Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023609.t1 | XP_003629838.2 | 99.1 | 229 | 2 | 0 | 1 | 229 | 1 | 229 | 8.90E-126 | 459.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023609.t1 | Q9H2W6 | 39.3 | 135 | 70 | 4 | 86 | 215 | 136 | 263 | 5.5e-15 | 82.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023609.t1 | G7L791 | 99.1 | 229 | 2 | 0 | 1 | 229 | 1 | 229 | 6.4e-126 | 459.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene82915 | MS.gene023609 | PPI |
| MS.gene066059 | MS.gene023609 | PPI |
| MS.gene055808 | MS.gene023609 | PPI |
| MS.gene026968 | MS.gene023609 | PPI |
| MS.gene21110 | MS.gene023609 | PPI |
| MS.gene005865 | MS.gene023609 | PPI |
| MS.gene31468 | MS.gene023609 | PPI |
| MS.gene005399 | MS.gene023609 | PPI |
| MS.gene036564 | MS.gene023609 | PPI |
| MS.gene20938 | MS.gene023609 | PPI |
| MS.gene028903 | MS.gene023609 | PPI |
| MS.gene043435 | MS.gene023609 | PPI |
| MS.gene34167 | MS.gene023609 | PPI |
| MS.gene001687 | MS.gene023609 | PPI |
| MS.gene21227 | MS.gene023609 | PPI |
| MS.gene21111 | MS.gene023609 | PPI |
| MS.gene035256 | MS.gene023609 | PPI |
| MS.gene60861 | MS.gene023609 | PPI |
| MS.gene60589 | MS.gene023609 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023609.t1 | MTR_8g087440 | 99.127 | 229 | 2 | 0 | 1 | 229 | 1 | 229 | 3.99e-171 | 470 |
| MS.gene023609.t1 | MTR_8g028485 | 96.507 | 229 | 8 | 0 | 1 | 229 | 1 | 229 | 4.38e-167 | 459 |
| MS.gene023609.t1 | MTR_7g117435 | 85.075 | 134 | 20 | 0 | 51 | 184 | 4 | 137 | 3.01e-77 | 229 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023609.t1 | AT1G14620 | 72.444 | 225 | 61 | 1 | 6 | 229 | 9 | 233 | 1.83e-122 | 347 |
| MS.gene023609.t1 | AT1G14620 | 71.910 | 178 | 49 | 1 | 6 | 182 | 9 | 186 | 7.36e-92 | 269 |
Find 44 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTCTTTGGTGATGCTTA+TGG | 0.132920 | 4.4:-13293323 | MS.gene023609:CDS |
| ATAAACATTAGGGTCAATTT+TGG | 0.146402 | 4.4:+13295491 | None:intergenic |
| TTCTCTTTGGTGATGCTTAT+GGG | 0.201628 | 4.4:-13293322 | MS.gene023609:CDS |
| CTTTAGGCTGAACAACAATA+TGG | 0.250918 | 4.4:+13292860 | None:intergenic |
| GATCCTGTCTGCTCTTCTTT+AGG | 0.268390 | 4.4:+13292844 | None:intergenic |
| TCTTGAAAAGCATAAACATT+AGG | 0.296449 | 4.4:+13295480 | None:intergenic |
| AGACTTTACCTTCTTCTCTT+TGG | 0.302982 | 4.4:-13293335 | MS.gene023609:CDS |
| CAGTACCAGCTCTGAGAAAA+TGG | 0.316816 | 4.4:-13295553 | MS.gene023609:CDS |
| CTTGAAAAGCATAAACATTA+GGG | 0.335207 | 4.4:+13295481 | None:intergenic |
| TCTGCCTTGAAATCAGTCTT+AGG | 0.355740 | 4.4:-13292925 | MS.gene023609:CDS |
| GCTTCGGTGATTCGCGGTGC+TGG | 0.381981 | 4.4:+13294099 | None:intergenic |
| ATCTCCTAAGACTGATTTCA+AGG | 0.411980 | 4.4:+13292921 | None:intergenic |
| GCAAATGTGAGGACTTTGTT+TGG | 0.413949 | 4.4:-13292521 | MS.gene023609:CDS |
| CAAATGTGAGGACTTTGTTT+GGG | 0.420934 | 4.4:-13292520 | MS.gene023609:CDS |
| GGTGACTAAGGATGAATTGA+TGG | 0.429874 | 4.4:-13292499 | MS.gene023609:CDS |
| CAGGATGAAGATGATGTCAT+TGG | 0.454517 | 4.4:-13295604 | None:intergenic |
| CCTCTTTAGGTCACTACAAA+GGG | 0.467960 | 4.4:-13293369 | MS.gene023609:intron |
| GGACTTTGTTTGGGTGACTA+AGG | 0.476258 | 4.4:-13292511 | MS.gene023609:CDS |
| TTTCACTGGCTAGGTTTCGA+TGG | 0.485464 | 4.4:-13294383 | MS.gene023609:intron |
| TTTAGGCTGAACAACAATAT+GGG | 0.490540 | 4.4:+13292861 | None:intergenic |
| TGAAGATGATGTCATTGGTT+CGG | 0.499816 | 4.4:-13295599 | MS.gene023609:CDS |
| TCTCTTTGGTGATGCTTATG+GGG | 0.506698 | 4.4:-13293321 | MS.gene023609:CDS |
| AAGCATCACCAAAGAGAAGA+AGG | 0.518933 | 4.4:+13293327 | None:intergenic |
| GATCTGTCTAGAAATTCATC+AGG | 0.521123 | 4.4:+13294336 | None:intergenic |
| TGCCACACAGGGTTTCCACT+TGG | 0.530893 | 4.4:+13293296 | None:intergenic |
| GCCTCTTTAGGTCACTACAA+AGG | 0.536519 | 4.4:-13293370 | MS.gene023609:intron |
| CGGCCACTCTTGATGAGGCG+AGG | 0.556081 | 4.4:-13295579 | MS.gene023609:CDS |
| CAGCCTAAAGAAGAGCAGAC+AGG | 0.565138 | 4.4:-13292847 | MS.gene023609:CDS |
| CACTGGCTAGGTTTCGATGG+CGG | 0.565281 | 4.4:-13294380 | MS.gene023609:intron |
| TGGTTCGGCCACTCTTGATG+AGG | 0.568234 | 4.4:-13295584 | MS.gene023609:CDS |
| TTGTCTGCTTCGGTGATTCG+CGG | 0.572285 | 4.4:+13294093 | None:intergenic |
| ATCAGAGGATACCATGCGTA+AGG | 0.591397 | 4.4:-13293252 | MS.gene023609:intron |
| TTCTAGACAGATCCGATGCA+AGG | 0.596915 | 4.4:-13294326 | MS.gene023609:intron |
| TTTCTGGAAAATGCCACACA+GGG | 0.620152 | 4.4:+13293285 | None:intergenic |
| TGAACAACAATATGGGCCAT+CGG | 0.626927 | 4.4:+13292868 | None:intergenic |
| GCTGTTTGAGAGATTGCCTG+TGG | 0.631922 | 4.4:-13295520 | MS.gene023609:CDS |
| CAGACAAACAAAATGATCGA+AGG | 0.632787 | 4.4:-13294077 | MS.gene023609:intron |
| TAAGTACCCATACCTTGCAT+CGG | 0.633346 | 4.4:+13294314 | None:intergenic |
| AAGAATGTTCACCTTACGCA+TGG | 0.635771 | 4.4:+13293241 | None:intergenic |
| AATCCTCGCCTCATCAAGAG+TGG | 0.640945 | 4.4:+13295576 | None:intergenic |
| GTTCGACATTGGCAAATGTG+AGG | 0.661270 | 4.4:-13292532 | MS.gene023609:CDS |
| CTCCAAGTGGAAACCCTGTG+TGG | 0.674494 | 4.4:-13293298 | MS.gene023609:CDS |
| GATGCTTATGGGGCTCCAAG+TGG | 0.683285 | 4.4:-13293311 | MS.gene023609:CDS |
| CAATCTCTCAAACAGCACAG+AGG | 0.749554 | 4.4:+13295527 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTTATAACTAAATTTTTAT+GGG | - | chr4.4:13293642-13293661 | MS.gene023609:intron | 10.0% |
| !!! | TCTTTAAAAAAAATTATCAA+TGG | + | chr4.4:13294604-13294623 | None:intergenic | 10.0% |
| !!! | TGCAATTTTTTTTATAAAAA+AGG | + | chr4.4:13295094-13295113 | None:intergenic | 10.0% |
| !!! | TTTATAACTAAATTTTTATG+GGG | - | chr4.4:13293643-13293662 | MS.gene023609:intron | 10.0% |
| !!! | AGTATTTGTATTTTACAAAT+TGG | + | chr4.4:13293290-13293309 | None:intergenic | 15.0% |
| !!! | GGTTTATAACTAAATTTTTA+TGG | - | chr4.4:13293641-13293660 | MS.gene023609:intron | 15.0% |
| !!! | TTTCAATATGTTATTTCTAT+CGG | - | chr4.4:13295296-13295315 | MS.gene023609:intron | 15.0% |
| !! | AAATGTTTCATTTCAATTTC+TGG | - | chr4.4:13294040-13294059 | MS.gene023609:intron | 20.0% |
| !! | AGAACAAGTTAATAATTCAT+TGG | + | chr4.4:13294145-13294164 | None:intergenic | 20.0% |
| !!! | ATCAAAAGTAAAATGGATTT+CGG | - | chr4.4:13292678-13292697 | MS.gene023609:intron | 20.0% |
| !!! | CTTTCAAATACATATTTTGT+CGG | - | chr4.4:13295151-13295170 | MS.gene023609:intron | 20.0% |
| !!! | TAAAAGCATCAAAAGTAAAA+TGG | - | chr4.4:13292671-13292690 | MS.gene023609:intron | 20.0% |
| !!! | TCTTTTCTTCTTTTTTTTGA+AGG | - | chr4.4:13294208-13294227 | MS.gene023609:intron | 20.0% |
| !!! | TGTCCACATTTTTTAAAAAA+GGG | - | chr4.4:13293368-13293387 | MS.gene023609:intron | 20.0% |
| !!! | TGTTTAAGTTATGAAAGAAA+TGG | - | chr4.4:13293838-13293857 | MS.gene023609:intron | 20.0% |
| !!! | TTACCCTTTTTTAAAAAATG+TGG | + | chr4.4:13293374-13293393 | None:intergenic | 20.0% |
| !!! | TTCTATCATAAACCATATTT+TGG | + | chr4.4:13293177-13293196 | None:intergenic | 20.0% |
| !!! | TTGTCCACATTTTTTAAAAA+AGG | - | chr4.4:13293367-13293386 | MS.gene023609:intron | 20.0% |
| ! | AACATTGATCAAAGTGATTA+TGG | - | chr4.4:13292771-13292790 | MS.gene023609:intron | 25.0% |
| ! | AAGATATAGGAAATAAGAAG+GGG | + | chr4.4:13294844-13294863 | None:intergenic | 25.0% |
| ! | ACACGATCAAAAAACAATAA+AGG | + | chr4.4:13294323-13294342 | None:intergenic | 25.0% |
| ! | AGAAAAAGATGGAAAAAATG+AGG | - | chr4.4:13293466-13293485 | MS.gene023609:intron | 25.0% |
| ! | AGAATTTCTGACAAAAGATT+TGG | + | chr4.4:13295466-13295485 | None:intergenic | 25.0% |
| ! | AGATTGTCATCAGATATTTA+AGG | - | chr4.4:13294383-13294402 | MS.gene023609:intron | 25.0% |
| ! | AGTTTGTCAAAAGAAAAAGA+TGG | - | chr4.4:13293455-13293474 | MS.gene023609:intron | 25.0% |
| ! | ATGAAAATTGTTTACTTTCC+AGG | - | chr4.4:13293897-13293916 | MS.gene023609:intron | 25.0% |
| ! | ATTATCAATGGTAAAGCAAA+TGG | + | chr4.4:13294592-13294611 | None:intergenic | 25.0% |
| ! | GAAGATATAGGAAATAAGAA+GGG | + | chr4.4:13294845-13294864 | None:intergenic | 25.0% |
| ! | GAATTTCTGACAAAAGATTT+GGG | + | chr4.4:13295465-13295484 | None:intergenic | 25.0% |
| ! | TAATGAATTCGACCAAAATA+TGG | - | chr4.4:13293162-13293181 | MS.gene023609:intron | 25.0% |
| ! | TCTATTATTATCTAAGAGAC+AGG | + | chr4.4:13294521-13294540 | None:intergenic | 25.0% |
| ! | TGAAAATTGTTTACTTTCCA+GGG | - | chr4.4:13293898-13293917 | MS.gene023609:intron | 25.0% |
| ! | TGAGAAATATATCAATGTGA+GGG | - | chr4.4:13294476-13294495 | MS.gene023609:intron | 25.0% |
| ! | TGCTGTTAATATTACATAGT+TGG | - | chr4.4:13293512-13293531 | MS.gene023609:intron | 25.0% |
| ! | TTTGTCTATTCAGTGAAATT+TGG | - | chr4.4:13293343-13293362 | MS.gene023609:CDS | 25.0% |
| !! | AGAAAAAGTATATGAATCAG+AGG | - | chr4.4:13294782-13294801 | MS.gene023609:intron | 25.0% |
| !! | ATAAACATTAGGGTCAATTT+TGG | + | chr4.4:13292561-13292580 | None:intergenic | 25.0% |
| !! | CTTGAAAAGCATAAACATTA+GGG | + | chr4.4:13292571-13292590 | None:intergenic | 25.0% |
| !! | TAAACATTAGGGTCAATTTT+GGG | + | chr4.4:13292560-13292579 | None:intergenic | 25.0% |
| !! | TCTTGAAAAGCATAAACATT+AGG | + | chr4.4:13292572-13292591 | None:intergenic | 25.0% |
| !!! | ATAAGTCAGAAGTATTGAAA+AGG | + | chr4.4:13295400-13295419 | None:intergenic | 25.0% |
| !!! | ATCTTTTAAGGTATGTTTGT+AGG | - | chr4.4:13295231-13295250 | MS.gene023609:intron | 25.0% |
| !!! | GTGTTTTAGCTTTGAAATAT+TGG | - | chr4.4:13294339-13294358 | MS.gene023609:CDS | 25.0% |
| !!! | TCTGATTCATATACTTTTTC+TGG | + | chr4.4:13294783-13294802 | None:intergenic | 25.0% |
| !!! | TTCTTCTTTTTTTTGAAGGA+AGG | - | chr4.4:13294212-13294231 | MS.gene023609:intron | 25.0% |
| !!! | TTTCTTTCTCTTTTCTAAGA+TGG | - | chr4.4:13293424-13293443 | MS.gene023609:intron | 25.0% |
| !!! | TTTTCTGAAAATGACTTTGT+AGG | - | chr4.4:13295331-13295350 | MS.gene023609:intron | 25.0% |
| AAAATAGACTTAGGTGGTTT+GGG | - | chr4.4:13293036-13293055 | MS.gene023609:intron | 30.0% | |
| AAAATTGTTTACTTTCCAGG+GGG | - | chr4.4:13293900-13293919 | MS.gene023609:intron | 30.0% | |
| AAATACCACACCAAAGAAAA+AGG | + | chr4.4:13294245-13294264 | None:intergenic | 30.0% | |
| AAATGATCAGTCTGCTAAAT+TGG | + | chr4.4:13294004-13294023 | None:intergenic | 30.0% | |
| ACTACAAATGTTCTTAAGCA+AGG | - | chr4.4:13294265-13294284 | MS.gene023609:intron | 30.0% | |
| AGAGACATGAAAACCTAATT+AGG | - | chr4.4:13294566-13294585 | MS.gene023609:intron | 30.0% | |
| ATGAAAATATTAGAGAGTCG+AGG | - | chr4.4:13292986-13293005 | MS.gene023609:intron | 30.0% | |
| ATTGATCAAAGTGATTATGG+TGG | - | chr4.4:13292774-13292793 | MS.gene023609:intron | 30.0% | |
| ATTTCACTGAATAGACAAAC+TGG | + | chr4.4:13293342-13293361 | None:intergenic | 30.0% | |
| CACAACCAAACAAATTGAAA+AGG | + | chr4.4:13295357-13295376 | None:intergenic | 30.0% | |
| CATGATAGTAGATGAAAAGA+AGG | + | chr4.4:13293880-13293899 | None:intergenic | 30.0% | |
| CTATAGATATATCATCGCTA+AGG | + | chr4.4:13294887-13294906 | None:intergenic | 30.0% | |
| CTGAGAAATATATCAATGTG+AGG | - | chr4.4:13294475-13294494 | MS.gene023609:intron | 30.0% | |
| GAAAATTGTTTACTTTCCAG+GGG | - | chr4.4:13293899-13293918 | MS.gene023609:intron | 30.0% | |
| GGAAGATATAGGAAATAAGA+AGG | + | chr4.4:13294846-13294865 | None:intergenic | 30.0% | |
| GTTGTTGCTAATACAATTTC+AGG | - | chr4.4:13293255-13293274 | MS.gene023609:CDS | 30.0% | |
| TGTTGTACTTACTGATATTG+TGG | - | chr4.4:13293610-13293629 | MS.gene023609:intron | 30.0% | |
| TTAACAACACTGGAAGATAT+AGG | + | chr4.4:13294857-13294876 | None:intergenic | 30.0% | |
| TTGCAGATTACAGAAAATAG+TGG | + | chr4.4:13295039-13295058 | None:intergenic | 30.0% | |
| TTTAGGCTGAACAACAATAT+GGG | + | chr4.4:13295191-13295210 | None:intergenic | 30.0% | |
| ! | AAATTTTTATGGGGTTTCAC+TGG | - | chr4.4:13293652-13293671 | MS.gene023609:intron | 30.0% |
| ! | AGGAAAATGTCCTTTTTCTT+TGG | - | chr4.4:13294232-13294251 | MS.gene023609:intron | 30.0% |
| ! | AGTAAAATGGATTTCGGTTT+CGG | - | chr4.4:13292684-13292703 | MS.gene023609:intron | 30.0% |
| ! | TAATTTTACTATGCTCTGCT+TGG | - | chr4.4:13292633-13292652 | MS.gene023609:intron | 30.0% |
| !! | ATCATTTTGTTTGTCTGCTT+CGG | + | chr4.4:13293969-13293988 | None:intergenic | 30.0% |
| !! | TTATTTCTATCGGTATGTGT+CGG | - | chr4.4:13295306-13295325 | MS.gene023609:intron | 30.0% |
| !!! | AGTATTGAAAAGGCTAGTTT+TGG | + | chr4.4:13295390-13295409 | None:intergenic | 30.0% |
| AAATATATCAATGTGAGGGC+AGG | - | chr4.4:13294480-13294499 | MS.gene023609:intron | 35.0% | |
| AACTTCAATCTACTGTTGGA+AGG | - | chr4.4:13295265-13295284 | MS.gene023609:intron | 35.0% | |
| AGACTTTACCTTCTTCTCTT+TGG | - | chr4.4:13294714-13294733 | MS.gene023609:intron | 35.0% | |
| AGTATGGAGAGTAGATCAAA+TGG | - | chr4.4:13293088-13293107 | MS.gene023609:intron | 35.0% | |
| AGTGATTATGGTGGTTGAAA+TGG | - | chr4.4:13292783-13292802 | MS.gene023609:intron | 35.0% | |
| ATGGGTACTTAAGTAAGAGT+TGG | - | chr4.4:13293747-13293766 | MS.gene023609:intron | 35.0% | |
| CAGACAAACAAAATGATCGA+AGG | - | chr4.4:13293972-13293991 | MS.gene023609:intron | 35.0% | |
| CTCCATACTACAGAATCTAT+AGG | + | chr4.4:13293077-13293096 | None:intergenic | 35.0% | |
| CTCTTATTACTTGCCTCTTT+AGG | - | chr4.4:13294667-13294686 | MS.gene023609:intron | 35.0% | |
| CTGACAAAAGATTTGGGTAA+AGG | + | chr4.4:13295459-13295478 | None:intergenic | 35.0% | |
| CTTTAGGCTGAACAACAATA+TGG | + | chr4.4:13295192-13295211 | None:intergenic | 35.0% | |
| GAAAATAGACTTAGGTGGTT+TGG | - | chr4.4:13293035-13293054 | MS.gene023609:intron | 35.0% | |
| GACCTATAGATTCTGTAGTA+TGG | - | chr4.4:13293072-13293091 | MS.gene023609:intron | 35.0% | |
| GATCTGTCTAGAAATTCATC+AGG | + | chr4.4:13293716-13293735 | None:intergenic | 35.0% | |
| GCTAAAAACAAGTTCGACAT+TGG | - | chr4.4:13295506-13295525 | MS.gene023609:CDS | 35.0% | |
| GTAAAGCAAATGGCCTAATT+AGG | + | chr4.4:13294582-13294601 | None:intergenic | 35.0% | |
| GTAAGGTGAACATTCTTATG+TGG | - | chr4.4:13294814-13294833 | MS.gene023609:intron | 35.0% | |
| GTCCTCAAAATTGTGAGTAT+TGG | + | chr4.4:13293320-13293339 | None:intergenic | 35.0% | |
| GTGGTAAGACTATATGAGAT+AGG | - | chr4.4:13292956-13292975 | MS.gene023609:intron | 35.0% | |
| TATTATCTAAGAGACAGGAG+AGG | + | chr4.4:13294516-13294535 | None:intergenic | 35.0% | |
| TCGTCATATAGTTGCTATAG+TGG | - | chr4.4:13294970-13294989 | MS.gene023609:intron | 35.0% | |
| ! | AATGTCCTTTTTCTTTGGTG+TGG | - | chr4.4:13294237-13294256 | MS.gene023609:intron | 35.0% |
| ! | ACTTCTGACTTATTTCTCTG+TGG | - | chr4.4:13295407-13295426 | MS.gene023609:intron | 35.0% |
| ! | AGGTTAATGTCTGAAACACA+AGG | - | chr4.4:13293486-13293505 | MS.gene023609:intron | 35.0% |
| ! | ATCTCCTAAGACTGATTTCA+AGG | + | chr4.4:13295131-13295150 | None:intergenic | 35.0% |
| ! | CAAATGTGAGGACTTTGTTT+GGG | - | chr4.4:13295529-13295548 | MS.gene023609:CDS | 35.0% |
| ! | GACAGGATCAACATCTTTTA+AGG | - | chr4.4:13295219-13295238 | MS.gene023609:intron | 35.0% |
| ! | GACCAATACTCACAATTTTG+AGG | - | chr4.4:13293315-13293334 | MS.gene023609:CDS | 35.0% |
| ! | GGTTAATGTCTGAAACACAA+GGG | - | chr4.4:13293487-13293506 | MS.gene023609:intron | 35.0% |
| ! | GTAAGACTGGCAATTTTGTA+TGG | - | chr4.4:13292856-13292875 | MS.gene023609:CDS | 35.0% |
| ! | TGAAGATGATGTCATTGGTT+CGG | - | chr4.4:13292450-13292469 | MS.gene023609:CDS | 35.0% |
| ! | TTTAAAAACTCAGCTTGCTC+AGG | + | chr4.4:13295584-13295603 | None:intergenic | 35.0% |
| ! | TTTGTATGGAACAGAGTGTT+GGG | - | chr4.4:13292870-13292889 | MS.gene023609:CDS | 35.0% |
| ! | TTTTGTATGGAACAGAGTGT+TGG | - | chr4.4:13292869-13292888 | MS.gene023609:CDS | 35.0% |
| !! | AGATGGTGGAAAATAGACTT+AGG | - | chr4.4:13293027-13293046 | MS.gene023609:intron | 35.0% |
| !! | CATAGTTGGTAATTGTGCTA+TGG | - | chr4.4:13293526-13293545 | MS.gene023609:intron | 35.0% |
| !! | GTAGGCCTTTTCAATTTGTT+TGG | - | chr4.4:13295349-13295368 | MS.gene023609:intron | 35.0% |
| !! | TCAATTTTGGGAATAACCAC+AGG | + | chr4.4:13292548-13292567 | None:intergenic | 35.0% |
| !! | TTCTCTTTGGTGATGCTTAT+GGG | - | chr4.4:13294727-13294746 | MS.gene023609:intron | 35.0% |
| !!! | CGTTGATTTTATTCTCGTGT+TGG | + | chr4.4:13292906-13292925 | None:intergenic | 35.0% |
| AAATCAACGTAGCAGAGATG+AGG | - | chr4.4:13292917-13292936 | MS.gene023609:CDS | 40.0% | |
| AAGAATGTTCACCTTACGCA+TGG | + | chr4.4:13294811-13294830 | None:intergenic | 40.0% | |
| AAGACTGAACATGCACTAAC+AGG | + | chr4.4:13294419-13294438 | None:intergenic | 40.0% | |
| AAGCATCACCAAAGAGAAGA+AGG | + | chr4.4:13294725-13294744 | None:intergenic | 40.0% | |
| ACCTATAGCAGAAAAGATGG+TGG | - | chr4.4:13293013-13293032 | MS.gene023609:intron | 40.0% | |
| ACTGATATTGTGGCTGTTCT+TGG | - | chr4.4:13293620-13293639 | MS.gene023609:intron | 40.0% | |
| ACTTGAAGGGGGAATTCTAT+CGG | - | chr4.4:13292827-13292846 | MS.gene023609:intron | 40.0% | |
| AGCACCTATAGCAGAAAAGA+TGG | - | chr4.4:13293010-13293029 | MS.gene023609:intron | 40.0% | |
| ATATTGTCCTCGTCTTCCTT+TGG | - | chr4.4:13294166-13294185 | MS.gene023609:intron | 40.0% | |
| ATGGAGAGTAGATCAAATGG+AGG | - | chr4.4:13293091-13293110 | MS.gene023609:intron | 40.0% | |
| CCTATAGCACTATTGCATAG+CGG | - | chr4.4:13295001-13295020 | MS.gene023609:intron | 40.0% | |
| CCTCTTTAGGTCACTACAAA+GGG | - | chr4.4:13294680-13294699 | MS.gene023609:intron | 40.0% | |
| CTTCAGAGATAATTGCTGTG+TGG | - | chr4.4:13294635-13294654 | MS.gene023609:intron | 40.0% | |
| GCAAATGTGAGGACTTTGTT+TGG | - | chr4.4:13295528-13295547 | MS.gene023609:CDS | 40.0% | |
| GCGTAACTTCAATCTACTGT+TGG | - | chr4.4:13295261-13295280 | MS.gene023609:intron | 40.0% | |
| GGTGACTAAGGATGAATTGA+TGG | - | chr4.4:13295550-13295569 | MS.gene023609:CDS | 40.0% | |
| TAAGTACCCATACCTTGCAT+CGG | + | chr4.4:13293738-13293757 | None:intergenic | 40.0% | |
| TCTGCCTTGAAATCAGTCTT+AGG | - | chr4.4:13295124-13295143 | MS.gene023609:intron | 40.0% | |
| TGAACAACAATATGGGCCAT+CGG | + | chr4.4:13295184-13295203 | None:intergenic | 40.0% | |
| TGGTGGAAAATAGACTTAGG+TGG | - | chr4.4:13293030-13293049 | MS.gene023609:intron | 40.0% | |
| ! | AGGCTGCTATTTAACAACAC+TGG | + | chr4.4:13294867-13294886 | None:intergenic | 40.0% |
| ! | TCCACCATCTTTTCTGCTAT+AGG | + | chr4.4:13293017-13293036 | None:intergenic | 40.0% |
| ! | TTTCTGGAAAATGCCACACA+GGG | + | chr4.4:13294767-13294786 | None:intergenic | 40.0% |
| !! | CTTCTCTTTGGTGATGCTTA+TGG | - | chr4.4:13294726-13294745 | MS.gene023609:intron | 40.0% |
| !! | TCTCTTTGGTGATGCTTATG+GGG | - | chr4.4:13294728-13294747 | MS.gene023609:intron | 40.0% |
| !! | TTTTCTGGAAAATGCCACAC+AGG | + | chr4.4:13294768-13294787 | None:intergenic | 40.0% |
| ACAGATCCGATGCAAGGTAT+GGG | - | chr4.4:13293729-13293748 | MS.gene023609:intron | 45.0% | |
| ATCAGAGGATACCATGCGTA+AGG | - | chr4.4:13294797-13294816 | MS.gene023609:intron | 45.0% | |
| ATGACATTTGCTCGCTCCAA+AGG | + | chr4.4:13294185-13294204 | None:intergenic | 45.0% | |
| CAATCTCTCAAACAGCACAG+AGG | + | chr4.4:13292525-13292544 | None:intergenic | 45.0% | |
| CCCTTTGTAGTGACCTAAAG+AGG | + | chr4.4:13294683-13294702 | None:intergenic | 45.0% | |
| CCGCTATGCAATAGTGCTAT+AGG | + | chr4.4:13295004-13295023 | None:intergenic | 45.0% | |
| CTATCGGACAGTTGTAAGAC+TGG | - | chr4.4:13292843-13292862 | MS.gene023609:CDS | 45.0% | |
| GATCCTGTCTGCTCTTCTTT+AGG | + | chr4.4:13295208-13295227 | None:intergenic | 45.0% | |
| GCCTCTTTAGGTCACTACAA+AGG | - | chr4.4:13294679-13294698 | MS.gene023609:intron | 45.0% | |
| GTTCGACATTGGCAAATGTG+AGG | - | chr4.4:13295517-13295536 | MS.gene023609:CDS | 45.0% | |
| GTTGAAATGGAGATGAGGCT+CGG | - | chr4.4:13292796-13292815 | MS.gene023609:intron | 45.0% | |
| TATCAATGTGAGGGCAGGAT+AGG | - | chr4.4:13294485-13294504 | MS.gene023609:intron | 45.0% | |
| TCTAAGAGACAGGAGAGGAT+TGG | + | chr4.4:13294511-13294530 | None:intergenic | 45.0% | |
| TGGTGGTTGAAATGGAGATG+AGG | - | chr4.4:13292791-13292810 | MS.gene023609:intron | 45.0% | |
| TGTTTACTTTCCAGGGGGAA+AGG | - | chr4.4:13293905-13293924 | MS.gene023609:intron | 45.0% | |
| TTCTAGACAGATCCGATGCA+AGG | - | chr4.4:13293723-13293742 | MS.gene023609:intron | 45.0% | |
| TTGAAATGGAGATGAGGCTC+GGG | - | chr4.4:13292797-13292816 | MS.gene023609:intron | 45.0% | |
| ! | AAGCCTTTTCCAACTAGGTG+GGG | + | chr4.4:13293231-13293250 | None:intergenic | 45.0% |
| ! | CAACCAAGCCTTTTCCAACT+AGG | + | chr4.4:13293236-13293255 | None:intergenic | 45.0% |
| ! | CAAGCCTTTTCCAACTAGGT+GGG | + | chr4.4:13293232-13293251 | None:intergenic | 45.0% |
| ! | CTCGGGTGACTTAACTTGAA+GGG | - | chr4.4:13292814-13292833 | MS.gene023609:intron | 45.0% |
| ! | GGACTTTGTTTGGGTGACTA+AGG | - | chr4.4:13295538-13295557 | MS.gene023609:CDS | 45.0% |
| ! | TCGGGTGACTTAACTTGAAG+GGG | - | chr4.4:13292815-13292834 | MS.gene023609:intron | 45.0% |
| ! | TTTATGGGGTTTCACTGGCT+AGG | - | chr4.4:13293657-13293676 | MS.gene023609:intron | 45.0% |
| ! | TTTCACTGGCTAGGTTTCGA+TGG | - | chr4.4:13293666-13293685 | MS.gene023609:intron | 45.0% |
| ! | TTTTGTCGGAAATGCTCCGA+TGG | - | chr4.4:13295165-13295184 | MS.gene023609:intron | 45.0% |
| !! | CAGTACCAGCTCTGAGAAAA+TGG | - | chr4.4:13292496-13292515 | MS.gene023609:CDS | 45.0% |
| !! | GAGGGCATTTAGGAAAGACT+TGG | - | chr4.4:13293135-13293154 | MS.gene023609:intron | 45.0% |
| AATCCTCGCCTCATCAAGAG+TGG | + | chr4.4:13292476-13292495 | None:intergenic | 50.0% | |
| AGTCAGATCGCTAGAGGTAG+AGG | - | chr4.4:13293116-13293135 | MS.gene023609:intron | 50.0% | |
| CAGAGATGAGGATGTTGCGT+TGG | - | chr4.4:13292929-13292948 | MS.gene023609:CDS | 50.0% | |
| CAGCCTAAAGAAGAGCAGAC+AGG | - | chr4.4:13295202-13295221 | MS.gene023609:intron | 50.0% | |
| CCACCTAGTTGGAAAAGGCT+TGG | - | chr4.4:13293230-13293249 | MS.gene023609:intron | 50.0% | |
| CTGATAATCACCTTTCCCCC+TGG | + | chr4.4:13293918-13293937 | None:intergenic | 50.0% | |
| GACAGATCCGATGCAAGGTA+TGG | - | chr4.4:13293728-13293747 | MS.gene023609:intron | 50.0% | |
| GAGGATAGTCAGATCGCTAG+AGG | - | chr4.4:13293110-13293129 | MS.gene023609:intron | 50.0% | |
| GCTGTTTGAGAGATTGCCTG+TGG | - | chr4.4:13292529-13292548 | MS.gene023609:CDS | 50.0% | |
| GTCAGATCGCTAGAGGTAGA+GGG | - | chr4.4:13293117-13293136 | MS.gene023609:intron | 50.0% | |
| TTGTCTGCTTCGGTGATTCG+CGG | + | chr4.4:13293959-13293978 | None:intergenic | 50.0% | |
| ! | CCAAGCCTTTTCCAACTAGG+TGG | + | chr4.4:13293233-13293252 | None:intergenic | 50.0% |
| ! | CGGGTGACTTAACTTGAAGG+GGG | - | chr4.4:13292816-13292835 | MS.gene023609:intron | 50.0% |
| ! | CTTTTCCAACTAGGTGGGGT+CGG | + | chr4.4:13293227-13293246 | None:intergenic | 50.0% |
| ! | GCTCGGGTGACTTAACTTGA+AGG | - | chr4.4:13292813-13292832 | MS.gene023609:intron | 50.0% |
| ! | GGCAACCATTTTCTCAGAGC+TGG | + | chr4.4:13292504-13292523 | None:intergenic | 50.0% |
| !! | GCTAGAGGTAGAGGGCATTT+AGG | - | chr4.4:13293125-13293144 | MS.gene023609:intron | 50.0% |
| !! | GTATGGAACAGAGTGTTGGG+CGG | - | chr4.4:13292873-13292892 | MS.gene023609:CDS | 50.0% |
| CGACCCCACCTAGTTGGAAA+AGG | - | chr4.4:13293225-13293244 | MS.gene023609:intron | 55.0% | |
| CTCCAAGTGGAAACCCTGTG+TGG | - | chr4.4:13294751-13294770 | MS.gene023609:intron | 55.0% | |
| GATGCTTATGGGGCTCCAAG+TGG | - | chr4.4:13294738-13294757 | MS.gene023609:intron | 55.0% | |
| TGCCACACAGGGTTTCCACT+TGG | + | chr4.4:13294756-13294775 | None:intergenic | 55.0% | |
| ! | AGGATGTTGCGTTGGTCGTG+TGG | - | chr4.4:13292937-13292956 | MS.gene023609:CDS | 55.0% |
| ! | CACTGGCTAGGTTTCGATGG+CGG | - | chr4.4:13293669-13293688 | MS.gene023609:intron | 55.0% |
| ! | TGGTTCGGCCACTCTTGATG+AGG | - | chr4.4:13292465-13292484 | MS.gene023609:CDS | 55.0% |
| ACTAGGTGGGGTCGGCTACA+TGG | + | chr4.4:13293219-13293238 | None:intergenic | 60.0% | |
| GCTCGCTCCAAAGGAAGACG+AGG | + | chr4.4:13294176-13294195 | None:intergenic | 60.0% | |
| TGTAGCCGACCCCACCTAGT+TGG | - | chr4.4:13293219-13293238 | MS.gene023609:intron | 60.0% | |
| CGGCCACTCTTGATGAGGCG+AGG | - | chr4.4:13292470-13292489 | MS.gene023609:CDS | 65.0% | |
| GCTTCGGTGATTCGCGGTGC+TGG | + | chr4.4:13293953-13293972 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 13292449 | 13295622 | 13292449 | ID=MS.gene023609 |
| chr4.4 | mRNA | 13292449 | 13295622 | 13292449 | ID=MS.gene023609.t1;Parent=MS.gene023609 |
| chr4.4 | exon | 13295474 | 13295622 | 13295474 | ID=MS.gene023609.t1.exon1;Parent=MS.gene023609.t1 |
| chr4.4 | CDS | 13295474 | 13295622 | 13295474 | ID=cds.MS.gene023609.t1;Parent=MS.gene023609.t1 |
| chr4.4 | exon | 13294327 | 13294392 | 13294327 | ID=MS.gene023609.t1.exon2;Parent=MS.gene023609.t1 |
| chr4.4 | CDS | 13294327 | 13294392 | 13294327 | ID=cds.MS.gene023609.t1;Parent=MS.gene023609.t1 |
| chr4.4 | exon | 13294078 | 13294152 | 13294078 | ID=MS.gene023609.t1.exon3;Parent=MS.gene023609.t1 |
| chr4.4 | CDS | 13294078 | 13294152 | 13294078 | ID=cds.MS.gene023609.t1;Parent=MS.gene023609.t1 |
| chr4.4 | exon | 13293253 | 13293382 | 13293253 | ID=MS.gene023609.t1.exon4;Parent=MS.gene023609.t1 |
| chr4.4 | CDS | 13293253 | 13293382 | 13293253 | ID=cds.MS.gene023609.t1;Parent=MS.gene023609.t1 |
| chr4.4 | exon | 13292831 | 13292956 | 13292831 | ID=MS.gene023609.t1.exon5;Parent=MS.gene023609.t1 |
| chr4.4 | CDS | 13292831 | 13292956 | 13292831 | ID=cds.MS.gene023609.t1;Parent=MS.gene023609.t1 |
| chr4.4 | exon | 13292449 | 13292592 | 13292449 | ID=MS.gene023609.t1.exon6;Parent=MS.gene023609.t1 |
| chr4.4 | CDS | 13292449 | 13292592 | 13292449 | ID=cds.MS.gene023609.t1;Parent=MS.gene023609.t1 |
| Gene Sequence |
| Protein sequence |
