AlfalfaGEDB | MS.gene014786

M. sativa cultivar XinJiangDaYe / MS.gene014786

KEGG: K06627
GO: GO:0005575 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0110165
PFAM: PF00134.26 PF02984.22

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene014786.t1	XP_024635368.1	95.4	481	19	1	1	481	1	478	2.20E-251	877.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene014786.t1	Q147G5	51.3	470	167	9	13	477	22	434	2.6e-107	390.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene014786.t1	G7JBQ1	95.4	481	19	1	1	481	1	478	1.6e-251	877.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene00474	MS.gene014786	PPI
MS.gene007486	MS.gene014786	PPI
MS.gene011448	MS.gene014786	PPI
MS.gene014786	MS.gene044085	PPI
MS.gene014786	MS.gene55900	PPI
MS.gene014786	MS.gene00478	PPI
MS.gene014786	MS.gene62819	PPI
MS.gene014786	MS.gene033401	PPI
MS.gene014786	MS.gene37226	PPI
MS.gene014786	MS.gene09785	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene014786.t1	MTR_3g107970	95.426	481	19	1	1	481	1	478	0.0	947
MS.gene014786.t1	MTR_1g011470	58.099	463	138	7	17	477	14	422	0.0	518
MS.gene014786.t1	MTR_2g102520	48.354	486	218	13	11	477	8	479	1.01e-130	387
MS.gene014786.t1	MTR_2g102550	44.000	475	202	7	3	469	2	420	9.68e-124	368
MS.gene014786.t1	MTR_3g088415	54.643	280	125	2	201	478	225	504	1.08e-103	319
MS.gene014786.t1	MTR_3g088405	53.704	270	123	1	200	467	227	496	3.71e-103	318
MS.gene014786.t1	MTR_1g018680	51.095	274	132	1	205	476	80	353	3.15e-91	282
MS.gene014786.t1	MTR_3g088415	58.986	217	89	0	200	416	224	440	2.11e-90	283
MS.gene014786.t1	MTR_3g102530	48.029	279	143	1	196	472	64	342	9.03e-86	268
MS.gene014786.t1	MTR_3g102510	46.212	264	142	0	209	472	67	330	8.32e-81	254

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene014786.t1	AT5G25380	51.363	477	169	10	10	477	19	441	6.39e-147	427
MS.gene014786.t1	AT5G11300	51.489	470	166	10	13	477	22	434	6.70e-147	427
MS.gene014786.t1	AT5G25380	50.420	476	169	8	10	477	19	435	1.79e-145	424
MS.gene014786.t1	AT5G25380	50.420	476	169	8	10	477	19	435	1.79e-145	424
MS.gene014786.t1	AT5G25380	50.327	459	162	7	10	461	19	418	6.31e-141	411
MS.gene014786.t1	AT1G80370	47.072	444	195	6	31	469	42	450	6.78e-129	382
MS.gene014786.t1	AT1G15570	48.463	423	187	7	62	477	52	450	4.51e-126	374
MS.gene014786.t1	AT5G11300	49.392	411	147	9	13	419	22	375	8.64e-119	355
MS.gene014786.t1	AT1G44110	55.147	272	122	0	196	467	174	445	5.09e-110	334
MS.gene014786.t1	AT5G43080	52.399	271	129	0	202	472	73	343	6.86e-100	304

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Find 94 sgRNAs with CRISPR-Local

Find 252 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCAGTTGTTCTTGCAC+TGG	0.503437	3.1:+85738747	MS.gene014786:CDS
AAACACAGGCTCCAGTTGCT+TGG	0.536048	3.1:+85737448	MS.gene014786:CDS
AACAGTGACTGCACCGGTTT+TGG	0.269524	3.1:-85739506	None:intergenic
AACATGGTCACTTATGTTGT+TGG	0.450701	3.1:-85736216	None:intergenic
AACCAAAGTTACTGCAGCAA+TGG	0.556672	3.1:-85736168	None:intergenic
AACTTTGTTGTATATATCAG+GGG	0.581055	3.1:-85736627	None:intergenic
AAGACCATCAACCAATTACA+TGG	0.561852	3.1:+85736996	MS.gene014786:CDS
AAGAGCAACAGCTTCCAAAA+AGG	0.433513	3.1:+85735131	MS.gene014786:CDS
AAGCAAAATTCTTCCACTCG+AGG	0.634099	3.1:-85737873	None:intergenic
AATAAACCTTTGTTTGGACT+TGG	0.425078	3.1:-85736299	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACATTGGTCAACTGAAAAA+AGG	-	chr3.1:85738862-85738881	None:intergenic	30.0%
AAGAATAGAGCAGAATCATT+AGG	+	chr3.1:85736919-85736938	MS.gene014786:intron	30.0%
AAGATTGTCCAATAGTTAAG+AGG	+	chr3.1:85735861-85735880	MS.gene014786:intron	30.0%
ACTATGAACTAAGGATATCT+AGG	+	chr3.1:85737583-85737602	MS.gene014786:intron	30.0%
ACTTACATACCCAAATTTGA+AGG	-	chr3.1:85735655-85735674	None:intergenic	30.0%
AGAATTGTCTACCATAAAGA+TGG	+	chr3.1:85736130-85736149	MS.gene014786:CDS	30.0%
AGACAACATGACAGTAATTA+TGG	-	chr3.1:85736492-85736511	None:intergenic	30.0%
AGGTCTTCTTCCTAATTATA+TGG	-	chr3.1:85735344-85735363	None:intergenic	30.0%
ATCTTAGACCGAATGATATT+GGG	-	chr3.1:85737805-85737824	None:intergenic	30.0%
CAAAAGATGTTTCCTCTAAA+GGG	-	chr3.1:85739348-85739367	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.1	gene	85735021	85739544	85735021	ID=MS.gene014786
chr3.1	mRNA	85735021	85739544	85735021	ID=MS.gene014786.t1;Parent=MS.gene014786
chr3.1	exon	85735021	85735287	85735021	ID=MS.gene014786.t1.exon1;Parent=MS.gene014786.t1
chr3.1	CDS	85735021	85735287	85735021	ID=cds.MS.gene014786.t1;Parent=MS.gene014786.t1
chr3.1	exon	85736032	85736314	85736032	ID=MS.gene014786.t1.exon2;Parent=MS.gene014786.t1
chr3.1	CDS	85736032	85736314	85736032	ID=cds.MS.gene014786.t1;Parent=MS.gene014786.t1
chr3.1	exon	85736528	85736661	85736528	ID=MS.gene014786.t1.exon3;Parent=MS.gene014786.t1
chr3.1	CDS	85736528	85736661	85736528	ID=cds.MS.gene014786.t1;Parent=MS.gene014786.t1
chr3.1	exon	85736988	85737080	85736988	ID=MS.gene014786.t1.exon4;Parent=MS.gene014786.t1
chr3.1	CDS	85736988	85737080	85736988	ID=cds.MS.gene014786.t1;Parent=MS.gene014786.t1
chr3.1	exon	85737361	85737494	85737361	ID=MS.gene014786.t1.exon5;Parent=MS.gene014786.t1
chr3.1	CDS	85737361	85737494	85737361	ID=cds.MS.gene014786.t1;Parent=MS.gene014786.t1
chr3.1	exon	85737851	85738003	85737851	ID=MS.gene014786.t1.exon6;Parent=MS.gene014786.t1
chr3.1	CDS	85737851	85738003	85737851	ID=cds.MS.gene014786.t1;Parent=MS.gene014786.t1
chr3.1	exon	85738095	85738128	85738095	ID=MS.gene014786.t1.exon7;Parent=MS.gene014786.t1
chr3.1	CDS	85738095	85738128	85738095	ID=cds.MS.gene014786.t1;Parent=MS.gene014786.t1
chr3.1	exon	85738467	85738616	85738467	ID=MS.gene014786.t1.exon8;Parent=MS.gene014786.t1
chr3.1	CDS	85738467	85738616	85738467	ID=cds.MS.gene014786.t1;Parent=MS.gene014786.t1
chr3.1	exon	85738703	85738837	85738703	ID=MS.gene014786.t1.exon9;Parent=MS.gene014786.t1
chr3.1	CDS	85738703	85738837	85738703	ID=cds.MS.gene014786.t1;Parent=MS.gene014786.t1
chr3.1	exon	85739482	85739544	85739482	ID=MS.gene014786.t1.exon10;Parent=MS.gene014786.t1
chr3.1	CDS	85739482	85739544	85739482	ID=cds.MS.gene014786.t1;Parent=MS.gene014786.t1

Gene Sequence

>MS.gene014786

ATGAGTAAAGCAAATAGTACATTGTGTGCCAAAGATGAAGAGCGTCCACTCAGAATTACCAGATCAAGGGCAAAGGTTTTGGGAGGACCCTCTTCGGAAAATGAAGGGAAAAGAGCAACAGCTTCCAAAAAGGTTGTTTCTTCTGAGAATAAAACATGTGTTGCTGTTCCTGATGTTCCTCACCGTAAAAGAAGGGCAGGGCTTACTGATGTAACTAACATCACTGCAAAACCACATGATAAACGTGTTAAACAATCCAATTTTCAGGTATAAATCCCAATTTTGTCACGAAATTCATGTTTTAAATTATATCAATATCACCATATAATTAGGAAGAAGACCTAAAAACTATCAGAAAGATTTGAAATTAATGAGTTGGACTAAAATATGGTTTATGATAGAATAGAACATTATGGCGTAATTTGATCCTGGTAGCCGACCCCACTTAGTGGAAAAAAGCTTGGCTGTTTGTTATCACCATATCATTAGGAAATGATAGTTTTTTTTTTTTTTTTACAAACATGCAGATTGATCTATCTAGGTAATTGGAATGAAAAATTATTAGTGTCATATATGCCATAAAATAAAATGTACCAATTGAACTTGGTCTAGCAAACTCTTAATAGATTTGCCTTCAAATTTGGGTATGTAAGTCAGCTGAAATTGCTAGAGGGGTTTAGTACCCAAAACATAAAATTTTCATTACACAGCTATAAGACTTGCAATGTTATATGAAAGATACAAAATGCTCTCAATTTTATATAAATTGTAGAATCTCATCTTAGGTGGTAGAGACATGTGTGGAAGCAGAGACCCTAGTAAAGAGAGTAGGTTAGACGAAAGATTGTCCAATAGTTAAGAGGTGAAGAGAACTATTGCAAATAACTCACAACAGATCGAAATAGTTTGTTTTTAGACATGATTCACAATAGAACACTATGACATAATTGTTACTTAGTAGAAAACTTTGTTGCTGTGATTGTTAATGCCGATTAGTTATCCATTTTACAGGCCAAAGGAGTTTACCAAAAGAAAAACACAAAGCTAACTTCAGATGTCTCCATTGAAGTTTCATCAGCACAAGAGGATGTTAAAGAGAAGGTAGCTGAAGAATTGTCTACCATAAAGATGGTAGAGTCAAAAGACACCATTGCTGCAGTAACTTTGGTTGATGAACCAACTGAACATTGTATGTCCAACAACATAAGTGACCATGTTATGACAGACACCACACTTTCAATGCAAGAATGTGTGAACTCTGGTGAACTCGCTACCTCTCCAAGTCCAAACAAAGGTTTATTTCAATAATCTCATATATTTTACTACTAGTATAAAACATGTTTTAGGTATATAATACCATATGCTAAATTGCAATGTCATAAGATTGCCCTTTGGATAATATAAAAAAAGTTACTAGGTGTAAGCCACTAACTCACTAGAAAGATAAAATATCTTAGAAGTTTGGATACCATAATTACTGTCATGTTGTCTTGATTGTATTGTGCAGACATAAATATGATTTGTGAGAAGGTAGGAGCCTCGGATCGCCTGACCTTTGTAGACATCGATAAAAAGTTAAAGGATTCTCAAATTTGGAGTGCTTATGCCCCTGATATATACAACAAAGTTCGAGTCACCGAGGTTTGTCCGTAATTCATTATTAAACAATCTTATGCTGCACATCTCAACTGCTTCTGCTTTCTTCTTTGTCATAATCTGACTGCATTATTATTATTATTACTTTATAATAGGGTTCTTCAGTTTTAGAGTATAACTTTCAATGTAAGCAAGTATTCTAGGATAGCCAGGAGCATATTTCATTTTGCAATATTTTATATTATTATAATGTCAGTTTTGCTGCATAAGAGAACATTCCAAAGTAATCCTATTTTTGTACTAAGAATAGAGCAGAATCATTAGGTTCACTACAAAAACATTGATGATAAGTTTTGGTGAAATCTCTTCAGCTTGAGAAAAGACCATCAACCAATTACATGGAGAAGTTGCAGCAAGATATTTCTCCAAGCATGCGTGGAATTCTGATTGATTGGCTTGTGGAGGTCAGTCTTGTGGCATTGGCTTCGTGTACATTTATATATTTGAGCAATCTTTAGCTTTTCCTTTTTGTCCATAACCTTATCAAAGAATTCTCATCTACCGCCTTTCAATCAAAAACATAGTTGAATGATAGGATATATACAATGTGATGGATAACTACAACTCTTTATGATGATCAGGTTATAGTTGCATTTGAAATGGAGAATCCTTAATTACAGTTTGTTGAAGTTTACCATCAAGCTTTTGTTGTGGCTTTGCTAAAGGTGTCCTATTCCTTTTCAGGTTTCTGAGGAATATAAGCTGGTTCCAGACACTCTTTACCTTACTGTGAACCTCATTGATCGGTTTCTCTCAACAAGTTTGATTCAGAAACACAGGCTCCAGTTGCTTGGTGTTACTTGCATGTTCATTGCATCGTAAGTACTATTTTTTTGTAATGGTCCTGGTTAACATAAGTTCCCGTTGCTCAGAGTTAGAATTCTAGATGATATGTCTTCTTTTTGAACTATGAACTAAGGATATCTAGGCTTTCAAAATGATAAAGCAGATAATGTCAATCACCTTTCGATCCTCAGTTTACTGTGGAGATGATAATTATTTTCCAAAATGCTACTTTTCTCTTTAACTTGTATTTGTTGATTATTCATGAATCATTTAATCCGAATGCATTTGGTGATAGTTACAAGTGATTATCTATTATCTAAGATACCATGTATGTTTTTTCCCAATATCATTCGGTCTAAGATGCACTTCTTTTCTTCATGGCTTAAAGAAAATATGAAGAGATGTGTGCTCCTCGAGTGGAAGAATTTTGCTTCATCACAGATAATACATACACAAAAGAAGAGGTAGTAAAAATGGAGAAGGAAGTTTTAAACCTTCTGCGTTTTCAGTTATCTGTTCCCACAACCAAAACATTTCTCAGGTATGTAGTGTACTGTTTATTTATTAACACTTTGTTAGAAAATACTACTTAAAACTTCATTGAACTAAGTTGATCTATTATTGTCTTTCAGGAGATTCATCCAAGCAGCACAATCTTCTTACAAGGTACTATAGTTGTTATCCACTATCTACAATTTAACTTATTATGTGTTTGGTTTCGTGGTAGAGATAACCAAAAGTGGTTCTAGACACAAAATGGATTTTGACATGTTTGATGGATGTCAGTTGTAATTGATTTTTATTTTTTTTTGCCTCAAGAAGTGATTCTAACCAAAAGCTAGGATTTATAGCTTTTGACTCTAAATGTGATTTTTACATACAAATTTGCTGTTCAACTTACGTCTAGAATCGATTTTTGACATTGCAAAATCAAACACGCTGGATTATTTTATGCTGACAGGAAAAATGCAACTCAATGCGTTAAACTTTATCTTGTTATACAGGTTCCTCTTGCTGAACTGGAATTCCTGGCAAATTATTTAGCAGAGCTCGCTCTTGTTGAATACAGCTTCTTACAGTTTCTACCTTCTCGTGTGGCTGCTTCTGCTGTATTCCTTGCCAGATGGACCCTCAACCACTCAGAACATCCATGGGTATGAAATGTTGACTAGTATCAAGTTACCTTTGTTTAGAAGATATAAATAGAAATTTGAAGAGTCGCATGCATTTATATATGCAGACTACAACTCTGGAGCATTTTACCAACTACAAAGCTTCAGAGCTAAAACCAGTTGTTCTTGCACTGGAAGATCTGCAACTTAATACCAAAGGTTGTTCTCTCCATGCTATACGTGAGAAATATAAACATGAGAAGGTTAGAATAACAAACTCTTATCCTTTTTTCAGTTGACCAATGTTTTAAATCCACTAGTCACACCGAAAATGCTACTCCATCGGTGCCTTTTTATAAGCATCTTTGACACTTTTCACATATATTAAGAAAAGTTGATAGTGTGATTGATGTATATTCTGTGTATGACTATCACTAAATTGTCCATTATAATTAGTAGTATTAATTTGAGATATATTTTAAAAATAACAAAAATCTATCTAGTAGTTTGAAAGATGACTTACATTCAGGGACACTTTTTTCTCTCCAAATAGTGCTTATAAATAGGAACAGAGATAGTATATAGGAGCAGCAATAGCAATACACTCTTTTTAATTCCAACATTCTCAATTATTGAGTGAAATTCATGTAAGTTTCGTCATTTTAAAAATAAGTCTCGCATAAAGTGATGAGACACATGAATTTCACTAAAAGAGTAATGAAAAGAGAGTGCTAGACCGTGTGTACAAGTACTTCTCCAGTTGTATTGTACCCTTTAGAGGAAACATCTTTTGCATCTGATTGAGGTTCATAAACCGGCAAAATAATATGCTGTCCTATCCATAGCTTTATTGAAAAAAAAGGTATATACATAATTACACAAAATTGACTTTTGCTTCATGTGACAGTTCAATGGTGTGGCAAAACTGTCTCCAAAACCGGTGCAGTCACTGTTCCAGGCTCAAGTGTAA

Protein sequence

>MS.gene014786.t1

MSKANSTLCAKDEERPLRITRSRAKVLGGPSSENEGKRATASKKVVSSENKTCVAVPDVPHRKRRAGLTDVTNITAKPHDKRVKQSNFQAKGVYQKKNTKLTSDVSIEVSSAQEDVKEKVAEELSTIKMVESKDTIAAVTLVDEPTEHCMSNNISDHVMTDTTLSMQECVNSGELATSPSPNKDINMICEKVGASDRLTFVDIDKKLKDSQIWSAYAPDIYNKVRVTELEKRPSTNYMEKLQQDISPSMRGILIDWLVEVSEEYKLVPDTLYLTVNLIDRFLSTSLIQKHRLQLLGVTCMFIASKYEEMCAPRVEEFCFITDNTYTKEEVVKMEKEVLNLLRFQLSVPTTKTFLRRFIQAAQSSYKVPLAELEFLANYLAELALVEYSFLQFLPSRVAASAVFLARWTLNHSEHPWTTTLEHFTNYKASELKPVVLALEDLQLNTKGCSLHAIREKYKHEKFNGVAKLSPKPVQSLFQAQV