AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene020883

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene020883.t1 MTR_5g097280 99.623 265 1 0 1 265 1 265 0.0 540
MS.gene020883.t1 MTR_4g094605 82.500 240 38 1 30 265 27 266 6.49e-149 417
MS.gene020883.t1 MTR_6g012080 75.373 268 60 3 1 265 1 265 1.05e-147 414
MS.gene020883.t1 MTR_6g011870 82.500 240 39 2 29 265 26 265 4.16e-147 412
MS.gene020883.t1 MTR_6g011880 82.083 240 40 2 29 265 26 265 6.82e-147 412
MS.gene020883.t1 MTR_6g011890 83.404 235 36 2 34 265 31 265 1.21e-146 411
MS.gene020883.t1 MTR_6g012110 75.281 267 58 3 2 265 4 265 6.43e-145 407
MS.gene020883.t1 MTR_2g081090 70.076 264 66 6 5 265 11 264 3.23e-124 354
MS.gene020883.t1 MTR_2g081090 78.027 223 45 4 46 265 16 237 1.18e-121 347
MS.gene020883.t1 MTR_6g043600 71.489 235 47 1 31 265 15 229 4.14e-119 340
MS.gene020883.t1 MTR_6g060175 54.067 209 87 4 49 253 71 274 3.56e-62 197
MS.gene020883.t1 MTR_1g026550 45.817 251 118 7 17 253 76 322 6.63e-62 198
MS.gene020883.t1 MTR_6g060175 52.153 209 81 5 49 253 71 264 7.32e-56 181
MS.gene020883.t1 MTR_5g098785 42.857 217 89 10 62 253 63 269 5.17e-37 132
MS.gene020883.t1 MTR_5g098780 41.935 217 91 9 62 253 61 267 2.32e-36 130
MS.gene020883.t1 MTR_3g101670 41.146 192 99 4 66 249 68 253 6.64e-36 129
MS.gene020883.t1 MTR_8g023790 37.069 232 107 9 34 249 48 256 8.50e-36 129
MS.gene020883.t1 MTR_6g033320 39.655 232 102 9 27 253 35 233 2.12e-35 127
MS.gene020883.t1 MTR_2g042720 36.444 225 109 9 52 260 60 266 1.30e-31 117
MS.gene020883.t1 MTR_1g026550 39.490 157 90 4 16 168 75 230 2.34e-29 111
MS.gene020883.t1 MTR_3g435460 34.826 201 97 6 66 252 63 243 1.07e-27 107
MS.gene020883.t1 MTR_4g015570 42.593 162 72 7 93 250 134 278 1.74e-25 102
MS.gene020883.t1 MTR_3g435460 33.505 194 95 6 73 252 9 182 2.42e-24 97.1
MS.gene020883.t1 MTR_3g070340 44.371 151 63 8 93 239 137 270 8.99e-21 89.4
MS.gene020883.t1 MTR_5g098770 54.054 74 33 1 181 253 13 86 4.10e-20 82.8
MS.gene020883.t1 MTR_2g008610 32.850 207 89 7 66 242 73 259 1.57e-17 80.1
MS.gene020883.t1 MTR_2g436960 48.438 64 29 1 189 252 33 92 2.62e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene020883.t1 AT2G05100 86.792 265 35 0 1 265 1 265 2.73e-176 486
MS.gene020883.t1 AT2G05070 86.038 265 37 0 1 265 1 265 2.32e-175 484
MS.gene020883.t1 AT3G27690 85.714 266 37 1 1 265 33 298 1.22e-173 481
MS.gene020883.t1 AT3G27690 85.714 266 37 1 1 265 1 266 2.25e-173 479
MS.gene020883.t1 AT2G05100 86.920 237 31 0 1 237 1 237 7.15e-153 429
MS.gene020883.t1 AT2G34420 75.746 268 55 3 2 265 4 265 5.00e-144 404
MS.gene020883.t1 AT1G29920 76.119 268 56 3 2 265 4 267 5.93e-144 404
MS.gene020883.t1 AT1G29910 76.119 268 56 3 2 265 4 267 5.93e-144 404
MS.gene020883.t1 AT1G29930 75.836 269 55 4 2 265 4 267 9.71e-144 404
MS.gene020883.t1 AT2G34430 76.119 268 55 5 2 265 4 266 7.27e-143 402
MS.gene020883.t1 AT5G54270 67.293 266 75 6 2 264 8 264 2.94e-121 347
MS.gene020883.t1 AT1G76570 44.776 268 129 7 2 256 62 323 2.68e-62 199
MS.gene020883.t1 AT4G10340 52.632 209 90 5 49 253 62 265 1.76e-57 185
MS.gene020883.t1 AT1G45474 41.969 193 97 4 66 249 56 242 5.30e-38 134
MS.gene020883.t1 AT1G45474 41.969 193 97 4 66 249 56 242 5.30e-38 134
MS.gene020883.t1 AT1G61520 40.486 247 107 12 32 253 34 265 6.74e-38 134
MS.gene020883.t1 AT1G61520 40.486 247 107 12 32 253 34 265 6.74e-38 134
MS.gene020883.t1 AT3G54890 43.367 196 91 6 63 253 52 232 9.97e-37 130
MS.gene020883.t1 AT3G61470 39.024 205 109 6 52 249 50 245 3.88e-36 129
MS.gene020883.t1 AT1G61520 42.308 208 85 10 72 254 14 211 1.81e-33 121
MS.gene020883.t1 AT1G19150 34.222 225 114 7 52 260 63 269 1.53e-29 112
MS.gene020883.t1 AT3G47470 38.342 193 101 6 66 252 64 244 2.27e-28 108
MS.gene020883.t1 AT3G08940 34.201 269 107 12 33 250 27 276 3.18e-26 104
MS.gene020883.t1 AT3G54890 41.875 160 74 5 63 218 52 196 3.80e-25 99.8
MS.gene020883.t1 AT5G01530 41.212 165 76 7 93 253 135 282 4.79e-25 101
MS.gene020883.t1 AT2G40100 43.137 153 67 7 93 242 136 271 7.08e-23 95.1
MS.gene020883.t1 AT3G54890 35.233 193 77 5 63 253 52 198 2.01e-22 92.4
MS.gene020883.t1 AT1G15820 30.916 262 123 9 15 242 19 256 5.35e-18 81.3
MS.gene020883.t1 AT5G28450 52.941 68 30 2 184 249 94 161 4.89e-14 68.9
MS.gene020883.t1 AT3G54890 43.182 88 42 2 63 149 52 132 2.18e-11 61.2

Find 107 sgRNAs with CRISPR-Local

Find 114 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGGTTCCTTGCAAAGGTTTC+AGG 0.102826 5.4:-76516139 None:intergenic
AGAGGGTGGCCTTGACTATT+TGG 0.205421 5.4:+76516294 MS.gene020883:CDS
CGGTGAGGCTGTGTGGTTTA+AGG 0.263630 5.4:+76516252 MS.gene020883:CDS
TTTGTTCAAGCCATTGTTAC+TGG 0.264682 5.4:+76516559 MS.gene020883:CDS
CTCAGAGCATTCTTGCAATC+TGG 0.295339 5.4:+76516338 MS.gene020883:CDS
CTCTGAGCATGGATCAGGTT+TGG 0.324151 5.4:-76516322 None:intergenic
GTCTTGGCGTTCTCATTGTC+CGG 0.330962 5.4:-76516665 None:intergenic
GAGGGTGGCCTTGACTATTT+GGG 0.336583 5.4:+76516295 MS.gene020883:CDS
TTGGCTATGTTCTCCATGTT+TGG 0.341425 5.4:+76516532 MS.gene020883:CDS
TTCAACTCTGCGAATGCATC+AGG 0.344835 5.4:-76516484 None:intergenic
GGCCACCCTCTGAGAAGATC+TGG 0.347970 5.4:-76516282 None:intergenic
CCCTGACCGTCCCAAGTACT+TGG 0.361481 5.4:+76516030 MS.gene020883:CDS
GGTGAGTTTCCTGGTGACTA+TGG 0.365981 5.4:+76516088 MS.gene020883:CDS
TGCCAGTGAATGCTGATTGT+TGG 0.367235 5.4:-76515573 None:intergenic
CCGTTCTTCTCAAGGATCTC+AGG 0.374661 5.4:-76516220 None:intergenic
TACTTGACTGGTGAGTTTCC+TGG 0.393901 5.4:+76516079 MS.gene020883:CDS
GCCCATGCGTTGTTGGCGAC+AGG 0.394359 5.4:-76516622 None:intergenic
GGCTACACAGGTTGTGCTCA+TGG 0.400913 5.4:+76516360 MS.gene020883:CDS
CCCAAGTACTTGGGACGGTC+AGG 0.404268 5.4:-76516031 None:intergenic
TCTGAGCATGGATCAGGTTT+GGG 0.410646 5.4:-76516321 None:intergenic
GAGAAGAACGGTGTTAAATT+CGG 0.410939 5.4:+76516232 MS.gene020883:CDS
TCTTGGCGTTCTCATTGTCC+GGG 0.416065 5.4:-76516664 None:intergenic
TGGTCGTAAAGGTTCTGAAC+AGG 0.417502 5.4:-76516589 None:intergenic
TGGGCTATGCTTGGTGCATT+GGG 0.418579 5.4:+76516187 MS.gene020883:CDS
GGTGGTGCCTTTGACCCTCT+TGG 0.419230 5.4:+76516448 MS.gene020883:CDS
AGCATATGCCCATGCGTTGT+TGG 0.419884 5.4:-76516629 None:intergenic
GTGCTCATGGGATTTGTTGA+AGG 0.427865 5.4:+76516373 MS.gene020883:CDS
ATGGGCTATGCTTGGTGCAT+TGG 0.428620 5.4:+76516186 MS.gene020883:CDS
AACAAGGAAATGAGTTCATC+AGG 0.436049 5.4:+76515608 MS.gene020883:CDS
AGAGTGCTCCTGAGAGCATT+TGG 0.436155 5.4:+76515680 MS.gene020883:CDS
ATCAGGAAAGCTGGTAACTT+TGG 0.441484 5.4:+76515625 MS.gene020883:CDS
TGATGCATTCGCAGAGTTGA+AGG 0.448661 5.4:+76516486 MS.gene020883:CDS
AGAGAATGGACCCAAGTACT+TGG 0.454278 5.4:-76516041 None:intergenic
GAATGCTCTGAGCATGGATC+AGG 0.464537 5.4:-76516327 None:intergenic
TCAGCATTCACTGGCAAGAC+TGG 0.471182 5.4:+76515580 MS.gene020883:CDS
TCAGAGCATTCTTGCAATCT+GGG 0.473136 5.4:+76516339 MS.gene020883:CDS
ACCCTGTCGCCAACAACGCA+TGG 0.473833 5.4:+76516620 MS.gene020883:CDS
TTGAAGTAATTCACAGCAGA+TGG 0.482906 5.4:+76516167 MS.gene020883:CDS
AAGGCACCACCAGGGTATAG+TGG 0.492859 5.4:-76516436 None:intergenic
GTTGAAGGCTACAGAGTTGG+TGG 0.494755 5.4:+76516388 MS.gene020883:CDS
CACAGCAGATGGGCTATGCT+TGG 0.495212 5.4:+76516178 MS.gene020883:CDS
AACTCACCAGTCAAGTATGA+TGG 0.498383 5.4:-76516073 None:intergenic
AGTTTCCTGGTGACTATGGA+TGG 0.502040 5.4:+76516092 MS.gene020883:CDS
GATGGAATTTGCTCAGAGAA+TGG 0.503528 5.4:-76516055 None:intergenic
CAAGCCATTGTTACTGGCAA+GGG 0.504441 5.4:+76516565 MS.gene020883:CDS
AAGCTCACGGTTCCTTGCAA+AGG 0.505875 5.4:-76516146 None:intergenic
AATGAGTTCATCAGGAAAGC+TGG 0.507285 5.4:+76515616 MS.gene020883:CDS
ATTTAACACCGTTCTTCTCA+AGG 0.517683 5.4:-76516228 None:intergenic
GCTACACAGGTTGTGCTCAT+GGG 0.523866 5.4:+76516361 MS.gene020883:CDS
GACTATGGATGGGACACAGC+TGG 0.528763 5.4:+76516103 MS.gene020883:CDS
GGTCAGCAACATGGTCGTAA+AGG 0.529520 5.4:-76516600 None:intergenic
CCCATGCGTTGTTGGCGACA+GGG 0.536409 5.4:-76516621 None:intergenic
ACTACTTACCAAATGCTCTC+AGG 0.536679 5.4:-76515688 None:intergenic
CCCTGTCGCCAACAACGCAT+GGG 0.536908 5.4:+76516621 MS.gene020883:CDS
AGCAAGACCAAGAGGGTCAA+AGG 0.536924 5.4:-76516455 None:intergenic
TCAAGCCATTGTTACTGGCA+AGG 0.539300 5.4:+76516564 MS.gene020883:CDS
CAAATTCCATCATACTTGAC+TGG 0.540774 5.4:+76516067 MS.gene020883:CDS
CGTTCTTCTCAAGGATCTCA+GGG 0.541586 5.4:-76516219 None:intergenic
AGAGGGTCAAAGGCACCACC+AGG 0.542069 5.4:-76516445 None:intergenic
GCCCAGATCTTCTCAGAGGG+TGG 0.543898 5.4:+76516280 MS.gene020883:CDS
TTTGTTGAAGGCTACAGAGT+TGG 0.545933 5.4:+76516385 MS.gene020883:CDS
TCTTGCAATCTGGGCTACAC+AGG 0.546344 5.4:+76516348 MS.gene020883:CDS
CCTGACCGTCCCAAGTACTT+GGG 0.552290 5.4:+76516031 MS.gene020883:CDS
ATCCAACAATCAGCATTCAC+TGG 0.556574 5.4:+76515571 MS.gene020883:CDS
AGAGTTGGTGGAGGACCACT+TGG 0.559575 5.4:+76516400 MS.gene020883:CDS
GGAACTCAAGAACGGCCGAT+TGG 0.563130 5.4:+76516513 MS.gene020883:CDS
GAGGCTGTGTGGTTTAAGGC+TGG 0.563162 5.4:+76516256 MS.gene020883:CDS
GGTGCCCAGATCTTCTCAGA+GGG 0.564509 5.4:+76516277 MS.gene020883:CDS
TTGCAAGAATGCTCTGAGCA+TGG 0.570179 5.4:-76516333 None:intergenic
GCCACCCTCTGAGAAGATCT+GGG 0.573456 5.4:-76516281 None:intergenic
GGCAAGACTGGTTTGAAACA+AGG 0.575215 5.4:+76515592 MS.gene020883:CDS
ACATGGAGAACATAGCCAAT+CGG 0.576833 5.4:-76516528 None:intergenic
AGGCACCACCAGGGTATAGT+GGG 0.590141 5.4:-76516435 None:intergenic
CCTGAGATCCTTGAGAAGAA+CGG 0.593147 5.4:+76516220 MS.gene020883:CDS
TGATTGTTGGATTGCAGAGG+TGG 0.593510 5.4:-76515560 None:intergenic
TGGCGACAGGGTCAGCAACA+TGG 0.597357 5.4:-76516609 None:intergenic
AGGGCCCTTGCCAGTAACAA+TGG 0.597695 5.4:-76516569 None:intergenic
CCAAGTACTTGGGACGGTCA+GGG 0.599166 5.4:-76516030 None:intergenic
GAGAATGGACCCAAGTACTT+GGG 0.599574 5.4:-76516040 None:intergenic
TTGGGTTGCCCAAATAGTCA+AGG 0.608462 5.4:-76516303 None:intergenic
TGAAGTAATTCACAGCAGAT+GGG 0.611387 5.4:+76516168 MS.gene020883:CDS
GTGTCCCATCCATAGTCACC+AGG 0.613151 5.4:-76516097 None:intergenic
CTGATCCTGAAACCTTTGCA+AGG 0.615014 5.4:+76516134 MS.gene020883:CDS
TGGTGCCCAGATCTTCTCAG+AGG 0.616548 5.4:+76516276 MS.gene020883:CDS
TATGCTACTAACTTCGTCCC+CGG 0.620877 5.4:+76516646 MS.gene020883:CDS
GGTGGAGGACCACTTGGTGA+AGG 0.624859 5.4:+76516406 MS.gene020883:CDS
GGGTCTAGTCCTTCACCAAG+TGG 0.625944 5.4:-76516415 None:intergenic
TCAACTCTGCGAATGCATCA+GGG 0.627212 5.4:-76516483 None:intergenic
GGGTCATCAGCAAGACCAAG+AGG 0.629020 5.4:-76516463 None:intergenic
GGTCGTAAAGGTTCTGAACA+GGG 0.631913 5.4:-76516588 None:intergenic
ACTCTTCACAGTACGACGCA+TGG 0.636134 5.4:-76515662 None:intergenic
CTTCTCAAGGATCTCAGGGA+AGG 0.637864 5.4:-76516215 None:intergenic
TGCTGATTGTTGGATTGCAG+AGG 0.642666 5.4:-76515563 None:intergenic
ATTCGCAGAGTTGAAGGTCA+AGG 0.644022 5.4:+76516492 MS.gene020883:CDS
AAGGTCAAGGAACTCAAGAA+CGG 0.645041 5.4:+76516505 MS.gene020883:CDS
TGTGAATTACTTCAAGCTCA+CGG 0.646318 5.4:-76516159 None:intergenic
GAAGGCTACAGAGTTGGTGG+AGG 0.651701 5.4:+76516391 MS.gene020883:CDS
CTTGGCGTTCTCATTGTCCG+GGG 0.655135 5.4:-76516663 None:intergenic
TTAAATTCGGTGAGGCTGTG+TGG 0.662485 5.4:+76516245 MS.gene020883:CDS
ATGGACCCAAGTACTTGGGA+CGG 0.662771 5.4:-76516036 None:intergenic
GGACTAGACCCACTATACCC+TGG 0.675418 5.4:+76516427 MS.gene020883:CDS
GGTCATCAGCAAGACCAAGA+GGG 0.676366 5.4:-76516462 None:intergenic
GTTTCCTGGTGACTATGGAT+GGG 0.694385 5.4:+76516093 MS.gene020883:CDS
GAACGGTGTTAAATTCGGTG+AGG 0.717704 5.4:+76516237 MS.gene020883:CDS
GAGGGTCAAAGGCACCACCA+GGG 0.717882 5.4:-76516444 None:intergenic
TTGAACAAAGAAACCAAACA+TGG 0.730913 5.4:-76516545 None:intergenic
CTAGACCCACTATACCCTGG+TGG 0.775578 5.4:+76516430 MS.gene020883:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATCAAATGTTAATAACTAAC+TGG + chr5.4:76515864-76515883 MS.gene020883:intron 20.0%
!!! TTGTTTTCATATATTTGACT+TGG + chr5.4:76515979-76515998 MS.gene020883:intron 20.0%
!! ATGTGCTAATATTTGAAGTA+AGG + chr5.4:76515946-76515965 MS.gene020883:intron 25.0%
TTGAACAAAGAAACCAAACA+TGG - chr5.4:76516548-76516567 None:intergenic 30.0%
!!! ACCTGCATAATTTTAGCTTT+TGG - chr5.4:76515827-76515846 None:intergenic 30.0%
!!! CCTGCATAATTTTAGCTTTT+GGG - chr5.4:76515826-76515845 None:intergenic 30.0%
!!! TATGATCTGTTTTGAAAACC+AGG + chr5.4:76516002-76516021 MS.gene020883:intron 30.0%
AACAAGGAAATGAGTTCATC+AGG + chr5.4:76515608-76515627 MS.gene020883:CDS 35.0%
ATTTAACACCGTTCTTCTCA+AGG - chr5.4:76516231-76516250 None:intergenic 35.0%
CAAATTCCATCATACTTGAC+TGG + chr5.4:76516067-76516086 MS.gene020883:CDS 35.0%
CAAGAGTCATGATGAGATAA+AGG - chr5.4:76515767-76515786 None:intergenic 35.0%
CCCAAAAGCTAAAATTATGC+AGG + chr5.4:76515823-76515842 MS.gene020883:intron 35.0%
TGAAGTAATTCACAGCAGAT+GGG + chr5.4:76516168-76516187 MS.gene020883:CDS 35.0%
TGTGAATTACTTCAAGCTCA+CGG - chr5.4:76516162-76516181 None:intergenic 35.0%
TTGAAGTAATTCACAGCAGA+TGG + chr5.4:76516167-76516186 MS.gene020883:CDS 35.0%
TTTGTTCAAGCCATTGTTAC+TGG + chr5.4:76516559-76516578 MS.gene020883:CDS 35.0%
! GAGAAGAACGGTGTTAAATT+CGG + chr5.4:76516232-76516251 MS.gene020883:CDS 35.0%
!!! TCTGTTTTGAAAACCAGGTA+TGG + chr5.4:76516007-76516026 MS.gene020883:intron 35.0%
AACTCACCAGTCAAGTATGA+TGG - chr5.4:76516076-76516095 None:intergenic 40.0%
AAGGTCAAGGAACTCAAGAA+CGG + chr5.4:76516505-76516524 MS.gene020883:CDS 40.0%
AATGAGTTCATCAGGAAAGC+TGG + chr5.4:76515616-76515635 MS.gene020883:CDS 40.0%
ACATGGAGAACATAGCCAAT+CGG - chr5.4:76516531-76516550 None:intergenic 40.0%
ACTACTTACCAAATGCTCTC+AGG - chr5.4:76515691-76515710 None:intergenic 40.0%
ATCAGGAAAGCTGGTAACTT+TGG + chr5.4:76515625-76515644 MS.gene020883:CDS 40.0%
ATCCAACAATCAGCATTCAC+TGG + chr5.4:76515571-76515590 MS.gene020883:CDS 40.0%
TTGGCTATGTTCTCCATGTT+TGG + chr5.4:76516532-76516551 MS.gene020883:CDS 40.0%
TTTGTTGAAGGCTACAGAGT+TGG + chr5.4:76516385-76516404 MS.gene020883:CDS 40.0%
! GATGGAATTTGCTCAGAGAA+TGG - chr5.4:76516058-76516077 None:intergenic 40.0%
! TCAGAGCATTCTTGCAATCT+GGG + chr5.4:76516339-76516358 MS.gene020883:CDS 40.0%
AGAGAATGGACCCAAGTACT+TGG - chr5.4:76516044-76516063 None:intergenic 45.0%
AGTTTCCTGGTGACTATGGA+TGG + chr5.4:76516092-76516111 MS.gene020883:CDS 45.0%
ATTCGCAGAGTTGAAGGTCA+AGG + chr5.4:76516492-76516511 MS.gene020883:CDS 45.0%
CAAGCCATTGTTACTGGCAA+GGG + chr5.4:76516565-76516584 MS.gene020883:CDS 45.0%
CCTGAGATCCTTGAGAAGAA+CGG + chr5.4:76516220-76516239 MS.gene020883:CDS 45.0%
CGTTCTTCTCAAGGATCTCA+GGG - chr5.4:76516222-76516241 None:intergenic 45.0%
CTGATCCTGAAACCTTTGCA+AGG + chr5.4:76516134-76516153 MS.gene020883:CDS 45.0%
GAGAATGGACCCAAGTACTT+GGG - chr5.4:76516043-76516062 None:intergenic 45.0%
GTTTCCTGGTGACTATGGAT+GGG + chr5.4:76516093-76516112 MS.gene020883:CDS 45.0%
TACTTGACTGGTGAGTTTCC+TGG + chr5.4:76516079-76516098 MS.gene020883:CDS 45.0%
TATGCTACTAACTTCGTCCC+CGG + chr5.4:76516646-76516665 MS.gene020883:CDS 45.0%
TCAACTCTGCGAATGCATCA+GGG - chr5.4:76516486-76516505 None:intergenic 45.0%
TCAAGCCATTGTTACTGGCA+AGG + chr5.4:76516564-76516583 MS.gene020883:CDS 45.0%
TCTGAGCATGGATCAGGTTT+GGG - chr5.4:76516324-76516343 None:intergenic 45.0%
TGATGCATTCGCAGAGTTGA+AGG + chr5.4:76516486-76516505 MS.gene020883:CDS 45.0%
TGATTGTTGGATTGCAGAGG+TGG - chr5.4:76515563-76515582 None:intergenic 45.0%
TTCAACTCTGCGAATGCATC+AGG - chr5.4:76516487-76516506 None:intergenic 45.0%
! CTCAGAGCATTCTTGCAATC+TGG + chr5.4:76516338-76516357 MS.gene020883:CDS 45.0%
! GAACGGTGTTAAATTCGGTG+AGG + chr5.4:76516237-76516256 MS.gene020883:CDS 45.0%
! TGCCAGTGAATGCTGATTGT+TGG - chr5.4:76515576-76515595 None:intergenic 45.0%
! TGCTGATTGTTGGATTGCAG+AGG - chr5.4:76515566-76515585 None:intergenic 45.0%
! TTAAATTCGGTGAGGCTGTG+TGG + chr5.4:76516245-76516264 MS.gene020883:CDS 45.0%
! TTGCAAGAATGCTCTGAGCA+TGG - chr5.4:76516336-76516355 None:intergenic 45.0%
! TTGGGTTGCCCAAATAGTCA+AGG - chr5.4:76516306-76516325 None:intergenic 45.0%
!! GGCAAGACTGGTTTGAAACA+AGG + chr5.4:76515592-76515611 MS.gene020883:CDS 45.0%
!! GGTCGTAAAGGTTCTGAACA+GGG - chr5.4:76516591-76516610 None:intergenic 45.0%
!! GTGCTCATGGGATTTGTTGA+AGG + chr5.4:76516373-76516392 MS.gene020883:CDS 45.0%
!! TGGTCGTAAAGGTTCTGAAC+AGG - chr5.4:76516592-76516611 None:intergenic 45.0%
AAGCTCACGGTTCCTTGCAA+AGG - chr5.4:76516149-76516168 None:intergenic 50.0%
ACTCTTCACAGTACGACGCA+TGG - chr5.4:76515665-76515684 None:intergenic 50.0%
AGCAAGACCAAGAGGGTCAA+AGG - chr5.4:76516458-76516477 None:intergenic 50.0%
AGCATATGCCCATGCGTTGT+TGG - chr5.4:76516632-76516651 None:intergenic 50.0%
ATGGACCCAAGTACTTGGGA+CGG - chr5.4:76516039-76516058 None:intergenic 50.0%
CCGTTCTTCTCAAGGATCTC+AGG - chr5.4:76516223-76516242 None:intergenic 50.0%
CGGTTCCTTGCAAAGGTTTC+AGG - chr5.4:76516142-76516161 None:intergenic 50.0%
CTCTGAGCATGGATCAGGTT+TGG - chr5.4:76516325-76516344 None:intergenic 50.0%
CTTCTCAAGGATCTCAGGGA+AGG - chr5.4:76516218-76516237 None:intergenic 50.0%
GCTACACAGGTTGTGCTCAT+GGG + chr5.4:76516361-76516380 MS.gene020883:CDS 50.0%
GGTCAGCAACATGGTCGTAA+AGG - chr5.4:76516603-76516622 None:intergenic 50.0%
GGTCATCAGCAAGACCAAGA+GGG - chr5.4:76516465-76516484 None:intergenic 50.0%
GGTGAGTTTCCTGGTGACTA+TGG + chr5.4:76516088-76516107 MS.gene020883:CDS 50.0%
GTTGAAGGCTACAGAGTTGG+TGG + chr5.4:76516388-76516407 MS.gene020883:CDS 50.0%
TCAGCATTCACTGGCAAGAC+TGG + chr5.4:76515580-76515599 MS.gene020883:CDS 50.0%
TCTTGCAATCTGGGCTACAC+AGG + chr5.4:76516348-76516367 MS.gene020883:CDS 50.0%
! AGAGGGTGGCCTTGACTATT+TGG + chr5.4:76516294-76516313 MS.gene020883:CDS 50.0%
! GAATGCTCTGAGCATGGATC+AGG - chr5.4:76516330-76516349 None:intergenic 50.0%
! GAGGGTGGCCTTGACTATTT+GGG + chr5.4:76516295-76516314 MS.gene020883:CDS 50.0%
!! AGAGTGCTCCTGAGAGCATT+TGG + chr5.4:76515680-76515699 MS.gene020883:CDS 50.0%
!! ATGGGCTATGCTTGGTGCAT+TGG + chr5.4:76516186-76516205 MS.gene020883:CDS 50.0%
!! TGGGCTATGCTTGGTGCATT+GGG + chr5.4:76516187-76516206 MS.gene020883:CDS 50.0%
AGGCACCACCAGGGTATAGT+GGG - chr5.4:76516438-76516457 None:intergenic 55.0%
AGGGCCCTTGCCAGTAACAA+TGG - chr5.4:76516572-76516591 None:intergenic 55.0%
CCAAGTACTTGGGACGGTCA+GGG - chr5.4:76516033-76516052 None:intergenic 55.0%
CCTGACCGTCCCAAGTACTT+GGG + chr5.4:76516031-76516050 MS.gene020883:CDS 55.0%
CGGTGAGGCTGTGTGGTTTA+AGG + chr5.4:76516252-76516271 MS.gene020883:CDS 55.0%
CTAGACCCACTATACCCTGG+TGG + chr5.4:76516430-76516449 MS.gene020883:CDS 55.0%
GACTATGGATGGGACACAGC+TGG + chr5.4:76516103-76516122 MS.gene020883:CDS 55.0%
GGAACTCAAGAACGGCCGAT+TGG + chr5.4:76516513-76516532 MS.gene020883:CDS 55.0%
GGACTAGACCCACTATACCC+TGG + chr5.4:76516427-76516446 MS.gene020883:CDS 55.0%
GGCTACACAGGTTGTGCTCA+TGG + chr5.4:76516360-76516379 MS.gene020883:CDS 55.0%
GGGTCATCAGCAAGACCAAG+AGG - chr5.4:76516466-76516485 None:intergenic 55.0%
GGGTCTAGTCCTTCACCAAG+TGG - chr5.4:76516418-76516437 None:intergenic 55.0%
GGTGCCCAGATCTTCTCAGA+GGG + chr5.4:76516277-76516296 MS.gene020883:CDS 55.0%
GTGTCCCATCCATAGTCACC+AGG - chr5.4:76516100-76516119 None:intergenic 55.0%
TGGTGCCCAGATCTTCTCAG+AGG + chr5.4:76516276-76516295 MS.gene020883:CDS 55.0%
! AAGGCACCACCAGGGTATAG+TGG - chr5.4:76516439-76516458 None:intergenic 55.0%
! GAGGCTGTGTGGTTTAAGGC+TGG + chr5.4:76516256-76516275 MS.gene020883:CDS 55.0%
! GCCACCCTCTGAGAAGATCT+GGG - chr5.4:76516284-76516303 None:intergenic 55.0%
!! AGAGTTGGTGGAGGACCACT+TGG + chr5.4:76516400-76516419 MS.gene020883:CDS 55.0%
!! CACAGCAGATGGGCTATGCT+TGG + chr5.4:76516178-76516197 MS.gene020883:CDS 55.0%
!! GAAGGCTACAGAGTTGGTGG+AGG + chr5.4:76516391-76516410 MS.gene020883:CDS 55.0%
ACCCTGTCGCCAACAACGCA+TGG + chr5.4:76516620-76516639 MS.gene020883:CDS 60.0%
CCCAAGTACTTGGGACGGTC+AGG - chr5.4:76516034-76516053 None:intergenic 60.0%
CCCATGCGTTGTTGGCGACA+GGG - chr5.4:76516624-76516643 None:intergenic 60.0%
CCCTGACCGTCCCAAGTACT+TGG + chr5.4:76516030-76516049 MS.gene020883:CDS 60.0%
CCCTGTCGCCAACAACGCAT+GGG + chr5.4:76516621-76516640 MS.gene020883:CDS 60.0%
GCCCAGATCTTCTCAGAGGG+TGG + chr5.4:76516280-76516299 MS.gene020883:CDS 60.0%
GGTGGTGCCTTTGACCCTCT+TGG + chr5.4:76516448-76516467 MS.gene020883:CDS 60.0%
TGGCGACAGGGTCAGCAACA+TGG - chr5.4:76516612-76516631 None:intergenic 60.0%
! GGCCACCCTCTGAGAAGATC+TGG - chr5.4:76516285-76516304 None:intergenic 60.0%
! GGTGGAGGACCACTTGGTGA+AGG + chr5.4:76516406-76516425 MS.gene020883:CDS 60.0%
!! AGAGGGTCAAAGGCACCACC+AGG - chr5.4:76516448-76516467 None:intergenic 60.0%
!! GAGGGTCAAAGGCACCACCA+GGG - chr5.4:76516447-76516466 None:intergenic 60.0%
GCCCATGCGTTGTTGGCGAC+AGG - chr5.4:76516625-76516644 None:intergenic 65.0%
GGGACGGTCAGGGCCATACC+TGG - chr5.4:76516023-76516042 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr5.4 gene 76515556 76516675 76515556 ID=MS.gene020883
chr5.4 mRNA 76515556 76516675 76515556 ID=MS.gene020883.t1;Parent=MS.gene020883
chr5.4 exon 76515556 76515701 76515556 ID=MS.gene020883.t1.exon1;Parent=MS.gene020883.t1
chr5.4 CDS 76515556 76515701 76515556 ID=cds.MS.gene020883.t1;Parent=MS.gene020883.t1
chr5.4 exon 76516024 76516675 76516024 ID=MS.gene020883.t1.exon2;Parent=MS.gene020883.t1
chr5.4 CDS 76516024 76516675 76516024 ID=cds.MS.gene020883.t1;Parent=MS.gene020883.t1
Gene Sequence

>MS.gene020883

ATGGCCACCTCTGCAATCCAACAATCAGCATTCACTGGCAAGACTGGTTTGAAACAAGGAAATGAGTTCATCAGGAAAGCTGGTAACTTTGGTCAAAGTCGCTTCACCATGCGTCGTACTGTGAAGAGTGCTCCTGAGAGCATTTGGTAAGTAGTTCAATTACAGTCAAAATTAGCTTAAAATACAATAAGTTATAGATTTTAACACTCCTTTATCTCATCATGACTCTTGAGAACATAATAACTAATTCTAAGCTAGATGTGCAGACCCAAAAGCTAAAATTATGCAGGTGTAATGTAATAAATTAAATCAAATGTTAATAACTAACTGGTGATACAGCTACATAAAGTTATTATGTTATCTTGTAAAGATCAAATCAAAAGCAACATCATGTGCTAATATTTGAAGTAAGGTTGTGATAATTTGTTTTCATATATTTGACTTGGTATGATCTGTTTTGAAAACCAGGTATGGCCCTGACCGTCCCAAGTACTTGGGTCCATTCTCTGAGCAAATTCCATCATACTTGACTGGTGAGTTTCCTGGTGACTATGGATGGGACACAGCTGGATTATCAGCTGATCCTGAAACCTTTGCAAGGAACCGTGAGCTTGAAGTAATTCACAGCAGATGGGCTATGCTTGGTGCATTGGGATGTACCTTCCCTGAGATCCTTGAGAAGAACGGTGTTAAATTCGGTGAGGCTGTGTGGTTTAAGGCTGGTGCCCAGATCTTCTCAGAGGGTGGCCTTGACTATTTGGGCAACCCAAACCTGATCCATGCTCAGAGCATTCTTGCAATCTGGGCTACACAGGTTGTGCTCATGGGATTTGTTGAAGGCTACAGAGTTGGTGGAGGACCACTTGGTGAAGGACTAGACCCACTATACCCTGGTGGTGCCTTTGACCCTCTTGGTCTTGCTGATGACCCTGATGCATTCGCAGAGTTGAAGGTCAAGGAACTCAAGAACGGCCGATTGGCTATGTTCTCCATGTTTGGTTTCTTTGTTCAAGCCATTGTTACTGGCAAGGGCCCTGTTCAGAACCTTTACGACCATGTTGCTGACCCTGTCGCCAACAACGCATGGGCATATGCTACTAACTTCGTCCCCGGACAATGA
Protein sequence

>MS.gene020883.t1

MATSAIQQSAFTGKTGLKQGNEFIRKAGNFGQSRFTMRRTVKSAPESIWYGPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPEILEKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWATQVVLMGFVEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPVQNLYDHVADPVANNAWAYATNFVPGQ