Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55732.t1 | XP_013447094.1 | 100 | 177 | 0 | 0 | 1 | 177 | 1 | 177 | 5.20E-81 | 310.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55732.t1 | P0DKK8 | 84.8 | 125 | 17 | 2 | 1 | 123 | 1 | 125 | 1.1e-55 | 217.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55732.t1 | I3SV05 | 100.0 | 177 | 0 | 0 | 1 | 177 | 1 | 177 | 3.7e-81 | 310.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049140 | MS.gene55732 | 0.806899 | 6.57E-50 | -1.69E-46 |
| MS.gene049255 | MS.gene55732 | 0.833817 | 4.29E-56 | -1.69E-46 |
| MS.gene049340 | MS.gene55732 | 0.812947 | 3.28E-51 | -1.69E-46 |
| MS.gene049341 | MS.gene55732 | 0.835113 | 2.03E-56 | -1.69E-46 |
| MS.gene049580 | MS.gene55732 | 0.825755 | 3.94E-54 | -1.69E-46 |
| MS.gene049756 | MS.gene55732 | 0.819287 | 1.26E-52 | -1.69E-46 |
| MS.gene049824 | MS.gene55732 | 0.818357 | 2.04E-52 | -1.69E-46 |
| MS.gene049825 | MS.gene55732 | 0.833919 | 4.04E-56 | -1.69E-46 |
| MS.gene049873 | MS.gene55732 | 0.801455 | 8.93E-49 | -1.69E-46 |
| MS.gene049887 | MS.gene55732 | 0.82539 | 4.81E-54 | -1.69E-46 |
| MS.gene050277 | MS.gene55732 | 0.910875 | 1.15E-82 | -1.69E-46 |
| MS.gene050290 | MS.gene55732 | 0.832235 | 1.06E-55 | -1.69E-46 |
| MS.gene050303 | MS.gene55732 | 0.855985 | 4.37E-62 | -1.69E-46 |
| MS.gene050320 | MS.gene55732 | 0.839578 | 1.46E-57 | -1.69E-46 |
| MS.gene050752 | MS.gene55732 | 0.809486 | 1.85E-50 | -1.69E-46 |
| MS.gene050807 | MS.gene55732 | 0.810339 | 1.21E-50 | -1.69E-46 |
| MS.gene050838 | MS.gene55732 | 0.868985 | 4.34E-66 | -1.69E-46 |
| MS.gene050916 | MS.gene55732 | 0.86013 | 2.56E-63 | -1.69E-46 |
| MS.gene051063 | MS.gene55732 | 0.890267 | 1.15E-73 | -1.69E-46 |
| MS.gene051245 | MS.gene55732 | 0.826147 | 3.18E-54 | -1.69E-46 |
| MS.gene051328 | MS.gene55732 | 0.83189 | 1.29E-55 | -1.69E-46 |
| MS.gene051330 | MS.gene55732 | 0.908435 | 1.72E-81 | -1.69E-46 |
| MS.gene05134 | MS.gene55732 | 0.842507 | 2.48E-58 | -1.69E-46 |
| MS.gene051451 | MS.gene55732 | 0.844042 | 9.66E-59 | -1.69E-46 |
| MS.gene051633 | MS.gene55732 | 0.835483 | 1.63E-56 | -1.69E-46 |
| MS.gene051687 | MS.gene55732 | 0.846302 | 2.37E-59 | -1.69E-46 |
| MS.gene051700 | MS.gene55732 | 0.856604 | 2.88E-62 | -1.69E-46 |
| MS.gene051746 | MS.gene55732 | 0.919516 | 4.08E-87 | -1.69E-46 |
| MS.gene051748 | MS.gene55732 | 0.90685 | 9.55E-81 | -1.69E-46 |
| MS.gene051756 | MS.gene55732 | 0.836046 | 1.18E-56 | -1.69E-46 |
| MS.gene051757 | MS.gene55732 | 0.82487 | 6.39E-54 | -1.69E-46 |
| MS.gene051850 | MS.gene55732 | 0.87071 | 1.19E-66 | -1.69E-46 |
| MS.gene051885 | MS.gene55732 | 0.810212 | 1.29E-50 | -1.69E-46 |
| MS.gene05188 | MS.gene55732 | 0.837023 | 6.64E-57 | -1.69E-46 |
| MS.gene051903 | MS.gene55732 | 0.921895 | 1.99E-88 | -1.69E-46 |
| MS.gene051975 | MS.gene55732 | 0.813205 | 2.88E-51 | -1.69E-46 |
| MS.gene052133 | MS.gene55732 | 0.852527 | 4.35E-61 | -1.69E-46 |
| MS.gene052202 | MS.gene55732 | 0.820407 | 6.97E-53 | -1.69E-46 |
| MS.gene052256 | MS.gene55732 | 0.811895 | 5.57E-51 | -1.69E-46 |
| MS.gene052286 | MS.gene55732 | 0.834078 | 3.69E-56 | -1.69E-46 |
| MS.gene052302 | MS.gene55732 | 0.865374 | 6.19E-65 | -1.69E-46 |
| MS.gene052376 | MS.gene55732 | 0.864632 | 1.06E-64 | -1.69E-46 |
| MS.gene052856 | MS.gene55732 | 0.823465 | 1.36E-53 | -1.69E-46 |
| MS.gene052879 | MS.gene55732 | 0.820087 | 8.25E-53 | -1.69E-46 |
| MS.gene052880 | MS.gene55732 | 0.801872 | 7.34E-49 | -1.69E-46 |
| MS.gene052947 | MS.gene55732 | 0.929056 | 1.20E-92 | -1.69E-46 |
| MS.gene053058 | MS.gene55732 | 0.806458 | 8.15E-50 | -1.69E-46 |
| MS.gene053109 | MS.gene55732 | 0.85965 | 3.57E-63 | -1.69E-46 |
| MS.gene053132 | MS.gene55732 | 0.808672 | 2.76E-50 | -1.69E-46 |
| MS.gene053294 | MS.gene55732 | 0.814639 | 1.39E-51 | -1.69E-46 |
| MS.gene053437 | MS.gene55732 | 0.815466 | 9.11E-52 | -1.69E-46 |
| MS.gene053581 | MS.gene55732 | 0.812414 | 4.29E-51 | -1.69E-46 |
| MS.gene053952 | MS.gene55732 | 0.874941 | 4.55E-68 | -1.69E-46 |
| MS.gene054403 | MS.gene55732 | 0.810078 | 1.38E-50 | -1.69E-46 |
| MS.gene054937 | MS.gene55732 | 0.840196 | 1.01E-57 | -1.69E-46 |
| MS.gene055162 | MS.gene55732 | 0.824889 | 6.32E-54 | -1.69E-46 |
| MS.gene055424 | MS.gene55732 | 0.854572 | 1.13E-61 | -1.69E-46 |
| MS.gene055468 | MS.gene55732 | 0.804049 | 2.60E-49 | -1.69E-46 |
| MS.gene055555 | MS.gene55732 | 0.825612 | 4.26E-54 | -1.69E-46 |
| MS.gene055580 | MS.gene55732 | -0.827816 | 1.27E-54 | -1.69E-46 |
| MS.gene055591 | MS.gene55732 | -0.82892 | 6.87E-55 | -1.69E-46 |
| MS.gene055603 | MS.gene55732 | 0.802749 | 4.84E-49 | -1.69E-46 |
| MS.gene055780 | MS.gene55732 | 0.82677 | 2.26E-54 | -1.69E-46 |
| MS.gene055808 | MS.gene55732 | 0.880488 | 5.27E-70 | -1.69E-46 |
| MS.gene056043 | MS.gene55732 | -0.840621 | 7.79E-58 | -1.69E-46 |
| MS.gene056075 | MS.gene55732 | 0.896695 | 2.88E-76 | -1.69E-46 |
| MS.gene056091 | MS.gene55732 | 0.882998 | 6.50E-71 | -1.69E-46 |
| MS.gene056215 | MS.gene55732 | 0.810305 | 1.23E-50 | -1.69E-46 |
| MS.gene056403 | MS.gene55732 | 0.815659 | 8.25E-52 | -1.69E-46 |
| MS.gene056432 | MS.gene55732 | 0.842758 | 2.13E-58 | -1.69E-46 |
| MS.gene056580 | MS.gene55732 | 0.821985 | 3.02E-53 | -1.69E-46 |
| MS.gene056601 | MS.gene55732 | 0.852934 | 3.33E-61 | -1.69E-46 |
| MS.gene056605 | MS.gene55732 | 0.816978 | 4.18E-52 | -1.69E-46 |
| MS.gene056631 | MS.gene55732 | 0.926674 | 3.39E-91 | -1.69E-46 |
| MS.gene056760 | MS.gene55732 | 0.824572 | 7.51E-54 | -1.69E-46 |
| MS.gene056986 | MS.gene55732 | 0.819141 | 1.36E-52 | -1.69E-46 |
| MS.gene057057 | MS.gene55732 | 0.837119 | 6.27E-57 | -1.69E-46 |
| MS.gene057079 | MS.gene55732 | 0.800718 | 1.26E-48 | -1.69E-46 |
| MS.gene057094 | MS.gene55732 | 0.909606 | 4.73E-82 | -1.69E-46 |
| MS.gene057140 | MS.gene55732 | 0.818987 | 1.47E-52 | -1.69E-46 |
| MS.gene057234 | MS.gene55732 | 0.860688 | 1.74E-63 | -1.69E-46 |
| MS.gene057705 | MS.gene55732 | 0.8746 | 5.95E-68 | -1.69E-46 |
| MS.gene058055 | MS.gene55732 | 0.829167 | 5.99E-55 | -1.69E-46 |
| MS.gene058074 | MS.gene55732 | 0.80568 | 1.19E-49 | -1.69E-46 |
| MS.gene058084 | MS.gene55732 | 0.83076 | 2.45E-55 | -1.69E-46 |
| MS.gene05809 | MS.gene55732 | 0.834859 | 2.35E-56 | -1.69E-46 |
| MS.gene058182 | MS.gene55732 | 0.809726 | 1.64E-50 | -1.69E-46 |
| MS.gene058216 | MS.gene55732 | 0.801314 | 9.55E-49 | -1.69E-46 |
| MS.gene058238 | MS.gene55732 | 0.872936 | 2.17E-67 | -1.69E-46 |
| MS.gene058354 | MS.gene55732 | 0.815711 | 8.04E-52 | -1.69E-46 |
| MS.gene058852 | MS.gene55732 | 0.817661 | 2.94E-52 | -1.69E-46 |
| MS.gene058906 | MS.gene55732 | 0.903232 | 4.29E-79 | -1.69E-46 |
| MS.gene058908 | MS.gene55732 | 0.802597 | 5.20E-49 | -1.69E-46 |
| MS.gene058911 | MS.gene55732 | 0.810932 | 9.02E-51 | -1.69E-46 |
| MS.gene059171 | MS.gene55732 | 0.828 | 1.15E-54 | -1.69E-46 |
| MS.gene059227 | MS.gene55732 | 0.823003 | 1.75E-53 | -1.69E-46 |
| MS.gene05953 | MS.gene55732 | 0.813455 | 2.54E-51 | -1.69E-46 |
| MS.gene05954 | MS.gene55732 | 0.819354 | 1.21E-52 | -1.69E-46 |
| MS.gene059726 | MS.gene55732 | 0.824311 | 8.65E-54 | -1.69E-46 |
| MS.gene059830 | MS.gene55732 | 0.802301 | 5.99E-49 | -1.69E-46 |
| MS.gene059898 | MS.gene55732 | 0.830269 | 3.23E-55 | -1.69E-46 |
| MS.gene06001 | MS.gene55732 | 0.997797 | 2.05E-249 | -1.69E-46 |
| MS.gene06011 | MS.gene55732 | 0.835255 | 1.87E-56 | -1.69E-46 |
| MS.gene060429 | MS.gene55732 | 0.88458 | 1.70E-71 | -1.69E-46 |
| MS.gene060465 | MS.gene55732 | 0.801453 | 8.94E-49 | -1.69E-46 |
| MS.gene060586 | MS.gene55732 | 0.828507 | 8.65E-55 | -1.69E-46 |
| MS.gene060619 | MS.gene55732 | 0.819396 | 1.19E-52 | -1.69E-46 |
| MS.gene060763 | MS.gene55732 | 0.80564 | 1.21E-49 | -1.69E-46 |
| MS.gene060830 | MS.gene55732 | 0.817872 | 2.63E-52 | -1.69E-46 |
| MS.gene060917 | MS.gene55732 | 0.836696 | 8.04E-57 | -1.69E-46 |
| MS.gene061145 | MS.gene55732 | 0.838528 | 2.73E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene55732 | MS.gene056722 | PPI |
| MS.gene55732 | MS.gene040115 | PPI |
| MS.gene019556 | MS.gene55732 | PPI |
| MS.gene001756 | MS.gene55732 | PPI |
| MS.gene94561 | MS.gene55732 | PPI |
| MS.gene55732 | MS.gene93753 | PPI |
| MS.gene047001 | MS.gene55732 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55732.t1 | MTR_8g098850 | 100.000 | 177 | 0 | 0 | 1 | 177 | 1 | 177 | 6.13e-128 | 356 |
| MS.gene55732.t1 | MTR_5g010025 | 93.889 | 180 | 8 | 1 | 1 | 177 | 28 | 207 | 1.53e-120 | 339 |
| MS.gene55732.t1 | MTR_8g098850 | 100.000 | 132 | 0 | 0 | 46 | 177 | 1 | 132 | 2.28e-90 | 260 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55732.t1 | AT4G25740 | 82.237 | 152 | 25 | 1 | 1 | 152 | 1 | 150 | 1.64e-79 | 234 |
| MS.gene55732.t1 | AT5G52650 | 82.468 | 154 | 25 | 1 | 1 | 152 | 1 | 154 | 4.09e-74 | 220 |
| MS.gene55732.t1 | AT5G41520 | 75.817 | 153 | 31 | 5 | 1 | 150 | 1 | 150 | 6.56e-70 | 210 |
| MS.gene55732.t1 | AT4G25740 | 64.706 | 170 | 30 | 1 | 1 | 170 | 1 | 140 | 6.91e-60 | 183 |
| MS.gene55732.t1 | AT5G41520 | 75.701 | 107 | 21 | 4 | 46 | 150 | 1 | 104 | 7.82e-43 | 139 |
Find 64 sgRNAs with CRISPR-Local
Find 128 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCTTAATCACCTGCAAATT+TGG | 0.141151 | 4.3:-5488859 | None:intergenic |
| GGTCGTGGATCTGGTGGTTT+TGG | 0.201005 | 4.3:+5490270 | MS.gene55732:CDS |
| TGCCAAATTGAAATCCTTCT+TGG | 0.227664 | 4.3:-5488815 | None:intergenic |
| TCTCCTCTCCCCTTCAAATC+TGG | 0.263606 | 4.3:-5489173 | None:intergenic |
| GGAGGTCCTCGTGGTGAATT+TGG | 0.264246 | 4.3:+5489223 | MS.gene55732:CDS |
| TTGCTTGGATGAATTATTAC+TGG | 0.274951 | 4.3:+5488923 | MS.gene55732:CDS |
| TGCCAAGAAGGATTTCAATT+TGG | 0.277902 | 4.3:+5488813 | MS.gene55732:CDS |
| TTTGAAGGGGAGAGGAGATT+TGG | 0.304539 | 4.3:+5489178 | MS.gene55732:CDS |
| AAATTTGGAACATCGATTTC+TGG | 0.305282 | 4.3:-5488844 | None:intergenic |
| CTGATTACAGACCCTCATTT+GGG | 0.309337 | 4.3:+5489269 | MS.gene55732:CDS |
| CAGGGTCCTGGTGGAAGGCC+TGG | 0.329758 | 4.3:+5490243 | MS.gene55732:intron |
| GCTGATTACAGACCCTCATT+TGG | 0.333812 | 4.3:+5489268 | MS.gene55732:CDS |
| AAGCCACCTGGTAGACCTTT+TGG | 0.340230 | 4.3:+5489033 | MS.gene55732:CDS |
| TGTCTTGTTGTGCAGGGTCC+TGG | 0.359491 | 4.3:+5490231 | MS.gene55732:intron |
| CCTGGATTTGGTCGTGGATC+TGG | 0.375183 | 4.3:+5490261 | MS.gene55732:CDS |
| CCTGGTGGAAGGCCTGGATT+TGG | 0.398371 | 4.3:+5490249 | MS.gene55732:CDS |
| AATCGATGTTCCAAATTTGC+AGG | 0.408613 | 4.3:+5488849 | MS.gene55732:CDS |
| CTCCTCTCCCCTTCAAATCT+GGG | 0.426727 | 4.3:-5489172 | None:intergenic |
| GCTTGTTTCTTCAAAGTAGC+AGG | 0.433371 | 4.3:-5489009 | None:intergenic |
| TTGTGCAGGGTCCTGGTGGA+AGG | 0.448944 | 4.3:+5490238 | MS.gene55732:intron |
| CTTTAAGCATCTGAGCTAGT+TGG | 0.449096 | 4.3:-5490300 | None:intergenic |
| GAAGGGGAGAGGAGATTTGG+TGG | 0.472199 | 4.3:+5489181 | MS.gene55732:CDS |
| TTATGCAGAGCTTCAAATCA+AGG | 0.477684 | 4.3:+5488881 | MS.gene55732:CDS |
| AGGGGTCCACCCAGATTTGA+AGG | 0.489080 | 4.3:+5489163 | MS.gene55732:intron |
| GGTACTTGCAGATCTCTTTG+CGG | 0.502239 | 4.3:-5488664 | None:intergenic |
| AATATAATATACCTTGGAAA+AGG | 0.503793 | 4.3:-5488685 | None:intergenic |
| TACTGGTTTCTCACTAATGA+CGG | 0.504599 | 4.3:+5488940 | MS.gene55732:CDS |
| CAATAAGCTTACCCCAAATG+AGG | 0.509168 | 4.3:-5489281 | None:intergenic |
| GTCCACAGGGTGATCGTCCT+AGG | 0.525900 | 4.3:+5489058 | MS.gene55732:CDS |
| TAAGCATCTGAGCTAGTTGG+AGG | 0.527305 | 4.3:-5490297 | None:intergenic |
| CACCCAGATTTGAAGGGGAG+AGG | 0.528752 | 4.3:+5489170 | MS.gene55732:CDS |
| ATGTTAGAGAAACCTTTGCT+TGG | 0.529285 | 4.3:+5488908 | MS.gene55732:CDS |
| GGAAGGCCTGGATTTGGTCG+TGG | 0.535608 | 4.3:+5490255 | MS.gene55732:CDS |
| CCAGATCCACGACCAAATCC+AGG | 0.536843 | 4.3:-5490261 | None:intergenic |
| TCACCCTGTGGACCACCAAA+AGG | 0.552245 | 4.3:-5489048 | None:intergenic |
| AATGAGGGTCTGTAATCAGC+AGG | 0.552369 | 4.3:-5489265 | None:intergenic |
| GTAATAATTCATCCAAGCAA+AGG | 0.557485 | 4.3:-5488920 | None:intergenic |
| CTTGTTGTGCAGGGTCCTGG+TGG | 0.561938 | 4.3:+5490234 | MS.gene55732:intron |
| CCAAATCCAGGCCTTCCACC+AGG | 0.566613 | 4.3:-5490249 | None:intergenic |
| TGGTGAATTTGGAGGAGACA+AGG | 0.568317 | 4.3:+5489234 | MS.gene55732:CDS |
| GGGTGTATGCTATGCCAAGA+AGG | 0.572773 | 4.3:+5488801 | MS.gene55732:CDS |
| GATTTGGTGGTGACCGTGAT+GGG | 0.582420 | 4.3:+5489194 | MS.gene55732:CDS |
| GGGGTCCACCCAGATTTGAA+GGG | 0.582776 | 4.3:+5489164 | MS.gene55732:intron |
| GTAGCAGGAACAATCTCAGA+AGG | 0.584325 | 4.3:-5488994 | None:intergenic |
| CTCTCCCCTTCAAATCTGGG+TGG | 0.586327 | 4.3:-5489169 | None:intergenic |
| GGATTTGGTCGTGGATCTGG+TGG | 0.587952 | 4.3:+5490264 | MS.gene55732:CDS |
| AAGAAACAAGCTAAGCCACC+TGG | 0.590290 | 4.3:+5489021 | MS.gene55732:CDS |
| GGACCACCAAAAGGTCTACC+AGG | 0.594043 | 4.3:-5489039 | None:intergenic |
| AATAAGCTTACCCCAAATGA+GGG | 0.606777 | 4.3:-5489280 | None:intergenic |
| GGTCCTCGTGGTGAATTTGG+AGG | 0.607108 | 4.3:+5489226 | MS.gene55732:CDS |
| TATGCAGAGCTTCAAATCAA+GGG | 0.617426 | 4.3:+5488882 | MS.gene55732:CDS |
| GACCTCCACGGTACCCATCA+CGG | 0.617977 | 4.3:-5489207 | None:intergenic |
| GGTGACCGTGATGGGTACCG+TGG | 0.630160 | 4.3:+5489202 | MS.gene55732:CDS |
| AGATTTGGTGGTGACCGTGA+TGG | 0.637024 | 4.3:+5489193 | MS.gene55732:CDS |
| GGTGAATTTGGAGGAGACAA+GGG | 0.645452 | 4.3:+5489235 | MS.gene55732:CDS |
| GGGTCCACCCAGATTTGAAG+GGG | 0.646728 | 4.3:+5489165 | MS.gene55732:CDS |
| TGATTACAGACCCTCATTTG+GGG | 0.655373 | 4.3:+5489270 | MS.gene55732:CDS |
| GACCGTGATGGGTACCGTGG+AGG | 0.672660 | 4.3:+5489205 | MS.gene55732:CDS |
| ATTCACCACGAGGACCTCCA+CGG | 0.674159 | 4.3:-5489219 | None:intergenic |
| GGGTACCGTGGAGGTCCTCG+TGG | 0.696695 | 4.3:+5489214 | MS.gene55732:CDS |
| GAATTTGGAGGAGACAAGGG+AGG | 0.716593 | 4.3:+5489238 | MS.gene55732:CDS |
| TACCTAGGACGATCACCCTG+TGG | 0.729018 | 4.3:-5489060 | None:intergenic |
| CCACCAAAAGGTCTACCAGG+TGG | 0.744640 | 4.3:-5489036 | None:intergenic |
| TCTCCTCCAAATTCACCACG+AGG | 0.768981 | 4.3:-5489229 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAATTTATTTATCAACA+AGG | - | chr4.3:5489755-5489774 | None:intergenic | 10.0% |
| !! | AGTAAATTAAAATACTACAT+TGG | - | chr4.3:5490019-5490038 | None:intergenic | 15.0% |
| !! | CTGTTAAAAAATTTCAATTA+TGG | + | chr4.3:5489787-5489806 | MS.gene55732:intron | 15.0% |
| !!! | GTATTTTAATTTACTTATTC+TGG | + | chr4.3:5490024-5490043 | MS.gene55732:intron | 15.0% |
| !! | AATATAATATACCTTGGAAA+AGG | - | chr4.3:5488688-5488707 | None:intergenic | 20.0% |
| !! | GTGTTAAATATAATATACCT+TGG | - | chr4.3:5488694-5488713 | None:intergenic | 20.0% |
| !! | TCATATTCATAATCATAACT+AGG | + | chr4.3:5490094-5490113 | MS.gene55732:intron | 20.0% |
| !!! | CTGTTGTTTATTTTATTGTA+CGG | + | chr4.3:5489097-5489116 | MS.gene55732:intron | 20.0% |
| !!! | TTTTAATTTACTTATTCTGG+TGG | + | chr4.3:5490027-5490046 | MS.gene55732:intron | 20.0% |
| ! | CAAAAGAGAAATCTTGTATT+CGG | - | chr4.3:5489723-5489742 | None:intergenic | 25.0% |
| ! | GAAATCATATTCATAGGAAA+AGG | - | chr4.3:5489991-5490010 | None:intergenic | 25.0% |
| ! | GTGAATGAAATCATATTCAT+AGG | - | chr4.3:5489997-5490016 | None:intergenic | 25.0% |
| ! | TCAACCAAAAAAAAAACAGT+GGG | - | chr4.3:5490189-5490208 | None:intergenic | 25.0% |
| ! | TTCAACCAAAAAAAAAACAG+TGG | - | chr4.3:5490190-5490209 | None:intergenic | 25.0% |
| !!! | AAAATGGTTGATTTGTGTAT+AGG | + | chr4.3:5489143-5489162 | MS.gene55732:intron | 25.0% |
| !!! | AAATGGTTGATTTGTGTATA+GGG | + | chr4.3:5489144-5489163 | MS.gene55732:intron | 25.0% |
| AACCCTAGAATGAAGAATAA+GGG | - | chr4.3:5488578-5488597 | None:intergenic | 30.0% | |
| AATAGTGCTTACTTTAAGCA+CGG | + | chr4.3:5489588-5489607 | MS.gene55732:intron | 30.0% | |
| AGTACAATTGTATACAGGAA+TGG | - | chr4.3:5490149-5490168 | None:intergenic | 30.0% | |
| ATCCCTTATTCTTCATTCTA+GGG | + | chr4.3:5488573-5488592 | MS.gene55732:intron | 30.0% | |
| ATGAATACATAACATGCCAT+CGG | - | chr4.3:5489674-5489693 | None:intergenic | 30.0% | |
| ATGATAATACCAATGCTAAC+TGG | - | chr4.3:5489501-5489520 | None:intergenic | 30.0% | |
| CTACAATTACATTCGAAGTT+GGG | + | chr4.3:5489917-5489936 | MS.gene55732:intron | 30.0% | |
| GAAATGAAGTGATAATACCT+AGG | - | chr4.3:5489078-5489097 | None:intergenic | 30.0% | |
| GTAATAATTCATCCAAGCAA+AGG | - | chr4.3:5488923-5488942 | None:intergenic | 30.0% | |
| TATTCATCAACAACGCAATT+GGG | - | chr4.3:5489430-5489449 | None:intergenic | 30.0% | |
| TCTACAATTACATTCGAAGT+TGG | + | chr4.3:5489916-5489935 | MS.gene55732:intron | 30.0% | |
| TCTGAATTGTTGAATGTAGA+GGG | + | chr4.3:5488781-5488800 | MS.gene55732:intron | 30.0% | |
| TTATTCATCAACAACGCAAT+TGG | - | chr4.3:5489431-5489450 | None:intergenic | 30.0% | |
| TTCTGAATTGTTGAATGTAG+AGG | + | chr4.3:5488780-5488799 | MS.gene55732:intron | 30.0% | |
| TTGCTTGGATGAATTATTAC+TGG | + | chr4.3:5488923-5488942 | MS.gene55732:CDS | 30.0% | |
| ! | ACAATTGTACTCTCCTATTT+TGG | + | chr4.3:5490158-5490177 | MS.gene55732:intron | 30.0% |
| ! | CAATTGTACTCTCCTATTTT+GGG | + | chr4.3:5490159-5490178 | MS.gene55732:intron | 30.0% |
| ! | CGAATACAAGATTTCTCTTT+TGG | + | chr4.3:5489721-5489740 | MS.gene55732:intron | 30.0% |
| ! | TCTTTGTTTATACGTCTATG+TGG | + | chr4.3:5488732-5488751 | MS.gene55732:intron | 30.0% |
| ! | TTACGTGGGTTATTGAAAAA+TGG | + | chr4.3:5489127-5489146 | MS.gene55732:intron | 30.0% |
| !! | AAATTTGGAACATCGATTTC+TGG | - | chr4.3:5488847-5488866 | None:intergenic | 30.0% |
| !! | AATGGTTGATTTGTGTATAG+GGG | + | chr4.3:5489145-5489164 | MS.gene55732:intron | 30.0% |
| !! | TTTTGTCAGCTTCAAGTTTT+GGG | + | chr4.3:5489860-5489879 | MS.gene55732:intron | 30.0% |
| !! | TTTTTGTCAGCTTCAAGTTT+TGG | + | chr4.3:5489859-5489878 | MS.gene55732:intron | 30.0% |
| !!! | TAGTCCCACTGTTTTTTTTT+TGG | + | chr4.3:5490182-5490201 | MS.gene55732:intron | 30.0% |
| !!! | TGTACGGTTTTTTATTACGT+GGG | + | chr4.3:5489113-5489132 | MS.gene55732:intron | 30.0% |
| !!! | TTGTACGGTTTTTTATTACG+TGG | + | chr4.3:5489112-5489131 | MS.gene55732:intron | 30.0% |
| AATAAGCTTACCCCAAATGA+GGG | - | chr4.3:5489283-5489302 | None:intergenic | 35.0% | |
| AATACCAATGCTAACTGGAA+CGG | - | chr4.3:5489496-5489515 | None:intergenic | 35.0% | |
| AATCGATGTTCCAAATTTGC+AGG | + | chr4.3:5488849-5488868 | MS.gene55732:CDS | 35.0% | |
| AGCTTAATCACCTGCAAATT+TGG | - | chr4.3:5488862-5488881 | None:intergenic | 35.0% | |
| ATAGAACAAGTCTGAATTGC+AGG | - | chr4.3:5489890-5489909 | None:intergenic | 35.0% | |
| ATGTTAGAGAAACCTTTGCT+TGG | + | chr4.3:5488908-5488927 | MS.gene55732:CDS | 35.0% | |
| CATCCCTTATTCTTCATTCT+AGG | + | chr4.3:5488572-5488591 | MS.gene55732:intron | 35.0% | |
| CTCAATGTTGCATTTGTTTC+TGG | + | chr4.3:5489309-5489328 | MS.gene55732:intron | 35.0% | |
| GAACCCTAGAATGAAGAATA+AGG | - | chr4.3:5488579-5488598 | None:intergenic | 35.0% | |
| TAGAACAAGTCTGAATTGCA+GGG | - | chr4.3:5489889-5489908 | None:intergenic | 35.0% | |
| TATGCAGAGCTTCAAATCAA+GGG | + | chr4.3:5488882-5488901 | MS.gene55732:CDS | 35.0% | |
| TCATATGATGCTCAATTGTG+TGG | + | chr4.3:5489529-5489548 | MS.gene55732:intron | 35.0% | |
| TGCCAAATTGAAATCCTTCT+TGG | - | chr4.3:5488818-5488837 | None:intergenic | 35.0% | |
| TGCCAAGAAGGATTTCAATT+TGG | + | chr4.3:5488813-5488832 | MS.gene55732:CDS | 35.0% | |
| TTATGCAGAGCTTCAAATCA+AGG | + | chr4.3:5488881-5488900 | MS.gene55732:CDS | 35.0% | |
| ! | AGGAGAGTACAATTGTATAC+AGG | - | chr4.3:5490154-5490173 | None:intergenic | 35.0% |
| !! | TACTGGTTTCTCACTAATGA+CGG | + | chr4.3:5488940-5488959 | MS.gene55732:CDS | 35.0% |
| AATGTAATGTCTTGCGAAGC+AGG | + | chr4.3:5489465-5489484 | MS.gene55732:intron | 40.0% | |
| CAATAAGCTTACCCCAAATG+AGG | - | chr4.3:5489284-5489303 | None:intergenic | 40.0% | |
| CTGATTACAGACCCTCATTT+GGG | + | chr4.3:5489269-5489288 | MS.gene55732:CDS | 40.0% | |
| CTTGTATTCGGCAGTCAAAA+AGG | - | chr4.3:5489711-5489730 | None:intergenic | 40.0% | |
| TCTTTGAATTACGTGTGTCC+TGG | + | chr4.3:5489615-5489634 | MS.gene55732:intron | 40.0% | |
| TGATTACAGACCCTCATTTG+GGG | + | chr4.3:5489270-5489289 | MS.gene55732:CDS | 40.0% | |
| ! | ATCTGCAAGTACCTTTTCCA+AGG | + | chr4.3:5488674-5488693 | MS.gene55732:CDS | 40.0% |
| ! | GCTTGTTTCTTCAAAGTAGC+AGG | - | chr4.3:5489012-5489031 | None:intergenic | 40.0% |
| !! | ATGTTGCATTTGTTTCTGGC+TGG | + | chr4.3:5489313-5489332 | MS.gene55732:intron | 40.0% |
| AAGAAACAAGCTAAGCCACC+TGG | + | chr4.3:5489021-5489040 | MS.gene55732:CDS | 45.0% | |
| AATGAGGGTCTGTAATCAGC+AGG | - | chr4.3:5489268-5489287 | None:intergenic | 45.0% | |
| AATGTCTGTGTCTTGTCCGA+TGG | + | chr4.3:5489655-5489674 | MS.gene55732:intron | 45.0% | |
| AATTACGTGTGTCCTGGTGT+TGG | + | chr4.3:5489621-5489640 | MS.gene55732:intron | 45.0% | |
| ACAGTGGGACTACCCAAAAT+AGG | - | chr4.3:5490174-5490193 | None:intergenic | 45.0% | |
| CAATGCTAACTGGAACGGAA+CGG | - | chr4.3:5489491-5489510 | None:intergenic | 45.0% | |
| GCTGATTACAGACCCTCATT+TGG | + | chr4.3:5489268-5489287 | MS.gene55732:CDS | 45.0% | |
| GGTACTTGCAGATCTCTTTG+CGG | - | chr4.3:5488667-5488686 | None:intergenic | 45.0% | |
| GGTGAATTTGGAGGAGACAA+GGG | + | chr4.3:5489235-5489254 | MS.gene55732:CDS | 45.0% | |
| GTAGCAGGAACAATCTCAGA+AGG | - | chr4.3:5488997-5489016 | None:intergenic | 45.0% | |
| TAAGCATCTGAGCTAGTTGG+AGG | - | chr4.3:5490300-5490319 | None:intergenic | 45.0% | |
| TGGTGAATTTGGAGGAGACA+AGG | + | chr4.3:5489234-5489253 | MS.gene55732:CDS | 45.0% | |
| TTTGAAGGGGAGAGGAGATT+TGG | + | chr4.3:5489178-5489197 | MS.gene55732:CDS | 45.0% | |
| CGTTCCGTTCCAGTTAGCAT+TGG | + | chr4.3:5489489-5489508 | MS.gene55732:intron | 50.0% | |
| CTCCTCTCCCCTTCAAATCT+GGG | - | chr4.3:5489175-5489194 | None:intergenic | 50.0% | |
| GAATTTGGAGGAGACAAGGG+AGG | + | chr4.3:5489238-5489257 | MS.gene55732:CDS | 50.0% | |
| GGGTGTATGCTATGCCAAGA+AGG | + | chr4.3:5488801-5488820 | MS.gene55732:CDS | 50.0% | |
| TCTCCTCCAAATTCACCACG+AGG | - | chr4.3:5489232-5489251 | None:intergenic | 50.0% | |
| TCTCCTCTCCCCTTCAAATC+TGG | - | chr4.3:5489176-5489195 | None:intergenic | 50.0% | |
| TGACACTACATGCCAACACC+AGG | - | chr4.3:5489636-5489655 | None:intergenic | 50.0% | |
| ! | AAGCCACCTGGTAGACCTTT+TGG | + | chr4.3:5489033-5489052 | MS.gene55732:CDS | 50.0% |
| ! | CTGAGCTGTCTTGTTGTGCA+GGG | + | chr4.3:5490225-5490244 | MS.gene55732:intron | 50.0% |
| ! | GTCGTGGATCTGGTGGTTTT+GGG | + | chr4.3:5490271-5490290 | MS.gene55732:CDS | 50.0% |
| ! | TCTGAGCTGTCTTGTTGTGC+AGG | + | chr4.3:5490224-5490243 | MS.gene55732:intron | 50.0% |
| !! | AGACCTTTTGGTGGTCCACA+GGG | + | chr4.3:5489045-5489064 | MS.gene55732:CDS | 50.0% |
| !! | AGATTTGGTGGTGACCGTGA+TGG | + | chr4.3:5489193-5489212 | MS.gene55732:CDS | 50.0% |
| !! | GATTTGGTGGTGACCGTGAT+GGG | + | chr4.3:5489194-5489213 | MS.gene55732:CDS | 50.0% |
| !! | TAGACCTTTTGGTGGTCCAC+AGG | + | chr4.3:5489044-5489063 | MS.gene55732:CDS | 50.0% |
| !! | TCGTGGATCTGGTGGTTTTG+GGG | + | chr4.3:5490272-5490291 | MS.gene55732:CDS | 50.0% |
| AGGGGTCCACCCAGATTTGA+AGG | + | chr4.3:5489163-5489182 | MS.gene55732:intron | 55.0% | |
| ATTCACCACGAGGACCTCCA+CGG | - | chr4.3:5489222-5489241 | None:intergenic | 55.0% | |
| CACCCAGATTTGAAGGGGAG+AGG | + | chr4.3:5489170-5489189 | MS.gene55732:CDS | 55.0% | |
| CCACCAAAAGGTCTACCAGG+TGG | - | chr4.3:5489039-5489058 | None:intergenic | 55.0% | |
| CCAGATCCACGACCAAATCC+AGG | - | chr4.3:5490264-5490283 | None:intergenic | 55.0% | |
| CTCTCCCCTTCAAATCTGGG+TGG | - | chr4.3:5489172-5489191 | None:intergenic | 55.0% | |
| GAAGGGGAGAGGAGATTTGG+TGG | + | chr4.3:5489181-5489200 | MS.gene55732:CDS | 55.0% | |
| GGACCACCAAAAGGTCTACC+AGG | - | chr4.3:5489042-5489061 | None:intergenic | 55.0% | |
| GGAGGTCCTCGTGGTGAATT+TGG | + | chr4.3:5489223-5489242 | MS.gene55732:CDS | 55.0% | |
| GGGGTCCACCCAGATTTGAA+GGG | + | chr4.3:5489164-5489183 | MS.gene55732:intron | 55.0% | |
| GGGTCCACCCAGATTTGAAG+GGG | + | chr4.3:5489165-5489184 | MS.gene55732:CDS | 55.0% | |
| GGTCCTCGTGGTGAATTTGG+AGG | + | chr4.3:5489226-5489245 | MS.gene55732:CDS | 55.0% | |
| TACCTAGGACGATCACCCTG+TGG | - | chr4.3:5489063-5489082 | None:intergenic | 55.0% | |
| TCACCCTGTGGACCACCAAA+AGG | - | chr4.3:5489051-5489070 | None:intergenic | 55.0% | |
| ! | CCACCTGGTAGACCTTTTGG+TGG | + | chr4.3:5489036-5489055 | MS.gene55732:CDS | 55.0% |
| ! | CCTGGATTTGGTCGTGGATC+TGG | + | chr4.3:5490261-5490280 | MS.gene55732:CDS | 55.0% |
| ! | GGATTTGGTCGTGGATCTGG+TGG | + | chr4.3:5490264-5490283 | MS.gene55732:CDS | 55.0% |
| ! | GGTCGTGGATCTGGTGGTTT+TGG | + | chr4.3:5490270-5490289 | MS.gene55732:CDS | 55.0% |
| ! | TGTCTTGTTGTGCAGGGTCC+TGG | + | chr4.3:5490231-5490250 | MS.gene55732:intron | 55.0% |
| CCAAATCCAGGCCTTCCACC+AGG | - | chr4.3:5490252-5490271 | None:intergenic | 60.0% | |
| CCTGGTGGAAGGCCTGGATT+TGG | + | chr4.3:5490249-5490268 | MS.gene55732:CDS | 60.0% | |
| GACCTCCACGGTACCCATCA+CGG | - | chr4.3:5489210-5489229 | None:intergenic | 60.0% | |
| GTCCACAGGGTGATCGTCCT+AGG | + | chr4.3:5489058-5489077 | MS.gene55732:CDS | 60.0% | |
| TTGTGCAGGGTCCTGGTGGA+AGG | + | chr4.3:5490238-5490257 | MS.gene55732:intron | 60.0% | |
| ! | CTTGTTGTGCAGGGTCCTGG+TGG | + | chr4.3:5490234-5490253 | MS.gene55732:intron | 60.0% |
| ! | GGAAGGCCTGGATTTGGTCG+TGG | + | chr4.3:5490255-5490274 | MS.gene55732:CDS | 60.0% |
| !! | GACCGTGATGGGTACCGTGG+AGG | + | chr4.3:5489205-5489224 | MS.gene55732:CDS | 65.0% |
| !! | GGTGACCGTGATGGGTACCG+TGG | + | chr4.3:5489202-5489221 | MS.gene55732:CDS | 65.0% |
| CAGGGTCCTGGTGGAAGGCC+TGG | + | chr4.3:5490243-5490262 | MS.gene55732:intron | 70.0% | |
| ! | GGGTACCGTGGAGGTCCTCG+TGG | + | chr4.3:5489214-5489233 | MS.gene55732:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 5488564 | 5490320 | 5488564 | ID=MS.gene55732 |
| chr4.3 | mRNA | 5488564 | 5490320 | 5488564 | ID=MS.gene55732.t1;Parent=MS.gene55732 |
| chr4.3 | exon | 5488564 | 5488566 | 5488564 | ID=MS.gene55732.t1.exon1;Parent=MS.gene55732.t1 |
| chr4.3 | CDS | 5488564 | 5488566 | 5488564 | ID=cds.MS.gene55732.t1;Parent=MS.gene55732.t1 |
| chr4.3 | exon | 5488647 | 5488695 | 5488647 | ID=MS.gene55732.t1.exon2;Parent=MS.gene55732.t1 |
| chr4.3 | CDS | 5488647 | 5488695 | 5488647 | ID=cds.MS.gene55732.t1;Parent=MS.gene55732.t1 |
| chr4.3 | exon | 5488800 | 5489079 | 5488800 | ID=MS.gene55732.t1.exon3;Parent=MS.gene55732.t1 |
| chr4.3 | CDS | 5488800 | 5489079 | 5488800 | ID=cds.MS.gene55732.t1;Parent=MS.gene55732.t1 |
| chr4.3 | exon | 5489165 | 5489291 | 5489165 | ID=MS.gene55732.t1.exon4;Parent=MS.gene55732.t1 |
| chr4.3 | CDS | 5489165 | 5489291 | 5489165 | ID=cds.MS.gene55732.t1;Parent=MS.gene55732.t1 |
| chr4.3 | exon | 5490246 | 5490320 | 5490246 | ID=MS.gene55732.t1.exon5;Parent=MS.gene55732.t1 |
| chr4.3 | CDS | 5490246 | 5490320 | 5490246 | ID=cds.MS.gene55732.t1;Parent=MS.gene55732.t1 |
| Gene Sequence |
| Protein sequence |
