Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene57946.t1 | XP_003610237.2 | 96.9 | 512 | 13 | 1 | 1 | 512 | 1 | 509 | 1.30E-265 | 925.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene57946.t1 | Q6KAE5 | 62.0 | 521 | 162 | 9 | 1 | 510 | 1 | 496 | 3.8e-157 | 556.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene57946.t1 | G7JEC0 | 96.9 | 512 | 13 | 1 | 1 | 512 | 1 | 509 | 9.3e-266 | 925.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene57946.t1 | MTR_4g129470 | 97.852 | 512 | 8 | 1 | 1 | 512 | 1 | 509 | 0.0 | 1030 |
MS.gene57946.t1 | MTR_4g129470 | 97.406 | 424 | 8 | 1 | 89 | 512 | 1 | 421 | 0.0 | 849 |
MS.gene57946.t1 | MTR_1g100797 | 59.057 | 403 | 150 | 4 | 7 | 401 | 1 | 396 | 1.00e-164 | 476 |
MS.gene57946.t1 | MTR_0020s0130 | 58.313 | 403 | 153 | 5 | 7 | 401 | 1 | 396 | 3.82e-161 | 468 |
MS.gene57946.t1 | MTR_1g100797 | 54.362 | 298 | 121 | 4 | 112 | 401 | 2 | 292 | 2.18e-103 | 316 |
MS.gene57946.t1 | MTR_2g096760 | 31.188 | 404 | 216 | 11 | 7 | 376 | 1 | 376 | 1.59e-41 | 154 |
MS.gene57946.t1 | MTR_4g063830 | 30.051 | 396 | 222 | 9 | 11 | 376 | 6 | 376 | 3.58e-36 | 140 |
MS.gene57946.t1 | MTR_4g021880 | 27.646 | 463 | 251 | 12 | 20 | 449 | 101 | 512 | 1.53e-32 | 130 |
MS.gene57946.t1 | MTR_4g021880 | 30.627 | 271 | 161 | 5 | 20 | 288 | 101 | 346 | 9.27e-23 | 100 |
MS.gene57946.t1 | MTR_6g027840 | 28.279 | 244 | 129 | 8 | 54 | 266 | 246 | 474 | 1.02e-15 | 80.1 |
MS.gene57946.t1 | MTR_1g089180 | 29.082 | 196 | 115 | 6 | 53 | 245 | 255 | 429 | 1.15e-14 | 76.6 |
MS.gene57946.t1 | MTR_7g031370 | 28.740 | 254 | 135 | 9 | 40 | 290 | 436 | 646 | 1.48e-13 | 73.9 |
MS.gene57946.t1 | MTR_7g031370 | 29.134 | 254 | 134 | 9 | 40 | 290 | 276 | 486 | 1.68e-13 | 73.6 |
MS.gene57946.t1 | MTR_4g092760 | 26.295 | 251 | 132 | 7 | 20 | 262 | 27 | 232 | 1.47e-12 | 70.5 |
MS.gene57946.t1 | MTR_5g043640 | 31.818 | 154 | 77 | 6 | 122 | 262 | 58 | 196 | 3.37e-12 | 67.0 |
MS.gene57946.t1 | MTR_5g077770 | 29.694 | 229 | 113 | 9 | 24 | 249 | 563 | 746 | 3.91e-12 | 69.3 |
MS.gene57946.t1 | MTR_7g100390 | 27.106 | 273 | 157 | 8 | 20 | 288 | 53 | 287 | 5.39e-12 | 68.6 |
MS.gene57946.t1 | MTR_5g019105 | 93.103 | 29 | 2 | 0 | 239 | 267 | 28 | 56 | 6.03e-12 | 61.2 |
MS.gene57946.t1 | MTR_1g115575 | 28.409 | 264 | 135 | 9 | 9 | 264 | 128 | 345 | 2.97e-11 | 66.2 |
MS.gene57946.t1 | MTR_4g116160 | 26.587 | 252 | 140 | 8 | 15 | 262 | 35 | 245 | 4.64e-11 | 65.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene57946.t1 | AT5G57740 | 65.511 | 519 | 154 | 12 | 1 | 509 | 1 | 504 | 0.0 | 632 |
MS.gene57946.t1 | AT5G07270 | 56.635 | 422 | 175 | 4 | 7 | 427 | 1 | 415 | 4.71e-164 | 475 |
MS.gene57946.t1 | AT2G28840 | 31.343 | 402 | 217 | 11 | 7 | 376 | 1 | 375 | 2.35e-36 | 140 |
MS.gene57946.t1 | AT2G28840 | 31.250 | 336 | 173 | 10 | 72 | 376 | 53 | 361 | 1.73e-26 | 112 |
MS.gene57946.t1 | AT5G14230 | 28.302 | 265 | 151 | 8 | 39 | 266 | 329 | 591 | 1.27e-15 | 80.5 |
MS.gene57946.t1 | AT5G14230 | 28.522 | 291 | 138 | 10 | 23 | 262 | 348 | 619 | 9.55e-13 | 71.2 |
MS.gene57946.t1 | AT5G14230 | 28.077 | 260 | 149 | 7 | 39 | 262 | 169 | 426 | 2.13e-15 | 79.3 |
MS.gene57946.t1 | AT5G14230 | 28.522 | 291 | 138 | 10 | 23 | 262 | 188 | 459 | 1.38e-12 | 70.5 |
MS.gene57946.t1 | AT2G31820 | 30.645 | 248 | 130 | 10 | 46 | 288 | 217 | 427 | 1.56e-14 | 77.0 |
MS.gene57946.t1 | AT3G12360 | 31.102 | 254 | 122 | 9 | 9 | 257 | 114 | 319 | 1.03e-13 | 73.9 |
MS.gene57946.t1 | AT3G12360 | 31.102 | 254 | 122 | 9 | 9 | 257 | 126 | 331 | 1.21e-13 | 73.9 |
MS.gene57946.t1 | AT3G04710 | 28.251 | 223 | 123 | 6 | 55 | 262 | 283 | 483 | 5.00e-13 | 72.0 |
MS.gene57946.t1 | AT5G02620 | 26.562 | 256 | 162 | 9 | 35 | 274 | 1 | 246 | 5.89e-13 | 71.6 |
MS.gene57946.t1 | AT5G02620 | 26.562 | 256 | 162 | 9 | 35 | 274 | 1 | 246 | 5.89e-13 | 71.6 |
MS.gene57946.t1 | AT5G02620 | 26.562 | 256 | 162 | 9 | 35 | 274 | 1 | 246 | 5.89e-13 | 71.6 |
MS.gene57946.t1 | AT3G04710 | 27.753 | 227 | 127 | 6 | 51 | 262 | 55 | 259 | 1.28e-12 | 70.5 |
MS.gene57946.t1 | AT1G07710 | 30.315 | 254 | 132 | 10 | 16 | 263 | 65 | 279 | 1.55e-12 | 70.5 |
MS.gene57946.t1 | AT1G07710 | 30.315 | 254 | 132 | 10 | 16 | 263 | 65 | 279 | 1.55e-12 | 70.5 |
MS.gene57946.t1 | AT5G02620 | 27.897 | 233 | 142 | 9 | 52 | 268 | 18 | 240 | 1.81e-12 | 70.1 |
MS.gene57946.t1 | AT5G02620 | 29.885 | 174 | 93 | 4 | 23 | 195 | 98 | 243 | 6.25e-12 | 68.6 |
MS.gene57946.t1 | AT5G02620 | 27.897 | 233 | 142 | 9 | 52 | 268 | 18 | 240 | 1.81e-12 | 70.1 |
MS.gene57946.t1 | AT5G02620 | 29.885 | 174 | 93 | 4 | 23 | 195 | 98 | 243 | 6.25e-12 | 68.6 |
MS.gene57946.t1 | AT2G03430 | 32.895 | 152 | 84 | 4 | 117 | 260 | 46 | 187 | 8.56e-12 | 65.9 |
MS.gene57946.t1 | AT1G05640 | 29.536 | 237 | 129 | 7 | 54 | 288 | 191 | 391 | 8.83e-12 | 68.2 |
MS.gene57946.t1 | AT1G05640 | 31.313 | 198 | 117 | 7 | 23 | 207 | 195 | 386 | 4.36e-11 | 65.9 |
MS.gene57946.t1 | AT3G04710 | 27.753 | 227 | 126 | 7 | 51 | 262 | 55 | 258 | 2.76e-11 | 66.2 |
MS.gene57946.t1 | AT2G14255 | 28.646 | 192 | 101 | 4 | 50 | 241 | 90 | 245 | 4.04e-11 | 65.9 |
MS.gene57946.t1 | AT5G20350 | 26.210 | 248 | 136 | 7 | 20 | 262 | 35 | 240 | 8.54e-11 | 65.1 |
MS.gene57946.t1 | AT5G60070 | 28.319 | 226 | 123 | 9 | 23 | 245 | 115 | 304 | 9.88e-11 | 64.7 |
Find 124 sgRNAs with CRISPR-Local
Find 316 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCTTGAAGGGGAAGAAAATT+TGG | 0.191675 | 8.4:+5302448 | None:intergenic |
GGAACTACTATTGATTTAAT+TGG | 0.211124 | 8.4:-5306124 | MS.gene57946:intron |
AGTCTGGTTGGGAATTCTTT+TGG | 0.215532 | 8.4:-5307455 | MS.gene57946:CDS |
TTGGATCCACGTGAAGTTAT+TGG | 0.227928 | 8.4:+5302467 | None:intergenic |
CTCCATCTGGCTGCTTTAAA+TGG | 0.243273 | 8.4:-5306484 | MS.gene57946:CDS |
AGATGTTCTGGTTCTGGTTT+TGG | 0.245396 | 8.4:-5302293 | MS.gene57946:CDS |
TACCAAGCATCCCTAACTTT+TGG | 0.247113 | 8.4:-5306423 | MS.gene57946:CDS |
TTGACAAGATGTTCTGGTTC+TGG | 0.258460 | 8.4:-5302299 | MS.gene57946:CDS |
CTTGCAAGGTATTCGACTTT+TGG | 0.271778 | 8.4:-5307344 | MS.gene57946:CDS |
TGTAATATATCCCAAAAGTT+AGG | 0.292151 | 8.4:+5306412 | None:intergenic |
CCTTGATGGTTGCTCGTTCA+TGG | 0.299512 | 8.4:-5304732 | MS.gene57946:CDS |
GAAGTTATTGGTTTGCAAAA+TGG | 0.338692 | 8.4:+5302479 | None:intergenic |
CTCAACTCTAGTCTTTGTTT+AGG | 0.346862 | 8.4:-5302386 | MS.gene57946:CDS |
AACCATTTGACAAGATGTTC+TGG | 0.351599 | 8.4:-5302305 | MS.gene57946:CDS |
GTTTGTGGAACATAGGTATA+AGG | 0.361530 | 8.4:+5302697 | None:intergenic |
AGATCCATGTGCAGTTTGTT+TGG | 0.362914 | 8.4:-5303776 | MS.gene57946:CDS |
AGCTGATGTTACTCCTTCAT+TGG | 0.369879 | 8.4:-5302363 | MS.gene57946:CDS |
TTTGGTAGTGGTCTTGTGTC+TGG | 0.372671 | 8.4:+5302590 | None:intergenic |
GGAGGGCAGTACCTCCATTC+AGG | 0.376256 | 8.4:+5306503 | None:intergenic |
GTGTATCTCTTGCTTGAGTC+TGG | 0.396912 | 8.4:-5307179 | MS.gene57946:CDS |
GTTGTCCTTTGCATTACTTT+TGG | 0.399471 | 8.4:+5302572 | None:intergenic |
TCCCACCACATGCTGCATAA+TGG | 0.401799 | 8.4:+5305266 | None:intergenic |
TGTGCAGTTGCTCTTGGACT+TGG | 0.405253 | 8.4:-5306179 | MS.gene57946:CDS |
TGAAATTTCTAAGTCTGGTT+GGG | 0.412874 | 8.4:-5307466 | MS.gene57946:CDS |
AAATGTATGGTCGCTGTAGA+AGG | 0.413383 | 8.4:-5303748 | MS.gene57946:intron |
TTAGCCGAATGCACCGAGTA+TGG | 0.414587 | 8.4:+5306461 | None:intergenic |
TGGAGGTACTGCCCTCCATC+TGG | 0.414721 | 8.4:-5306497 | MS.gene57946:CDS |
GAACATGAAATTTCTAAGTC+TGG | 0.415403 | 8.4:-5307471 | None:intergenic |
AAGCTTGCCAACATGGTCAT+TGG | 0.417509 | 8.4:-5306684 | MS.gene57946:CDS |
AAGGAACGAAATCTTCTTGA+AGG | 0.425532 | 8.4:+5302434 | None:intergenic |
AGCTTGCCAACATGGTCATT+GGG | 0.431325 | 8.4:-5306683 | MS.gene57946:CDS |
TGAAAGTGTGCAGTTGCTCT+TGG | 0.431844 | 8.4:-5306185 | MS.gene57946:CDS |
CTGAGAGAAGGAAATCATCT+TGG | 0.432039 | 8.4:-5302253 | MS.gene57946:CDS |
TTGAAGATGGACTCCCTTGA+TGG | 0.437882 | 8.4:-5304746 | MS.gene57946:intron |
ACGTGTTCAAGTGAAGTTCT+TGG | 0.438387 | 8.4:-5302524 | MS.gene57946:CDS |
CTCGTTCATGGCATAGAAGT+TGG | 0.441525 | 8.4:-5304720 | MS.gene57946:CDS |
TCTTGTTGAAGTTGAGTTTG+TGG | 0.446504 | 8.4:+5302682 | None:intergenic |
ATGAAATTTCTAAGTCTGGT+TGG | 0.447499 | 8.4:-5307467 | MS.gene57946:CDS |
GTGCAGTTGCTCTTGGACTT+GGG | 0.447704 | 8.4:-5306178 | MS.gene57946:CDS |
AGGCATCACTGCGCTGCATA+TGG | 0.449962 | 8.4:-5306227 | MS.gene57946:CDS |
ATAAGTGGAAGAGATATATA+TGG | 0.450125 | 8.4:+5304643 | None:intergenic |
CTGCATATGGCAGCATTGAA+TGG | 0.451201 | 8.4:-5306214 | MS.gene57946:CDS |
TTCAATCAATCCGTTTCTAC+AGG | 0.452780 | 8.4:-5302221 | MS.gene57946:CDS |
CTGACTGCTGAGAATGCAAA+TGG | 0.460225 | 8.4:-5305076 | MS.gene57946:CDS |
TGAACACGTGCAAAATGTTA+AGG | 0.461338 | 8.4:+5302538 | None:intergenic |
TTGCATTACTCTGCAGCTCA+TGG | 0.463642 | 8.4:-5307305 | MS.gene57946:CDS |
TTGTTTGGAAAGGAAATGTA+TGG | 0.464104 | 8.4:-5303761 | MS.gene57946:CDS |
ATGGCCATACTCGGTGCATT+CGG | 0.469289 | 8.4:-5306465 | MS.gene57946:CDS |
AAGTTGAGTTTGTGGAACAT+AGG | 0.477507 | 8.4:+5302690 | None:intergenic |
GCACATGGATCTAAGCATAT+AGG | 0.478105 | 8.4:+5303787 | None:intergenic |
CTTTCCAAACAAACTGCACA+TGG | 0.481712 | 8.4:+5303772 | None:intergenic |
AACCAGAACATCTTGTCAAA+TGG | 0.484480 | 8.4:+5302303 | None:intergenic |
CAATCCGTTTCTACAGGAAG+TGG | 0.491465 | 8.4:-5302215 | MS.gene57946:CDS |
GCATCCACTTCCTGTAGAAA+CGG | 0.494458 | 8.4:+5302211 | None:intergenic |
TCTCAGGAATTATCGTGGTC+AGG | 0.496842 | 8.4:-5307144 | MS.gene57946:intron |
GTAATATATCCCAAAAGTTA+GGG | 0.497275 | 8.4:+5306413 | None:intergenic |
TCCCAAAAGTTAGGGATGCT+TGG | 0.498090 | 8.4:+5306421 | None:intergenic |
TGTAGAAACGGATTGATTGA+AGG | 0.498824 | 8.4:+5302223 | None:intergenic |
CACAAAACAGATTACCTGAA+TGG | 0.504700 | 8.4:-5306517 | MS.gene57946:CDS |
CATGTGCAGTTTGTTTGGAA+AGG | 0.507634 | 8.4:-5303771 | MS.gene57946:CDS |
CTGGTGTTGATATTAATCTC+AGG | 0.518171 | 8.4:-5307160 | MS.gene57946:CDS |
CCAACATGGTCATTGGGAGG+TGG | 0.519366 | 8.4:-5306677 | MS.gene57946:CDS |
TTCCTAACAGAGAATGTGGC+TGG | 0.520240 | 8.4:-5303828 | MS.gene57946:intron |
GTAATTAACAAAACTTCTGA+TGG | 0.523746 | 8.4:-5306250 | MS.gene57946:CDS |
CTGCTTTAAATGGCCATACT+CGG | 0.529232 | 8.4:-5306474 | MS.gene57946:CDS |
AGCAGTCAGACTAGCACCCT+TGG | 0.529380 | 8.4:+5305090 | None:intergenic |
TCTTCAGCTATTGATTGCCA+AGG | 0.531671 | 8.4:-5305107 | MS.gene57946:intron |
CTTGTGCAAGGAACCAATGA+AGG | 0.533363 | 8.4:+5302350 | None:intergenic |
CTCCATTATGCAGCATGTGG+TGG | 0.535401 | 8.4:-5305268 | MS.gene57946:CDS |
TGAAGAGAATTGACAACTCA+AGG | 0.535842 | 8.4:+5302415 | None:intergenic |
AGAGGACAAGCTATTGAACC+TGG | 0.537680 | 8.4:+5302647 | None:intergenic |
CATTTAAAGCAGCCAGATGG+AGG | 0.538004 | 8.4:+5306485 | None:intergenic |
TCCATTATGCAGCATGTGGT+GGG | 0.544452 | 8.4:-5305267 | MS.gene57946:CDS |
AGGAACGAAATCTTCTTGAA+GGG | 0.546898 | 8.4:+5302435 | None:intergenic |
TGAGCATTGTCAAAATTGCT+AGG | 0.550320 | 8.4:-5304621 | MS.gene57946:intron |
CTAGTTTCTGCAGCAAGAGA+TGG | 0.552390 | 8.4:-5307410 | MS.gene57946:CDS |
GGAAGAGATATATATGGCGA+AGG | 0.561512 | 8.4:+5304649 | None:intergenic |
CTTCAGCTATTGATTGCCAA+GGG | 0.565183 | 8.4:-5305106 | MS.gene57946:intron |
AATATAATCCACGTCTTGCA+AGG | 0.572310 | 8.4:-5307358 | MS.gene57946:CDS |
CCATGAACGAGCAACCATCA+AGG | 0.576241 | 8.4:+5304732 | None:intergenic |
CTTCTATTAGCACTTGTGCA+AGG | 0.580799 | 8.4:+5302338 | None:intergenic |
CAAGTTCTCAAACTGAGAGA+AGG | 0.581676 | 8.4:-5302265 | MS.gene57946:CDS |
ACTATACTGTGGCGACATAG+AGG | 0.581953 | 8.4:+5302629 | None:intergenic |
TGCAAACCAATAACTTCACG+TGG | 0.583478 | 8.4:-5302473 | MS.gene57946:CDS |
AATAGTAGTTCCATCCTCTA+CGG | 0.584436 | 8.4:+5306135 | None:intergenic |
GGCCATTTAAAGCAGCCAGA+TGG | 0.585213 | 8.4:+5306482 | None:intergenic |
GTCGAATACCTTGCAAGACG+TGG | 0.585836 | 8.4:+5307350 | None:intergenic |
CATGAACGAGCAACCATCAA+GGG | 0.589970 | 8.4:+5304733 | None:intergenic |
CTTGGGAGCTTCTGTGTCCG+AGG | 0.591035 | 8.4:-5306161 | MS.gene57946:CDS |
TCCGAGGTTACCGTAGAGGA+TGG | 0.591591 | 8.4:-5306145 | MS.gene57946:CDS |
TGGTGATGTTCAAGAGGCGA+AGG | 0.592755 | 8.4:-5307390 | MS.gene57946:CDS |
TCAATTCCTAACAGAGAATG+TGG | 0.598490 | 8.4:-5303832 | MS.gene57946:intron |
TTGATGCAAGCTTGCCAACA+TGG | 0.601264 | 8.4:-5306691 | MS.gene57946:CDS |
TGCTTGGTATATAGTCTGCA+AGG | 0.603623 | 8.4:+5306437 | None:intergenic |
CACTACCAAAAGTAATGCAA+AGG | 0.606802 | 8.4:-5302577 | MS.gene57946:CDS |
ATTAACAAAACTTCTGATGG+AGG | 0.611011 | 8.4:-5306247 | MS.gene57946:CDS |
GAGGACAAGCTATTGAACCT+GGG | 0.612469 | 8.4:+5302648 | None:intergenic |
CCACCTCCCAATGACCATGT+TGG | 0.614473 | 8.4:+5306677 | None:intergenic |
TCCATCCTCTACGGTAACCT+CGG | 0.615721 | 8.4:+5306144 | None:intergenic |
GGAACGAAATCTTCTTGAAG+GGG | 0.616699 | 8.4:+5302436 | None:intergenic |
AAGAGATGGTGATGTTCAAG+AGG | 0.619180 | 8.4:-5307396 | MS.gene57946:CDS |
CAATCTCAGAATTTGATCAA+AGG | 0.622386 | 8.4:-5306372 | MS.gene57946:intron |
ATGGCATAGAAGTTGGCTTG+AGG | 0.627590 | 8.4:-5304713 | MS.gene57946:CDS |
TGTGTCCGAGGTTACCGTAG+AGG | 0.631676 | 8.4:-5306149 | MS.gene57946:CDS |
TGACTGCTGAGAATGCAAAT+GGG | 0.638673 | 8.4:-5305075 | MS.gene57946:intron |
CATACGAAGTGGTGTTTGTG+AGG | 0.641986 | 8.4:-5306272 | MS.gene57946:intron |
ATTTAAAGCAGCCAGATGGA+GGG | 0.649786 | 8.4:+5306486 | None:intergenic |
TCAACTTCAACAAGAACACA+TGG | 0.651528 | 8.4:-5302674 | MS.gene57946:CDS |
AGGACAAGCTATTGAACCTG+GGG | 0.651920 | 8.4:+5302649 | None:intergenic |
CCACTCCATTATGCAGCATG+TGG | 0.652184 | 8.4:-5305271 | MS.gene57946:CDS |
AAATGGTGTTGTCATGTCTG+TGG | 0.653781 | 8.4:+5302496 | None:intergenic |
GTGCTAATAGAAGAAACTTG+AGG | 0.655442 | 8.4:-5302328 | MS.gene57946:CDS |
TGAGCTGCAGAGTAATGCAA+AGG | 0.656866 | 8.4:+5307308 | None:intergenic |
CCACATGCTGCATAATGGAG+TGG | 0.671484 | 8.4:+5305271 | None:intergenic |
ACGTGGATTATATTCTAACA+AGG | 0.672327 | 8.4:+5307367 | None:intergenic |
TTGCCAACATGGTCATTGGG+AGG | 0.672352 | 8.4:-5306680 | MS.gene57946:CDS |
AAAACAGATTACCTGAATGG+AGG | 0.674826 | 8.4:-5306514 | MS.gene57946:CDS |
ATTAATCTCAGGAATTATCG+TGG | 0.678184 | 8.4:-5307149 | MS.gene57946:CDS |
GCAACTGCACACTTTCAACA+TGG | 0.678568 | 8.4:+5306191 | None:intergenic |
TGCAGCTCATGGCCACCATG+AGG | 0.682766 | 8.4:-5307294 | MS.gene57946:intron |
CTAACAGAGAATGTGGCTGG+AGG | 0.704497 | 8.4:-5303825 | MS.gene57946:intron |
GGACAAGCTATTGAACCTGG+GGG | 0.729015 | 8.4:+5302650 | None:intergenic |
TGTAAGTATATACCTCATGG+TGG | 0.729691 | 8.4:+5307282 | None:intergenic |
TAACAAATGAGACTATACTG+TGG | 0.749737 | 8.4:+5302618 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATTTACATATATTAAGTAAT+TGG | - | chr8.4:5306167-5306186 | MS.gene57946:CDS | 10.0% |
!! | TACTCAAATTTATATTTATT+TGG | - | chr8.4:5305393-5305412 | MS.gene57946:intron | 10.0% |
!! | AACATTTATAGAATTCAATT+AGG | - | chr8.4:5304245-5304264 | MS.gene57946:intron | 15.0% |
!! | AAGGTTATTAATTAAATGTT+AGG | + | chr8.4:5305125-5305144 | None:intergenic | 15.0% |
!! | AATATAGTAAATGTTTAGAT+TGG | + | chr8.4:5304011-5304030 | None:intergenic | 15.0% |
!! | ACATTAGAAATTATTGTTAT+TGG | - | chr8.4:5306834-5306853 | MS.gene57946:intron | 15.0% |
!! | ACATTGAAACAAAATAATAT+TGG | + | chr8.4:5302561-5302580 | None:intergenic | 15.0% |
!! | ATATAGTAAATGTTTAGATT+GGG | + | chr8.4:5304010-5304029 | None:intergenic | 15.0% |
!! | TAAAAACTTCATAATCTAAT+AGG | + | chr8.4:5305673-5305692 | None:intergenic | 15.0% |
!! | TTAATAAAATAGCACAAAAT+CGG | + | chr8.4:5303072-5303091 | None:intergenic | 15.0% |
!!! | TAAAATATTGCTTGTTAAAT+TGG | - | chr8.4:5303125-5303144 | MS.gene57946:intron | 15.0% |
!!! | TATTAAAACAATTTTTCACA+TGG | + | chr8.4:5305195-5305214 | None:intergenic | 15.0% |
!! | ACAATAATTTCTAATGTCAT+AGG | + | chr8.4:5306831-5306850 | None:intergenic | 20.0% |
!! | AGATATAGTCAACTAAATTA+AGG | + | chr8.4:5302590-5302609 | None:intergenic | 20.0% |
!! | AGCAAATAATTAGAAAGTAA+TGG | - | chr8.4:5306241-5306260 | MS.gene57946:CDS | 20.0% |
!! | ATAACTAACTTACTTTACAA+TGG | - | chr8.4:5303821-5303840 | MS.gene57946:CDS | 20.0% |
!! | ATTAAATGTTAGGAAGAAAT+TGG | + | chr8.4:5305115-5305134 | None:intergenic | 20.0% |
!! | TATAGTAAATGTTTAGATTG+GGG | + | chr8.4:5304009-5304028 | None:intergenic | 20.0% |
!! | TGAACAAATATAGCATTATT+TGG | + | chr8.4:5305644-5305663 | None:intergenic | 20.0% |
!! | TTATGATCTATTTAGATCAT+AGG | - | chr8.4:5304707-5304726 | MS.gene57946:CDS | 20.0% |
!!! | AATTTCTACTAGAGTATTTT+GGG | + | chr8.4:5306627-5306646 | None:intergenic | 20.0% |
!!! | ATATGATAAATTGATAATGC+AGG | - | chr8.4:5306926-5306945 | MS.gene57946:intron | 20.0% |
!!! | ATGTTTTTTCCATTTGTTTT+TGG | + | chr8.4:5306287-5306306 | None:intergenic | 20.0% |
!!! | ATTGGCTTTAAAAATAATCA+GGG | + | chr8.4:5303030-5303049 | None:intergenic | 20.0% |
!!! | TAGTATCGTAGAATTTTATT+CGG | + | chr8.4:5305364-5305383 | None:intergenic | 20.0% |
!!! | TATTGATTTTGTTTTGAAGA+TGG | - | chr8.4:5304916-5304935 | MS.gene57946:intron | 20.0% |
!!! | TATTTTTATTTACAGGTTCT+GGG | - | chr8.4:5304375-5304394 | MS.gene57946:intron | 20.0% |
!!! | TCAAATTTTATGTATTCCAA+AGG | - | chr8.4:5305779-5305798 | MS.gene57946:intron | 20.0% |
!!! | TGCTATCTATTTTTATTTAC+AGG | - | chr8.4:5304368-5304387 | MS.gene57946:intron | 20.0% |
! | AAAATGAAACAGTCTTCTAA+AGG | + | chr8.4:5304467-5304486 | None:intergenic | 25.0% |
! | AAAATGCTTCATGTTTAAAG+CGG | - | chr8.4:5304312-5304331 | MS.gene57946:intron | 25.0% |
! | AACTGATTATACTTTGAATG+CGG | - | chr8.4:5305313-5305332 | MS.gene57946:intron | 25.0% |
! | AAGTTAATTCTGTCTTTGAA+TGG | - | chr8.4:5303377-5303396 | MS.gene57946:intron | 25.0% |
! | AATGTGTAGAATGTAGATAA+TGG | + | chr8.4:5304117-5304136 | None:intergenic | 25.0% |
! | AATTGTAAGTATATACCTCA+TGG | + | chr8.4:5302399-5302418 | None:intergenic | 25.0% |
! | ACACTAAACCAATATTGTTA+AGG | - | chr8.4:5306791-5306810 | MS.gene57946:intron | 25.0% |
! | AGATCAAACTAGTTAACTTA+GGG | + | chr8.4:5304340-5304359 | None:intergenic | 25.0% |
! | AGATCAATAATAGTAACCTT+TGG | + | chr8.4:5305798-5305817 | None:intergenic | 25.0% |
! | ATAAGTGGAAGAGATATATA+TGG | + | chr8.4:5305035-5305054 | None:intergenic | 25.0% |
! | ATAGTAAATGTTTAGATTGG+GGG | + | chr8.4:5304008-5304027 | None:intergenic | 25.0% |
! | CATATATTAAGTAATTGGTC+AGG | - | chr8.4:5306172-5306191 | MS.gene57946:CDS | 25.0% |
! | CATCAATATTGTTCAACATT+TGG | - | chr8.4:5303760-5303779 | MS.gene57946:CDS | 25.0% |
! | GAATAAAATTCTACGATACT+AGG | - | chr8.4:5305363-5305382 | MS.gene57946:intron | 25.0% |
! | GTAAAATTATAAACCAGTAG+AGG | + | chr8.4:5306542-5306561 | None:intergenic | 25.0% |
! | GTAATATATCCCAAAAGTTA+GGG | + | chr8.4:5303265-5303284 | None:intergenic | 25.0% |
! | GTAATTAACAAAACTTCTGA+TGG | - | chr8.4:5303425-5303444 | MS.gene57946:intron | 25.0% |
! | TAAAAATAGATAGCAGTTAG+TGG | + | chr8.4:5304363-5304382 | None:intergenic | 25.0% |
! | TAACCTTTCAAGATTGATAT+TGG | - | chr8.4:5305138-5305157 | MS.gene57946:intron | 25.0% |
! | TAGATGAGTTTAGTCATTTA+AGG | - | chr8.4:5305537-5305556 | MS.gene57946:intron | 25.0% |
! | TCGTAGTAAGTTAAAAACAA+GGG | + | chr8.4:5304751-5304770 | None:intergenic | 25.0% |
! | TGAACAATATTGATGAGAAA+TGG | + | chr8.4:5303755-5303774 | None:intergenic | 25.0% |
! | TGTAATATATCCCAAAAGTT+AGG | + | chr8.4:5303266-5303285 | None:intergenic | 25.0% |
! | TTGCCAATAAAAATACAAAG+AGG | + | chr8.4:5306584-5306603 | None:intergenic | 25.0% |
!! | AGGAAGAACTTGTAAATTTT+CGG | + | chr8.4:5305009-5305028 | None:intergenic | 25.0% |
!! | ATTTTCTCTTATGTAGTACA+GGG | + | chr8.4:5304297-5304316 | None:intergenic | 25.0% |
!! | TCTACTTTGAATGTATTTTC+TGG | + | chr8.4:5306083-5306102 | None:intergenic | 25.0% |
!! | TGAGGATAAATAAACAGTTT+TGG | + | chr8.4:5304039-5304058 | None:intergenic | 25.0% |
!! | TTAGAAGACTGTTTCATTTT+AGG | - | chr8.4:5304467-5304486 | MS.gene57946:intron | 25.0% |
!! | TTGGATATGTTTTCTACAAA+TGG | - | chr8.4:5306196-5306215 | MS.gene57946:CDS | 25.0% |
!! | TTTTACATGGAAAAATGATC+TGG | - | chr8.4:5305992-5306011 | MS.gene57946:intron | 25.0% |
!!! | AGCATCATTTGATTTTAACA+AGG | - | chr8.4:5305221-5305240 | MS.gene57946:intron | 25.0% |
!!! | ATGTAGATAATGGAATATGA+TGG | + | chr8.4:5304107-5304126 | None:intergenic | 25.0% |
!!! | ATTTTGCAAGTGTTTCTATA+TGG | - | chr8.4:5306377-5306396 | MS.gene57946:CDS | 25.0% |
!!! | CAATTTCTACTAGAGTATTT+TGG | + | chr8.4:5306628-5306647 | None:intergenic | 25.0% |
!!! | CATTGGCTTTAAAAATAATC+AGG | + | chr8.4:5303031-5303050 | None:intergenic | 25.0% |
!!! | CTACCTCTTTGTATTTTTAT+TGG | - | chr8.4:5306578-5306597 | MS.gene57946:intron | 25.0% |
!!! | CTATTTTTATTTACAGGTTC+TGG | - | chr8.4:5304374-5304393 | MS.gene57946:intron | 25.0% |
!!! | CTTCAAACTTTTGTTGTTTT+GGG | - | chr8.4:5302879-5302898 | MS.gene57946:intron | 25.0% |
!!! | GGAACTACTATTGATTTAAT+TGG | - | chr8.4:5303551-5303570 | MS.gene57946:intron | 25.0% |
AAACACGATACAAGAAAATG+AGG | + | chr8.4:5302429-5302448 | None:intergenic | 30.0% | |
AACCTTTGAATCAATGGTAA+AGG | - | chr8.4:5306333-5306352 | MS.gene57946:intron | 30.0% | |
AACTTACCTTATATACAGCT+TGG | - | chr8.4:5304665-5304684 | MS.gene57946:CDS | 30.0% | |
AAGAGGTAGATGACAAAATA+TGG | + | chr8.4:5306567-5306586 | None:intergenic | 30.0% | |
AAGTTAAAAACAAGGGGTAA+AGG | + | chr8.4:5304744-5304763 | None:intergenic | 30.0% | |
AATAAAAACTGAGCAATGTC+TGG | + | chr8.4:5306435-5306454 | None:intergenic | 30.0% | |
AATGACAACCTTTGAATCAA+TGG | - | chr8.4:5306327-5306346 | MS.gene57946:intron | 30.0% | |
ACATAACTATGCTTCTTTGT+TGG | - | chr8.4:5306303-5306322 | MS.gene57946:intron | 30.0% | |
AGAGGTAGATGACAAAATAT+GGG | + | chr8.4:5306566-5306585 | None:intergenic | 30.0% | |
AGATTCACTATCTATCGTAT+TGG | - | chr8.4:5304770-5304789 | MS.gene57946:intron | 30.0% | |
ATCACTTAATCACATGAACT+AGG | + | chr8.4:5303593-5303612 | None:intergenic | 30.0% | |
ATGAAATTTCTAAGTCTGGT+TGG | - | chr8.4:5302208-5302227 | MS.gene57946:CDS | 30.0% | |
ATGTTTCTTTCGTTTACAGA+GGG | - | chr8.4:5302915-5302934 | MS.gene57946:intron | 30.0% | |
ATTAACAAAACTTCTGATGG+AGG | - | chr8.4:5303428-5303447 | MS.gene57946:intron | 30.0% | |
ATTAATCTCAGGAATTATCG+TGG | - | chr8.4:5302526-5302545 | MS.gene57946:CDS | 30.0% | |
ATTTAGAAGTAGGTGAAAGA+GGG | + | chr8.4:5304203-5304222 | None:intergenic | 30.0% | |
CAACCAATATCAATCTTGAA+AGG | + | chr8.4:5305144-5305163 | None:intergenic | 30.0% | |
CAAGCACTATGTATCTTAAA+TGG | - | chr8.4:5304870-5304889 | MS.gene57946:intron | 30.0% | |
CAATCTCAGAATTTGATCAA+AGG | - | chr8.4:5303303-5303322 | MS.gene57946:intron | 30.0% | |
CATGTGATTATGTGCATATT+TGG | - | chr8.4:5305424-5305443 | MS.gene57946:intron | 30.0% | |
CGTAGTAAGTTAAAAACAAG+GGG | + | chr8.4:5304750-5304769 | None:intergenic | 30.0% | |
CTCGTAGTAAGTTAAAAACA+AGG | + | chr8.4:5304752-5304771 | None:intergenic | 30.0% | |
CTTACTGCAACAGTTTATAA+TGG | + | chr8.4:5303360-5303379 | None:intergenic | 30.0% | |
CTTAGTAAACATTAGACAAG+AGG | + | chr8.4:5304150-5304169 | None:intergenic | 30.0% | |
GAGATCAAACTAGTTAACTT+AGG | + | chr8.4:5304341-5304360 | None:intergenic | 30.0% | |
GAGTTAGAGATCTTCAATAT+AGG | - | chr8.4:5305449-5305468 | MS.gene57946:intron | 30.0% | |
GATCAAACTAGTTAACTTAG+GGG | + | chr8.4:5304339-5304358 | None:intergenic | 30.0% | |
GTTTAGTGTTTGAATTGACA+AGG | + | chr8.4:5306780-5306799 | None:intergenic | 30.0% | |
TAACAAATGAGACTATACTG+TGG | + | chr8.4:5307060-5307079 | None:intergenic | 30.0% | |
TAACTTACTTTACAATGGCT+TGG | - | chr8.4:5303826-5303845 | MS.gene57946:intron | 30.0% | |
TACTGCTAAGATTTAGAAGT+AGG | + | chr8.4:5304213-5304232 | None:intergenic | 30.0% | |
TAGTAAATGTTTAGATTGGG+GGG | + | chr8.4:5304007-5304026 | None:intergenic | 30.0% | |
TGAAATTTCTAAGTCTGGTT+GGG | - | chr8.4:5302209-5302228 | MS.gene57946:CDS | 30.0% | |
TGGCACAATAAAATTTGTAG+TGG | - | chr8.4:5303846-5303865 | MS.gene57946:intron | 30.0% | |
TTCTATATGGAGTTATTGCA+CGG | - | chr8.4:5306390-5306409 | MS.gene57946:CDS | 30.0% | |
TTGCAAAATACGTTTCTCTA+TGG | + | chr8.4:5306366-5306385 | None:intergenic | 30.0% | |
TTGCAGTAATGATCTTACAT+TGG | + | chr8.4:5303048-5303067 | None:intergenic | 30.0% | |
TTGTTTGGAAAGGAAATGTA+TGG | - | chr8.4:5305914-5305933 | MS.gene57946:intron | 30.0% | |
! | ACGTGGATTATATTCTAACA+AGG | + | chr8.4:5302311-5302330 | None:intergenic | 30.0% |
! | CATTTTCTCTTATGTAGTAC+AGG | + | chr8.4:5304298-5304317 | None:intergenic | 30.0% |
! | GAAATTGGTTGAATTTTGAG+AGG | + | chr8.4:5305100-5305119 | None:intergenic | 30.0% |
! | GTGTACGTTTGTTAAAATCA+TGG | - | chr8.4:5303954-5303973 | MS.gene57946:intron | 30.0% |
! | TACGTTTGTTAAAATCATGG+TGG | - | chr8.4:5303957-5303976 | MS.gene57946:intron | 30.0% |
! | TATAGGTTTTGCCAATACTT+TGG | - | chr8.4:5305466-5305485 | MS.gene57946:intron | 30.0% |
! | TGCTAGATCAATGTTTTCAA+AGG | + | chr8.4:5302813-5302832 | None:intergenic | 30.0% |
! | TTATTTTCCATGAACGTGTT+TGG | - | chr8.4:5306450-5306469 | MS.gene57946:CDS | 30.0% |
! | TTTTCAAATTGTGCCTATAC+CGG | - | chr8.4:5302739-5302758 | MS.gene57946:intron | 30.0% |
! | TTTTCTCTTATGTAGTACAG+GGG | + | chr8.4:5304296-5304315 | None:intergenic | 30.0% |
!! | ATTTTGACAATGCTCATAAG+TGG | + | chr8.4:5305050-5305069 | None:intergenic | 30.0% |
!! | CTGATATAGATGGTTTTACA+TGG | - | chr8.4:5305979-5305998 | MS.gene57946:intron | 30.0% |
!! | CTTTTGGAAACTTGCATAAT+TGG | - | chr8.4:5303698-5303717 | MS.gene57946:intron | 30.0% |
!! | GAAGTTATTGGTTTGCAAAA+TGG | + | chr8.4:5307199-5307218 | None:intergenic | 30.0% |
!! | GATAATGGAATATGATGGAA+AGG | + | chr8.4:5304102-5304121 | None:intergenic | 30.0% |
!! | GTGCTTCTTCATTTTTCTTT+TGG | - | chr8.4:5303682-5303701 | MS.gene57946:intron | 30.0% |
!! | GTTATTGGCTTAAAAAGTGT+TGG | - | chr8.4:5306849-5306868 | MS.gene57946:intron | 30.0% |
!! | TTCCTTTACCATTGATTCAA+AGG | + | chr8.4:5306338-5306357 | None:intergenic | 30.0% |
!!! | GCTTCAAACTTTTGTTGTTT+TGG | - | chr8.4:5302878-5302897 | MS.gene57946:intron | 30.0% |
!!! | TTTTGGGATATATTACAGAC+AGG | - | chr8.4:5303269-5303288 | MS.gene57946:intron | 30.0% |
AAAACAGATTACCTGAATGG+AGG | - | chr8.4:5303161-5303180 | MS.gene57946:intron | 35.0% | |
AACATGCCAAGCTGTATATA+AGG | + | chr8.4:5304674-5304693 | None:intergenic | 35.0% | |
AACCAGAACATCTTGTCAAA+TGG | + | chr8.4:5307375-5307394 | None:intergenic | 35.0% | |
AACCATTTGACAAGATGTTC+TGG | - | chr8.4:5307370-5307389 | MS.gene57946:CDS | 35.0% | |
AAGGAACGAAATCTTCTTGA+AGG | + | chr8.4:5307244-5307263 | None:intergenic | 35.0% | |
AAGTTGAGTTTGTGGAACAT+AGG | + | chr8.4:5306988-5307007 | None:intergenic | 35.0% | |
AATAGTAGTTCCATCCTCTA+CGG | + | chr8.4:5303543-5303562 | None:intergenic | 35.0% | |
AATATAATCCACGTCTTGCA+AGG | - | chr8.4:5302317-5302336 | MS.gene57946:CDS | 35.0% | |
AATATTGATGAGAAATGGCC+AGG | + | chr8.4:5303750-5303769 | None:intergenic | 35.0% | |
ACACTCAATGCTGATATAGA+TGG | - | chr8.4:5305969-5305988 | MS.gene57946:intron | 35.0% | |
AGGAACGAAATCTTCTTGAA+GGG | + | chr8.4:5307243-5307262 | None:intergenic | 35.0% | |
ATAACAACATACGCAAGAAG+AGG | + | chr8.4:5305824-5305843 | None:intergenic | 35.0% | |
ATATTGATGAGAAATGGCCA+GGG | + | chr8.4:5303749-5303768 | None:intergenic | 35.0% | |
ATCTCTCCAAACCAAAGTAT+TGG | + | chr8.4:5305480-5305499 | None:intergenic | 35.0% | |
ATTAAGTAATTGGTCAGGCT+TGG | - | chr8.4:5306177-5306196 | MS.gene57946:CDS | 35.0% | |
ATTCAACTGCAACTCATGTT+TGG | - | chr8.4:5303874-5303893 | MS.gene57946:intron | 35.0% | |
CACAAAACAGATTACCTGAA+TGG | - | chr8.4:5303158-5303177 | MS.gene57946:intron | 35.0% | |
CACTACCAAAAGTAATGCAA+AGG | - | chr8.4:5307098-5307117 | MS.gene57946:intron | 35.0% | |
CATGTTTCTTTCGTTTACAG+AGG | - | chr8.4:5302914-5302933 | MS.gene57946:intron | 35.0% | |
CCAAACATGCATTGAATTGA+TGG | + | chr8.4:5306661-5306680 | None:intergenic | 35.0% | |
CCATCAATTCAATGCATGTT+TGG | - | chr8.4:5306658-5306677 | MS.gene57946:CDS | 35.0% | |
CTCTGTAAACGAAAGAAACA+TGG | + | chr8.4:5302916-5302935 | None:intergenic | 35.0% | |
GAGCAGAGTCAATAAATTCA+TGG | + | chr8.4:5305257-5305276 | None:intergenic | 35.0% | |
GATTTAGAAGTAGGTGAAAG+AGG | + | chr8.4:5304204-5304223 | None:intergenic | 35.0% | |
GGTATGACAAAATTGTGCAT+AGG | + | chr8.4:5306759-5306778 | None:intergenic | 35.0% | |
GTGCTAATAGAAGAAACTTG+AGG | - | chr8.4:5307347-5307366 | MS.gene57946:CDS | 35.0% | |
GTTCACACACCAAAAACAAA+TGG | - | chr8.4:5306275-5306294 | MS.gene57946:intron | 35.0% | |
GTTTGTGGAACATAGGTATA+AGG | + | chr8.4:5306981-5307000 | None:intergenic | 35.0% | |
TAACAACATACGCAAGAAGA+GGG | + | chr8.4:5305823-5305842 | None:intergenic | 35.0% | |
TCAACAAAATCACGTTGTCA+TGG | + | chr8.4:5306709-5306728 | None:intergenic | 35.0% | |
TCAACTTCAACAAGAACACA+TGG | - | chr8.4:5307001-5307020 | MS.gene57946:intron | 35.0% | |
TCAATTCCTAACAGAGAATG+TGG | - | chr8.4:5305843-5305862 | MS.gene57946:intron | 35.0% | |
TCTAATGTCATAGGTCTATG+AGG | + | chr8.4:5306822-5306841 | None:intergenic | 35.0% | |
TCTTGAAGGGGAAGAAAATT+TGG | + | chr8.4:5307230-5307249 | None:intergenic | 35.0% | |
TCTTGTTGAAGTTGAGTTTG+TGG | + | chr8.4:5306996-5307015 | None:intergenic | 35.0% | |
TGAACACGTGCAAAATGTTA+AGG | + | chr8.4:5307140-5307159 | None:intergenic | 35.0% | |
TGAAGAGAATTGACAACTCA+AGG | + | chr8.4:5307263-5307282 | None:intergenic | 35.0% | |
TGTAAGTATATACCTCATGG+TGG | + | chr8.4:5302396-5302415 | None:intergenic | 35.0% | |
TTCAATCAATCCGTTTCTAC+AGG | - | chr8.4:5307454-5307473 | MS.gene57946:CDS | 35.0% | |
! | AGAACTTGTAAATTTTCGGC+TGG | + | chr8.4:5305005-5305024 | None:intergenic | 35.0% |
! | AGGTGTCACCTTAACAATAT+TGG | + | chr8.4:5306802-5306821 | None:intergenic | 35.0% |
! | ATGTTTTCAAAGGCAAATCG+CGG | + | chr8.4:5302803-5302822 | None:intergenic | 35.0% |
! | CTCAACTCTAGTCTTTGTTT+AGG | - | chr8.4:5307289-5307308 | MS.gene57946:intron | 35.0% |
! | GAAAAATGAAGAAGCACACA+TGG | + | chr8.4:5303679-5303698 | None:intergenic | 35.0% |
! | GTTGTCCTTTGCATTACTTT+TGG | + | chr8.4:5307106-5307125 | None:intergenic | 35.0% |
! | GTTTTGCCAATACTTTGGTT+TGG | - | chr8.4:5305471-5305490 | MS.gene57946:intron | 35.0% |
! | TGAGCATTGTCAAAATTGCT+AGG | - | chr8.4:5305054-5305073 | MS.gene57946:intron | 35.0% |
!! | AGATACTTGCTTTGGAAAGT+CGG | - | chr8.4:5303616-5303635 | MS.gene57946:intron | 35.0% |
!! | CTGGTGTTGATATTAATCTC+AGG | - | chr8.4:5302515-5302534 | MS.gene57946:CDS | 35.0% |
!! | CTTTGCATTACTTTTGGTAG+TGG | + | chr8.4:5307100-5307119 | None:intergenic | 35.0% |
!! | TGTAGAAACGGATTGATTGA+AGG | + | chr8.4:5307455-5307474 | None:intergenic | 35.0% |
!! | TTGGTTGAATTTTGAGAGGA+TGG | + | chr8.4:5305096-5305115 | None:intergenic | 35.0% |
!!! | GTATTTTGGGTTCTAATGTG+TGG | + | chr8.4:5306614-5306633 | None:intergenic | 35.0% |
AAAAACTGAGCAATGTCTGG+TGG | + | chr8.4:5306432-5306451 | None:intergenic | 40.0% | |
AAATGTATGGTCGCTGTAGA+AGG | - | chr8.4:5305927-5305946 | MS.gene57946:intron | 40.0% | |
AATCAGTTAAATCCACCTGC+TGG | + | chr8.4:5305301-5305320 | None:intergenic | 40.0% | |
ACGTGTTCAAGTGAAGTTCT+TGG | - | chr8.4:5307151-5307170 | MS.gene57946:CDS | 40.0% | |
ACTGCAACTCATGTTTGGAT+TGG | - | chr8.4:5303879-5303898 | MS.gene57946:intron | 40.0% | |
AGCTGATGTTACTCCTTCAT+TGG | - | chr8.4:5307312-5307331 | MS.gene57946:CDS | 40.0% | |
ATGTTTACTAAGCACAGCCT+TGG | - | chr8.4:5304158-5304177 | MS.gene57946:intron | 40.0% | |
ATTGCAATGTCAAGGAAGCT+TGG | - | chr8.4:5306049-5306068 | MS.gene57946:intron | 40.0% | |
CAAGTTCTCAAACTGAGAGA+AGG | - | chr8.4:5307410-5307429 | MS.gene57946:CDS | 40.0% | |
CACAACAGATTGATGGAGTT+TGG | - | chr8.4:5302673-5302692 | MS.gene57946:CDS | 40.0% | |
CTGAGAGAAGGAAATCATCT+TGG | - | chr8.4:5307422-5307441 | MS.gene57946:CDS | 40.0% | |
CTTCTATTAGCACTTGTGCA+AGG | + | chr8.4:5307340-5307359 | None:intergenic | 40.0% | |
CTTTCCAAACAAACTGCACA+TGG | + | chr8.4:5305906-5305925 | None:intergenic | 40.0% | |
GCACATGGATCTAAGCATAT+AGG | + | chr8.4:5305891-5305910 | None:intergenic | 40.0% | |
GCTATAGCACAACAGATTGA+TGG | - | chr8.4:5302666-5302685 | MS.gene57946:CDS | 40.0% | |
GGAAACAATCGAGAGATAGT+AGG | + | chr8.4:5303652-5303671 | None:intergenic | 40.0% | |
GGAACGAAATCTTCTTGAAG+GGG | + | chr8.4:5307242-5307261 | None:intergenic | 40.0% | |
GGAAGAGATATATATGGCGA+AGG | + | chr8.4:5305029-5305048 | None:intergenic | 40.0% | |
GTGATGTCAGATACTTGCTT+TGG | - | chr8.4:5303608-5303627 | MS.gene57946:intron | 40.0% | |
GTGCAACAATTGCAATGTCA+AGG | - | chr8.4:5306041-5306060 | MS.gene57946:intron | 40.0% | |
TATCCTCATATAGCATGAGC+TGG | - | chr8.4:5304051-5304070 | MS.gene57946:intron | 40.0% | |
TGACTGCTGAGAATGCAAAT+GGG | - | chr8.4:5304600-5304619 | MS.gene57946:intron | 40.0% | |
TGAGTTTGAACAAATCACGC+TGG | - | chr8.4:5303905-5303924 | MS.gene57946:intron | 40.0% | |
TGCAAACCAATAACTTCACG+TGG | - | chr8.4:5307202-5307221 | MS.gene57946:intron | 40.0% | |
TGCTTGGTATATAGTCTGCA+AGG | + | chr8.4:5303241-5303260 | None:intergenic | 40.0% | |
TGGAAGAGAAAAGGATCACA+TGG | + | chr8.4:5306484-5306503 | None:intergenic | 40.0% | |
TTGAATGGTTGCATACGAAG+TGG | - | chr8.4:5303392-5303411 | MS.gene57946:intron | 40.0% | |
TTGGATCCACGTGAAGTTAT+TGG | + | chr8.4:5307211-5307230 | None:intergenic | 40.0% | |
TTTGACACCAAACACGTTCA+TGG | + | chr8.4:5306460-5306479 | None:intergenic | 40.0% | |
! | AAGAGATGGTGATGTTCAAG+AGG | - | chr8.4:5302279-5302298 | MS.gene57946:CDS | 40.0% |
! | ACAGCAGCTTTGGTCTTTAT+GGG | - | chr8.4:5305164-5305183 | MS.gene57946:intron | 40.0% |
! | ACCAAGCATCCCTAACTTTT+GGG | - | chr8.4:5303253-5303272 | MS.gene57946:intron | 40.0% |
! | ACTTGTAAATTTTCGGCTGG+AGG | + | chr8.4:5305002-5305021 | None:intergenic | 40.0% |
! | AGATCCATGTGCAGTTTGTT+TGG | - | chr8.4:5305899-5305918 | MS.gene57946:intron | 40.0% |
! | AGTCTGGTTGGGAATTCTTT+TGG | - | chr8.4:5302220-5302239 | MS.gene57946:CDS | 40.0% |
! | ATATTGGTTGACAGCAGCTT+TGG | - | chr8.4:5305154-5305173 | MS.gene57946:intron | 40.0% |
! | ATTTAAAGCAGCCAGATGGA+GGG | + | chr8.4:5303192-5303211 | None:intergenic | 40.0% |
! | CATGTGCAGTTTGTTTGGAA+AGG | - | chr8.4:5305904-5305923 | MS.gene57946:intron | 40.0% |
! | CTGCTTTAAATGGCCATACT+CGG | - | chr8.4:5303201-5303220 | MS.gene57946:intron | 40.0% |
! | CTTCAGCTATTGATTGCCAA+GGG | - | chr8.4:5304569-5304588 | MS.gene57946:intron | 40.0% |
! | CTTTTGGATGTTCTGCATCT+GGG | - | chr8.4:5302236-5302255 | MS.gene57946:CDS | 40.0% |
! | TACCAAGCATCCCTAACTTT+TGG | - | chr8.4:5303252-5303271 | MS.gene57946:intron | 40.0% |
! | TCTTCAGCTATTGATTGCCA+AGG | - | chr8.4:5304568-5304587 | MS.gene57946:intron | 40.0% |
! | TCTTTTGGATGTTCTGCATC+TGG | - | chr8.4:5302235-5302254 | MS.gene57946:CDS | 40.0% |
! | TGAAGAAGCACACATGGATA+TGG | + | chr8.4:5303673-5303692 | None:intergenic | 40.0% |
! | TTTTGGATGTTCTGCATCTG+GGG | - | chr8.4:5302237-5302256 | MS.gene57946:CDS | 40.0% |
!! | AAATGGTGTTGTCATGTCTG+TGG | + | chr8.4:5307182-5307201 | None:intergenic | 40.0% |
!! | CTTGCAAGGTATTCGACTTT+TGG | - | chr8.4:5302331-5302350 | MS.gene57946:CDS | 40.0% |
!! | TTGACAAGATGTTCTGGTTC+TGG | - | chr8.4:5307376-5307395 | MS.gene57946:CDS | 40.0% |
!!! | AGATGTTCTGGTTCTGGTTT+TGG | - | chr8.4:5307382-5307401 | MS.gene57946:CDS | 40.0% |
AAAAACCCACTCAGACACCA+AGG | + | chr8.4:5304178-5304197 | None:intergenic | 45.0% | |
AAGCTTGCCAACATGGTCAT+TGG | - | chr8.4:5302991-5303010 | MS.gene57946:intron | 45.0% | |
ACTATACTGTGGCGACATAG+AGG | + | chr8.4:5307049-5307068 | None:intergenic | 45.0% | |
AGAGGACAAGCTATTGAACC+TGG | + | chr8.4:5307031-5307050 | None:intergenic | 45.0% | |
AGCTTGCCAACATGGTCATT+GGG | - | chr8.4:5302992-5303011 | MS.gene57946:intron | 45.0% | |
AGGACAAGCTATTGAACCTG+GGG | + | chr8.4:5307029-5307048 | None:intergenic | 45.0% | |
CAATCCGTTTCTACAGGAAG+TGG | - | chr8.4:5307460-5307479 | MS.gene57946:CDS | 45.0% | |
CATACGAAGTGGTGTTTGTG+AGG | - | chr8.4:5303403-5303422 | MS.gene57946:intron | 45.0% | |
CATGAACGAGCAACCATCAA+GGG | + | chr8.4:5304945-5304964 | None:intergenic | 45.0% | |
CTAGTTTCTGCAGCAAGAGA+TGG | - | chr8.4:5302265-5302284 | MS.gene57946:CDS | 45.0% | |
CTCGTTCATGGCATAGAAGT+TGG | - | chr8.4:5304955-5304974 | MS.gene57946:intron | 45.0% | |
CTGACTGCTGAGAATGCAAA+TGG | - | chr8.4:5304599-5304618 | MS.gene57946:intron | 45.0% | |
CTTCCAGCTCATGCTATATG+AGG | + | chr8.4:5304057-5304076 | None:intergenic | 45.0% | |
CTTGTGCAAGGAACCAATGA+AGG | + | chr8.4:5307328-5307347 | None:intergenic | 45.0% | |
GAGGACAAGCTATTGAACCT+GGG | + | chr8.4:5307030-5307049 | None:intergenic | 45.0% | |
GCAACTGCACACTTTCAACA+TGG | + | chr8.4:5303487-5303506 | None:intergenic | 45.0% | |
GCATCCACTTCCTGTAGAAA+CGG | + | chr8.4:5307467-5307486 | None:intergenic | 45.0% | |
GTGTATCTCTTGCTTGAGTC+TGG | - | chr8.4:5302496-5302515 | MS.gene57946:CDS | 45.0% | |
TCCATTATGCAGCATGTGGT+GGG | - | chr8.4:5304408-5304427 | MS.gene57946:intron | 45.0% | |
TCCCAAAAGTTAGGGATGCT+TGG | + | chr8.4:5303257-5303276 | None:intergenic | 45.0% | |
TCTCAGGAATTATCGTGGTC+AGG | - | chr8.4:5302531-5302550 | MS.gene57946:CDS | 45.0% | |
TCTTCGACTTCAACCTCTAC+TGG | - | chr8.4:5306526-5306545 | MS.gene57946:intron | 45.0% | |
TGAGCTGCAGAGTAATGCAA+AGG | + | chr8.4:5302370-5302389 | None:intergenic | 45.0% | |
TTCCTAACAGAGAATGTGGC+TGG | - | chr8.4:5305847-5305866 | MS.gene57946:intron | 45.0% | |
TTGAACAAATCACGCTGGCA+CGG | - | chr8.4:5303910-5303929 | MS.gene57946:intron | 45.0% | |
TTGATGCAAGCTTGCCAACA+TGG | - | chr8.4:5302984-5303003 | MS.gene57946:intron | 45.0% | |
TTGCATTACTCTGCAGCTCA+TGG | - | chr8.4:5302370-5302389 | MS.gene57946:CDS | 45.0% | |
TTTAGATTGGGGGGTGAGAT+TGG | + | chr8.4:5303998-5304017 | None:intergenic | 45.0% | |
! | AGTTTGTTTGCCTTTGCGCT+GGG | + | chr8.4:5305504-5305523 | None:intergenic | 45.0% |
! | CAATGTCTGGTGGTGAGAAA+GGG | + | chr8.4:5306422-5306441 | None:intergenic | 45.0% |
! | CATTTAAAGCAGCCAGATGG+AGG | + | chr8.4:5303193-5303212 | None:intergenic | 45.0% |
! | CTCCATCTGGCTGCTTTAAA+TGG | - | chr8.4:5303191-5303210 | MS.gene57946:intron | 45.0% |
! | CTGCATATGGCAGCATTGAA+TGG | - | chr8.4:5303461-5303480 | MS.gene57946:intron | 45.0% |
! | GACAGCAGCTTTGGTCTTTA+TGG | - | chr8.4:5305163-5305182 | MS.gene57946:intron | 45.0% |
! | TGAAAGTGTGCAGTTGCTCT+TGG | - | chr8.4:5303490-5303509 | MS.gene57946:intron | 45.0% |
! | TTCGGCTGGAGGTTCTTTTA+AGG | + | chr8.4:5304991-5305010 | None:intergenic | 45.0% |
! | TTGAAGATGGACTCCCTTGA+TGG | - | chr8.4:5304929-5304948 | MS.gene57946:intron | 45.0% |
!! | ATGGCATAGAAGTTGGCTTG+AGG | - | chr8.4:5304962-5304981 | MS.gene57946:intron | 45.0% |
!! | TAGTTTGTTTGCCTTTGCGC+TGG | + | chr8.4:5305505-5305524 | None:intergenic | 45.0% |
!! | TTTGGTAGTGGTCTTGTGTC+TGG | + | chr8.4:5307088-5307107 | None:intergenic | 45.0% |
AATGGCCAGGGTGTGTATGT+AGG | + | chr8.4:5303737-5303756 | None:intergenic | 50.0% | |
AGGCAAATCGCGGAGAATAG+TGG | + | chr8.4:5302793-5302812 | None:intergenic | 50.0% | |
CCAAACCTACATACACACCC+TGG | - | chr8.4:5303729-5303748 | MS.gene57946:intron | 50.0% | |
CCACTCCATTATGCAGCATG+TGG | - | chr8.4:5304404-5304423 | MS.gene57946:intron | 50.0% | |
CCAGGGTGTGTATGTAGGTT+TGG | + | chr8.4:5303732-5303751 | None:intergenic | 50.0% | |
CCATGAACGAGCAACCATCA+AGG | + | chr8.4:5304946-5304965 | None:intergenic | 50.0% | |
CTAACAGAGAATGTGGCTGG+AGG | - | chr8.4:5305850-5305869 | MS.gene57946:intron | 50.0% | |
CTCCAGCCACATTCTCTGTT+AGG | + | chr8.4:5305852-5305871 | None:intergenic | 50.0% | |
CTCCATTATGCAGCATGTGG+TGG | - | chr8.4:5304407-5304426 | MS.gene57946:intron | 50.0% | |
GAGATTGGCAGAATCACGGA+GGG | + | chr8.4:5303983-5304002 | None:intergenic | 50.0% | |
GGACAAGCTATTGAACCTGG+GGG | + | chr8.4:5307028-5307047 | None:intergenic | 50.0% | |
GGGTGAGATTGGCAGAATCA+CGG | + | chr8.4:5303987-5304006 | None:intergenic | 50.0% | |
GTCGAATACCTTGCAAGACG+TGG | + | chr8.4:5302328-5302347 | None:intergenic | 50.0% | |
GTGCAGTTGCTCTTGGACTT+GGG | - | chr8.4:5303497-5303516 | MS.gene57946:intron | 50.0% | |
GTTTGTTTGCCTTTGCGCTG+GGG | + | chr8.4:5305503-5305522 | None:intergenic | 50.0% | |
TCCATCCTCTACGGTAACCT+CGG | + | chr8.4:5303534-5303553 | None:intergenic | 50.0% | |
TCCCACCACATGCTGCATAA+TGG | + | chr8.4:5304412-5304431 | None:intergenic | 50.0% | |
TGAGATTGGCAGAATCACGG+AGG | + | chr8.4:5303984-5304003 | None:intergenic | 50.0% | |
TGTGCAGTTGCTCTTGGACT+TGG | - | chr8.4:5303496-5303515 | MS.gene57946:intron | 50.0% | |
TTAGCCGAATGCACCGAGTA+TGG | + | chr8.4:5303217-5303236 | None:intergenic | 50.0% | |
TTGCCAACATGGTCATTGGG+AGG | - | chr8.4:5302995-5303014 | MS.gene57946:intron | 50.0% | |
! | CCACATGCTGCATAATGGAG+TGG | + | chr8.4:5304407-5304426 | None:intergenic | 50.0% |
! | CCTTGATGGTTGCTCGTTCA+TGG | - | chr8.4:5304943-5304962 | MS.gene57946:intron | 50.0% |
! | GCAATGTCTGGTGGTGAGAA+AGG | + | chr8.4:5306423-5306442 | None:intergenic | 50.0% |
! | GGCCATTTAAAGCAGCCAGA+TGG | + | chr8.4:5303196-5303215 | None:intergenic | 50.0% |
! | TGGTGATGTTCAAGAGGCGA+AGG | - | chr8.4:5302285-5302304 | MS.gene57946:CDS | 50.0% |
!! | ATGGCCATACTCGGTGCATT+CGG | - | chr8.4:5303210-5303229 | MS.gene57946:intron | 50.0% |
ACAAGAACACATGGTCCCCC+AGG | - | chr8.4:5307010-5307029 | MS.gene57946:intron | 55.0% | |
AGCAGTCAGACTAGCACCCT+TGG | + | chr8.4:5304588-5304607 | None:intergenic | 55.0% | |
AGGCATCACTGCGCTGCATA+TGG | - | chr8.4:5303448-5303467 | MS.gene57946:intron | 55.0% | |
ATACCGGCACTGTAGCGTAG+CGG | - | chr8.4:5302755-5302774 | MS.gene57946:intron | 55.0% | |
ATTCCGCTACGCTACAGTGC+CGG | + | chr8.4:5302761-5302780 | None:intergenic | 55.0% | |
CAAGTCAACTAGCAGCCAGC+AGG | - | chr8.4:5305283-5305302 | MS.gene57946:CDS | 55.0% | |
CCAACATGGTCATTGGGAGG+TGG | - | chr8.4:5302998-5303017 | MS.gene57946:intron | 55.0% | |
CCACCTCCCAATGACCATGT+TGG | + | chr8.4:5303001-5303020 | None:intergenic | 55.0% | |
TCCGAGGTTACCGTAGAGGA+TGG | - | chr8.4:5303530-5303549 | MS.gene57946:intron | 55.0% | |
TGTGTCCGAGGTTACCGTAG+AGG | - | chr8.4:5303526-5303545 | MS.gene57946:intron | 55.0% | |
!! | CACAGCCTTGGTGTCTGAGT+GGG | - | chr8.4:5304170-5304189 | MS.gene57946:intron | 55.0% |
!! | CTACGCTACAGTGCCGGTAT+AGG | + | chr8.4:5302755-5302774 | None:intergenic | 55.0% |
CTTGGGAGCTTCTGTGTCCG+AGG | - | chr8.4:5303514-5303533 | MS.gene57946:intron | 60.0% | |
GGAGGGCAGTACCTCCATTC+AGG | + | chr8.4:5303175-5303194 | None:intergenic | 60.0% | |
GTCAACTAGCAGCCAGCAGG+TGG | - | chr8.4:5305286-5305305 | MS.gene57946:CDS | 60.0% | |
TGCAGCTCATGGCCACCATG+AGG | - | chr8.4:5302381-5302400 | MS.gene57946:CDS | 60.0% | |
TGGAGAGATCCCCAGCGCAA+AGG | - | chr8.4:5305491-5305510 | MS.gene57946:intron | 60.0% | |
!! | GCACAGCCTTGGTGTCTGAG+TGG | - | chr8.4:5304169-5304188 | MS.gene57946:intron | 60.0% |
!! | TGGAGGTACTGCCCTCCATC+TGG | - | chr8.4:5303178-5303197 | MS.gene57946:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.4 | gene | 5302208 | 5307489 | 5302208 | ID=MS.gene57946 |
chr8.4 | mRNA | 5302208 | 5307489 | 5302208 | ID=MS.gene57946.t1;Parent=MS.gene57946 |
chr8.4 | exon | 5307295 | 5307489 | 5307295 | ID=MS.gene57946.t1.exon1;Parent=MS.gene57946.t1 |
chr8.4 | CDS | 5307295 | 5307489 | 5307295 | ID=cds.MS.gene57946.t1;Parent=MS.gene57946.t1 |
chr8.4 | exon | 5307145 | 5307204 | 5307145 | ID=MS.gene57946.t1.exon2;Parent=MS.gene57946.t1 |
chr8.4 | CDS | 5307145 | 5307204 | 5307145 | ID=cds.MS.gene57946.t1;Parent=MS.gene57946.t1 |
chr8.4 | exon | 5306648 | 5306719 | 5306648 | ID=MS.gene57946.t1.exon3;Parent=MS.gene57946.t1 |
chr8.4 | CDS | 5306648 | 5306719 | 5306648 | ID=cds.MS.gene57946.t1;Parent=MS.gene57946.t1 |
chr8.4 | exon | 5306373 | 5306542 | 5306373 | ID=MS.gene57946.t1.exon4;Parent=MS.gene57946.t1 |
chr8.4 | CDS | 5306373 | 5306542 | 5306373 | ID=cds.MS.gene57946.t1;Parent=MS.gene57946.t1 |
chr8.4 | exon | 5306125 | 5306285 | 5306125 | ID=MS.gene57946.t1.exon5;Parent=MS.gene57946.t1 |
chr8.4 | CDS | 5306125 | 5306285 | 5306125 | ID=cds.MS.gene57946.t1;Parent=MS.gene57946.t1 |
chr8.4 | exon | 5305249 | 5305307 | 5305249 | ID=MS.gene57946.t1.exon6;Parent=MS.gene57946.t1 |
chr8.4 | CDS | 5305249 | 5305307 | 5305249 | ID=cds.MS.gene57946.t1;Parent=MS.gene57946.t1 |
chr8.4 | exon | 5305076 | 5305122 | 5305076 | ID=MS.gene57946.t1.exon7;Parent=MS.gene57946.t1 |
chr8.4 | CDS | 5305076 | 5305122 | 5305076 | ID=cds.MS.gene57946.t1;Parent=MS.gene57946.t1 |
chr8.4 | exon | 5304622 | 5304762 | 5304622 | ID=MS.gene57946.t1.exon8;Parent=MS.gene57946.t1 |
chr8.4 | CDS | 5304622 | 5304762 | 5304622 | ID=cds.MS.gene57946.t1;Parent=MS.gene57946.t1 |
chr8.4 | exon | 5303749 | 5303840 | 5303749 | ID=MS.gene57946.t1.exon9;Parent=MS.gene57946.t1 |
chr8.4 | CDS | 5303749 | 5303840 | 5303749 | ID=cds.MS.gene57946.t1;Parent=MS.gene57946.t1 |
chr8.4 | exon | 5302208 | 5302749 | 5302208 | ID=MS.gene57946.t1.exon10;Parent=MS.gene57946.t1 |
chr8.4 | CDS | 5302208 | 5302749 | 5302208 | ID=cds.MS.gene57946.t1;Parent=MS.gene57946.t1 |
Gene Sequence |
Protein sequence |