Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36273.t1 | XP_024632991.1 | 93.4 | 485 | 31 | 1 | 1 | 484 | 1 | 485 | 1.70E-251 | 878.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36273.t1 | Q9C968 | 51.1 | 470 | 200 | 6 | 16 | 484 | 19 | 459 | 5.4e-113 | 409.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36273.t1 | A0A396JJH2 | 93.4 | 485 | 31 | 1 | 1 | 484 | 1 | 485 | 1.2e-251 | 878.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051896 | MS.gene36273 | 0.815933 | 7.17E-52 | -1.69E-46 |
| MS.gene051914 | MS.gene36273 | 0.831581 | 1.54E-55 | -1.69E-46 |
| MS.gene052308 | MS.gene36273 | 0.830999 | 2.14E-55 | -1.69E-46 |
| MS.gene054593 | MS.gene36273 | 0.801183 | 1.02E-48 | -1.69E-46 |
| MS.gene054633 | MS.gene36273 | 0.805029 | 1.63E-49 | -1.69E-46 |
| MS.gene054850 | MS.gene36273 | 0.811332 | 7.38E-51 | -1.69E-46 |
| MS.gene055308 | MS.gene36273 | 0.805905 | 1.07E-49 | -1.69E-46 |
| MS.gene055578 | MS.gene36273 | 0.828675 | 7.88E-55 | -1.69E-46 |
| MS.gene056041 | MS.gene36273 | 0.806732 | 7.13E-50 | -1.69E-46 |
| MS.gene05640 | MS.gene36273 | 0.807784 | 4.27E-50 | -1.69E-46 |
| MS.gene056528 | MS.gene36273 | 0.827004 | 1.99E-54 | -1.69E-46 |
| MS.gene05652 | MS.gene36273 | 0.831209 | 1.90E-55 | -1.69E-46 |
| MS.gene057669 | MS.gene36273 | 0.810488 | 1.12E-50 | -1.69E-46 |
| MS.gene058128 | MS.gene36273 | 0.849948 | 2.33E-60 | -1.69E-46 |
| MS.gene058789 | MS.gene36273 | 0.827121 | 1.86E-54 | -1.69E-46 |
| MS.gene058853 | MS.gene36273 | 0.826451 | 2.69E-54 | -1.69E-46 |
| MS.gene059616 | MS.gene36273 | 0.855921 | 4.56E-62 | -1.69E-46 |
| MS.gene061099 | MS.gene36273 | 0.80428 | 2.33E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene36273 | MS.gene23970 | PPI |
| MS.gene36273 | MS.gene71482 | PPI |
| MS.gene36273 | MS.gene067144 | PPI |
| MS.gene36273 | MS.gene036055 | PPI |
| MS.gene36273 | MS.gene021632 | PPI |
| MS.gene36273 | MS.gene014786 | PPI |
| MS.gene36273 | MS.gene015942 | PPI |
| MS.gene36273 | MS.gene89575 | PPI |
| MS.gene36273 | MS.gene072954 | PPI |
| MS.gene36273 | MS.gene072963 | PPI |
| MS.gene36273 | MS.gene067143 | PPI |
| MS.gene36273 | MS.gene072952 | PPI |
| MS.gene038078 | MS.gene36273 | PPI |
| MS.gene36273 | MS.gene072956 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36273.t1 | MTR_2g102520 | 92.371 | 485 | 30 | 2 | 1 | 484 | 1 | 479 | 0.0 | 916 |
| MS.gene36273.t1 | MTR_2g102550 | 66.874 | 483 | 101 | 6 | 3 | 484 | 5 | 429 | 0.0 | 602 |
| MS.gene36273.t1 | MTR_3g107970 | 46.973 | 479 | 223 | 11 | 15 | 484 | 18 | 474 | 5.88e-128 | 380 |
| MS.gene36273.t1 | MTR_1g011470 | 59.589 | 292 | 116 | 2 | 193 | 484 | 133 | 422 | 6.38e-116 | 347 |
| MS.gene36273.t1 | MTR_3g088415 | 51.178 | 297 | 141 | 2 | 191 | 484 | 207 | 502 | 2.19e-98 | 305 |
| MS.gene36273.t1 | MTR_1g018680 | 50.373 | 268 | 130 | 2 | 212 | 477 | 82 | 348 | 2.13e-88 | 275 |
| MS.gene36273.t1 | MTR_3g088405 | 46.595 | 279 | 148 | 1 | 200 | 477 | 222 | 500 | 9.91e-88 | 278 |
| MS.gene36273.t1 | MTR_3g088415 | 53.846 | 234 | 105 | 1 | 191 | 421 | 207 | 440 | 2.52e-85 | 270 |
| MS.gene36273.t1 | MTR_3g102530 | 44.561 | 285 | 154 | 3 | 203 | 484 | 66 | 349 | 9.89e-75 | 239 |
| MS.gene36273.t1 | MTR_3g102520 | 43.860 | 285 | 156 | 3 | 203 | 484 | 73 | 356 | 6.14e-73 | 235 |
| MS.gene36273.t1 | MTR_3g102510 | 44.891 | 274 | 149 | 2 | 212 | 484 | 65 | 337 | 4.96e-72 | 232 |
| MS.gene36273.t1 | MTR_3g102560 | 48.425 | 254 | 123 | 4 | 226 | 477 | 69 | 316 | 3.33e-67 | 219 |
| MS.gene36273.t1 | MTR_3g102540 | 48.047 | 256 | 122 | 5 | 225 | 477 | 13 | 260 | 1.72e-66 | 215 |
| MS.gene36273.t1 | MTR_3g088415 | 55.249 | 181 | 78 | 1 | 191 | 368 | 207 | 387 | 1.21e-65 | 217 |
| MS.gene36273.t1 | MTR_5g088980 | 37.857 | 280 | 164 | 7 | 205 | 482 | 148 | 419 | 1.36e-51 | 181 |
| MS.gene36273.t1 | MTR_5g023790 | 39.918 | 243 | 137 | 5 | 195 | 436 | 146 | 380 | 1.21e-50 | 177 |
| MS.gene36273.t1 | MTR_5g023790 | 36.918 | 279 | 166 | 6 | 195 | 472 | 146 | 415 | 3.01e-50 | 177 |
| MS.gene36273.t1 | MTR_7g089080 | 35.333 | 300 | 173 | 8 | 200 | 483 | 177 | 471 | 2.06e-46 | 174 |
| MS.gene36273.t1 | MTR_8g074000 | 34.944 | 269 | 166 | 5 | 205 | 472 | 159 | 419 | 2.98e-45 | 164 |
| MS.gene36273.t1 | MTR_5g023790 | 42.135 | 178 | 100 | 3 | 195 | 371 | 146 | 321 | 1.36e-39 | 147 |
| MS.gene36273.t1 | MTR_3g060410 | 33.854 | 192 | 118 | 5 | 250 | 436 | 131 | 318 | 9.71e-23 | 99.8 |
| MS.gene36273.t1 | MTR_3g060770 | 30.568 | 229 | 143 | 7 | 254 | 472 | 60 | 282 | 1.11e-21 | 95.5 |
| MS.gene36273.t1 | MTR_3g061680 | 34.043 | 188 | 115 | 6 | 254 | 436 | 50 | 233 | 1.30e-20 | 92.0 |
| MS.gene36273.t1 | MTR_3g060820 | 31.915 | 188 | 119 | 5 | 254 | 436 | 50 | 233 | 9.06e-20 | 89.7 |
| MS.gene36273.t1 | MTR_3g060400 | 30.729 | 192 | 124 | 5 | 250 | 436 | 52 | 239 | 1.29e-19 | 89.4 |
| MS.gene36273.t1 | MTR_3g460990 | 30.729 | 192 | 124 | 5 | 250 | 436 | 52 | 239 | 1.29e-19 | 89.4 |
| MS.gene36273.t1 | MTR_1g032850 | 35.326 | 184 | 102 | 6 | 241 | 419 | 364 | 535 | 1.36e-17 | 85.9 |
| MS.gene36273.t1 | MTR_5g011900 | 29.252 | 147 | 101 | 2 | 247 | 392 | 95 | 239 | 3.96e-12 | 66.6 |
| MS.gene36273.t1 | MTR_5g044040 | 36.000 | 75 | 48 | 0 | 276 | 350 | 7 | 81 | 2.72e-11 | 61.2 |
| MS.gene36273.t1 | MTR_6g045270 | 27.234 | 235 | 136 | 8 | 255 | 468 | 75 | 295 | 5.24e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36273.t1 | AT1G80370 | 51.592 | 471 | 196 | 8 | 16 | 484 | 19 | 459 | 1.31e-149 | 435 |
| MS.gene36273.t1 | AT1G15570 | 50.103 | 487 | 194 | 15 | 8 | 484 | 3 | 450 | 1.98e-146 | 426 |
| MS.gene36273.t1 | AT5G11300 | 64.286 | 280 | 99 | 1 | 205 | 484 | 156 | 434 | 2.80e-129 | 382 |
| MS.gene36273.t1 | AT5G25380 | 46.300 | 473 | 193 | 7 | 15 | 484 | 27 | 441 | 1.03e-128 | 381 |
| MS.gene36273.t1 | AT5G25380 | 63.066 | 287 | 105 | 1 | 198 | 484 | 150 | 435 | 1.04e-126 | 376 |
| MS.gene36273.t1 | AT5G25380 | 63.066 | 287 | 105 | 1 | 198 | 484 | 150 | 435 | 1.04e-126 | 376 |
| MS.gene36273.t1 | AT5G25380 | 64.207 | 271 | 96 | 1 | 198 | 468 | 150 | 419 | 1.08e-121 | 362 |
| MS.gene36273.t1 | AT5G11300 | 67.742 | 217 | 70 | 0 | 205 | 421 | 156 | 372 | 3.66e-103 | 315 |
| MS.gene36273.t1 | AT1G44110 | 48.814 | 295 | 149 | 2 | 190 | 484 | 164 | 456 | 2.59e-96 | 298 |
| MS.gene36273.t1 | AT5G43080 | 50.714 | 280 | 136 | 2 | 206 | 484 | 72 | 350 | 3.20e-95 | 292 |
| MS.gene36273.t1 | AT1G77390 | 52.593 | 270 | 125 | 2 | 204 | 472 | 161 | 428 | 5.23e-94 | 292 |
| MS.gene36273.t1 | AT1G47210 | 49.645 | 282 | 138 | 3 | 206 | 484 | 87 | 367 | 9.03e-94 | 289 |
| MS.gene36273.t1 | AT5G43080 | 51.071 | 280 | 130 | 3 | 206 | 484 | 72 | 345 | 1.53e-93 | 288 |
| MS.gene36273.t1 | AT1G47230 | 48.905 | 274 | 136 | 3 | 214 | 484 | 88 | 360 | 4.91e-89 | 277 |
| MS.gene36273.t1 | AT1G47230 | 48.727 | 275 | 136 | 4 | 214 | 484 | 88 | 361 | 3.08e-87 | 272 |
| MS.gene36273.t1 | AT1G47220 | 48.339 | 271 | 137 | 2 | 206 | 474 | 41 | 310 | 1.03e-84 | 264 |
| MS.gene36273.t1 | AT5G06150 | 36.201 | 279 | 168 | 5 | 203 | 480 | 163 | 432 | 3.09e-50 | 177 |
| MS.gene36273.t1 | AT4G37490 | 35.915 | 284 | 168 | 8 | 205 | 482 | 148 | 423 | 5.04e-46 | 166 |
| MS.gene36273.t1 | AT1G76310 | 36.042 | 283 | 170 | 7 | 197 | 477 | 152 | 425 | 7.52e-46 | 166 |
| MS.gene36273.t1 | AT1G20610 | 35.740 | 277 | 166 | 8 | 195 | 468 | 149 | 416 | 8.25e-46 | 165 |
| MS.gene36273.t1 | AT1G76310 | 38.819 | 237 | 136 | 5 | 197 | 431 | 152 | 381 | 4.81e-45 | 162 |
| MS.gene36273.t1 | AT3G11520 | 34.237 | 295 | 182 | 5 | 189 | 480 | 124 | 409 | 1.13e-44 | 162 |
| MS.gene36273.t1 | AT3G11520 | 36.047 | 258 | 154 | 4 | 189 | 443 | 124 | 373 | 6.75e-44 | 159 |
| MS.gene36273.t1 | AT2G26760 | 36.496 | 274 | 164 | 7 | 205 | 476 | 113 | 378 | 2.90e-43 | 157 |
| MS.gene36273.t1 | AT2G17620 | 35.395 | 291 | 171 | 7 | 195 | 480 | 144 | 422 | 4.22e-41 | 152 |
| MS.gene36273.t1 | AT1G76310 | 32.797 | 311 | 170 | 8 | 197 | 477 | 152 | 453 | 5.03e-40 | 150 |
| MS.gene36273.t1 | AT4G35620 | 36.059 | 269 | 163 | 5 | 205 | 472 | 155 | 415 | 5.14e-40 | 149 |
| MS.gene36273.t1 | AT1G16330 | 38.158 | 228 | 133 | 4 | 211 | 437 | 384 | 604 | 4.12e-39 | 150 |
| MS.gene36273.t1 | AT4G35620 | 38.627 | 233 | 135 | 4 | 205 | 436 | 155 | 380 | 2.89e-38 | 144 |
| MS.gene36273.t1 | AT1G47210 | 55.660 | 106 | 45 | 1 | 206 | 309 | 87 | 192 | 3.60e-35 | 130 |
| MS.gene36273.t1 | AT1G76310 | 40.113 | 177 | 103 | 3 | 197 | 371 | 152 | 327 | 3.23e-34 | 132 |
| MS.gene36273.t1 | AT5G06150 | 37.427 | 171 | 104 | 2 | 199 | 368 | 159 | 327 | 1.71e-33 | 129 |
| MS.gene36273.t1 | AT1G20590 | 37.107 | 159 | 94 | 2 | 280 | 438 | 63 | 215 | 3.12e-28 | 113 |
| MS.gene36273.t1 | AT1G14750 | 36.970 | 165 | 94 | 5 | 250 | 410 | 214 | 372 | 2.88e-18 | 87.4 |
| MS.gene36273.t1 | AT1G14750 | 36.970 | 165 | 94 | 5 | 250 | 410 | 382 | 540 | 3.91e-18 | 87.8 |
| MS.gene36273.t1 | AT1G14750 | 36.970 | 165 | 94 | 5 | 250 | 410 | 382 | 540 | 5.52e-18 | 87.4 |
| MS.gene36273.t1 | AT1G14750 | 36.970 | 165 | 93 | 6 | 250 | 410 | 214 | 371 | 4.00e-17 | 83.6 |
| MS.gene36273.t1 | AT1G34460 | 26.984 | 189 | 113 | 4 | 179 | 366 | 228 | 392 | 7.63e-17 | 83.6 |
| MS.gene36273.t1 | AT1G34460 | 26.984 | 189 | 113 | 4 | 179 | 366 | 228 | 392 | 7.63e-17 | 83.6 |
| MS.gene36273.t1 | AT1G34460 | 27.368 | 190 | 114 | 4 | 179 | 366 | 228 | 395 | 9.74e-17 | 83.2 |
| MS.gene36273.t1 | AT1G34460 | 27.368 | 190 | 114 | 4 | 179 | 366 | 214 | 381 | 1.03e-16 | 82.8 |
| MS.gene36273.t1 | AT1G34460 | 27.368 | 190 | 114 | 4 | 179 | 366 | 228 | 395 | 1.05e-16 | 83.2 |
| MS.gene36273.t1 | AT1G34460 | 27.368 | 190 | 114 | 4 | 179 | 366 | 228 | 395 | 1.10e-16 | 82.8 |
| MS.gene36273.t1 | AT1G34460 | 27.368 | 190 | 114 | 4 | 179 | 366 | 228 | 395 | 1.10e-16 | 82.8 |
| MS.gene36273.t1 | AT1G34460 | 27.368 | 190 | 114 | 4 | 179 | 366 | 228 | 395 | 1.10e-16 | 82.8 |
| MS.gene36273.t1 | AT1G34460 | 27.368 | 190 | 114 | 4 | 179 | 366 | 228 | 395 | 1.10e-16 | 82.8 |
Find 0 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAACAGAAGTATAAATTA+AGG | - | 15221:4974-4993 | MS.gene36273:intergenic | 15.0% |
| !! | AAAAAATGACTTTAGTTAGT+TGG | + | 15221:3099-3118 | MS.gene36273:intron | 20.0% |
| !! | AACTAATATAATACACATCA+AGG | - | 15221:3795-3814 | MS.gene36273:intergenic | 20.0% |
| !! | AGTTATGTTACAAAGTAAAT+AGG | - | 15221:5220-5239 | MS.gene36273:intergenic | 20.0% |
| !! | ATGAGCATTATTAAACATAA+TGG | - | 15221:4041-4060 | MS.gene36273:intergenic | 20.0% |
| !! | TAGTCATTAGATTTCATTTA+GGG | + | 15221:4315-4334 | MS.gene36273:intron | 20.0% |
| !! | TTTCTTTGAGTAATTTCATA+AGG | - | 15221:4945-4964 | MS.gene36273:intergenic | 20.0% |
| !!! | CATATTTTTGTAAAGACTAT+TGG | - | 15221:4561-4580 | MS.gene36273:intergenic | 20.0% |
| !!! | CTCTTTTTCAATACAATTTT+TGG | - | 15221:3939-3958 | MS.gene36273:intergenic | 20.0% |
| ! | AAATGAAATCTAATGACTAG+AGG | - | 15221:4314-4333 | MS.gene36273:intergenic | 25.0% |
| ! | ACAATGTACTACAAAAATAG+AGG | - | 15221:3026-3045 | MS.gene36273:intergenic | 25.0% |
| ! | ATATCTTCCTCATAAAAAGA+GGG | + | 15221:2535-2554 | MS.gene36273:CDS | 25.0% |
| ! | CAATTATCTTAGTACATTCT+TGG | + | 15221:4602-4621 | MS.gene36273:intron | 25.0% |
| ! | CTAGTCATTAGATTTCATTT+AGG | + | 15221:4314-4333 | MS.gene36273:intron | 25.0% |
| ! | TTTGAGTAATTTCATAAGGA+AGG | - | 15221:4941-4960 | MS.gene36273:intergenic | 25.0% |
| !! | ATTAAACATAATGGAACACA+AGG | - | 15221:4032-4051 | MS.gene36273:intergenic | 25.0% |
| !! | TCTTGAACAGATTTCTTTTA+TGG | - | 15221:3070-3089 | MS.gene36273:intergenic | 25.0% |
| !! | TTAAACATAATGGAACACAA+GGG | - | 15221:4031-4050 | MS.gene36273:intergenic | 25.0% |
| !! | TTTTTGTAAAGACTATTGGA+CGG | - | 15221:4557-4576 | MS.gene36273:intergenic | 25.0% |
| !!! | AACTTAGTTGTGGTTATTTT+TGG | + | 15221:3125-3144 | MS.gene36273:intron | 25.0% |
| !!! | TATTCAATGTATTGATTGAC+AGG | + | 15221:4430-4449 | MS.gene36273:intron | 25.0% |
| AACTTGGAAGTTTGAATATG+CGG | - | 15221:3636-3655 | MS.gene36273:intergenic | 30.0% | |
| AGAAATGCTCAATACAAATC+TGG | - | 15221:4714-4733 | MS.gene36273:intergenic | 30.0% | |
| AGATAACACATACACAAAAG+AGG | + | 15221:4138-4157 | MS.gene36273:CDS | 30.0% | |
| CATATCTTCCTCATAAAAAG+AGG | + | 15221:2534-2553 | MS.gene36273:CDS | 30.0% | |
| CTTAAATCCAACTGAAATTC+AGG | + | 15221:2610-2629 | MS.gene36273:CDS | 30.0% | |
| GACAAACAGCTTAGAATAAA+AGG | - | 15221:3464-3483 | MS.gene36273:intergenic | 30.0% | |
| TCAACCTAATGTTTCAAATG+AGG | + | 15221:2776-2795 | MS.gene36273:CDS | 30.0% | |
| TCATATTGTTCAGCAAAACT+TGG | - | 15221:3652-3671 | MS.gene36273:intergenic | 30.0% | |
| TGTACTAAGATAATTGCAAG+AGG | - | 15221:4598-4617 | MS.gene36273:intergenic | 30.0% | |
| ! | AACATTGTTTCAAGCAGTTT+TGG | - | 15221:5317-5336 | MS.gene36273:intergenic | 30.0% |
| ! | AGCAAATAGTTGATATGAAG+AGG | - | 15221:4486-4505 | MS.gene36273:intergenic | 30.0% |
| ! | AGGTAACATTTCTGAACTTT+TGG | + | 15221:3179-3198 | MS.gene36273:CDS | 30.0% |
| ! | TAAACATAATGGAACACAAG+GGG | - | 15221:4030-4049 | MS.gene36273:intergenic | 30.0% |
| ! | TGAAACTGCTCTTTTTGAAT+TGG | - | 15221:2507-2526 | MS.gene36273:intergenic | 30.0% |
| ! | TGATTATTACTAAAGTGCCA+AGG | + | 15221:4204-4223 | MS.gene36273:intron | 30.0% |
| !! | AAACAAGAAGCATCAGATAT+TGG | - | 15221:2646-2665 | MS.gene36273:intergenic | 30.0% |
| !! | ATATCTGATGCTTCTTGTTT+TGG | + | 15221:2646-2665 | MS.gene36273:intron | 30.0% |
| !! | CTCTGCATGTTTTATTCAAT+TGG | - | 15221:4746-4765 | MS.gene36273:intergenic | 30.0% |
| !! | TCTTTTTGAATTGGCTCTTA+GGG | - | 15221:2498-2517 | MS.gene36273:intergenic | 30.0% |
| !! | TGAAATGTATTGATGGATTC+AGG | + | 15221:2672-2691 | MS.gene36273:intron | 30.0% |
| !! | TTGGTCTTGAAATGTATTGA+TGG | + | 15221:2665-2684 | MS.gene36273:intron | 30.0% |
| AAGACAAGGTATGTCAGAAA+GGG | + | 15221:5137-5156 | MS.gene36273:intron | 35.0% | |
| AATACAAATCTGGCATGTCA+TGG | - | 15221:4704-4723 | MS.gene36273:intergenic | 35.0% | |
| AATCAATGAGATATACAGCG+AGG | - | 15221:3907-3926 | MS.gene36273:intergenic | 35.0% | |
| ACAAGGTAAAAAGATCGATC+TGG | + | 15221:4662-4681 | MS.gene36273:intron | 35.0% | |
| ATATAAGCACCTGACATCTT+CGG | - | 15221:2880-2899 | MS.gene36273:intergenic | 35.0% | |
| ATTGCAGCGGAAATACAAAT+AGG | + | 15221:2582-2601 | MS.gene36273:CDS | 35.0% | |
| CAAATCTGATGCTTTGTAAG+AGG | - | 15221:5032-5051 | MS.gene36273:intergenic | 35.0% | |
| CAAGGTAAAAAGATCGATCT+GGG | + | 15221:4663-4682 | MS.gene36273:intron | 35.0% | |
| CATATATATCAGCAGCATAG+TGG | - | 15221:3269-3288 | MS.gene36273:intergenic | 35.0% | |
| CTGAAAGTAGCAGTTTCATA+TGG | + | 15221:4243-4262 | MS.gene36273:intron | 35.0% | |
| CTGGCAGATATAAAAGTAAC+AGG | - | 15221:2727-2746 | MS.gene36273:intergenic | 35.0% | |
| CTTTGTAATGTCAGAGTATG+TGG | + | 15221:4381-4400 | MS.gene36273:intron | 35.0% | |
| GAACTAACACTGTTGAACTA+TGG | + | 15221:4806-4825 | MS.gene36273:CDS | 35.0% | |
| GCACATAGTTATGAAATGCA+TGG | + | 15221:3361-3380 | MS.gene36273:intron | 35.0% | |
| GTTTCCATGAAGTTAGGATA+AGG | - | 15221:3518-3537 | MS.gene36273:intergenic | 35.0% | |
| TAACACATACACAAAAGAGG+AGG | + | 15221:4141-4160 | MS.gene36273:CDS | 35.0% | |
| TAGTACATTCTTGGTTTCGT+AGG | + | 15221:4611-4630 | MS.gene36273:intron | 35.0% | |
| TATGCAACCTGAATTTCAGT+TGG | - | 15221:2620-2639 | MS.gene36273:intergenic | 35.0% | |
| TATGTGCCATAAAGCAACAT+TGG | - | 15221:3348-3367 | MS.gene36273:intergenic | 35.0% | |
| TCGCTGTATATCTCATTGAT+TGG | + | 15221:3906-3925 | MS.gene36273:CDS | 35.0% | |
| TGAACACGAATTCAACACAT+GGG | - | 15221:3845-3864 | MS.gene36273:intergenic | 35.0% | |
| TGATTGACAGGTAGTAAAAC+TGG | + | 15221:4442-4461 | MS.gene36273:intron | 35.0% | |
| TGGTAGAGACAATAATGACA+GGG | - | 15221:3328-3347 | MS.gene36273:intergenic | 35.0% | |
| TGTACTGTTTCCATGAAGTT+AGG | - | 15221:3524-3543 | MS.gene36273:intergenic | 35.0% | |
| TGTCAGGTGCTTATATGATT+TGG | + | 15221:2884-2903 | MS.gene36273:CDS | 35.0% | |
| TTCAGAAATGTTACCTCTCT+TGG | - | 15221:3175-3194 | MS.gene36273:intergenic | 35.0% | |
| TTGGTAGAGACAATAATGAC+AGG | - | 15221:3329-3348 | MS.gene36273:intergenic | 35.0% | |
| TTTGTTTGTGTGTAGCTCAA+TGG | + | 15221:5272-5291 | MS.gene36273:intron | 35.0% | |
| ! | AGAATTGCCCTCTTTTTATG+AGG | - | 15221:2545-2564 | MS.gene36273:intergenic | 35.0% |
| ! | GATCGATCTTTTTACCTTGT+AGG | - | 15221:4662-4681 | MS.gene36273:intergenic | 35.0% |
| ! | GGAACCTCATTTGAAACATT+AGG | - | 15221:2783-2802 | MS.gene36273:intergenic | 35.0% |
| ! | TAGTTGGTGTAACTTAGTTG+TGG | + | 15221:3115-3134 | MS.gene36273:intron | 35.0% |
| !! | CTCTTTTTGAATTGGCTCTT+AGG | - | 15221:2499-2518 | MS.gene36273:intergenic | 35.0% |
| !! | CTTTTTGAATTGGCTCTTAG+GGG | - | 15221:2497-2516 | MS.gene36273:intergenic | 35.0% |
| !! | TCTCTACCAATGTTGCTTTA+TGG | + | 15221:3339-3358 | MS.gene36273:intron | 35.0% |
| !! | TTTGAAACATTAGGTTGAGC+AGG | - | 15221:2774-2793 | MS.gene36273:intergenic | 35.0% |
| !!! | CATTTTTTCAGCTGTCAAGA+AGG | + | 15221:3492-3511 | MS.gene36273:intron | 35.0% |
| !!! | CTGTTACTTTTATATCTGCC+AGG | + | 15221:2725-2744 | MS.gene36273:intron | 35.0% |
| AAAGAAATGCACCAACCCAT+GGG | - | 15221:4910-4929 | MS.gene36273:intergenic | 40.0% | |
| AAGCAGAAGTCTTCAATACG+AGG | - | 15221:4112-4131 | MS.gene36273:intergenic | 40.0% | |
| AAGCAGATATTCTAGACGTC+TGG | - | 15221:2974-2993 | MS.gene36273:intergenic | 40.0% | |
| AAGTACTCCAACTCAATGCT+AGG | - | 15221:4770-4789 | MS.gene36273:intergenic | 40.0% | |
| ACTATTGGACGGTAGAAGAA+AGG | - | 15221:4546-4565 | MS.gene36273:intergenic | 40.0% | |
| AGCAGAAGTCTTCAATACGA+GGG | - | 15221:4111-4130 | MS.gene36273:intergenic | 40.0% | |
| ATATCTGCCAGGCTAAGAAA+AGG | + | 15221:2736-2755 | MS.gene36273:intron | 40.0% | |
| ATGCAGCAATCATAGAAGGA+AGG | - | 15221:4844-4863 | MS.gene36273:intergenic | 40.0% | |
| CAAGACAAGGTATGTCAGAA+AGG | + | 15221:5136-5155 | MS.gene36273:intron | 40.0% | |
| CATGTGTTGAATTCGTGTTC+AGG | + | 15221:3844-3863 | MS.gene36273:intron | 40.0% | |
| CTACTACCAAAACTTTCCTC+AGG | + | 15221:4507-4526 | MS.gene36273:CDS | 40.0% | |
| CTGAACACGAATTCAACACA+TGG | - | 15221:3846-3865 | MS.gene36273:intergenic | 40.0% | |
| GATGTCACTAACAATTGCAG+CGG | + | 15221:2569-2588 | MS.gene36273:CDS | 40.0% | |
| GTTTCGATGTATGCTTTCCT+TGG | - | 15221:4224-4243 | MS.gene36273:intergenic | 40.0% | |
| TACATTCTTGGTTTCGTAGG+AGG | + | 15221:4614-4633 | MS.gene36273:intron | 40.0% | |
| TCCTTCTATGATTGCTGCAT+CGG | + | 15221:4844-4863 | MS.gene36273:CDS | 40.0% | |
| TGGTTGACACTAATCCTAAG+AGG | - | 15221:2921-2940 | MS.gene36273:intergenic | 40.0% | |
| TGTCTTGTGTGTACTTCTTG+CGG | - | 15221:5123-5142 | MS.gene36273:intergenic | 40.0% | |
| TTAGATCATCCGAAGATGTC+AGG | + | 15221:2868-2887 | MS.gene36273:CDS | 40.0% | |
| ! | AAGGCCTTATCCTAACTTCA+TGG | + | 15221:3511-3530 | MS.gene36273:CDS | 40.0% |
| ! | AATTCGTGTTCAGGTTTCTG+AGG | + | 15221:3853-3872 | MS.gene36273:intron | 40.0% |
| ! | AGACGTCTAGAATATCTGCT+TGG | + | 15221:2973-2992 | MS.gene36273:CDS | 40.0% |
| ! | ATTCGTGTTCAGGTTTCTGA+GGG | + | 15221:3854-3873 | MS.gene36273:intron | 40.0% |
| ! | CAAGAAGTACACACAAGACA+AGG | + | 15221:5123-5142 | MS.gene36273:CDS | 40.0% |
| ! | CCTTCGAGTTCTCAAAAGAA+AGG | + | 15221:2996-3015 | MS.gene36273:CDS | 40.0% |
| ! | GGAGTACTTGACAAATTACC+TGG | + | 15221:4781-4800 | MS.gene36273:CDS | 40.0% |
| !! | CCTTTCTTTTGAGAACTCGA+AGG | - | 15221:2999-3018 | MS.gene36273:intergenic | 40.0% |
| !! | CTGAGGAAAGTTTTGGTAGT+AGG | - | 15221:4509-4528 | MS.gene36273:intergenic | 40.0% |
| AAAAGAGAGACTTCAGCTGC+TGG | + | 15221:3952-3971 | MS.gene36273:CDS | 45.0% | |
| AAAGAGAGACTTCAGCTGCT+GGG | + | 15221:3953-3972 | MS.gene36273:CDS | 45.0% | |
| ACAGTTACCACCAATGAAGG+AGG | + | 15221:2442-2461 | MS.gene36273:CDS | 45.0% | |
| CAAATTGTTGCAGCCAAGAG+AGG | + | 15221:3159-3178 | MS.gene36273:CDS | 45.0% | |
| CGCATTTCCATTGAACTCAC+CGG | - | 15221:2846-2865 | MS.gene36273:intergenic | 45.0% | |
| CTCAAAACCGGTGAGTTCAA+TGG | + | 15221:2836-2855 | MS.gene36273:CDS | 45.0% | |
| CTCGTAAGTTCTCAACTCCA+AGG | + | 15221:3997-4016 | MS.gene36273:intron | 45.0% | |
| CTTGGAGTTGAGAACTTACG+AGG | - | 15221:3999-4018 | MS.gene36273:intergenic | 45.0% | |
| GAAAGAAATGCACCAACCCA+TGG | - | 15221:4911-4930 | MS.gene36273:intergenic | 45.0% | |
| GAGGCATAGTGTTCAAGAGT+TGG | - | 15221:5013-5032 | MS.gene36273:intergenic | 45.0% | |
| GATTATTGTCTGTGCCACAC+TGG | - | 15221:2941-2960 | MS.gene36273:intergenic | 45.0% | |
| GCAGAAGTCTTCAATACGAG+GGG | - | 15221:4110-4129 | MS.gene36273:intergenic | 45.0% | |
| GTTCTCAACTCCAAGGAAGT+TGG | + | 15221:4004-4023 | MS.gene36273:intron | 45.0% | |
| TCAACAGTGTTAGTTCAGCC+AGG | - | 15221:4802-4821 | MS.gene36273:intergenic | 45.0% | |
| TGGAAGACAATGCACCTCTT+AGG | + | 15221:2904-2923 | MS.gene36273:CDS | 45.0% | |
| TGGACAGTTACCACCAATGA+AGG | + | 15221:2439-2458 | MS.gene36273:CDS | 45.0% | |
| TGTCCATCTTGCCAGAAACA+AGG | - | 15221:4870-4889 | MS.gene36273:intergenic | 45.0% | |
| TTGTGTGTACTTCTTGCGGA+TGG | - | 15221:5119-5138 | MS.gene36273:intergenic | 45.0% | |
| ! | AGGATTAGTGTCAACCAGTG+TGG | + | 15221:2924-2943 | MS.gene36273:CDS | 45.0% |
| ! | GCTCATAGCTGACTCAAAAC+CGG | + | 15221:2824-2843 | MS.gene36273:CDS | 45.0% |
| ! | TGCGTGCAATACTGGTTGAT+TGG | + | 15221:3564-3583 | MS.gene36273:CDS | 45.0% |
| !! | AAGAGTGTCACTCTGAAAGC+TGG | + | 15221:2365-2384 | MS.gene36273:CDS | 45.0% |
| !! | ACTGGTTGATTGGCTTGTTG+AGG | + | 15221:3574-3593 | MS.gene36273:CDS | 45.0% |
| !! | GAAGCACCTGAGGAAAGTTT+TGG | - | 15221:4516-4535 | MS.gene36273:intergenic | 45.0% |
| !! | GCTGTGGCTTTAAGTACAAC+TGG | + | 15221:2419-2438 | MS.gene36273:CDS | 45.0% |
| !!! | GGTTTTGAGTCAGCTATGAG+CGG | - | 15221:2825-2844 | MS.gene36273:intergenic | 45.0% |
| AAACCTCAGCAACACGCAAG+TGG | - | 15221:3293-3312 | MS.gene36273:intergenic | 50.0% | |
| ACCAGTATTGCACGCATGCT+TGG | - | 15221:3560-3579 | MS.gene36273:intergenic | 50.0% | |
| AGATCAGTCAAGCCACCCAT+GGG | + | 15221:4892-4911 | MS.gene36273:CDS | 50.0% | |
| CCAGGCTAAGAAAAGGAAGG+TGG | + | 15221:2743-2762 | MS.gene36273:intron | 50.0% | |
| CTGCCAGGCTAAGAAAAGGA+AGG | + | 15221:2740-2759 | MS.gene36273:intron | 50.0% | |
| GCATAGTGGCTGCATAGTTG+AGG | - | 15221:3255-3274 | MS.gene36273:intergenic | 50.0% | |
| GCATCTATGTCAGCGACATC+TGG | - | 15221:3219-3238 | MS.gene36273:intergenic | 50.0% | |
| GCCGATGCAGCAATCATAGA+AGG | - | 15221:4848-4867 | MS.gene36273:intergenic | 50.0% | |
| TAGATCAGTCAAGCCACCCA+TGG | + | 15221:4891-4910 | MS.gene36273:CDS | 50.0% | |
| TCCAAGCATGCGTGCAATAC+TGG | + | 15221:3556-3575 | MS.gene36273:CDS | 50.0% | |
| TCGTAGGAGGTTTCTTCGAG+CGG | + | 15221:4627-4646 | MS.gene36273:intron | 50.0% | |
| TCTTGCGGATGGAGGCTAAA+GGG | - | 15221:5108-5127 | MS.gene36273:intergenic | 50.0% | |
| TGCTTCTGATCCTGAGTTCC+TGG | - | 15221:2473-2492 | MS.gene36273:intergenic | 50.0% | |
| TGTGTACTTCTTGCGGATGG+AGG | - | 15221:5116-5135 | MS.gene36273:intergenic | 50.0% | |
| TTCTTGCGGATGGAGGCTAA+AGG | - | 15221:5109-5128 | MS.gene36273:intergenic | 50.0% | |
| TTTGAGTCAGCTATGAGCGG+TGG | - | 15221:2822-2841 | MS.gene36273:intergenic | 50.0% | |
| ! | CCACCTTCCTTTTCTTAGCC+TGG | - | 15221:2746-2765 | MS.gene36273:intergenic | 50.0% |
| ! | GCAGAGACCTAGCATTGAGT+TGG | + | 15221:4760-4779 | MS.gene36273:intron | 50.0% |
| ! | TGTCACTCTGAAAGCTGGAG+AGG | + | 15221:2370-2389 | MS.gene36273:CDS | 50.0% |
| ACACAAGGGGCCAACTTCCT+TGG | - | 15221:4017-4036 | MS.gene36273:intergenic | 55.0% | |
| AGCGGCACAAGCTTCCTACA+AGG | + | 15221:4645-4664 | MS.gene36273:CDS | 55.0% | |
| CCAATGAAGGAGGTAGCACC+AGG | + | 15221:2452-2471 | MS.gene36273:CDS | 55.0% | |
| GAAATGCACCAACCCATGGG+TGG | - | 15221:4907-4926 | MS.gene36273:intergenic | 55.0% | |
| TATGAGCGGTGGTAGCTCAG+CGG | - | 15221:2811-2830 | MS.gene36273:intergenic | 55.0% | |
| ! | GGTGCTACCTCCTTCATTGG+TGG | - | 15221:2452-2471 | MS.gene36273:intergenic | 55.0% |
| ! | TGACCACTTGCGTGTTGCTG+AGG | + | 15221:3287-3306 | MS.gene36273:CDS | 55.0% |
| !! | AGGTTGACGAGAAGCACCTG+AGG | - | 15221:4526-4545 | MS.gene36273:intergenic | 55.0% |
| !! | ATTGACTCGTGCTCGAGCTG+TGG | + | 15221:2403-2422 | MS.gene36273:CDS | 55.0% |
| !! | CCTGGTGCTACCTCCTTCAT+TGG | - | 15221:2455-2474 | MS.gene36273:intergenic | 55.0% |
| !! | CGGCCTTGTTTCTGGCAAGA+TGG | + | 15221:4864-4883 | MS.gene36273:CDS | 55.0% |
| !! | TGCTGCATCGGCCTTGTTTC+TGG | + | 15221:4856-4875 | MS.gene36273:CDS | 55.0% |
| CAGTCAAGCCACCCATGGGT+TGG | + | 15221:4896-4915 | MS.gene36273:intron | 60.0% | |
| GGAGGTAGCACCAGGAACTC+AGG | + | 15221:2460-2479 | MS.gene36273:CDS | 60.0% | |
| GGTGGTAGCTCAGCGGCTGA+TGG | - | 15221:2804-2823 | MS.gene36273:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 15221 | gene | 2359 | 5340 | 2359 | ID=MS.gene36273 |
| 15221 | mRNA | 2359 | 5340 | 2359 | ID=MS.gene36273.t1;Parent=MS.gene36273 |
| 15221 | exon | 2359 | 2631 | 2359 | ID=MS.gene36273.t1.exon1;Parent=MS.gene36273.t1 |
| 15221 | CDS | 2359 | 2631 | 2359 | ID=cds.MS.gene36273.t1;Parent=MS.gene36273.t1 |
| 15221 | exon | 2747 | 3017 | 2747 | ID=MS.gene36273.t1.exon2;Parent=MS.gene36273.t1 |
| 15221 | CDS | 2747 | 3017 | 2747 | ID=cds.MS.gene36273.t1;Parent=MS.gene36273.t1 |
| 15221 | exon | 3154 | 3308 | 3154 | ID=MS.gene36273.t1.exon3;Parent=MS.gene36273.t1 |
| 15221 | CDS | 3154 | 3308 | 3154 | ID=cds.MS.gene36273.t1;Parent=MS.gene36273.t1 |
| 15221 | exon | 3503 | 3595 | 3503 | ID=MS.gene36273.t1.exon4;Parent=MS.gene36273.t1 |
| 15221 | CDS | 3503 | 3595 | 3503 | ID=cds.MS.gene36273.t1;Parent=MS.gene36273.t1 |
| 15221 | exon | 3866 | 3999 | 3866 | ID=MS.gene36273.t1.exon5;Parent=MS.gene36273.t1 |
| 15221 | CDS | 3866 | 3999 | 3866 | ID=cds.MS.gene36273.t1;Parent=MS.gene36273.t1 |
| 15221 | exon | 4087 | 4162 | 4087 | ID=MS.gene36273.t1.exon6;Parent=MS.gene36273.t1 |
| 15221 | CDS | 4087 | 4162 | 4087 | ID=cds.MS.gene36273.t1;Parent=MS.gene36273.t1 |
| 15221 | exon | 4452 | 4528 | 4452 | ID=MS.gene36273.t1.exon7;Parent=MS.gene36273.t1 |
| 15221 | CDS | 4452 | 4528 | 4452 | ID=cds.MS.gene36273.t1;Parent=MS.gene36273.t1 |
| 15221 | exon | 4633 | 4666 | 4633 | ID=MS.gene36273.t1.exon8;Parent=MS.gene36273.t1 |
| 15221 | CDS | 4633 | 4666 | 4633 | ID=cds.MS.gene36273.t1;Parent=MS.gene36273.t1 |
| 15221 | exon | 4764 | 4913 | 4764 | ID=MS.gene36273.t1.exon9;Parent=MS.gene36273.t1 |
| 15221 | CDS | 4764 | 4913 | 4764 | ID=cds.MS.gene36273.t1;Parent=MS.gene36273.t1 |
| 15221 | exon | 5007 | 5144 | 5007 | ID=MS.gene36273.t1.exon10;Parent=MS.gene36273.t1 |
| 15221 | CDS | 5007 | 5144 | 5007 | ID=cds.MS.gene36273.t1;Parent=MS.gene36273.t1 |
| 15221 | exon | 5287 | 5340 | 5287 | ID=MS.gene36273.t1.exon11;Parent=MS.gene36273.t1 |
| 15221 | CDS | 5287 | 5340 | 5287 | ID=cds.MS.gene36273.t1;Parent=MS.gene36273.t1 |
| Gene Sequence |
| Protein sequence |
