAACCACCACCACC+TGG | + | chr1.2:43095501-43095520 | None:intergenic | 55.0% | |
| ATGCACCCTATTGGACCAGG+TGG | - | chr1.2:43095483-43095502 | MS.gene39213:intron | 55.0% | |
| CACCACCACCTGGTCCAATA+GGG | + | chr1.2:43095491-43095510 | None:intergenic | 55.0% | |
| GCGGGCTTTGCAAATGTGCA+AGG | - | chr1.2:43095870-43095889 | MS.gene39213:intron | 55.0% | |
| TCTCATTGTGAAGCCACCGG+AGG | - | chr1.2:43097198-43097217 | MS.gene39213:CDS | 55.0% | |
| ! | CAAACCTTTTGAGCGTGCCC+AGG | + | chr1.2:43096953-43096972 | None:intergenic | 55.0% |
| !! | GAGGAGTCAGGGTTTTGACC+CGG | - | chr1.2:43095594-43095613 | MS.gene39213:CDS | 55.0% |
| AATCATGGGTAGCCGTGGCC+TGG | - | chr1.2:43096932-43096951 | MS.gene39213:intron | 60.0% | |
| ATCATGGGTAGCCGTGGCCT+GGG | - | chr1.2:43096933-43096952 | MS.gene39213:intron | 60.0% | |
| CACCCTATTGGACCAGGTGG+TGG | - | chr1.2:43095486-43095505 | MS.gene39213:intron | 60.0% | |
| CCACCACCACCTGGTCCAAT+AGG | + | chr1.2:43095492-43095511 | None:intergenic | 60.0% | |
| ! | CCTATTGGACCAGGTGGTGG+TGG | - | chr1.2:43095489-43095508 | MS.gene39213:intron | 60.0% |
| ! | TTTTGAGCGTGCCCAGGCCA+CGG | + | chr1.2:43096947-43096966 | None:intergenic | 60.0% |
| GTGGCCTGGGCACGCTCAAA+AGG | - | chr1.2:43096946-43096965 | MS.gene39213:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 43095255 | 43097240 | 43095255 | ID=MS.gene39213 |
| chr1.2 | mRNA | 43095255 | 43097240 | 43095255 | ID=MS.gene39213.t1;Parent=MS.gene39213 |
| chr1.2 | exon | 43096985 | 43097240 | 43096985 | ID=MS.gene39213.t1.exon1;Parent=MS.gene39213.t1 |
| chr1.2 | CDS | 43096985 | 43097240 | 43096985 | ID=cds.MS.gene39213.t1;Parent=MS.gene39213.t1 |
| chr1.2 | exon | 43096595 | 43096698 | 43096595 | ID=MS.gene39213.t1.exon2;Parent=MS.gene39213.t1 |
| chr1.2 | CDS | 43096595 | 43096698 | 43096595 | ID=cds.MS.gene39213.t1;Parent=MS.gene39213.t1 |
| chr1.2 | exon | 43095528 | 43095646 | 43095528 | ID=MS.gene39213.t1.exon3;Parent=MS.gene39213.t1 |
| chr1.2 | CDS | 43095528 | 43095646 | 43095528 | ID=cds.MS.gene39213.t1;Parent=MS.gene39213.t1 |
| chr1.2 | exon | 43095255 | 43095351 | 43095255 | ID=MS.gene39213.t1.exon4;Parent=MS.gene39213.t1 |
| chr1.2 | CDS | 43095255 | 43095351 | 43095255 | ID=cds.MS.gene39213.t1;Parent=MS.gene39213.t1 |
| Gene Sequence |
| Protein sequence |
