AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene99767


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene99767.t1 MTR_2g081090 100.000 264 0 0 1 264 1 264 0.0 538
MS.gene99767.t1 MTR_2g081090 100.000 223 0 0 42 264 15 237 1.33e-165 458
MS.gene99767.t1 MTR_5g097280 69.288 267 69 6 8 264 2 265 1.36e-125 358
MS.gene99767.t1 MTR_4g094605 68.635 271 68 5 4 263 1 265 2.33e-122 350
MS.gene99767.t1 MTR_6g012080 78.899 218 44 2 46 263 49 264 8.70e-121 345
MS.gene99767.t1 MTR_6g012110 77.982 218 46 2 46 263 49 264 2.85e-119 342
MS.gene99767.t1 MTR_6g011890 77.523 218 47 2 46 263 49 264 7.80e-119 340
MS.gene99767.t1 MTR_6g011870 77.523 218 47 2 46 263 49 264 7.89e-119 340
MS.gene99767.t1 MTR_6g011880 77.523 218 47 2 46 263 49 264 9.93e-119 340
MS.gene99767.t1 MTR_6g043600 67.982 228 51 2 36 263 23 228 2.55e-102 297
MS.gene99767.t1 MTR_6g060175 48.361 244 110 6 14 252 42 274 2.35e-58 187
MS.gene99767.t1 MTR_1g026550 40.230 261 141 4 7 252 62 322 7.46e-58 187
MS.gene99767.t1 MTR_6g060175 46.721 244 104 7 14 252 42 264 1.01e-51 170
MS.gene99767.t1 MTR_5g098785 41.014 217 95 8 59 252 63 269 8.36e-37 131
MS.gene99767.t1 MTR_5g098780 41.014 217 95 9 59 252 61 267 6.45e-36 129
MS.gene99767.t1 MTR_8g023790 34.274 248 124 10 17 248 32 256 3.85e-33 122
MS.gene99767.t1 MTR_3g101670 37.624 202 94 5 63 248 68 253 6.17e-32 119
MS.gene99767.t1 MTR_6g033320 37.557 221 109 9 35 252 39 233 1.35e-30 114
MS.gene99767.t1 MTR_2g042720 35.909 220 97 7 49 248 60 255 2.29e-30 114
MS.gene99767.t1 MTR_4g015570 35.622 233 92 7 60 249 61 278 5.18e-29 111
MS.gene99767.t1 MTR_3g435460 37.255 204 92 7 62 251 62 243 2.59e-27 106
MS.gene99767.t1 MTR_1g026550 33.721 172 105 3 7 169 62 233 8.39e-27 104
MS.gene99767.t1 MTR_3g435460 36.224 196 89 7 70 251 9 182 1.76e-23 94.7
MS.gene99767.t1 MTR_3g070340 41.611 149 72 5 90 238 137 270 5.60e-22 92.4
MS.gene99767.t1 MTR_2g008610 34.615 208 86 7 63 241 73 259 5.72e-21 89.4
MS.gene99767.t1 MTR_5g098770 48.750 80 40 1 181 260 15 93 7.32e-20 82.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene99767.t1 AT5G54270 87.547 265 32 1 1 264 1 265 2.68e-174 481
MS.gene99767.t1 AT2G05070 68.421 266 71 6 8 263 2 264 8.37e-124 353
MS.gene99767.t1 AT2G05100 68.914 267 70 6 8 264 2 265 1.53e-123 352
MS.gene99767.t1 AT3G27690 67.399 273 75 7 2 263 28 297 4.31e-122 350
MS.gene99767.t1 AT3G27690 68.401 269 75 6 1 263 1 265 8.68e-122 348
MS.gene99767.t1 AT2G34430 67.037 270 74 6 4 263 1 265 2.88e-118 339
MS.gene99767.t1 AT1G29930 65.683 271 77 6 4 263 1 266 3.55e-118 339
MS.gene99767.t1 AT1G29920 65.683 271 77 6 4 263 1 266 6.01e-118 338
MS.gene99767.t1 AT1G29910 65.683 271 77 6 4 263 1 266 6.01e-118 338
MS.gene99767.t1 AT2G34420 66.543 269 73 6 6 263 2 264 1.30e-117 337
MS.gene99767.t1 AT2G05100 62.030 266 84 7 8 259 2 264 4.80e-103 302
MS.gene99767.t1 AT1G76570 46.977 215 106 2 46 252 106 320 4.17e-59 191
MS.gene99767.t1 AT4G10340 49.524 210 97 4 46 252 62 265 5.15e-53 174
MS.gene99767.t1 AT1G61520 42.857 217 91 9 59 252 59 265 2.39e-39 138
MS.gene99767.t1 AT1G61520 42.857 217 91 9 59 252 59 265 2.39e-39 138
MS.gene99767.t1 AT1G61520 42.029 207 87 9 69 252 14 210 4.92e-35 125
MS.gene99767.t1 AT3G61470 38.140 215 99 10 49 248 50 245 4.35e-34 124
MS.gene99767.t1 AT1G45474 40.206 194 101 4 63 248 56 242 3.81e-33 121
MS.gene99767.t1 AT1G45474 40.206 194 101 4 63 248 56 242 3.81e-33 121
MS.gene99767.t1 AT3G08940 35.622 233 92 7 60 249 59 276 6.69e-31 116
MS.gene99767.t1 AT3G54890 40.206 194 96 8 63 252 55 232 2.05e-30 114
MS.gene99767.t1 AT1G19150 35.111 225 100 8 49 252 63 262 2.74e-28 109
MS.gene99767.t1 AT3G47470 37.255 204 92 6 62 251 63 244 1.92e-27 106
MS.gene99767.t1 AT5G01530 34.322 236 97 7 60 252 62 282 2.12e-27 107
MS.gene99767.t1 AT1G15820 35.096 208 85 7 63 241 70 256 3.74e-21 90.1
MS.gene99767.t1 AT2G40100 41.447 152 73 5 90 241 136 271 8.41e-21 89.4
MS.gene99767.t1 AT3G54890 37.975 158 79 7 63 217 55 196 1.64e-19 84.7
MS.gene99767.t1 AT5G28450 48.718 78 36 2 172 248 87 161 1.36e-14 70.5

Find 95 sgRNAs with CRISPR-Local

Find 177 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGGTGGTCTTGACTATTT+AGG 0.130970 2.1:+19689919 MS.gene99767:CDS
CTGTTCTTGGCAAATGCTTC+TGG 0.168930 2.1:-19689021 None:intergenic
GGCATAAACCCAGGCATTAT+TGG 0.260488 2.1:-19690256 None:intergenic
AGGACCTTTGGAGAATCTTT+TGG 0.271440 2.1:+19690212 MS.gene99767:CDS
GGAGAATTCCCTGGTGATTA+TGG 0.284769 2.1:+19688970 MS.gene99767:CDS
ACCAGACAGAGTGAAATATT+TGG 0.293839 2.1:+19688912 MS.gene99767:CDS
AGGTTTCCAAGTTGTTCTAA+TGG 0.320920 2.1:+19689984 MS.gene99767:CDS
TTAAGCTCGGCGAAAGTAAC+TGG 0.331652 2.1:-19690111 None:intergenic
CCAGACAGAGTGAAATATTT+GGG 0.332386 2.1:+19688913 MS.gene99767:CDS
AACCTCAAGAGCCCTGTTCT+TGG 0.335763 2.1:-19689034 None:intergenic
AAGGTGGTCTTGACTATTTA+GGG 0.341687 2.1:+19689920 MS.gene99767:CDS
CTTTGTGCATGAACAAGGTT+TGG 0.349100 2.1:-19689946 None:intergenic
TTCCGCATCAACGGTCTTCC+TGG 0.355033 2.1:+19690021 MS.gene99767:CDS
GGTTTCCAAGTTGTTCTAAT+GGG 0.357946 2.1:+19689985 MS.gene99767:CDS
ACCCAGGCATTATTGGCAAC+AGG 0.364495 2.1:-19690249 None:intergenic
CCCAAATATTTCACTCTGTC+TGG 0.371437 2.1:-19688913 None:intergenic
CAGAAGCATTTGCCAAGAAC+AGG 0.372548 2.1:+19689022 MS.gene99767:CDS
TGTCACTGGTAAAGGACCTT+TGG 0.380892 2.1:+19690200 MS.gene99767:CDS
TTGATTTCAAAGAACCAGTT+TGG 0.381372 2.1:+19689869 MS.gene99767:CDS
CAGACTCCTTCATACTTAAC+TGG 0.384985 2.1:+19688949 MS.gene99767:CDS
GAAGGAGTCTGAGCTGAAAA+TGG 0.411828 2.1:-19688937 None:intergenic
CAAAGCATCTTAGCAGTACT+AGG 0.430115 2.1:+19689964 MS.gene99767:CDS
CAAGCTATTGTCACTGGTAA+AGG 0.430252 2.1:+19690192 MS.gene99767:CDS
GATCCTGCTTTGAACCAAAC+TGG 0.431531 2.1:-19689883 None:intergenic
GGAACAAATCATGGCATTGA+TGG 0.432925 2.1:+19688158 None:intergenic
GGCCAATACTTTGACCCTCT+TGG 0.435489 2.1:+19690075 MS.gene99767:CDS
GGAAATCAAGAATGGAAGAT+TGG 0.436306 2.1:+19690140 MS.gene99767:CDS
TATGCCACCAAGTTTGTGCC+TGG 0.443893 2.1:+19690273 MS.gene99767:CDS
GTTAAACAAACTCCTTTCCT+TGG 0.446741 2.1:+19688201 MS.gene99767:CDS
TGAAGGTGATCCATGGAAGA+TGG 0.451873 2.1:+19689788 MS.gene99767:intron
ACCCTGTTGCCAATAATGCC+TGG 0.466859 2.1:+19690247 MS.gene99767:CDS
TTTGTTCAAGCTATTGTCAC+TGG 0.469594 2.1:+19690186 MS.gene99767:CDS
GGGAACCTCAAGATTCACTA+TGG 0.472897 2.1:+19688269 MS.gene99767:CDS
GTTCTAATGGGTCTTGTCGA+AGG 0.474424 2.1:+19689997 MS.gene99767:CDS
CCCTGTTGCCAATAATGCCT+GGG 0.476932 2.1:+19690248 MS.gene99767:CDS
AGTATTGGCCACCGGGGTAA+AGG 0.480000 2.1:-19690062 None:intergenic
GACCAAGAGGGTCAAAGTAT+TGG 0.490473 2.1:-19690077 None:intergenic
TCCTTTCCTTGGTCAAAGGA+AGG 0.490595 2.1:+19688212 MS.gene99767:CDS
TGGGCTATGCTAGGAGCACT+TGG 0.498240 2.1:+19689808 MS.gene99767:CDS
GATTTCCTTCACTTTAAGCT+CGG 0.504343 2.1:-19690124 None:intergenic
TTCTAATGGGTCTTGTCGAA+GGG 0.505605 2.1:+19689998 MS.gene99767:CDS
TTTGTGCATGAACAAGGTTT+GGG 0.509110 2.1:-19689945 None:intergenic
CAAGACCCATTAGAACAACT+TGG 0.511234 2.1:-19689990 None:intergenic
AAACTCCTTTCCTTGGTCAA+AGG 0.511273 2.1:+19688208 MS.gene99767:CDS
GGGTCAAAGTATTGGCCACC+GGG 0.513825 2.1:-19690069 None:intergenic
CAGCACCCTTCCTTTGACCA+AGG 0.515079 2.1:-19688218 None:intergenic
TGCCAAGAACAGGGCTCTTG+AGG 0.515098 2.1:+19689032 MS.gene99767:CDS
TTAAGAACCAGGCACAAACT+TGG 0.519988 2.1:-19690280 None:intergenic
CTAGCATAGCCCATCTTCCA+TGG 0.521302 2.1:-19689798 None:intergenic
GTCGAAGGGTTCCGCATCAA+CGG 0.526007 2.1:+19690012 MS.gene99767:CDS
AATTCCCTGGTGATTATGGA+TGG 0.526464 2.1:+19688974 MS.gene99767:CDS
GAACCAGTTTGGTTCAAAGC+AGG 0.531298 2.1:+19689880 MS.gene99767:CDS
CTTAGAGATGTTGTCGCCAT+GGG 0.532010 2.1:+19688249 MS.gene99767:CDS
TACTTAACTGGAGAATTCCC+TGG 0.533200 2.1:+19688961 MS.gene99767:CDS
GAAGGTGATCCATGGAAGAT+GGG 0.534211 2.1:+19689789 MS.gene99767:intron
ATGGCGACAACATCTCTAAG+AGG 0.535432 2.1:-19688246 None:intergenic
TTGTTGCCCTCTCCGACACC+AGG 0.535866 2.1:-19690039 None:intergenic
GATTATGGATGGGACACTGC+TGG 0.539551 2.1:+19688985 MS.gene99767:CDS
TTTCGCCGAGCTTAAAGTGA+AGG 0.543825 2.1:+19690119 MS.gene99767:CDS
AGGGTCAAAGTATTGGCCAC+CGG 0.544782 2.1:-19690070 None:intergenic
AAAGTGAAGGAAATCAAGAA+TGG 0.545234 2.1:+19690132 MS.gene99767:CDS
GGTCTTCCTGGTGTCGGAGA+GGG 0.548663 2.1:+19690033 MS.gene99767:CDS
AGATGCTTTGTGCATGAACA+AGG 0.550454 2.1:-19689951 None:intergenic
TCTTAGAGATGTTGTCGCCA+TGG 0.551003 2.1:+19688248 MS.gene99767:CDS
CATGGAAGATGGGCTATGCT+AGG 0.554415 2.1:+19689799 MS.gene99767:CDS
AACATTGATGTTTAAGAACC+AGG 0.556979 2.1:-19690291 None:intergenic
AATTCTCCAGTTAAGTATGA+AGG 0.558241 2.1:-19688955 None:intergenic
GTGTCCCATCCATAATCACC+AGG 0.560079 2.1:-19688979 None:intergenic
CCTTTCCTTGGTCAAAGGAA+GGG 0.568157 2.1:+19688213 MS.gene99767:CDS
GACAACATCTCTAAGAGGGT+TGG 0.572370 2.1:-19688241 None:intergenic
CGGTCTTCCTGGTGTCGGAG+AGG 0.575168 2.1:+19690032 MS.gene99767:CDS
ATCAACGGTCTTCCTGGTGT+CGG 0.580505 2.1:+19690027 MS.gene99767:CDS
CCCAGGCATTATTGGCAACA+GGG 0.587322 2.1:-19690248 None:intergenic
AAGGGAAATGAATTGTGGTA+TGG 0.602138 2.1:+19688889 MS.gene99767:intron
AGAACCAGGCACAAACTTGG+TGG 0.606113 2.1:-19690277 None:intergenic
AGTGAATCTTGAGGTTCCCA+TGG 0.607906 2.1:-19688265 None:intergenic
CCCTTCCTTTGACCAAGGAA+AGG 0.609595 2.1:-19688213 None:intergenic
GGATCGCAAATCTTCTCAGA+AGG 0.611974 2.1:+19689901 MS.gene99767:CDS
CACCAGGAAGACCGTTGATG+CGG 0.612040 2.1:-19690023 None:intergenic
TCGCAAATCTTCTCAGAAGG+TGG 0.619983 2.1:+19689904 MS.gene99767:CDS
ATTCCCTGGTGATTATGGAT+GGG 0.621810 2.1:+19688975 MS.gene99767:CDS
AGAAGCATTTGCCAAGAACA+GGG 0.625251 2.1:+19689023 MS.gene99767:CDS
TGGCGACAACATCTCTAAGA+GGG 0.635101 2.1:-19688245 None:intergenic
TTGTGAAGGGAAATGAATTG+TGG 0.635151 2.1:+19688884 MS.gene99767:intron
GGCGAAAGTAACTGGATCGT+CGG 0.650985 2.1:-19690103 None:intergenic
GGATCGTCGGCTAGACCAAG+AGG 0.652317 2.1:-19690090 None:intergenic
TGATCCAAAAGATTCTCCAA+AGG 0.654984 2.1:-19690216 None:intergenic
AAACTTGGTGGCATAAACCC+AGG 0.664430 2.1:-19690265 None:intergenic
AAATACCATAGTGAATCTTG+AGG 0.669239 2.1:-19688274 None:intergenic
GGCAACAACCTTTACCCCGG+TGG 0.677675 2.1:+19690054 MS.gene99767:CDS
GAGGGCAACAACCTTTACCC+CGG 0.679387 2.1:+19690051 MS.gene99767:CDS
GATCGTCGGCTAGACCAAGA+GGG 0.686043 2.1:-19690089 None:intergenic
CAGACAGAGTGAAATATTTG+GGG 0.720681 2.1:+19688914 MS.gene99767:CDS
GGTCAAAGTATTGGCCACCG+GGG 0.727260 2.1:-19690068 None:intergenic
TGTCCCATCCATAATCACCA+GGG 0.728458 2.1:-19688978 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATCGTAAAAAAAAAT+GGG + chr2.1:19689480-19689499 MS.gene99767:intron 10.0%
!! AAAAATTTCACTATATTTAT+AGG + chr2.1:19688320-19688339 MS.gene99767:intron 10.0%
!! GAAAAAATCATAAAAAATTT+CGG + chr2.1:19689411-19689430 MS.gene99767:intron 10.0%
!! TTAATTATTAGATACAATAT+TGG - chr2.1:19688411-19688430 None:intergenic 10.0%
!!! GAAATTTTTACTAAAAAAAT+AGG - chr2.1:19688309-19688328 None:intergenic 10.0%
!! AAAAATCGTAAAAAAAAATG+GGG + chr2.1:19689481-19689500 MS.gene99767:intron 15.0%
!! ACATAACTTAATATCTTTAT+CGG - chr2.1:19689761-19689780 None:intergenic 15.0%
!! GAAAAAATCGTAAAAAAAAA+TGG + chr2.1:19689479-19689498 MS.gene99767:intron 15.0%
!! TAAAGAGTGAATAATTTATA+GGG + chr2.1:19689159-19689178 MS.gene99767:intron 15.0%
!! TTAGAAAAAAAACATAAGAA+TGG - chr2.1:19689106-19689125 None:intergenic 15.0%
!!! AAAATCATACTTTTTTTTTG+AGG - chr2.1:19688453-19688472 None:intergenic 15.0%
!!! AAATCATACTTTTTTTTTGA+GGG - chr2.1:19688452-19688471 None:intergenic 15.0%
!!! TAGAATGTTAACAAAATTTT+TGG - chr2.1:19689141-19689160 None:intergenic 15.0%
!!! TTTTTTTTACGATTTTTTCT+CGG - chr2.1:19689478-19689497 None:intergenic 15.0%
!! AAAACAAAAAAAAATAAGCC+AGG + chr2.1:19689536-19689555 MS.gene99767:intron 20.0%
!! AAACAAAAAAAAATAAGCCA+GGG + chr2.1:19689537-19689556 MS.gene99767:intron 20.0%
!! CTAAAGAGTGAATAATTTAT+AGG + chr2.1:19689158-19689177 MS.gene99767:intron 20.0%
!!! AAAAAAAAAGGATTAGTGAT+TGG + chr2.1:19689662-19689681 MS.gene99767:intron 20.0%
!!! ACGTTTAGATATGTTTTTAT+TGG + chr2.1:19688761-19688780 MS.gene99767:intron 20.0%
!!! CAAGTATGTTTTTTTATCAT+TGG + chr2.1:19688517-19688536 MS.gene99767:intron 20.0%
!!! TAAGTTATGTTGAATTTTGA+AGG + chr2.1:19689771-19689790 MS.gene99767:intron 20.0%
!!! TGGAAAAAAAAGTTTTTTGA+AGG + chr2.1:19689511-19689530 MS.gene99767:intron 20.0%
!!! TTAACTGATTAAATTTTGCA+GGG + chr2.1:19689637-19689656 MS.gene99767:intron 20.0%
!!! TTTAACTGATTAAATTTTGC+AGG + chr2.1:19689636-19689655 MS.gene99767:intron 20.0%
! AAAAAAAATGGGGAAAAATC+TGG + chr2.1:19689491-19689510 MS.gene99767:intron 25.0%
! AACAAAAAAAAATAAGCCAG+GGG + chr2.1:19689538-19689557 MS.gene99767:intron 25.0%
! ACTAAAAAAATAGGGAAAAG+AGG - chr2.1:19688300-19688319 None:intergenic 25.0%
! CTAACAAAGTATATGCTTTA+TGG - chr2.1:19688647-19688666 None:intergenic 25.0%
! TAAAAAAACATACTTGTGCA+TGG - chr2.1:19688513-19688532 None:intergenic 25.0%
! TAAGGAAAAAAAATAAGCCA+GGG - chr2.1:19689340-19689359 None:intergenic 25.0%
! TTAAAAATGCTCCAAAACTA+TGG + chr2.1:19689068-19689087 MS.gene99767:intron 25.0%
! TTAACTGATTAAACTTTGCA+GGG - chr2.1:19689262-19689281 None:intergenic 25.0%
! TTAAGGAAAAAAAATAAGCC+AGG - chr2.1:19689341-19689360 None:intergenic 25.0%
! TTTAACTGATTAAACTTTGC+AGG - chr2.1:19689263-19689282 None:intergenic 25.0%
!! ATGAGAAAAAACCATAGTTT+TGG - chr2.1:19689082-19689101 None:intergenic 25.0%
!! TAACTGATTAAATTTTGCAG+GGG + chr2.1:19689638-19689657 MS.gene99767:intron 25.0%
!!! GGTGTCACTAATATAAATTA+GGG - chr2.1:19689740-19689759 None:intergenic 25.0%
!!! TTTATATAGTGTTGCTTATG+TGG + chr2.1:19688837-19688856 MS.gene99767:intron 25.0%
AAAGTGAAGGAAATCAAGAA+TGG + chr2.1:19690132-19690151 MS.gene99767:CDS 30.0%
AAATACCATAGTGAATCTTG+AGG - chr2.1:19688277-19688296 None:intergenic 30.0%
AAATGTGTGATGCTACTAAT+TGG + chr2.1:19688366-19688385 MS.gene99767:intron 30.0%
AAGGAAAAAAAATAAGCCAG+GGG - chr2.1:19689339-19689358 None:intergenic 30.0%
AATTCTCCAGTTAAGTATGA+AGG - chr2.1:19688958-19688977 None:intergenic 30.0%
ATGCTTTATGGCCAATTATA+TGG - chr2.1:19688635-19688654 None:intergenic 30.0%
ATTGTGTTTGTGATTGTGAA+GGG + chr2.1:19688871-19688890 MS.gene99767:intron 30.0%
TAACTAATGATAGACACGTT+CGG + chr2.1:19688717-19688736 MS.gene99767:intron 30.0%
TAACTGATTAAACTTTGCAG+GGG - chr2.1:19689261-19689280 None:intergenic 30.0%
TTAGTAGCATCACACATTTA+AGG - chr2.1:19688365-19688384 None:intergenic 30.0%
TTGATTTCAAAGAACCAGTT+TGG + chr2.1:19689869-19689888 MS.gene99767:CDS 30.0%
TTTGTTTCGCACCATATAAT+TGG + chr2.1:19688621-19688640 MS.gene99767:intron 30.0%
! ACCTGAAGTACTTGAAAAAT+GGG + chr2.1:19689840-19689859 MS.gene99767:CDS 30.0%
!! CGGTGTCACTAATATAAATT+AGG - chr2.1:19689741-19689760 None:intergenic 30.0%
AACTAATGATAGACACGTTC+GGG + chr2.1:19688718-19688737 MS.gene99767:intron 35.0%
AAGGGAAATGAATTGTGGTA+TGG + chr2.1:19688889-19688908 MS.gene99767:intron 35.0%
ACCAGACAGAGTGAAATATT+TGG + chr2.1:19688912-19688931 MS.gene99767:CDS 35.0%
AGGTTTCCAAGTTGTTCTAA+TGG + chr2.1:19689984-19690003 MS.gene99767:CDS 35.0%
CAGACAGAGTGAAATATTTG+GGG + chr2.1:19688914-19688933 MS.gene99767:CDS 35.0%
CAGTGATTAAATTGGGTCAA+AGG + chr2.1:19689606-19689625 MS.gene99767:intron 35.0%
CATTGTGTTTGTGATTGTGA+AGG + chr2.1:19688870-19688889 MS.gene99767:intron 35.0%
CCAGACAGAGTGAAATATTT+GGG + chr2.1:19688913-19688932 MS.gene99767:CDS 35.0%
GATTTCCTTCACTTTAAGCT+CGG - chr2.1:19690127-19690146 None:intergenic 35.0%
GGAAATCAAGAATGGAAGAT+TGG + chr2.1:19690140-19690159 MS.gene99767:CDS 35.0%
GGTTTCCAAGTTGTTCTAAT+GGG + chr2.1:19689985-19690004 MS.gene99767:CDS 35.0%
GTTAAACAAACTCCTTTCCT+TGG + chr2.1:19688201-19688220 MS.gene99767:CDS 35.0%
TGATCCAAAAGATTCTCCAA+AGG - chr2.1:19690219-19690238 None:intergenic 35.0%
TTGTGAAGGGAAATGAATTG+TGG + chr2.1:19688884-19688903 MS.gene99767:intron 35.0%
TTTGTGCATGAACAAGGTTT+GGG - chr2.1:19689948-19689967 None:intergenic 35.0%
TTTGTTCAAGCTATTGTCAC+TGG + chr2.1:19690186-19690205 MS.gene99767:CDS 35.0%
! AAAAAAGGATTAGCGATTGC+AGG - chr2.1:19689234-19689253 None:intergenic 35.0%
! AAAAAGGATTAGCGATTGCA+GGG - chr2.1:19689233-19689252 None:intergenic 35.0%
! AAGGTGGTCTTGACTATTTA+GGG + chr2.1:19689920-19689939 MS.gene99767:CDS 35.0%
! CACCTGAAGTACTTGAAAAA+TGG + chr2.1:19689839-19689858 MS.gene99767:CDS 35.0%
! TTGGCTATGTTTTCGATGTT+TGG + chr2.1:19690159-19690178 MS.gene99767:CDS 35.0%
! TTTTGCAGGGGCAAAAAAAA+AGG + chr2.1:19689650-19689669 MS.gene99767:intron 35.0%
!! TGAATTTTGAAGGTGATCCA+TGG + chr2.1:19689781-19689800 MS.gene99767:intron 35.0%
!!! ACCCATTTTTCAAGTACTTC+AGG - chr2.1:19689844-19689863 None:intergenic 35.0%
AAACTCCTTTCCTTGGTCAA+AGG + chr2.1:19688208-19688227 MS.gene99767:CDS 40.0%
AATTCCCTGGTGATTATGGA+TGG + chr2.1:19688974-19688993 MS.gene99767:CDS 40.0%
ACGTCAGCAAATGACCAAAA+GGG - chr2.1:19689584-19689603 None:intergenic 40.0%
AGATGCTTTGTGCATGAACA+AGG - chr2.1:19689954-19689973 None:intergenic 40.0%
ATTCCCTGGTGATTATGGAT+GGG + chr2.1:19688975-19688994 MS.gene99767:CDS 40.0%
CAAGACCCATTAGAACAACT+TGG - chr2.1:19689993-19690012 None:intergenic 40.0%
CAAGCTATTGTCACTGGTAA+AGG + chr2.1:19690192-19690211 MS.gene99767:CDS 40.0%
CAGACTCCTTCATACTTAAC+TGG + chr2.1:19688949-19688968 MS.gene99767:CDS 40.0%
CAGTGATTAAACTGGGTCAA+AGG - chr2.1:19689293-19689312 None:intergenic 40.0%
CCCAAATATTTCACTCTGTC+TGG - chr2.1:19688916-19688935 None:intergenic 40.0%
CTTTGCAGGGGCAAAAAAAA+AGG - chr2.1:19689249-19689268 None:intergenic 40.0%
CTTTGTGCATGAACAAGGTT+TGG - chr2.1:19689949-19689968 None:intergenic 40.0%
GACGTGGCAGTGATTAAATT+GGG + chr2.1:19689599-19689618 MS.gene99767:intron 40.0%
TACTTAACTGGAGAATTCCC+TGG + chr2.1:19688961-19688980 MS.gene99767:CDS 40.0%
TGACGTGGCAGTGATTAAAT+TGG + chr2.1:19689598-19689617 MS.gene99767:intron 40.0%
TTAAGAACCAGGCACAAACT+TGG - chr2.1:19690283-19690302 None:intergenic 40.0%
! CAAAGCATCTTAGCAGTACT+AGG + chr2.1:19689964-19689983 MS.gene99767:CDS 40.0%
! GAAGGTGGTCTTGACTATTT+AGG + chr2.1:19689919-19689938 MS.gene99767:CDS 40.0%
! TTCTAATGGGTCTTGTCGAA+GGG + chr2.1:19689998-19690017 MS.gene99767:CDS 40.0%
!! AGAAGCATTTGCCAAGAACA+GGG + chr2.1:19689023-19689042 MS.gene99767:CDS 40.0%
!! AGGACCTTTGGAGAATCTTT+TGG + chr2.1:19690212-19690231 MS.gene99767:CDS 40.0%
AGTGAATCTTGAGGTTCCCA+TGG - chr2.1:19688268-19688287 None:intergenic 45.0%
ATGGCGACAACATCTCTAAG+AGG - chr2.1:19688249-19688268 None:intergenic 45.0%
CACGTCAGCAAATGACCAAA+AGG - chr2.1:19689585-19689604 None:intergenic 45.0%
CCTTTCCTTGGTCAAAGGAA+GGG + chr2.1:19688213-19688232 MS.gene99767:CDS 45.0%
CTGTTCTTGGCAAATGCTTC+TGG - chr2.1:19689024-19689043 None:intergenic 45.0%
CTTAGAGATGTTGTCGCCAT+GGG + chr2.1:19688249-19688268 MS.gene99767:CDS 45.0%
GAAGGAGTCTGAGCTGAAAA+TGG - chr2.1:19688940-19688959 None:intergenic 45.0%
GAAGGTGATCCATGGAAGAT+GGG + chr2.1:19689789-19689808 MS.gene99767:intron 45.0%
GACCAAGAGGGTCAAAGTAT+TGG - chr2.1:19690080-19690099 None:intergenic 45.0%
GACGTGGCAGTGATTAAACT+GGG - chr2.1:19689300-19689319 None:intergenic 45.0%
GGAGAATTCCCTGGTGATTA+TGG + chr2.1:19688970-19688989 MS.gene99767:CDS 45.0%
GGATCGCAAATCTTCTCAGA+AGG + chr2.1:19689901-19689920 MS.gene99767:CDS 45.0%
GGCATAAACCCAGGCATTAT+TGG - chr2.1:19690259-19690278 None:intergenic 45.0%
GGGAACCTCAAGATTCACTA+TGG + chr2.1:19688269-19688288 MS.gene99767:CDS 45.0%
GTGATTCGTCCCTGCAAATA+GGG + chr2.1:19689190-19689209 MS.gene99767:intron 45.0%
GTGATTCGTCCCTGCAAATA+GGG - chr2.1:19689209-19689190 None:intergenic 45.0%
TCCTTTCCTTGGTCAAAGGA+AGG + chr2.1:19688212-19688231 MS.gene99767:CDS 45.0%
TCGCAAATCTTCTCAGAAGG+TGG + chr2.1:19689904-19689923 MS.gene99767:CDS 45.0%
TCTTAGAGATGTTGTCGCCA+TGG + chr2.1:19688248-19688267 MS.gene99767:CDS 45.0%
TGAAGGTGATCCATGGAAGA+TGG + chr2.1:19689788-19689807 MS.gene99767:intron 45.0%
TGACGTGGCAGTGATTAAAC+TGG - chr2.1:19689301-19689320 None:intergenic 45.0%
TGATTCGTCCCTGCAAATAG+GGG - chr2.1:19689210-19689191 None:intergenic 45.0%
TGTCACTGGTAAAGGACCTT+TGG + chr2.1:19690200-19690219 MS.gene99767:CDS 45.0%
TGTCCCATCCATAATCACCA+GGG - chr2.1:19688981-19689000 None:intergenic 45.0%
TGTGATTCGTCCCTGCAAAT+AGG + chr2.1:19689189-19689208 MS.gene99767:intron 45.0%
TGTGATTCGTCCCTGCAAAT+AGG - chr2.1:19689208-19689189 None:intergenic 45.0%
TTAAGCGACCCCTATTTGCA+GGG + chr2.1:19689697-19689716 MS.gene99767:intron 45.0%
TTAAGCGAGCCCTATTTGCA+GGG - chr2.1:19689202-19689221 None:intergenic 45.0%
TTAAGCTCGGCGAAAGTAAC+TGG - chr2.1:19690114-19690133 None:intergenic 45.0%
TTTAAGCGACCCCTATTTGC+AGG + chr2.1:19689696-19689715 MS.gene99767:intron 45.0%
TTTAAGCGAGCCCTATTTGC+AGG - chr2.1:19689203-19689222 None:intergenic 45.0%
TTTCGCCGAGCTTAAAGTGA+AGG + chr2.1:19690119-19690138 MS.gene99767:CDS 45.0%
! AAACTTGGTGGCATAAACCC+AGG - chr2.1:19690268-19690287 None:intergenic 45.0%
! GAACCAGTTTGGTTCAAAGC+AGG + chr2.1:19689880-19689899 MS.gene99767:CDS 45.0%
! GACAACATCTCTAAGAGGGT+TGG - chr2.1:19688244-19688263 None:intergenic 45.0%
! GATCCTGCTTTGAACCAAAC+TGG - chr2.1:19689886-19689905 None:intergenic 45.0%
! GTTCTAATGGGTCTTGTCGA+AGG + chr2.1:19689997-19690016 MS.gene99767:CDS 45.0%
! TATTTTCGTCCTTGCTGACG+TGG - chr2.1:19689316-19689335 None:intergenic 45.0%
! TGGCGACAACATCTCTAAGA+GGG - chr2.1:19688248-19688267 None:intergenic 45.0%
!! CAGAAGCATTTGCCAAGAAC+AGG + chr2.1:19689022-19689041 MS.gene99767:CDS 45.0%
!! CTTTTGGTCATTTGCTGACG+TGG + chr2.1:19689583-19689602 MS.gene99767:intron 45.0%
!!! AAATTTTTACTAAAAAAATA+GGG - chr2.1:19688308-19688327 None:intergenic 5.0%
!!! AATTTTGAATTTTTTTTTTA+AGG - chr2.1:19689358-19689377 None:intergenic 5.0%
AACCTCAAGAGCCCTGTTCT+TGG - chr2.1:19689037-19689056 None:intergenic 50.0%
ACCCAGGCATTATTGGCAAC+AGG - chr2.1:19690252-19690271 None:intergenic 50.0%
ACCCTGTTGCCAATAATGCC+TGG + chr2.1:19690247-19690266 MS.gene99767:CDS 50.0%
AGAACCAGGCACAAACTTGG+TGG - chr2.1:19690280-19690299 None:intergenic 50.0%
AGCAAGGACGAAAATACCCC+TGG + chr2.1:19689320-19689339 MS.gene99767:intron 50.0%
ATCAACGGTCTTCCTGGTGT+CGG + chr2.1:19690027-19690046 MS.gene99767:CDS 50.0%
CCCAGGCATTATTGGCAACA+GGG - chr2.1:19690251-19690270 None:intergenic 50.0%
CCCTGTTGCCAATAATGCCT+GGG + chr2.1:19690248-19690267 MS.gene99767:CDS 50.0%
CCCTTCCTTTGACCAAGGAA+AGG - chr2.1:19688216-19688235 None:intergenic 50.0%
CGAAAGGACGAAAATACCCC+TGG - chr2.1:19689557-19689576 None:intergenic 50.0%
CTAGCATAGCCCATCTTCCA+TGG - chr2.1:19689801-19689820 None:intergenic 50.0%
GATTATGGATGGGACACTGC+TGG + chr2.1:19688985-19689004 MS.gene99767:CDS 50.0%
GGCCAATACTTTGACCCTCT+TGG + chr2.1:19690075-19690094 MS.gene99767:CDS 50.0%
GGCGAAAGTAACTGGATCGT+CGG - chr2.1:19690106-19690125 None:intergenic 50.0%
GTGTCCCATCCATAATCACC+AGG - chr2.1:19688982-19689001 None:intergenic 50.0%
TAATCACTGCCACGTCAGCA+AGG + chr2.1:19689304-19689323 MS.gene99767:intron 50.0%
TATGCCACCAAGTTTGTGCC+TGG + chr2.1:19690273-19690292 MS.gene99767:CDS 50.0%
!! AGGGTCAAAGTATTGGCCAC+CGG - chr2.1:19690073-19690092 None:intergenic 50.0%
!! CATGGAAGATGGGCTATGCT+AGG + chr2.1:19689799-19689818 MS.gene99767:CDS 50.0%
CACCAGGAAGACCGTTGATG+CGG - chr2.1:19690026-19690045 None:intergenic 55.0%
CAGCACCCTTCCTTTGACCA+AGG - chr2.1:19688221-19688240 None:intergenic 55.0%
GAGGGCAACAACCTTTACCC+CGG + chr2.1:19690051-19690070 MS.gene99767:CDS 55.0%
GTCGAAGGGTTCCGCATCAA+CGG + chr2.1:19690012-19690031 MS.gene99767:CDS 55.0%
TGCCAAGAACAGGGCTCTTG+AGG + chr2.1:19689032-19689051 MS.gene99767:CDS 55.0%
TTCCGCATCAACGGTCTTCC+TGG + chr2.1:19690021-19690040 MS.gene99767:CDS 55.0%
! GATCGTCGGCTAGACCAAGA+GGG - chr2.1:19690092-19690111 None:intergenic 55.0%
! TGACCAAAAGGGCACGCGAA+AGG - chr2.1:19689573-19689592 None:intergenic 55.0%
!! AGTATTGGCCACCGGGGTAA+AGG - chr2.1:19690065-19690084 None:intergenic 55.0%
!! GGGTCAAAGTATTGGCCACC+GGG - chr2.1:19690072-19690091 None:intergenic 55.0%
!! GGTCAAAGTATTGGCCACCG+GGG - chr2.1:19690071-19690090 None:intergenic 55.0%
!! TGGGCTATGCTAGGAGCACT+TGG + chr2.1:19689808-19689827 MS.gene99767:CDS 55.0%
GGCAACAACCTTTACCCCGG+TGG + chr2.1:19690054-19690073 MS.gene99767:CDS 60.0%
TTGTTGCCCTCTCCGACACC+AGG - chr2.1:19690042-19690061 None:intergenic 60.0%
! CGTCCTTTCGCGTGCCCTTT+TGG + chr2.1:19689567-19689586 MS.gene99767:intron 60.0%
! GGATCGTCGGCTAGACCAAG+AGG - chr2.1:19690093-19690112 None:intergenic 60.0%
! GGTCTTCCTGGTGTCGGAGA+GGG + chr2.1:19690033-19690052 MS.gene99767:CDS 60.0%
! CGGTCTTCCTGGTGTCGGAG+AGG + chr2.1:19690032-19690051 MS.gene99767:CDS 65.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 19688168 19690302 19688168 ID=MS.gene99767
chr2.1 mRNA 19688168 19690302 19688168 ID=MS.gene99767.t1;Parent=MS.gene99767
chr2.1 exon 19688168 19688290 19688168 ID=MS.gene99767.t1.exon1;Parent=MS.gene99767.t1
chr2.1 CDS 19688168 19688290 19688168 ID=cds.MS.gene99767.t1;Parent=MS.gene99767.t1
chr2.1 exon 19688892 19689053 19688892 ID=MS.gene99767.t1.exon2;Parent=MS.gene99767.t1
chr2.1 CDS 19688892 19689053 19688892 ID=cds.MS.gene99767.t1;Parent=MS.gene99767.t1
chr2.1 exon 19689793 19690302 19689793 ID=MS.gene99767.t1.exon3;Parent=MS.gene99767.t1
chr2.1 CDS 19689793 19690302 19689793 ID=cds.MS.gene99767.t1;Parent=MS.gene99767.t1
Gene Sequence

>MS.gene99767

ATGGCATTGATGGCAGCAAGCTCAGCAGCTGTTGTTAAACAAACTCCTTTCCTTGGTCAAAGGAAGGGTGCTGCCAACCCTCTTAGAGATGTTGTCGCCATGGGAACCTCAAGATTCACTATGGTATTTCCTCTTTTCCCTATTTTTTTAGTAAAAATTTCACTATATTTATAGGAATAAACATTCATTTTAGTCCTTAAATGTGTGATGCTACTAATTGGTCTAACTAACTTAGTGTGACCAATATTGTATCTAATAATTAATAAAGTATGATTTTGTCTCCCTCAAAAAAAAAGTATGATTTTGTCTAATGTGCACACAAGTAAAATTCACTTGCTTGCACCATGCACAAGTATGTTTTTTTATCATTGGATCAATAAGTAGCATCATATTTCATTCAATTTAATAGTGAGATTTATTGATCAAATTGTAAAACTTATGCATGATGCAAGATTTGTTTCGCACCATATAATTGGCCATAAAGCATATACTTTGTTAGTAATGTTATAGACTAAATTGACTCAAGTTAGACACATTCAAAAACTAAACTAACTAATGATAGACACGTTCGGGAGTAAAATGACTATAAAAACACGTTTAGATATGTTTTTATTGGTTATACATGCAATGACTAGCACATTTAAGTAGTGAAATAATTGTCTACTTGTATTTATATAGTGTTGCTTATGTGGCTGATACATGCATTGTGTTTGTGATTGTGAAGGGAAATGAATTGTGGTATGGACCAGACAGAGTGAAATATTTGGGGCCATTTTCAGCTCAGACTCCTTCATACTTAACTGGAGAATTCCCTGGTGATTATGGATGGGACACTGCTGGTTTATCTGCTGATCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAGGTTAGTTTTCATGTTTAAAAATGCTCCAAAACTATGGTTTTTTCTCATTCCATTCTTATGTTTTTTTTCTAAACATTTCAATTACCAAAAATTTTGTTAACATTCTAAAGAGTGAATAATTTATAGGGTTTAATATGTGATTCGTCCCTGCAAATAGGGCTCGCTTAAAATTTCGTCCCTGCAATCGCTAATCCTTTTTTTTTGCCCCTGCAAAGTTTAATCAGTTAAAAATTCGTCCTTTGACCCAGTTTAATCACTGCCACGTCAGCAAGGACGAAAATACCCCTGGCTTATTTTTTTTCCTTAAAAAAAAAATTCAAAATTTTGAAAATTCTTTTTTTAAATTTAAAAAAATCTGAAAAAATCATAAAAAATTTCGGAAAAAAATTTTAAAATTAAAACTGAAAAAACTGAAATTTTTCCGAGAAAAAATCGTAAAAAAAAATGGGGAAAAATCTGGAAAAAAAAGTTTTTTGAAGGAAAAAACAAAAAAAAATAAGCCAGGGGTATTTTCGTCCTTTCGCGTGCCCTTTTGGTCATTTGCTGACGTGGCAGTGATTAAATTGGGTCAAAGGACGAATTTTTAACTGATTAAATTTTGCAGGGGCAAAAAAAAAGGATTAGTGATTGGAGAGACGAAATTTTAAGCGACCCCTATTTGCAGGGACGAATCACATATTAAACCCTAATTTATATTAGTGACACCGATAAAGATATTAAGTTATGTTGAATTTTGAAGGTGATCCATGGAAGATGGGCTATGCTAGGAGCACTTGGATGCATCACACCTGAAGTACTTGAAAAATGGGTGAGAGTTGATTTCAAAGAACCAGTTTGGTTCAAAGCAGGATCGCAAATCTTCTCAGAAGGTGGTCTTGACTATTTAGGGAACCCAAACCTTGTTCATGCACAAAGCATCTTAGCAGTACTAGGTTTCCAAGTTGTTCTAATGGGTCTTGTCGAAGGGTTCCGCATCAACGGTCTTCCTGGTGTCGGAGAGGGCAACAACCTTTACCCCGGTGGCCAATACTTTGACCCTCTTGGTCTAGCCGACGATCCAGTTACTTTCGCCGAGCTTAAAGTGAAGGAAATCAAGAATGGAAGATTGGCTATGTTTTCGATGTTTGGTTTCTTTGTTCAAGCTATTGTCACTGGTAAAGGACCTTTGGAGAATCTTTTGGATCACATTGACAACCCTGTTGCCAATAATGCCTGGGTTTATGCCACCAAGTTTGTGCCTGGTTCTTAA

Protein sequence

>MS.gene99767.t1

MALMAASSAAVVKQTPFLGQRKGAANPLRDVVAMGTSRFTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNNLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHIDNPVANNAWVYATKFVPGS