Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene019892.t1 | XP_013451741.1 | 97.9 | 576 | 11 | 1 | 1 | 576 | 1 | 575 | 0.00E+00 | 1104.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene019892.t1 | Q9FLW9 | 79.5 | 581 | 111 | 4 | 1 | 575 | 1 | 579 | 1.7e-259 | 896.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene019892.t1 | A0A072U7N4 | 97.9 | 576 | 11 | 1 | 1 | 576 | 1 | 575 | 0.0e+00 | 1104.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene019892 | MS.gene006868 | PPI |
MS.gene019892 | MS.gene065645 | PPI |
MS.gene019892 | MS.gene059683 | PPI |
MS.gene09667 | MS.gene019892 | PPI |
MS.gene019892 | MS.gene015322 | PPI |
MS.gene019892 | MS.gene82397 | PPI |
MS.gene019892 | MS.gene007617 | PPI |
MS.gene09810 | MS.gene019892 | PPI |
MS.gene019892 | MS.gene006867 | PPI |
MS.gene019892 | MS.gene020572 | PPI |
MS.gene019892 | MS.gene22462 | PPI |
MS.gene007459 | MS.gene019892 | PPI |
MS.gene019892 | MS.gene56458 | PPI |
MS.gene56459 | MS.gene019892 | PPI |
MS.gene21480 | MS.gene019892 | PPI |
MS.gene019892 | MS.gene053108 | PPI |
MS.gene032695 | MS.gene019892 | PPI |
MS.gene019892 | MS.gene065294 | PPI |
MS.gene007327 | MS.gene019892 | PPI |
MS.gene019892 | MS.gene004893 | PPI |
MS.gene062243 | MS.gene019892 | PPI |
MS.gene019892 | MS.gene47368 | PPI |
MS.gene006867 | MS.gene019892 | PPI |
MS.gene019892 | MS.gene20039 | PPI |
MS.gene07416 | MS.gene019892 | PPI |
MS.gene019892 | MS.gene034948 | PPI |
MS.gene82768 | MS.gene019892 | PPI |
MS.gene85589 | MS.gene019892 | PPI |
MS.gene019892 | MS.gene82398 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene019892.t1 | MTR_6g034195 | 97.917 | 576 | 11 | 1 | 1 | 576 | 1 | 575 | 0.0 | 1169 |
MS.gene019892.t1 | MTR_1g099360 | 85.095 | 577 | 79 | 3 | 1 | 575 | 1 | 572 | 0.0 | 1014 |
MS.gene019892.t1 | MTR_5g014140 | 74.364 | 472 | 121 | 0 | 105 | 576 | 76 | 547 | 0.0 | 740 |
MS.gene019892.t1 | MTR_5g014140 | 81.329 | 316 | 59 | 0 | 105 | 420 | 76 | 391 | 0.0 | 540 |
MS.gene019892.t1 | MTR_1g076540 | 45.607 | 478 | 236 | 8 | 106 | 561 | 89 | 564 | 4.97e-126 | 382 |
MS.gene019892.t1 | MTR_1g105965 | 39.579 | 523 | 296 | 9 | 48 | 554 | 35 | 553 | 1.32e-112 | 347 |
MS.gene019892.t1 | MTR_4g083340 | 36.232 | 483 | 263 | 11 | 105 | 551 | 6 | 479 | 5.17e-86 | 276 |
MS.gene019892.t1 | MTR_6g004020 | 36.175 | 481 | 262 | 12 | 107 | 551 | 21 | 492 | 1.09e-84 | 273 |
MS.gene019892.t1 | MTR_7g100760 | 36.082 | 485 | 261 | 12 | 105 | 551 | 9 | 482 | 2.48e-84 | 271 |
MS.gene019892.t1 | MTR_1g105965 | 41.713 | 362 | 197 | 6 | 48 | 399 | 35 | 392 | 1.16e-79 | 256 |
MS.gene019892.t1 | MTR_4g083330 | 34.362 | 486 | 249 | 12 | 105 | 555 | 9 | 459 | 8.49e-75 | 246 |
MS.gene019892.t1 | MTR_1g091040 | 28.485 | 495 | 311 | 15 | 100 | 555 | 21 | 511 | 3.71e-46 | 170 |
MS.gene019892.t1 | MTR_7g103420 | 26.939 | 490 | 317 | 13 | 104 | 555 | 26 | 512 | 2.32e-44 | 165 |
MS.gene019892.t1 | MTR_7g103420 | 28.851 | 409 | 272 | 10 | 104 | 495 | 26 | 432 | 2.36e-43 | 163 |
MS.gene019892.t1 | MTR_1g105965 | 36.900 | 271 | 158 | 5 | 48 | 309 | 35 | 301 | 3.19e-43 | 157 |
MS.gene019892.t1 | MTR_1g061630 | 26.253 | 499 | 311 | 14 | 104 | 555 | 26 | 514 | 2.71e-42 | 159 |
MS.gene019892.t1 | MTR_1g061630 | 26.358 | 497 | 297 | 14 | 104 | 555 | 26 | 498 | 5.38e-42 | 158 |
MS.gene019892.t1 | MTR_7g103420 | 25.647 | 425 | 276 | 12 | 169 | 555 | 1 | 423 | 6.29e-32 | 128 |
MS.gene019892.t1 | MTR_1g091040 | 27.577 | 359 | 229 | 10 | 225 | 555 | 23 | 378 | 2.25e-29 | 120 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene019892.t1 | AT5G52920 | 79.346 | 581 | 112 | 4 | 1 | 575 | 1 | 579 | 0.0 | 942 |
MS.gene019892.t1 | AT1G32440 | 71.321 | 530 | 146 | 4 | 51 | 576 | 41 | 568 | 0.0 | 762 |
MS.gene019892.t1 | AT3G22960 | 46.458 | 480 | 227 | 9 | 106 | 561 | 117 | 590 | 3.84e-127 | 385 |
MS.gene019892.t1 | AT3G25960 | 37.397 | 484 | 270 | 11 | 90 | 551 | 7 | 479 | 3.71e-91 | 290 |
MS.gene019892.t1 | AT3G04050 | 36.122 | 490 | 274 | 11 | 97 | 551 | 7 | 492 | 4.15e-90 | 287 |
MS.gene019892.t1 | AT3G55650 | 36.162 | 495 | 274 | 10 | 90 | 551 | 7 | 492 | 1.43e-89 | 286 |
MS.gene019892.t1 | AT5G56350 | 35.887 | 496 | 270 | 13 | 107 | 564 | 9 | 494 | 3.88e-86 | 276 |
MS.gene019892.t1 | AT4G26390 | 35.861 | 488 | 267 | 12 | 107 | 557 | 8 | 486 | 1.52e-85 | 275 |
MS.gene019892.t1 | AT5G63680 | 37.553 | 474 | 265 | 11 | 107 | 551 | 21 | 492 | 4.28e-84 | 271 |
MS.gene019892.t1 | AT5G63680 | 37.553 | 474 | 265 | 11 | 107 | 551 | 21 | 492 | 4.28e-84 | 271 |
MS.gene019892.t1 | AT5G63680 | 37.553 | 474 | 265 | 11 | 107 | 551 | 21 | 492 | 4.28e-84 | 271 |
MS.gene019892.t1 | AT5G08570 | 37.263 | 475 | 265 | 12 | 107 | 551 | 21 | 492 | 1.07e-82 | 268 |
MS.gene019892.t1 | AT5G08570 | 37.263 | 475 | 265 | 12 | 107 | 551 | 21 | 492 | 1.07e-82 | 268 |
MS.gene019892.t1 | AT5G08570 | 37.263 | 475 | 265 | 12 | 107 | 551 | 21 | 492 | 1.07e-82 | 268 |
MS.gene019892.t1 | AT3G55810 | 33.939 | 495 | 267 | 12 | 90 | 551 | 7 | 474 | 2.70e-74 | 245 |
MS.gene019892.t1 | AT2G36580 | 28.056 | 499 | 300 | 15 | 104 | 555 | 26 | 512 | 4.41e-46 | 170 |
MS.gene019892.t1 | AT3G52990 | 28.144 | 501 | 297 | 16 | 104 | 555 | 26 | 512 | 4.00e-44 | 165 |
MS.gene019892.t1 | AT3G52990 | 27.897 | 466 | 287 | 15 | 132 | 555 | 1 | 459 | 2.63e-38 | 147 |
MS.gene019892.t1 | AT3G49160 | 29.694 | 229 | 143 | 6 | 215 | 432 | 473 | 694 | 1.76e-18 | 89.7 |
MS.gene019892.t1 | AT3G49160 | 29.694 | 229 | 143 | 6 | 215 | 432 | 385 | 606 | 1.90e-18 | 89.4 |
Find 128 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCAAAAGTGTTCCAACTAAA+AGG | 0.187883 | 6.1:+14266976 | MS.gene019892:CDS |
GACTGGGATGATATCAAATT+TGG | 0.267078 | 6.1:+14276402 | MS.gene019892:CDS |
CTTCACTCGAACCGGTTTCA+TGG | 0.295648 | 6.1:+14278547 | MS.gene019892:CDS |
AGAATATAATGCACAATCTA+AGG | 0.318497 | 6.1:+14268327 | MS.gene019892:CDS |
GGTCAAATGCCGCCTAATAT+TGG | 0.363184 | 6.1:+14278329 | MS.gene019892:CDS |
AAAAGAGGAACCTCTTCAAT+AGG | 0.363828 | 6.1:-14276936 | None:intergenic |
TTGAGCCACTATCGTCCTTC+TGG | 0.370842 | 6.1:+14278578 | MS.gene019892:CDS |
TGCAATTATGCTTGACACTA+AGG | 0.373767 | 6.1:+14268360 | MS.gene019892:CDS |
GCAACATTGCCTTCAATAAC+TGG | 0.374098 | 6.1:+14276292 | MS.gene019892:CDS |
GAATCATCTTCAGGTGAAAC+AGG | 0.375301 | 6.1:-14267072 | None:intergenic |
CAAACCTTTGAATCATCTTC+AGG | 0.375740 | 6.1:-14267081 | None:intergenic |
TTGAACACTTGACCAATATT+AGG | 0.376811 | 6.1:-14278341 | None:intergenic |
TTGAAGTGGTGAGTGTGGTT+TGG | 0.380733 | 6.1:-14266903 | None:intergenic |
CCGATACTAAGGAAATGATT+TGG | 0.384522 | 6.1:+14268215 | MS.gene019892:CDS |
CTATGCTGTTTCCTTCGTTA+AGG | 0.393069 | 6.1:+14276446 | MS.gene019892:CDS |
AGGAGACATTTGAACGTTAG+AGG | 0.397461 | 6.1:+14276262 | MS.gene019892:CDS |
ACAAAGATAGTATGTACTAT+TGG | 0.400940 | 6.1:+14268184 | MS.gene019892:CDS |
TAAGGAAATGATTTGGAAGT+TGG | 0.401233 | 6.1:+14268222 | MS.gene019892:CDS |
TGCCCAGCTGTCAAATTGAT+TGG | 0.411727 | 6.1:-14270409 | None:intergenic |
GTGATGATTGAATGCAAGTT+TGG | 0.422195 | 6.1:-14276661 | None:intergenic |
ACTGTTGTCTTCACTCGAAC+CGG | 0.424286 | 6.1:+14278539 | MS.gene019892:CDS |
GTGAAATGTGAAGTTGTTGA+TGG | 0.430204 | 6.1:+14276223 | MS.gene019892:CDS |
ACCTCTGCTCTAGTTGGAGT+TGG | 0.436444 | 6.1:-14277310 | None:intergenic |
GGGGATATGATTCTTGTTGA+TGG | 0.436970 | 6.1:+14270520 | MS.gene019892:CDS |
GGTGATGCTTCAAATGGAAA+TGG | 0.437604 | 6.1:+14268130 | MS.gene019892:CDS |
TTACAAGGGGTGCTGCCATT+TGG | 0.440427 | 6.1:+14268109 | MS.gene019892:CDS |
CATTTGACCGCCTGGTATAG+TGG | 0.444641 | 6.1:-14278315 | None:intergenic |
AAGCAAGGAATGGTGAAGAT+AGG | 0.445728 | 6.1:+14280026 | MS.gene019892:CDS |
GATTTGTTGCAGAGAAGGAC+TGG | 0.453572 | 6.1:+14276385 | MS.gene019892:intron |
TTTATTGAACTTTCCTGACT+TGG | 0.454732 | 6.1:-14280115 | None:intergenic |
AGAAACATTTAGAAGAGCCT+TGG | 0.456798 | 6.1:+14279157 | MS.gene019892:CDS |
CCATTTGGTGATGCTTCAAA+TGG | 0.458175 | 6.1:+14268124 | MS.gene019892:CDS |
ATGGTTGCCAGAGGAGATCT+TGG | 0.459130 | 6.1:+14276903 | MS.gene019892:CDS |
GAAACAGGAACAACTTCAAC+AGG | 0.459137 | 6.1:-14267057 | None:intergenic |
TCCAAGAGTGTTAGACATCA+TGG | 0.461328 | 6.1:-14278510 | None:intergenic |
ATTTCCTTAGTATCGGTAGA+TGG | 0.464337 | 6.1:-14268208 | None:intergenic |
ACCATCTTTACCTGTAAAAG+AGG | 0.467255 | 6.1:-14276951 | None:intergenic |
TTTACTATTCAGAGAGGTGT+TGG | 0.468309 | 6.1:+14270442 | MS.gene019892:CDS |
CCTCTGCTCTAGTTGGAGTT+GGG | 0.471340 | 6.1:-14277309 | None:intergenic |
ACCATGATGTCTAACACTCT+TGG | 0.471654 | 6.1:+14278509 | MS.gene019892:CDS |
GAGCAATTGCAACGTTTACA+AGG | 0.472467 | 6.1:+14268094 | MS.gene019892:CDS |
GAACTCTGACCAGTTATTGA+AGG | 0.473439 | 6.1:-14276301 | None:intergenic |
CAACCAATCAATTTGACAGC+TGG | 0.473718 | 6.1:+14270406 | MS.gene019892:CDS |
ATCAATTTGTGCCGTAGCAT+GGG | 0.475247 | 6.1:+14277238 | MS.gene019892:CDS |
CAAAGACTGGCTTTGTATCA+AGG | 0.477982 | 6.1:+14279095 | MS.gene019892:CDS |
TCGCTGAATTCCATGTATAC+AGG | 0.479026 | 6.1:-14279125 | None:intergenic |
CTTTCCATGAGCGGTTTCTC+CGG | 0.482467 | 6.1:-14277383 | None:intergenic |
AGTGGTGAGTGTGGTTTGGA+TGG | 0.484448 | 6.1:-14266899 | None:intergenic |
CTCAGCACCAAGATCTCCTC+TGG | 0.484513 | 6.1:-14276910 | None:intergenic |
TCAATCATCACTGCATCTGA+TGG | 0.485246 | 6.1:+14276673 | MS.gene019892:CDS |
AAAGAGGAACCTCTTCAATA+GGG | 0.485331 | 6.1:-14276935 | None:intergenic |
CAAAAGTGTTCCAACTAAAA+GGG | 0.486282 | 6.1:+14266977 | MS.gene019892:CDS |
AGGGAACAAGTGTTGTAGAT+TGG | 0.487374 | 6.1:+14266996 | MS.gene019892:CDS |
TAATATTGGTCAAGTGTTCA+AGG | 0.490601 | 6.1:+14278343 | MS.gene019892:CDS |
CCATTTGAAGCATCACCAAA+TGG | 0.492478 | 6.1:-14268124 | None:intergenic |
AATCAATTTGTGCCGTAGCA+TGG | 0.496261 | 6.1:+14277237 | MS.gene019892:CDS |
TCTGATACCTCTGCTCTAGT+TGG | 0.498333 | 6.1:-14277316 | None:intergenic |
CCAAATCATTTCCTTAGTAT+CGG | 0.499569 | 6.1:-14268215 | None:intergenic |
AGTGGATTGGAACCTCCATA+TGG | 0.500813 | 6.1:-14280084 | None:intergenic |
CTTGGATATTGTGAGTGGAT+TGG | 0.502010 | 6.1:-14280097 | None:intergenic |
CTTCAGTTCATGAACAACTT+CGG | 0.503508 | 6.1:-14276472 | None:intergenic |
TGGACCATCTACCGATACTA+AGG | 0.505817 | 6.1:+14268204 | MS.gene019892:CDS |
CCACTCACAATATCCAAGTC+AGG | 0.506888 | 6.1:+14280102 | MS.gene019892:CDS |
TTGTCAATGATGTAGCAGTC+GGG | 0.511448 | 6.1:+14270500 | MS.gene019892:CDS |
AAAGTGGTAGGCAACCCATA+TGG | 0.516970 | 6.1:+14280069 | MS.gene019892:CDS |
CAATCATCACTGCATCTGAT+GGG | 0.519077 | 6.1:+14276674 | MS.gene019892:CDS |
CAATAAGACAGCCATGAAAC+CGG | 0.519200 | 6.1:-14278558 | None:intergenic |
AACCAATCAATTTGACAGCT+GGG | 0.519896 | 6.1:+14270407 | MS.gene019892:CDS |
TCATCAGAAAGTTATTGACT+TGG | 0.522369 | 6.1:+14268300 | MS.gene019892:CDS |
TTAGGCGGCATTTGACCGCC+TGG | 0.525161 | 6.1:-14278323 | None:intergenic |
AGGAGTTACTCCTGTATACA+TGG | 0.529828 | 6.1:+14279115 | MS.gene019892:CDS |
TGATGCACACAGTAGCGTTA+CGG | 0.532772 | 6.1:+14278285 | MS.gene019892:CDS |
TTGTGCCAGAAGGACGATAG+TGG | 0.536441 | 6.1:-14278583 | None:intergenic |
GATTGTTGCAACAAATATGC+TGG | 0.536969 | 6.1:+14277270 | MS.gene019892:CDS |
ATTTGGAAGTTGGCTGAGGC+TGG | 0.537305 | 6.1:+14268232 | MS.gene019892:CDS |
CCTGACTTGGATATTGTGAG+TGG | 0.537961 | 6.1:-14280102 | None:intergenic |
TTCACCTGAAGATGATTCAA+AGG | 0.541908 | 6.1:+14267077 | MS.gene019892:CDS |
CGGACAGAAGCCACTATACC+AGG | 0.544854 | 6.1:+14278305 | MS.gene019892:CDS |
TGCTGAGCTCCCTATTGAAG+AGG | 0.547379 | 6.1:+14276926 | MS.gene019892:CDS |
TTTGTCAATGATGTAGCAGT+CGG | 0.549048 | 6.1:+14270499 | MS.gene019892:CDS |
AGATGTTGAAGTGGTGAGTG+TGG | 0.549560 | 6.1:-14266908 | None:intergenic |
CATATTTGTTGCAACAATCA+CGG | 0.554888 | 6.1:-14277266 | None:intergenic |
CTGTCCGGAGAAACCGCTCA+TGG | 0.561397 | 6.1:+14277379 | MS.gene019892:CDS |
TCTGATGGAATAATGCTGTC+CGG | 0.563114 | 6.1:+14277364 | MS.gene019892:CDS |
GAAGAGAGTACAACAAAGAC+TGG | 0.564047 | 6.1:+14279082 | MS.gene019892:CDS |
GCTGTTCGAGAAGGTTCTGA+TGG | 0.565731 | 6.1:+14277349 | MS.gene019892:CDS |
AGGCGGTATGATGTCTATGT+TGG | 0.566323 | 6.1:+14276177 | MS.gene019892:intron |
ATAGCTATTGCTGTTCGAGA+AGG | 0.568994 | 6.1:+14277340 | MS.gene019892:CDS |
AAATCCCCACTTCTAACCTC+AGG | 0.574845 | 6.1:-14270379 | None:intergenic |
GAAGCTCTTCTATCAGTGCA+AGG | 0.575124 | 6.1:+14267025 | MS.gene019892:CDS |
TAGGGTCCTGAGGTTAGAAG+TGG | 0.577348 | 6.1:+14270373 | MS.gene019892:intron |
GCTCGTCTCAATATGTCTCA+TGG | 0.585204 | 6.1:+14268265 | MS.gene019892:CDS |
TTTGTCTTACGCTTAAACGT+CGG | 0.591655 | 6.1:-14268166 | None:intergenic |
TCACGGCCTTTCCCATGCTA+CGG | 0.593595 | 6.1:-14277249 | None:intergenic |
AGTTACCTGTAGAAAATCCA+AGG | 0.594379 | 6.1:-14279174 | None:intergenic |
ATTTGTTGCAGAGAAGGACT+GGG | 0.594927 | 6.1:+14276386 | MS.gene019892:intron |
TGTTAGACATCATGGTTGCA+TGG | 0.595924 | 6.1:-14278502 | None:intergenic |
GTGGATTGGAACCTCCATAT+GGG | 0.596108 | 6.1:-14280083 | None:intergenic |
GAAGTTGCACTTGTACAAAG+TGG | 0.596281 | 6.1:+14280053 | MS.gene019892:CDS |
GCTGTCAAATTGATTGGTTG+TGG | 0.603728 | 6.1:-14270403 | None:intergenic |
GGGTCCTGAGGTTAGAAGTG+GGG | 0.606979 | 6.1:+14270375 | MS.gene019892:intron |
TTGCACTTGTACAAAGTGGT+AGG | 0.607359 | 6.1:+14280057 | MS.gene019892:CDS |
AGCAATTGCAACGTTTACAA+GGG | 0.607735 | 6.1:+14268095 | MS.gene019892:CDS |
AGGGTCCTGAGGTTAGAAGT+GGG | 0.608163 | 6.1:+14270374 | MS.gene019892:intron |
TTCATGTGTAGATGTTGAAG+TGG | 0.609974 | 6.1:-14266917 | None:intergenic |
GGATGATATCAAATTTGGAG+TGG | 0.610417 | 6.1:+14276407 | MS.gene019892:CDS |
GTTTAGGCTATGGTTGCCAG+AGG | 0.611936 | 6.1:+14276894 | MS.gene019892:intron |
TGTCAATGATGTAGCAGTCG+GGG | 0.612421 | 6.1:+14270501 | MS.gene019892:CDS |
AACACTTGACCAATATTAGG+CGG | 0.612576 | 6.1:-14278338 | None:intergenic |
TTTGTGCCGTAGCATGGGAA+AGG | 0.615727 | 6.1:+14277243 | MS.gene019892:CDS |
TATGTTGGTTAAGTCTAAGA+CGG | 0.615838 | 6.1:+14276192 | MS.gene019892:CDS |
ATGGAGGAGAGCTTAAGTCA+AGG | 0.616306 | 6.1:+14276242 | MS.gene019892:CDS |
AAATGTGAAGTTGTTGATGG+AGG | 0.617326 | 6.1:+14276226 | MS.gene019892:CDS |
ATTTACTTACTTTCCATGAG+CGG | 0.619106 | 6.1:-14277392 | None:intergenic |
GATGATCATATGCAGAAGCA+AGG | 0.622028 | 6.1:+14280011 | MS.gene019892:intron |
AATGATTTGGAAGTTGGCTG+AGG | 0.623922 | 6.1:+14268228 | MS.gene019892:CDS |
AAAGCAAATATTGTGCCAGA+AGG | 0.626417 | 6.1:-14278593 | None:intergenic |
AATCATCACTGCATCTGATG+GGG | 0.635338 | 6.1:+14276675 | MS.gene019892:CDS |
GCAATTGCAACGTTTACAAG+GGG | 0.639388 | 6.1:+14268096 | MS.gene019892:CDS |
CATTGTGAAAATTGAAAGTG+CGG | 0.641051 | 6.1:+14276630 | MS.gene019892:CDS |
CCCAACTCCAACTAGAGCAG+AGG | 0.641516 | 6.1:+14277309 | MS.gene019892:CDS |
TCATATGCAGAAGCAAGGAA+TGG | 0.652939 | 6.1:+14280016 | MS.gene019892:intron |
CTTCAAATGGAAATGGAATG+TGG | 0.654911 | 6.1:+14268137 | MS.gene019892:CDS |
GTGGTAGGCAACCCATATGG+AGG | 0.656472 | 6.1:+14280072 | MS.gene019892:CDS |
AACTTCGGCATCCTTAACGA+AGG | 0.672322 | 6.1:-14276457 | None:intergenic |
TCGAGTGAAGACAACAGTAG+AGG | 0.673798 | 6.1:-14278534 | None:intergenic |
CTACACATGAAAGAGTTCAG+AGG | 0.696485 | 6.1:+14266929 | MS.gene019892:CDS |
ACAGAAGCCACTATACCAGG+CGG | 0.768241 | 6.1:+14278308 | MS.gene019892:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.1 | gene | 14266874 | 14280136 | 14266874 | ID=MS.gene019892 |
chr6.1 | mRNA | 14266874 | 14280136 | 14266874 | ID=MS.gene019892.t1;Parent=MS.gene019892 |
chr6.1 | exon | 14266874 | 14267098 | 14266874 | ID=MS.gene019892.t1.exon1;Parent=MS.gene019892.t1 |
chr6.1 | CDS | 14266874 | 14267098 | 14266874 | ID=cds.MS.gene019892.t1;Parent=MS.gene019892.t1 |
chr6.1 | exon | 14268088 | 14268381 | 14268088 | ID=MS.gene019892.t1.exon2;Parent=MS.gene019892.t1 |
chr6.1 | CDS | 14268088 | 14268381 | 14268088 | ID=cds.MS.gene019892.t1;Parent=MS.gene019892.t1 |
chr6.1 | exon | 14270376 | 14270541 | 14270376 | ID=MS.gene019892.t1.exon3;Parent=MS.gene019892.t1 |
chr6.1 | CDS | 14270376 | 14270541 | 14270376 | ID=cds.MS.gene019892.t1;Parent=MS.gene019892.t1 |
chr6.1 | exon | 14276179 | 14276313 | 14276179 | ID=MS.gene019892.t1.exon4;Parent=MS.gene019892.t1 |
chr6.1 | CDS | 14276179 | 14276313 | 14276179 | ID=cds.MS.gene019892.t1;Parent=MS.gene019892.t1 |
chr6.1 | exon | 14276397 | 14276507 | 14276397 | ID=MS.gene019892.t1.exon5;Parent=MS.gene019892.t1 |
chr6.1 | CDS | 14276397 | 14276507 | 14276397 | ID=cds.MS.gene019892.t1;Parent=MS.gene019892.t1 |
chr6.1 | exon | 14276608 | 14276696 | 14276608 | ID=MS.gene019892.t1.exon6;Parent=MS.gene019892.t1 |
chr6.1 | CDS | 14276608 | 14276696 | 14276608 | ID=cds.MS.gene019892.t1;Parent=MS.gene019892.t1 |
chr6.1 | exon | 14276900 | 14276962 | 14276900 | ID=MS.gene019892.t1.exon7;Parent=MS.gene019892.t1 |
chr6.1 | CDS | 14276900 | 14276962 | 14276900 | ID=cds.MS.gene019892.t1;Parent=MS.gene019892.t1 |
chr6.1 | exon | 14277229 | 14277404 | 14277229 | ID=MS.gene019892.t1.exon8;Parent=MS.gene019892.t1 |
chr6.1 | CDS | 14277229 | 14277404 | 14277229 | ID=cds.MS.gene019892.t1;Parent=MS.gene019892.t1 |
chr6.1 | exon | 14278262 | 14278364 | 14278262 | ID=MS.gene019892.t1.exon9;Parent=MS.gene019892.t1 |
chr6.1 | CDS | 14278262 | 14278364 | 14278262 | ID=cds.MS.gene019892.t1;Parent=MS.gene019892.t1 |
chr6.1 | exon | 14278476 | 14278624 | 14278476 | ID=MS.gene019892.t1.exon10;Parent=MS.gene019892.t1 |
chr6.1 | CDS | 14278476 | 14278624 | 14278476 | ID=cds.MS.gene019892.t1;Parent=MS.gene019892.t1 |
chr6.1 | exon | 14279082 | 14279190 | 14279082 | ID=MS.gene019892.t1.exon11;Parent=MS.gene019892.t1 |
chr6.1 | CDS | 14279082 | 14279190 | 14279082 | ID=cds.MS.gene019892.t1;Parent=MS.gene019892.t1 |
chr6.1 | exon | 14280026 | 14280136 | 14280026 | ID=MS.gene019892.t1.exon12;Parent=MS.gene019892.t1 |
chr6.1 | CDS | 14280026 | 14280136 | 14280026 | ID=cds.MS.gene019892.t1;Parent=MS.gene019892.t1 |
Gene Sequence |
Protein sequence |