Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89721.t1 | XP_013447094.1 | 100 | 177 | 0 | 0 | 1 | 177 | 1 | 177 | 5.20E-81 | 310.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89721.t1 | P0DKK8 | 84.8 | 125 | 17 | 2 | 1 | 123 | 1 | 125 | 1.1e-55 | 217.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89721.t1 | I3SV05 | 100.0 | 177 | 0 | 0 | 1 | 177 | 1 | 177 | 3.7e-81 | 310.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049255 | MS.gene89721 | 0.838162 | 3.39E-57 | -1.69E-46 |
| MS.gene049340 | MS.gene89721 | 0.810621 | 1.05E-50 | -1.69E-46 |
| MS.gene049341 | MS.gene89721 | 0.839847 | 1.24E-57 | -1.69E-46 |
| MS.gene049580 | MS.gene89721 | 0.816519 | 5.30E-52 | -1.69E-46 |
| MS.gene049756 | MS.gene89721 | 0.821183 | 4.62E-53 | -1.69E-46 |
| MS.gene049821 | MS.gene89721 | 0.80398 | 2.69E-49 | -1.69E-46 |
| MS.gene049824 | MS.gene89721 | 0.80559 | 1.24E-49 | -1.69E-46 |
| MS.gene049825 | MS.gene89721 | 0.833368 | 5.55E-56 | -1.69E-46 |
| MS.gene049873 | MS.gene89721 | 0.811383 | 7.20E-51 | -1.69E-46 |
| MS.gene049887 | MS.gene89721 | 0.819828 | 9.46E-53 | -1.69E-46 |
| MS.gene050277 | MS.gene89721 | 0.898658 | 4.28E-77 | -1.69E-46 |
| MS.gene050290 | MS.gene89721 | 0.828419 | 9.08E-55 | -1.69E-46 |
| MS.gene050303 | MS.gene89721 | 0.862407 | 5.18E-64 | -1.69E-46 |
| MS.gene050320 | MS.gene89721 | 0.811911 | 5.52E-51 | -1.69E-46 |
| MS.gene050721 | MS.gene89721 | 0.80072 | 1.26E-48 | -1.69E-46 |
| MS.gene050752 | MS.gene89721 | 0.802924 | 4.45E-49 | -1.69E-46 |
| MS.gene050807 | MS.gene89721 | 0.816807 | 4.57E-52 | -1.69E-46 |
| MS.gene050815 | MS.gene89721 | 0.814404 | 1.57E-51 | -1.69E-46 |
| MS.gene050838 | MS.gene89721 | 0.85282 | 3.59E-61 | -1.69E-46 |
| MS.gene050916 | MS.gene89721 | 0.84936 | 3.40E-60 | -1.69E-46 |
| MS.gene051063 | MS.gene89721 | 0.875948 | 2.06E-68 | -1.69E-46 |
| MS.gene051245 | MS.gene89721 | 0.824313 | 8.64E-54 | -1.69E-46 |
| MS.gene051328 | MS.gene89721 | 0.844029 | 9.74E-59 | -1.69E-46 |
| MS.gene051330 | MS.gene89721 | 0.89998 | 1.16E-77 | -1.69E-46 |
| MS.gene05134 | MS.gene89721 | 0.844727 | 6.32E-59 | -1.69E-46 |
| MS.gene051451 | MS.gene89721 | 0.84132 | 5.10E-58 | -1.69E-46 |
| MS.gene051633 | MS.gene89721 | 0.833925 | 4.03E-56 | -1.69E-46 |
| MS.gene051687 | MS.gene89721 | 0.827623 | 1.41E-54 | -1.69E-46 |
| MS.gene051700 | MS.gene89721 | 0.853857 | 1.81E-61 | -1.69E-46 |
| MS.gene051746 | MS.gene89721 | 0.907062 | 7.60E-81 | -1.69E-46 |
| MS.gene051748 | MS.gene89721 | 0.891017 | 5.83E-74 | -1.69E-46 |
| MS.gene051756 | MS.gene89721 | 0.823007 | 1.75E-53 | -1.69E-46 |
| MS.gene051757 | MS.gene89721 | 0.833686 | 4.62E-56 | -1.69E-46 |
| MS.gene051850 | MS.gene89721 | 0.847078 | 1.45E-59 | -1.69E-46 |
| MS.gene05188 | MS.gene89721 | 0.840542 | 8.17E-58 | -1.69E-46 |
| MS.gene051903 | MS.gene89721 | 0.901508 | 2.50E-78 | -1.69E-46 |
| MS.gene051975 | MS.gene89721 | 0.820157 | 7.96E-53 | -1.69E-46 |
| MS.gene052133 | MS.gene89721 | 0.846264 | 2.42E-59 | -1.69E-46 |
| MS.gene052202 | MS.gene89721 | 0.818626 | 1.78E-52 | -1.69E-46 |
| MS.gene052256 | MS.gene89721 | 0.801259 | 9.80E-49 | -1.69E-46 |
| MS.gene052286 | MS.gene89721 | 0.829548 | 4.84E-55 | -1.69E-46 |
| MS.gene052302 | MS.gene89721 | 0.860206 | 2.43E-63 | -1.69E-46 |
| MS.gene052376 | MS.gene89721 | 0.86639 | 2.95E-65 | -1.69E-46 |
| MS.gene052856 | MS.gene89721 | 0.819544 | 1.10E-52 | -1.69E-46 |
| MS.gene052879 | MS.gene89721 | 0.816774 | 4.65E-52 | -1.69E-46 |
| MS.gene052880 | MS.gene89721 | 0.800474 | 1.42E-48 | -1.69E-46 |
| MS.gene052947 | MS.gene89721 | 0.921985 | 1.77E-88 | -1.69E-46 |
| MS.gene053109 | MS.gene89721 | 0.84492 | 5.61E-59 | -1.69E-46 |
| MS.gene053437 | MS.gene89721 | 0.803658 | 3.14E-49 | -1.69E-46 |
| MS.gene053581 | MS.gene89721 | 0.808495 | 3.01E-50 | -1.69E-46 |
| MS.gene053952 | MS.gene89721 | 0.852076 | 5.85E-61 | -1.69E-46 |
| MS.gene054403 | MS.gene89721 | 0.802517 | 5.40E-49 | -1.69E-46 |
| MS.gene05469 | MS.gene89721 | 0.800945 | 1.14E-48 | -1.69E-46 |
| MS.gene054937 | MS.gene89721 | 0.829197 | 5.89E-55 | -1.69E-46 |
| MS.gene055162 | MS.gene89721 | 0.828665 | 7.92E-55 | -1.69E-46 |
| MS.gene055424 | MS.gene89721 | 0.82782 | 1.27E-54 | -1.69E-46 |
| MS.gene055466 | MS.gene89721 | 0.803438 | 3.49E-49 | -1.69E-46 |
| MS.gene055468 | MS.gene89721 | 0.813417 | 2.59E-51 | -1.69E-46 |
| MS.gene055555 | MS.gene89721 | 0.823821 | 1.13E-53 | -1.69E-46 |
| MS.gene055580 | MS.gene89721 | -0.833476 | 5.22E-56 | -1.69E-46 |
| MS.gene055591 | MS.gene89721 | -0.820768 | 5.76E-53 | -1.69E-46 |
| MS.gene055603 | MS.gene89721 | 0.810636 | 1.04E-50 | -1.69E-46 |
| MS.gene055780 | MS.gene89721 | 0.818436 | 1.96E-52 | -1.69E-46 |
| MS.gene055808 | MS.gene89721 | 0.871669 | 5.73E-67 | -1.69E-46 |
| MS.gene056043 | MS.gene89721 | -0.843778 | 1.14E-58 | -1.69E-46 |
| MS.gene056075 | MS.gene89721 | 0.866582 | 2.57E-65 | -1.69E-46 |
| MS.gene056091 | MS.gene89721 | 0.875622 | 2.67E-68 | -1.69E-46 |
| MS.gene056215 | MS.gene89721 | 0.819982 | 8.72E-53 | -1.69E-46 |
| MS.gene056403 | MS.gene89721 | 0.805405 | 1.36E-49 | -1.69E-46 |
| MS.gene056432 | MS.gene89721 | 0.836637 | 8.33E-57 | -1.69E-46 |
| MS.gene056580 | MS.gene89721 | 0.816732 | 4.75E-52 | -1.69E-46 |
| MS.gene056601 | MS.gene89721 | 0.8458 | 3.24E-59 | -1.69E-46 |
| MS.gene056605 | MS.gene89721 | 0.807337 | 5.31E-50 | -1.69E-46 |
| MS.gene056631 | MS.gene89721 | 0.925227 | 2.44E-90 | -1.69E-46 |
| MS.gene056760 | MS.gene89721 | 0.835053 | 2.10E-56 | -1.69E-46 |
| MS.gene056986 | MS.gene89721 | 0.819919 | 9.02E-53 | -1.69E-46 |
| MS.gene057057 | MS.gene89721 | 0.832045 | 1.18E-55 | -1.69E-46 |
| MS.gene057094 | MS.gene89721 | 0.882848 | 7.38E-71 | -1.69E-46 |
| MS.gene057140 | MS.gene89721 | 0.832198 | 1.08E-55 | -1.69E-46 |
| MS.gene057234 | MS.gene89721 | 0.849128 | 3.94E-60 | -1.69E-46 |
| MS.gene057705 | MS.gene89721 | 0.862407 | 5.18E-64 | -1.69E-46 |
| MS.gene058055 | MS.gene89721 | 0.818343 | 2.06E-52 | -1.69E-46 |
| MS.gene058084 | MS.gene89721 | 0.839777 | 1.29E-57 | -1.69E-46 |
| MS.gene05809 | MS.gene89721 | 0.836556 | 8.73E-57 | -1.69E-46 |
| MS.gene058182 | MS.gene89721 | 0.810484 | 1.13E-50 | -1.69E-46 |
| MS.gene058238 | MS.gene89721 | 0.861148 | 1.26E-63 | -1.69E-46 |
| MS.gene058852 | MS.gene89721 | 0.810102 | 1.36E-50 | -1.69E-46 |
| MS.gene058906 | MS.gene89721 | 0.912838 | 1.23E-83 | -1.69E-46 |
| MS.gene058908 | MS.gene89721 | 0.812646 | 3.82E-51 | -1.69E-46 |
| MS.gene058911 | MS.gene89721 | 0.819551 | 1.09E-52 | -1.69E-46 |
| MS.gene059171 | MS.gene89721 | 0.813656 | 2.29E-51 | -1.69E-46 |
| MS.gene059227 | MS.gene89721 | 0.815393 | 9.46E-52 | -1.69E-46 |
| MS.gene05953 | MS.gene89721 | 0.805084 | 1.58E-49 | -1.69E-46 |
| MS.gene05954 | MS.gene89721 | 0.820532 | 6.53E-53 | -1.69E-46 |
| MS.gene059830 | MS.gene89721 | 0.807584 | 4.71E-50 | -1.69E-46 |
| MS.gene059898 | MS.gene89721 | 0.836757 | 7.76E-57 | -1.69E-46 |
| MS.gene06001 | MS.gene89721 | 0.986295 | 2.60E-166 | -1.69E-46 |
| MS.gene06011 | MS.gene89721 | 0.833092 | 6.50E-56 | -1.69E-46 |
| MS.gene060429 | MS.gene89721 | 0.894455 | 2.43E-75 | -1.69E-46 |
| MS.gene060586 | MS.gene89721 | 0.831784 | 1.37E-55 | -1.69E-46 |
| MS.gene060619 | MS.gene89721 | 0.80507 | 1.59E-49 | -1.69E-46 |
| MS.gene060830 | MS.gene89721 | 0.817422 | 3.32E-52 | -1.69E-46 |
| MS.gene060917 | MS.gene89721 | 0.842054 | 3.27E-58 | -1.69E-46 |
| MS.gene061145 | MS.gene89721 | 0.825157 | 5.46E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene89721 | MS.gene056722 | PPI |
| MS.gene93753 | MS.gene89721 | PPI |
| MS.gene001756 | MS.gene89721 | PPI |
| MS.gene89721 | MS.gene040115 | PPI |
| MS.gene019556 | MS.gene89721 | PPI |
| MS.gene94561 | MS.gene89721 | PPI |
| MS.gene047001 | MS.gene89721 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89721.t1 | MTR_8g098850 | 100.000 | 177 | 0 | 0 | 1 | 177 | 1 | 177 | 6.13e-128 | 356 |
| MS.gene89721.t1 | MTR_5g010025 | 93.889 | 180 | 8 | 1 | 1 | 177 | 28 | 207 | 1.53e-120 | 339 |
| MS.gene89721.t1 | MTR_8g098850 | 100.000 | 132 | 0 | 0 | 46 | 177 | 1 | 132 | 2.28e-90 | 260 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89721.t1 | AT4G25740 | 82.237 | 152 | 25 | 1 | 1 | 152 | 1 | 150 | 1.64e-79 | 234 |
| MS.gene89721.t1 | AT5G52650 | 82.468 | 154 | 25 | 1 | 1 | 152 | 1 | 154 | 4.09e-74 | 220 |
| MS.gene89721.t1 | AT5G41520 | 75.817 | 153 | 31 | 5 | 1 | 150 | 1 | 150 | 6.56e-70 | 210 |
| MS.gene89721.t1 | AT4G25740 | 64.706 | 170 | 30 | 1 | 1 | 170 | 1 | 140 | 6.91e-60 | 183 |
| MS.gene89721.t1 | AT5G41520 | 75.701 | 107 | 21 | 4 | 46 | 150 | 1 | 104 | 7.82e-43 | 139 |
Find 64 sgRNAs with CRISPR-Local
Find 129 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCTTAATCACCTGCAAATT+TGG | 0.141151 | 4.4:-5332878 | None:intergenic |
| GGTCGTGGATCTGGTGGTTT+TGG | 0.201005 | 4.4:+5334319 | MS.gene89721:CDS |
| TGCCAAATTGAAATCCTTCT+TGG | 0.227664 | 4.4:-5332834 | None:intergenic |
| TCTCCTCTCCCCTTCAAATC+TGG | 0.263606 | 4.4:-5333192 | None:intergenic |
| GGAGGTCCTCGTGGTGAATT+TGG | 0.264246 | 4.4:+5333242 | MS.gene89721:CDS |
| TTGCTTGGATGAATTATTAC+TGG | 0.274951 | 4.4:+5332942 | MS.gene89721:CDS |
| TGCCAAGAAGGATTTCAATT+TGG | 0.277902 | 4.4:+5332832 | MS.gene89721:CDS |
| TTTGAAGGGGAGAGGAGATT+TGG | 0.304539 | 4.4:+5333197 | MS.gene89721:CDS |
| AAATTTGGAACATCGATTTC+TGG | 0.305282 | 4.4:-5332863 | None:intergenic |
| CTGATTACAGACCCTCATTT+GGG | 0.309337 | 4.4:+5333288 | MS.gene89721:CDS |
| CAGGGTCCTGGTGGAAGGCC+TGG | 0.329758 | 4.4:+5334292 | MS.gene89721:intron |
| GCTGATTACAGACCCTCATT+TGG | 0.333812 | 4.4:+5333287 | MS.gene89721:CDS |
| AAGCCACCTGGTAGACCTTT+TGG | 0.340230 | 4.4:+5333052 | MS.gene89721:CDS |
| TGTCTTGTTGTGCAGGGTCC+TGG | 0.359491 | 4.4:+5334280 | MS.gene89721:intron |
| CCTGGATTTGGTCGTGGATC+TGG | 0.375183 | 4.4:+5334310 | MS.gene89721:CDS |
| CCTGGTGGAAGGCCTGGATT+TGG | 0.398371 | 4.4:+5334298 | MS.gene89721:CDS |
| AATCGATGTTCCAAATTTGC+AGG | 0.408613 | 4.4:+5332868 | MS.gene89721:CDS |
| CTCCTCTCCCCTTCAAATCT+GGG | 0.426727 | 4.4:-5333191 | None:intergenic |
| GCTTGTTTCTTCAAAGTAGC+AGG | 0.433371 | 4.4:-5333028 | None:intergenic |
| TTGTGCAGGGTCCTGGTGGA+AGG | 0.448944 | 4.4:+5334287 | MS.gene89721:intron |
| CTTTAAGCATCTGAGCTAGT+TGG | 0.449096 | 4.4:-5334349 | None:intergenic |
| GAAGGGGAGAGGAGATTTGG+TGG | 0.472199 | 4.4:+5333200 | MS.gene89721:CDS |
| TTATGCAGAGCTTCAAATCA+AGG | 0.477684 | 4.4:+5332900 | MS.gene89721:CDS |
| AGGGGTCCACCCAGATTTGA+AGG | 0.489080 | 4.4:+5333182 | MS.gene89721:intron |
| GGTACTTGCAGATCTCTTTG+CGG | 0.502239 | 4.4:-5332683 | None:intergenic |
| AATATAATATACCTTGGAAA+AGG | 0.503793 | 4.4:-5332704 | None:intergenic |
| TACTGGTTTCTCACTAATGA+CGG | 0.504599 | 4.4:+5332959 | MS.gene89721:CDS |
| CAATAAGCTTACCCCAAATG+AGG | 0.509168 | 4.4:-5333300 | None:intergenic |
| GTCCACAGGGTGATCGTCCT+AGG | 0.525900 | 4.4:+5333077 | MS.gene89721:CDS |
| TAAGCATCTGAGCTAGTTGG+AGG | 0.527305 | 4.4:-5334346 | None:intergenic |
| CACCCAGATTTGAAGGGGAG+AGG | 0.528752 | 4.4:+5333189 | MS.gene89721:CDS |
| ATGTTAGAGAAACCTTTGCT+TGG | 0.529285 | 4.4:+5332927 | MS.gene89721:CDS |
| GGAAGGCCTGGATTTGGTCG+TGG | 0.535608 | 4.4:+5334304 | MS.gene89721:CDS |
| CCAGATCCACGACCAAATCC+AGG | 0.536843 | 4.4:-5334310 | None:intergenic |
| TCACCCTGTGGACCACCAAA+AGG | 0.552245 | 4.4:-5333067 | None:intergenic |
| AATGAGGGTCTGTAATCAGC+AGG | 0.552369 | 4.4:-5333284 | None:intergenic |
| GTAATAATTCATCCAAGCAA+AGG | 0.557485 | 4.4:-5332939 | None:intergenic |
| CTTGTTGTGCAGGGTCCTGG+TGG | 0.561938 | 4.4:+5334283 | MS.gene89721:intron |
| CCAAATCCAGGCCTTCCACC+AGG | 0.566613 | 4.4:-5334298 | None:intergenic |
| TGGTGAATTTGGAGGAGACA+AGG | 0.568317 | 4.4:+5333253 | MS.gene89721:CDS |
| GGGTGTATGCTATGCCAAGA+AGG | 0.572773 | 4.4:+5332820 | MS.gene89721:CDS |
| GATTTGGTGGTGACCGTGAT+GGG | 0.582420 | 4.4:+5333213 | MS.gene89721:CDS |
| GGGGTCCACCCAGATTTGAA+GGG | 0.582776 | 4.4:+5333183 | MS.gene89721:intron |
| GTAGCAGGAACAATCTCAGA+AGG | 0.584325 | 4.4:-5333013 | None:intergenic |
| CTCTCCCCTTCAAATCTGGG+TGG | 0.586327 | 4.4:-5333188 | None:intergenic |
| GGATTTGGTCGTGGATCTGG+TGG | 0.587952 | 4.4:+5334313 | MS.gene89721:CDS |
| AAGAAACAAGCTAAGCCACC+TGG | 0.590290 | 4.4:+5333040 | MS.gene89721:CDS |
| GGACCACCAAAAGGTCTACC+AGG | 0.594043 | 4.4:-5333058 | None:intergenic |
| AATAAGCTTACCCCAAATGA+GGG | 0.606777 | 4.4:-5333299 | None:intergenic |
| GGTCCTCGTGGTGAATTTGG+AGG | 0.607108 | 4.4:+5333245 | MS.gene89721:CDS |
| TATGCAGAGCTTCAAATCAA+GGG | 0.617426 | 4.4:+5332901 | MS.gene89721:CDS |
| GACCTCCACGGTACCCATCA+CGG | 0.617977 | 4.4:-5333226 | None:intergenic |
| GGTGACCGTGATGGGTACCG+TGG | 0.630160 | 4.4:+5333221 | MS.gene89721:CDS |
| AGATTTGGTGGTGACCGTGA+TGG | 0.637024 | 4.4:+5333212 | MS.gene89721:CDS |
| GGTGAATTTGGAGGAGACAA+GGG | 0.645452 | 4.4:+5333254 | MS.gene89721:CDS |
| GGGTCCACCCAGATTTGAAG+GGG | 0.646728 | 4.4:+5333184 | MS.gene89721:CDS |
| TGATTACAGACCCTCATTTG+GGG | 0.655373 | 4.4:+5333289 | MS.gene89721:CDS |
| GACCGTGATGGGTACCGTGG+AGG | 0.672660 | 4.4:+5333224 | MS.gene89721:CDS |
| ATTCACCACGAGGACCTCCA+CGG | 0.674159 | 4.4:-5333238 | None:intergenic |
| GGGTACCGTGGAGGTCCTCG+TGG | 0.696695 | 4.4:+5333233 | MS.gene89721:CDS |
| GAATTTGGAGGAGACAAGGG+AGG | 0.716593 | 4.4:+5333257 | MS.gene89721:CDS |
| TACCTAGGACGATCACCCTG+TGG | 0.729018 | 4.4:-5333079 | None:intergenic |
| CCACCAAAAGGTCTACCAGG+TGG | 0.744640 | 4.4:-5333055 | None:intergenic |
| TCTCCTCCAAATTCACCACG+AGG | 0.768981 | 4.4:-5333248 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAATTTATTTATCAACA+AGG | - | chr4.4:5333803-5333822 | None:intergenic | 10.0% |
| !! | TTGTTAAAAAATTTCAATTA+TGG | + | chr4.4:5333836-5333855 | MS.gene89721:intron | 10.0% |
| !! | AGTAAATTAAAATACTACAT+TGG | - | chr4.4:5334068-5334087 | None:intergenic | 15.0% |
| !!! | GTATTTTAATTTACTTATTC+TGG | + | chr4.4:5334073-5334092 | MS.gene89721:intron | 15.0% |
| !!! | TGTTTAAATTTTTCAAGTAT+GGG | + | chr4.4:5333770-5333789 | MS.gene89721:intron | 15.0% |
| !!! | TTGTTTAAATTTTTCAAGTA+TGG | + | chr4.4:5333769-5333788 | MS.gene89721:intron | 15.0% |
| !! | AATATAATATACCTTGGAAA+AGG | - | chr4.4:5332707-5332726 | None:intergenic | 20.0% |
| !! | GTGTTAAATATAATATACCT+TGG | - | chr4.4:5332713-5332732 | None:intergenic | 20.0% |
| !! | TCATATTCATAATCATAACT+AGG | + | chr4.4:5334143-5334162 | MS.gene89721:intron | 20.0% |
| !! | TTGAAAAATTTAAACAAGTC+AGG | - | chr4.4:5333766-5333785 | None:intergenic | 20.0% |
| !!! | CTGTTGTTTATTTTATTGTA+CGG | + | chr4.4:5333116-5333135 | MS.gene89721:intron | 20.0% |
| !!! | TTTTAATTTACTTATTCTGG+TGG | + | chr4.4:5334076-5334095 | MS.gene89721:intron | 20.0% |
| ! | ATAAATCCATAACATGTCAT+CGG | - | chr4.4:5333693-5333712 | None:intergenic | 25.0% |
| ! | CAAAAGAGAAATCTTGTATT+CGG | - | chr4.4:5333742-5333761 | None:intergenic | 25.0% |
| ! | GAAATCATATTCATAGGAAA+AGG | - | chr4.4:5334040-5334059 | None:intergenic | 25.0% |
| ! | GTGAATGAAATCATATTCAT+AGG | - | chr4.4:5334046-5334065 | None:intergenic | 25.0% |
| ! | TCAACCAAAAAAAAAACAGT+GGG | - | chr4.4:5334238-5334257 | None:intergenic | 25.0% |
| ! | TTCAACCAAAAAAAAAACAG+TGG | - | chr4.4:5334239-5334258 | None:intergenic | 25.0% |
| !!! | AAAATGGTTGATTTGTGTAT+AGG | + | chr4.4:5333162-5333181 | MS.gene89721:intron | 25.0% |
| !!! | AAATGGTTGATTTGTGTATA+GGG | + | chr4.4:5333163-5333182 | MS.gene89721:intron | 25.0% |
| AACCCTAGAATGAAGAATAA+GGG | - | chr4.4:5332597-5332616 | None:intergenic | 30.0% | |
| AATAGTGCTTACTTTAAGCA+CGG | + | chr4.4:5333607-5333626 | MS.gene89721:intron | 30.0% | |
| AGTACAATTGTATACAGGAA+TGG | - | chr4.4:5334198-5334217 | None:intergenic | 30.0% | |
| ATCCCTTATTCTTCATTCTA+GGG | + | chr4.4:5332592-5332611 | MS.gene89721:intron | 30.0% | |
| ATGATAATACCAATGCTAAC+TGG | - | chr4.4:5333520-5333539 | None:intergenic | 30.0% | |
| CTACAATTACATTCGAAGTT+GGG | + | chr4.4:5333966-5333985 | MS.gene89721:intron | 30.0% | |
| GAAATGAAGTGATAATACCT+AGG | - | chr4.4:5333097-5333116 | None:intergenic | 30.0% | |
| GTAATAATTCATCCAAGCAA+AGG | - | chr4.4:5332942-5332961 | None:intergenic | 30.0% | |
| TATTCATCAACAACGCAATT+GGG | - | chr4.4:5333449-5333468 | None:intergenic | 30.0% | |
| TCTACAATTACATTCGAAGT+TGG | + | chr4.4:5333965-5333984 | MS.gene89721:intron | 30.0% | |
| TCTGAATTGTTGAATGTAGA+GGG | + | chr4.4:5332800-5332819 | MS.gene89721:intron | 30.0% | |
| TTATTCATCAACAACGCAAT+TGG | - | chr4.4:5333450-5333469 | None:intergenic | 30.0% | |
| TTCTGAATTGTTGAATGTAG+AGG | + | chr4.4:5332799-5332818 | MS.gene89721:intron | 30.0% | |
| TTGCTTGGATGAATTATTAC+TGG | + | chr4.4:5332942-5332961 | MS.gene89721:CDS | 30.0% | |
| ! | ACAATTGTACTCTCCTATTT+TGG | + | chr4.4:5334207-5334226 | MS.gene89721:intron | 30.0% |
| ! | CAATTGTACTCTCCTATTTT+GGG | + | chr4.4:5334208-5334227 | MS.gene89721:intron | 30.0% |
| ! | TTACGTGGGTTATTGAAAAA+TGG | + | chr4.4:5333146-5333165 | MS.gene89721:intron | 30.0% |
| !! | AAATTTGGAACATCGATTTC+TGG | - | chr4.4:5332866-5332885 | None:intergenic | 30.0% |
| !! | AATGGTTGATTTGTGTATAG+GGG | + | chr4.4:5333164-5333183 | MS.gene89721:intron | 30.0% |
| !! | TTTTGTCAGCTTCAAGTTTT+GGG | + | chr4.4:5333909-5333928 | MS.gene89721:intron | 30.0% |
| !! | TTTTTGTCAGCTTCAAGTTT+TGG | + | chr4.4:5333908-5333927 | MS.gene89721:intron | 30.0% |
| !!! | TAGTCCCACTGTTTTTTTTT+TGG | + | chr4.4:5334231-5334250 | MS.gene89721:intron | 30.0% |
| !!! | TGTACGGTTTTTTATTACGT+GGG | + | chr4.4:5333132-5333151 | MS.gene89721:intron | 30.0% |
| !!! | TTGTACGGTTTTTTATTACG+TGG | + | chr4.4:5333131-5333150 | MS.gene89721:intron | 30.0% |
| AATAAGCTTACCCCAAATGA+GGG | - | chr4.4:5333302-5333321 | None:intergenic | 35.0% | |
| AATACCAATGCTAACTGGAA+CGG | - | chr4.4:5333515-5333534 | None:intergenic | 35.0% | |
| AATCGATGTTCCAAATTTGC+AGG | + | chr4.4:5332868-5332887 | MS.gene89721:CDS | 35.0% | |
| AGCTTAATCACCTGCAAATT+TGG | - | chr4.4:5332881-5332900 | None:intergenic | 35.0% | |
| ATAGAACAAGTCTGAATTGC+AGG | - | chr4.4:5333939-5333958 | None:intergenic | 35.0% | |
| ATGTTAGAGAAACCTTTGCT+TGG | + | chr4.4:5332927-5332946 | MS.gene89721:CDS | 35.0% | |
| CATCCCTTATTCTTCATTCT+AGG | + | chr4.4:5332591-5332610 | MS.gene89721:intron | 35.0% | |
| CTCAATGTTGCATTTGTTTC+TGG | + | chr4.4:5333328-5333347 | MS.gene89721:intron | 35.0% | |
| GAACCCTAGAATGAAGAATA+AGG | - | chr4.4:5332598-5332617 | None:intergenic | 35.0% | |
| TAGAACAAGTCTGAATTGCA+GGG | - | chr4.4:5333938-5333957 | None:intergenic | 35.0% | |
| TATGCAGAGCTTCAAATCAA+GGG | + | chr4.4:5332901-5332920 | MS.gene89721:CDS | 35.0% | |
| TCATATGATGCTCAATTGTG+TGG | + | chr4.4:5333548-5333567 | MS.gene89721:intron | 35.0% | |
| TGCCAAATTGAAATCCTTCT+TGG | - | chr4.4:5332837-5332856 | None:intergenic | 35.0% | |
| TGCCAAGAAGGATTTCAATT+TGG | + | chr4.4:5332832-5332851 | MS.gene89721:CDS | 35.0% | |
| TTATGCAGAGCTTCAAATCA+AGG | + | chr4.4:5332900-5332919 | MS.gene89721:CDS | 35.0% | |
| ! | AGGAGAGTACAATTGTATAC+AGG | - | chr4.4:5334203-5334222 | None:intergenic | 35.0% |
| !! | TACTGGTTTCTCACTAATGA+CGG | + | chr4.4:5332959-5332978 | MS.gene89721:CDS | 35.0% |
| AATGTAATGTCTTGCGAAGC+AGG | + | chr4.4:5333484-5333503 | MS.gene89721:intron | 40.0% | |
| CAATAAGCTTACCCCAAATG+AGG | - | chr4.4:5333303-5333322 | None:intergenic | 40.0% | |
| CTGATTACAGACCCTCATTT+GGG | + | chr4.4:5333288-5333307 | MS.gene89721:CDS | 40.0% | |
| CTTGTATTCGGCAGTCAAAA+AGG | - | chr4.4:5333730-5333749 | None:intergenic | 40.0% | |
| TCTTGTCCGATGACATGTTA+TGG | + | chr4.4:5333684-5333703 | MS.gene89721:intron | 40.0% | |
| TCTTTGAATTACGTGTGTCC+TGG | + | chr4.4:5333634-5333653 | MS.gene89721:intron | 40.0% | |
| TGATTACAGACCCTCATTTG+GGG | + | chr4.4:5333289-5333308 | MS.gene89721:CDS | 40.0% | |
| ! | ATCTGCAAGTACCTTTTCCA+AGG | + | chr4.4:5332693-5332712 | MS.gene89721:CDS | 40.0% |
| ! | GCTTGTTTCTTCAAAGTAGC+AGG | - | chr4.4:5333031-5333050 | None:intergenic | 40.0% |
| !! | ATGTTGCATTTGTTTCTGGC+TGG | + | chr4.4:5333332-5333351 | MS.gene89721:intron | 40.0% |
| AAGAAACAAGCTAAGCCACC+TGG | + | chr4.4:5333040-5333059 | MS.gene89721:CDS | 45.0% | |
| AATGAGGGTCTGTAATCAGC+AGG | - | chr4.4:5333287-5333306 | None:intergenic | 45.0% | |
| AATTACGTGTGTCCTGGTGT+TGG | + | chr4.4:5333640-5333659 | MS.gene89721:intron | 45.0% | |
| ACAGTGGGACTACCCAAAAT+AGG | - | chr4.4:5334223-5334242 | None:intergenic | 45.0% | |
| CAATGCTAACTGGAACGGAA+CGG | - | chr4.4:5333510-5333529 | None:intergenic | 45.0% | |
| GCTGATTACAGACCCTCATT+TGG | + | chr4.4:5333287-5333306 | MS.gene89721:CDS | 45.0% | |
| GGTACTTGCAGATCTCTTTG+CGG | - | chr4.4:5332686-5332705 | None:intergenic | 45.0% | |
| GGTGAATTTGGAGGAGACAA+GGG | + | chr4.4:5333254-5333273 | MS.gene89721:CDS | 45.0% | |
| GTAGCAGGAACAATCTCAGA+AGG | - | chr4.4:5333016-5333035 | None:intergenic | 45.0% | |
| TAAGCATCTGAGCTAGTTGG+AGG | - | chr4.4:5334349-5334368 | None:intergenic | 45.0% | |
| TGGTGAATTTGGAGGAGACA+AGG | + | chr4.4:5333253-5333272 | MS.gene89721:CDS | 45.0% | |
| TTTGAAGGGGAGAGGAGATT+TGG | + | chr4.4:5333197-5333216 | MS.gene89721:CDS | 45.0% | |
| CGTTCCGTTCCAGTTAGCAT+TGG | + | chr4.4:5333508-5333527 | MS.gene89721:intron | 50.0% | |
| CTCCTCTCCCCTTCAAATCT+GGG | - | chr4.4:5333194-5333213 | None:intergenic | 50.0% | |
| GAATTTGGAGGAGACAAGGG+AGG | + | chr4.4:5333257-5333276 | MS.gene89721:CDS | 50.0% | |
| GGGTGTATGCTATGCCAAGA+AGG | + | chr4.4:5332820-5332839 | MS.gene89721:CDS | 50.0% | |
| TCTCCTCCAAATTCACCACG+AGG | - | chr4.4:5333251-5333270 | None:intergenic | 50.0% | |
| TCTCCTCTCCCCTTCAAATC+TGG | - | chr4.4:5333195-5333214 | None:intergenic | 50.0% | |
| TGACACTACATGCCAACACC+AGG | - | chr4.4:5333655-5333674 | None:intergenic | 50.0% | |
| ! | AAGCCACCTGGTAGACCTTT+TGG | + | chr4.4:5333052-5333071 | MS.gene89721:CDS | 50.0% |
| ! | CTGAGCTGTCTTGTTGTGCA+GGG | + | chr4.4:5334274-5334293 | MS.gene89721:intron | 50.0% |
| ! | GTCGTGGATCTGGTGGTTTT+GGG | + | chr4.4:5334320-5334339 | MS.gene89721:CDS | 50.0% |
| ! | TCTGAGCTGTCTTGTTGTGC+AGG | + | chr4.4:5334273-5334292 | MS.gene89721:intron | 50.0% |
| !! | AGACCTTTTGGTGGTCCACA+GGG | + | chr4.4:5333064-5333083 | MS.gene89721:CDS | 50.0% |
| !! | AGATTTGGTGGTGACCGTGA+TGG | + | chr4.4:5333212-5333231 | MS.gene89721:CDS | 50.0% |
| !! | GATTTGGTGGTGACCGTGAT+GGG | + | chr4.4:5333213-5333232 | MS.gene89721:CDS | 50.0% |
| !! | TAGACCTTTTGGTGGTCCAC+AGG | + | chr4.4:5333063-5333082 | MS.gene89721:CDS | 50.0% |
| !! | TCGTGGATCTGGTGGTTTTG+GGG | + | chr4.4:5334321-5334340 | MS.gene89721:CDS | 50.0% |
| AGGGGTCCACCCAGATTTGA+AGG | + | chr4.4:5333182-5333201 | MS.gene89721:intron | 55.0% | |
| ATTCACCACGAGGACCTCCA+CGG | - | chr4.4:5333241-5333260 | None:intergenic | 55.0% | |
| CACCCAGATTTGAAGGGGAG+AGG | + | chr4.4:5333189-5333208 | MS.gene89721:CDS | 55.0% | |
| CCACCAAAAGGTCTACCAGG+TGG | - | chr4.4:5333058-5333077 | None:intergenic | 55.0% | |
| CCAGATCCACGACCAAATCC+AGG | - | chr4.4:5334313-5334332 | None:intergenic | 55.0% | |
| CTCTCCCCTTCAAATCTGGG+TGG | - | chr4.4:5333191-5333210 | None:intergenic | 55.0% | |
| GAAGGGGAGAGGAGATTTGG+TGG | + | chr4.4:5333200-5333219 | MS.gene89721:CDS | 55.0% | |
| GGACCACCAAAAGGTCTACC+AGG | - | chr4.4:5333061-5333080 | None:intergenic | 55.0% | |
| GGAGGTCCTCGTGGTGAATT+TGG | + | chr4.4:5333242-5333261 | MS.gene89721:CDS | 55.0% | |
| GGGGTCCACCCAGATTTGAA+GGG | + | chr4.4:5333183-5333202 | MS.gene89721:intron | 55.0% | |
| GGGTCCACCCAGATTTGAAG+GGG | + | chr4.4:5333184-5333203 | MS.gene89721:CDS | 55.0% | |
| GGTCCTCGTGGTGAATTTGG+AGG | + | chr4.4:5333245-5333264 | MS.gene89721:CDS | 55.0% | |
| TACCTAGGACGATCACCCTG+TGG | - | chr4.4:5333082-5333101 | None:intergenic | 55.0% | |
| TCACCCTGTGGACCACCAAA+AGG | - | chr4.4:5333070-5333089 | None:intergenic | 55.0% | |
| ! | CCACCTGGTAGACCTTTTGG+TGG | + | chr4.4:5333055-5333074 | MS.gene89721:CDS | 55.0% |
| ! | CCTGGATTTGGTCGTGGATC+TGG | + | chr4.4:5334310-5334329 | MS.gene89721:CDS | 55.0% |
| ! | GGATTTGGTCGTGGATCTGG+TGG | + | chr4.4:5334313-5334332 | MS.gene89721:CDS | 55.0% |
| ! | GGTCGTGGATCTGGTGGTTT+TGG | + | chr4.4:5334319-5334338 | MS.gene89721:CDS | 55.0% |
| ! | TGTCTTGTTGTGCAGGGTCC+TGG | + | chr4.4:5334280-5334299 | MS.gene89721:intron | 55.0% |
| CCAAATCCAGGCCTTCCACC+AGG | - | chr4.4:5334301-5334320 | None:intergenic | 60.0% | |
| CCTGGTGGAAGGCCTGGATT+TGG | + | chr4.4:5334298-5334317 | MS.gene89721:CDS | 60.0% | |
| GACCTCCACGGTACCCATCA+CGG | - | chr4.4:5333229-5333248 | None:intergenic | 60.0% | |
| GTCCACAGGGTGATCGTCCT+AGG | + | chr4.4:5333077-5333096 | MS.gene89721:CDS | 60.0% | |
| TTGTGCAGGGTCCTGGTGGA+AGG | + | chr4.4:5334287-5334306 | MS.gene89721:intron | 60.0% | |
| ! | CTTGTTGTGCAGGGTCCTGG+TGG | + | chr4.4:5334283-5334302 | MS.gene89721:intron | 60.0% |
| ! | GGAAGGCCTGGATTTGGTCG+TGG | + | chr4.4:5334304-5334323 | MS.gene89721:CDS | 60.0% |
| !! | GACCGTGATGGGTACCGTGG+AGG | + | chr4.4:5333224-5333243 | MS.gene89721:CDS | 65.0% |
| !! | GGTGACCGTGATGGGTACCG+TGG | + | chr4.4:5333221-5333240 | MS.gene89721:CDS | 65.0% |
| CAGGGTCCTGGTGGAAGGCC+TGG | + | chr4.4:5334292-5334311 | MS.gene89721:intron | 70.0% | |
| ! | GGGTACCGTGGAGGTCCTCG+TGG | + | chr4.4:5333233-5333252 | MS.gene89721:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 5332583 | 5334369 | 5332583 | ID=MS.gene89721 |
| chr4.4 | mRNA | 5332583 | 5334369 | 5332583 | ID=MS.gene89721.t1;Parent=MS.gene89721 |
| chr4.4 | exon | 5332583 | 5332585 | 5332583 | ID=MS.gene89721.t1.exon1;Parent=MS.gene89721.t1 |
| chr4.4 | CDS | 5332583 | 5332585 | 5332583 | ID=cds.MS.gene89721.t1;Parent=MS.gene89721.t1 |
| chr4.4 | exon | 5332666 | 5332714 | 5332666 | ID=MS.gene89721.t1.exon2;Parent=MS.gene89721.t1 |
| chr4.4 | CDS | 5332666 | 5332714 | 5332666 | ID=cds.MS.gene89721.t1;Parent=MS.gene89721.t1 |
| chr4.4 | exon | 5332819 | 5333098 | 5332819 | ID=MS.gene89721.t1.exon3;Parent=MS.gene89721.t1 |
| chr4.4 | CDS | 5332819 | 5333098 | 5332819 | ID=cds.MS.gene89721.t1;Parent=MS.gene89721.t1 |
| chr4.4 | exon | 5333184 | 5333310 | 5333184 | ID=MS.gene89721.t1.exon4;Parent=MS.gene89721.t1 |
| chr4.4 | CDS | 5333184 | 5333310 | 5333184 | ID=cds.MS.gene89721.t1;Parent=MS.gene89721.t1 |
| chr4.4 | exon | 5334295 | 5334369 | 5334295 | ID=MS.gene89721.t1.exon5;Parent=MS.gene89721.t1 |
| chr4.4 | CDS | 5334295 | 5334369 | 5334295 | ID=cds.MS.gene89721.t1;Parent=MS.gene89721.t1 |
| Gene Sequence |
| Protein sequence |
