AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene20938

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene20938.t1 MTR_1g031890 97.857 280 6 0 1 280 1 280 0.0 551
MS.gene20938.t1 MTR_1g085490 97.500 280 7 0 1 280 1 280 0.0 549
MS.gene20938.t1 MTR_1g031890 97.834 277 6 0 1 277 1 277 0.0 546
MS.gene20938.t1 MTR_4g118060 96.786 280 9 0 1 280 1 280 0.0 544
MS.gene20938.t1 MTR_1g031890 97.423 194 5 0 1 194 1 194 1.34e-136 384
MS.gene20938.t1 MTR_1g110750 31.977 172 102 7 74 233 78 246 9.32e-12 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene20938.t1 AT5G64670 73.646 277 56 5 1 268 1 269 1.89e-138 392
MS.gene20938.t1 AT3G25920 30.667 225 128 11 5 211 19 233 7.84e-13 67.4

Find 91 sgRNAs with CRISPR-Local

Find 195 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTCTAAAACCTTGAAAATT+TGG 0.097234 1.3:-60702135 None:intergenic
TTACAATAAGTTAGGCTTTC+GGG 0.235237 1.3:+60704290 MS.gene20938:CDS
CCCCAACTTTGAACCTTTCC+TGG 0.235844 1.3:-60702283 None:intergenic
ACCTGAAAAGTGAGGCTAAA+TGG 0.251841 1.3:-60702363 None:intergenic
GGAGGAGGTCTAGCTGCTTT+AGG 0.302384 1.3:-60704357 None:intergenic
CTCTAAAACCTTGAAAATTT+GGG 0.308415 1.3:-60702134 None:intergenic
AGCCGCTTCAACTGCTTCCT+TGG 0.345478 1.3:-60704244 None:intergenic
TGAAAATTTGGGTGAGCATT+GGG 0.346095 1.3:-60702123 None:intergenic
ATTACAATAAGTTAGGCTTT+CGG 0.353200 1.3:+60704289 MS.gene20938:CDS
TTGAACCTTTCCTGGCTCTC+TGG 0.363875 1.3:-60702275 None:intergenic
GTCACAAAGGCCAGAGAGCC+AGG 0.365783 1.3:+60702265 MS.gene20938:CDS
ACACAGGATGCAGGGGTACT+TGG 0.366534 1.3:+60703551 MS.gene20938:intron
GCCAGGAAAGGTTCAAAGTT+GGG 0.370354 1.3:+60702282 MS.gene20938:CDS
ATACATACCTCTAGATGAAT+TGG 0.374426 1.3:-60703632 None:intergenic
AAGGTGTATTACAATAAGTT+AGG 0.375769 1.3:+60704282 MS.gene20938:CDS
GGAGCTGCAAGGGATGAAAT+TGG 0.382447 1.3:-60702068 None:intergenic
CCTGAAAAGTGAGGCTAAAT+GGG 0.402843 1.3:-60702362 None:intergenic
ACAAGGAAAGGTCGTGGTAT+TGG 0.409504 1.3:+60702213 MS.gene20938:CDS
TTGAAAATTTGGGTGAGCAT+TGG 0.414339 1.3:-60702124 None:intergenic
TCCTACGGCGAAGAGGGGTT+TGG 0.422318 1.3:-60702317 None:intergenic
GGGTTCTTGAAACCACGTTT+AGG 0.422852 1.3:-60702342 None:intergenic
ATTGCAACATTTATCAATGC+TGG 0.438724 1.3:+60703401 MS.gene20938:CDS
AGGTAACAAGGGTCACTGTC+AGG 0.442200 1.3:+60704220 MS.gene20938:intron
ATTATCTCTCAGATCATTCA+AGG 0.446007 1.3:-60702172 None:intergenic
AAAGGTCGTGGTATTGGATC+TGG 0.457769 1.3:+60702219 MS.gene20938:CDS
TAAAGATGGAGTAAGATTGA+TGG 0.459426 1.3:+60703583 MS.gene20938:CDS
TCTGGAAAGGGAAAGACTGC+TGG 0.460358 1.3:+60702237 MS.gene20938:CDS
ACTCACAACAAATCCGTTCT+CGG 0.463672 1.3:+60702033 MS.gene20938:CDS
GGAATTGGCTTCTTCGGAGC+AGG 0.465181 1.3:-60704417 None:intergenic
AAAGGGAAAGACTGCTGGGA+GGG 0.483006 1.3:+60702242 MS.gene20938:CDS
CCTTTCTTCTCAAACCACTC+AGG 0.485963 1.3:-60704324 None:intergenic
AAAGATGGAGTAAGATTGAT+GGG 0.489075 1.3:+60703584 MS.gene20938:CDS
AGCCAGGAAAGGTTCAAAGT+TGG 0.492590 1.3:+60702281 MS.gene20938:CDS
CTTGGGAAGCAAATTAAAGA+TGG 0.493440 1.3:+60703569 MS.gene20938:CDS
ATTTAACTGAGCTGACCTAC+TGG 0.497431 1.3:-60704468 None:intergenic
AAGGATAAAGTTGATAGCAT+TGG 0.500169 1.3:+60704387 MS.gene20938:CDS
TATTACCATACACAGGATGC+AGG 0.500174 1.3:+60703542 MS.gene20938:intron
GAAGAAAGATGCTAAGAAGA+AGG 0.501124 1.3:+60701974 None:intergenic
CACAGGATGCAGGGGTACTT+GGG 0.501363 1.3:+60703552 MS.gene20938:intron
TAGACCTCCTCCAAAACAAA+AGG 0.503344 1.3:+60704368 MS.gene20938:CDS
GGCTGGTGGGTCCGTCAGAA+AGG 0.508668 1.3:+60704263 MS.gene20938:CDS
TAGGCATCCTACGGCGAAGA+GGG 0.511475 1.3:-60702323 None:intergenic
CTGGAAAGGGAAAGACTGCT+GGG 0.513550 1.3:+60702238 MS.gene20938:CDS
AAGGAAGCAGTTGAAGCGGC+TGG 0.517828 1.3:+60704246 MS.gene20938:CDS
CCTGAGTGGTTTGAGAAGAA+AGG 0.522455 1.3:+60704324 MS.gene20938:CDS
CCTCTAGATGAATTGGCCAT+TGG 0.524840 1.3:-60703625 None:intergenic
CGTGGTATTGGATCTGGAAA+GGG 0.539393 1.3:+60702225 MS.gene20938:CDS
AGGGATGAAATTGGATAGAC+GGG 0.542610 1.3:-60702059 None:intergenic
GGTTCAAAGTTGGGGTTCGA+AGG 0.550775 1.3:+60702291 MS.gene20938:CDS
AAGGGAAAGACTGCTGGGAG+GGG 0.550921 1.3:+60702243 MS.gene20938:CDS
GCTGACCTACTGGAAGATCC+TGG 0.552817 1.3:-60704458 None:intergenic
AAGGGATGAAATTGGATAGA+CGG 0.557057 1.3:-60702060 None:intergenic
GATAGACGGGTATCCGAGAA+CGG 0.557179 1.3:-60702046 None:intergenic
CCAGGAAAGGTTCAAAGTTG+GGG 0.558197 1.3:+60702283 MS.gene20938:CDS
TCGTGGTATTGGATCTGGAA+AGG 0.561440 1.3:+60702224 MS.gene20938:CDS
AAAGAGTGAGGGAGCTGCAA+GGG 0.562238 1.3:-60702078 None:intergenic
AAGGGTCACTGTCAGGGCCA+AGG 0.567491 1.3:+60704227 MS.gene20938:CDS
GGAGTAAGATTGATGGGGCG+TGG 0.570786 1.3:+60703590 MS.gene20938:CDS
GATCACAATGAAAACACTCA+AGG 0.573417 1.3:+60703445 MS.gene20938:CDS
TATTGAGTTTACAGGTAACA+AGG 0.577340 1.3:+60704208 MS.gene20938:intron
GAAGCAGTTGAAGCGGCTGG+TGG 0.577528 1.3:+60704249 MS.gene20938:CDS
GGCCAAGGAAGCAGTTGAAG+CGG 0.578446 1.3:+60704242 MS.gene20938:CDS
AAGCAGTTGAAGCGGCTGGT+GGG 0.580431 1.3:+60704250 MS.gene20938:CDS
ATTGTAATACACCTTTCTGA+CGG 0.584521 1.3:-60704274 None:intergenic
GGTAACAAGGGTCACTGTCA+GGG 0.585974 1.3:+60704221 MS.gene20938:intron
CGAAAACAGAAGACAAGGAA+AGG 0.589508 1.3:+60702201 MS.gene20938:CDS
TCAAAGTTGGGGTTCGAAGG+AGG 0.591062 1.3:+60702294 MS.gene20938:CDS
ATTACCATACACAGGATGCA+GGG 0.600741 1.3:+60703543 MS.gene20938:intron
AAAGGCCAGAGAGCCAGGAA+AGG 0.600747 1.3:+60702270 MS.gene20938:CDS
CAGAAGACAAGGAAAGGTCG+TGG 0.605789 1.3:+60702207 MS.gene20938:CDS
AGGCATCCTACGGCGAAGAG+GGG 0.607244 1.3:-60702322 None:intergenic
CCAATGGCCAATTCATCTAG+AGG 0.608787 1.3:+60703625 MS.gene20938:CDS
GCACGAACGTTGAAAGAGTG+AGG 0.615232 1.3:-60702090 None:intergenic
TTAGGCATCCTACGGCGAAG+AGG 0.618508 1.3:-60702324 None:intergenic
GAAAGAGTGAGGGAGCTGCA+AGG 0.621872 1.3:-60702079 None:intergenic
CGCCGTAGGATGCCTAAACG+TGG 0.624469 1.3:+60702330 MS.gene20938:CDS
AACCACGTTTAGGCATCCTA+CGG 0.626355 1.3:-60702332 None:intergenic
GTGGTTCTGAGAAGATCCAA+TGG 0.632368 1.3:+60703609 MS.gene20938:CDS
ATTGAGTTTACAGGTAACAA+GGG 0.639306 1.3:+60704209 MS.gene20938:intron
GAAAGGGAAAGACTGCTGGG+AGG 0.641614 1.3:+60702241 MS.gene20938:CDS
TTCCCCGAAAACAGAAGACA+AGG 0.642420 1.3:+60702196 MS.gene20938:CDS
GGGCACTGTTGAAGCCTGAG+TGG 0.644311 1.3:+60704310 MS.gene20938:CDS
GCCAAACCCCTCTTCGCCGT+AGG 0.645837 1.3:+60702316 MS.gene20938:CDS
CACGAACGTTGAAAGAGTGA+GGG 0.652354 1.3:-60702089 None:intergenic
GGAAGCCAGGATCTTCCAGT+AGG 0.653803 1.3:+60704453 MS.gene20938:CDS
ACTGCTGGGAGGGGTCACAA+AGG 0.661736 1.3:+60702252 MS.gene20938:CDS
AGAAGTATACCTGAAAAGTG+AGG 0.669464 1.3:-60702371 None:intergenic
ATAAAGTTGATAGCATTGGA+CGG 0.672998 1.3:+60704391 MS.gene20938:CDS
GTGAGCATTGGGATTAAATG+TGG 0.673885 1.3:-60702112 None:intergenic
TTACCATACACAGGATGCAG+GGG 0.679526 1.3:+60703544 MS.gene20938:intron
AAGATGGAGTAAGATTGATG+GGG 0.737220 1.3:+60703585 MS.gene20938:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAATTTTTAATAATATTCC+TGG - chr1.3:60702713-60702732 None:intergenic 10.0%
!! AACAAAAAAGATATATAAAC+AGG - chr1.3:60702398-60702417 None:intergenic 15.0%
!! GAGATAAATAAATGTAAAAT+TGG + chr1.3:60704102-60704121 MS.gene20938:intron 15.0%
!!! AAAGTATTTCTAAAGATTTA+AGG - chr1.3:60703717-60703736 None:intergenic 15.0%
!!! AAGATAAGATTTTTATTTCA+AGG + chr1.3:60702817-60702836 MS.gene20938:intron 15.0%
!!! ATTATAATTCTGAGATTTAT+GGG + chr1.3:60702562-60702581 MS.gene20938:intron 15.0%
!!! TATTATAATTCTGAGATTTA+TGG + chr1.3:60702561-60702580 MS.gene20938:intron 15.0%
!! AAATCTTCTGTAAACATATA+TGG + chr1.3:60702846-60702865 MS.gene20938:intron 20.0%
!! ATAATAAACAAAAGAATGAG+AGG - chr1.3:60703522-60703541 None:intergenic 20.0%
!! TAATAAACAAAAGAATGAGA+GGG - chr1.3:60703521-60703540 None:intergenic 20.0%
!! TGAACTCTAATAATATACTA+AGG - chr1.3:60702507-60702526 None:intergenic 20.0%
!! TTATAACTTATTGAGTTTAC+AGG + chr1.3:60704200-60704219 MS.gene20938:intron 20.0%
!! TTATTATTATTACCATACAC+AGG + chr1.3:60703535-60703554 MS.gene20938:intron 20.0%
!!! AAACAAATTCATTTTAAGTG+AGG - chr1.3:60703486-60703505 None:intergenic 20.0%
!!! TTTATTGTATTGACATTTGA+CGG + chr1.3:60702994-60703013 MS.gene20938:intron 20.0%
!!! TTTTCAATTCTAAACACTTA+AGG + chr1.3:60704130-60704149 MS.gene20938:intron 20.0%
! AAACTTTATAGGCATATAAG+AGG + chr1.3:60704173-60704192 MS.gene20938:intron 25.0%
! AACTTTATAGGCATATAAGA+GGG + chr1.3:60704174-60704193 MS.gene20938:intron 25.0%
! AAGGATAAAGAACAAAATGT+TGG + chr1.3:60703905-60703924 MS.gene20938:intron 25.0%
! AAGGTGTATTACAATAAGTT+AGG + chr1.3:60704282-60704301 MS.gene20938:CDS 25.0%
! AATGTCTAGATAAGTTTATG+TGG + chr1.3:60703213-60703232 MS.gene20938:intron 25.0%
! AATTGACATGTAGAAATAAG+AGG - chr1.3:60702908-60702927 None:intergenic 25.0%
! ATAATATGACTGATAGATTG+AGG - chr1.3:60703320-60703339 None:intergenic 25.0%
! ATTACAATAAGTTAGGCTTT+CGG + chr1.3:60704289-60704308 MS.gene20938:CDS 25.0%
! CTAAAGATTTAAGGATCAAA+AGG - chr1.3:60703708-60703727 None:intergenic 25.0%
! GAGTTCATTAGTTATAATTG+TGG + chr1.3:60702520-60702539 MS.gene20938:intron 25.0%
! TAAAATTTCTGTAGTGTCTA+AGG + chr1.3:60703886-60703905 MS.gene20938:intron 25.0%
! TAATAATATTCCTGGAGAAA+TGG - chr1.3:60702705-60702724 None:intergenic 25.0%
! TATACAGTCACAAACTTTAT+AGG + chr1.3:60704162-60704181 MS.gene20938:intron 25.0%
!!! CTAAGTAATAAGTGTTTTTG+AGG + chr1.3:60703670-60703689 MS.gene20938:intron 25.0%
!!! CTCTAAAACCTTGAAAATTT+GGG - chr1.3:60702137-60702156 None:intergenic 25.0%
!!! GTATGTATACTTTGATTTGA+AGG + chr1.3:60703647-60703666 MS.gene20938:intron 25.0%
!!! TCAACTTTATCCTTTTGTTT+TGG - chr1.3:60704381-60704400 None:intergenic 25.0%
!!! TTTTTAGTGCATATCATACT+TGG - chr1.3:60702932-60702951 None:intergenic 25.0%
AAAGATGGAGTAAGATTGAT+GGG + chr1.3:60703584-60703603 MS.gene20938:CDS 30.0%
ACTGATAGATTGAGGAATAA+AGG - chr1.3:60703312-60703331 None:intergenic 30.0%
ACTTTATAGGCATATAAGAG+GGG + chr1.3:60704175-60704194 MS.gene20938:intron 30.0%
ATACATACCTCTAGATGAAT+TGG - chr1.3:60703635-60703654 None:intergenic 30.0%
ATGTTGCCAATGTTAAAACA+TGG - chr1.3:60703856-60703875 None:intergenic 30.0%
ATTATCTCTCAGATCATTCA+AGG - chr1.3:60702175-60702194 None:intergenic 30.0%
ATTCTAAACACTTAAGGTGT+AGG + chr1.3:60704136-60704155 MS.gene20938:intron 30.0%
ATTCTTCTGTGTATTTAACC+GGG + chr1.3:60702429-60702448 MS.gene20938:intron 30.0%
ATTGAGTTTACAGGTAACAA+GGG + chr1.3:60704209-60704228 MS.gene20938:intron 30.0%
ATTGCAACATTTATCAATGC+TGG + chr1.3:60703401-60703420 MS.gene20938:CDS 30.0%
ATTGTAATACACCTTTCTGA+CGG - chr1.3:60704277-60704296 None:intergenic 30.0%
CACACACAGTTAAAATACAT+TGG - chr1.3:60703027-60703046 None:intergenic 30.0%
CCATGCTTAATGCAAATATT+AGG + chr1.3:60702765-60702784 MS.gene20938:intron 30.0%
CCTAATATTTGCATTAAGCA+TGG - chr1.3:60702768-60702787 None:intergenic 30.0%
CCTTCAACTAAAAATGGAAT+TGG - chr1.3:60704435-60704454 None:intergenic 30.0%
CTGATAGATTGAGGAATAAA+GGG - chr1.3:60703311-60703330 None:intergenic 30.0%
GATTCTTCTGTGTATTTAAC+CGG + chr1.3:60702428-60702447 MS.gene20938:intron 30.0%
TAAAGATGGAGTAAGATTGA+TGG + chr1.3:60703583-60703602 MS.gene20938:CDS 30.0%
TATTGAGTTTACAGGTAACA+AGG + chr1.3:60704208-60704227 MS.gene20938:intron 30.0%
TCAAGCAGAATAGTCTTTAT+TGG - chr1.3:60702661-60702680 None:intergenic 30.0%
TGATAGATTGAGGAATAAAG+GGG - chr1.3:60703310-60703329 None:intergenic 30.0%
TTACAATAAGTTAGGCTTTC+GGG + chr1.3:60704290-60704309 MS.gene20938:CDS 30.0%
TTTAACATTGGCAACATGAA+TGG + chr1.3:60703859-60703878 MS.gene20938:intron 30.0%
! AAAAATGGAATTGGCTTCTT+CGG - chr1.3:60704426-60704445 None:intergenic 30.0%
! AATGGTTTTCTTTCTTGGAA+TGG - chr1.3:60702687-60702706 None:intergenic 30.0%
! AATTCTGAAAAAGTCTCAGA+TGG - chr1.3:60702617-60702636 None:intergenic 30.0%
! TTTCTTCTTTTACAGCCAAT+AGG + chr1.3:60703368-60703387 MS.gene20938:intron 30.0%
!! AAGAACAAAATGTTGGCTTT+AGG + chr1.3:60703912-60703931 MS.gene20938:intron 30.0%
!! AAGGATAAAGTTGATAGCAT+TGG + chr1.3:60704387-60704406 MS.gene20938:CDS 30.0%
!! ATAAAGTTGATAGCATTGGA+CGG + chr1.3:60704391-60704410 MS.gene20938:CDS 30.0%
!! ATAATTCTGAGATTTATGGG+TGG + chr1.3:60702565-60702584 MS.gene20938:intron 30.0%
!! ATTCATTTTAAGTGAGGAAG+CGG - chr1.3:60703480-60703499 None:intergenic 30.0%
!! GCTCTAAAACCTTGAAAATT+TGG - chr1.3:60702138-60702157 None:intergenic 30.0%
!!! ACTTTATCCTTTTGTTTTGG+AGG - chr1.3:60704378-60704397 None:intergenic 30.0%
!!! CCAATTCCATTTTTAGTTGA+AGG + chr1.3:60704432-60704451 MS.gene20938:CDS 30.0%
!!! TTTTGAGCTTATTTTGATGC+TGG + chr1.3:60703769-60703788 MS.gene20938:intron 30.0%
AAGATGGAGTAAGATTGATG+GGG + chr1.3:60703585-60703604 MS.gene20938:CDS 35.0%
AAGGGATGAAATTGGATAGA+CGG - chr1.3:60702063-60702082 None:intergenic 35.0%
AGAAAGAAAACCATTTCTCC+AGG + chr1.3:60702692-60702711 MS.gene20938:intron 35.0%
ATGGTTTACACTTGCCAAAA+GGG - chr1.3:60703818-60703837 None:intergenic 35.0%
CAAGTGTAAACCATCAAAAG+TGG + chr1.3:60703824-60703843 MS.gene20938:intron 35.0%
CTTGACACTCATAAATCTGA+AGG - chr1.3:60703115-60703134 None:intergenic 35.0%
CTTGGGAAGCAAATTAAAGA+TGG + chr1.3:60703569-60703588 MS.gene20938:CDS 35.0%
GAGTGTCAAGTAACTTCTAA+GGG + chr1.3:60703125-60703144 MS.gene20938:intron 35.0%
GATCACAATGAAAACACTCA+AGG + chr1.3:60703445-60703464 MS.gene20938:CDS 35.0%
TGAAAATTTGGGTGAGCATT+GGG - chr1.3:60702126-60702145 None:intergenic 35.0%
TGAGTGTCAAGTAACTTCTA+AGG + chr1.3:60703124-60703143 MS.gene20938:intron 35.0%
TGGCTTCCTTCAACTAAAAA+TGG - chr1.3:60704441-60704460 None:intergenic 35.0%
TGGTTACTTGTGAGCAATAA+TGG + chr1.3:60702585-60702604 MS.gene20938:intron 35.0%
TGTAAACATATATGGCTGAG+TGG + chr1.3:60702854-60702873 MS.gene20938:intron 35.0%
TTGAAAATTTGGGTGAGCAT+TGG - chr1.3:60702127-60702146 None:intergenic 35.0%
! AATGCTCACCCAAATTTTCA+AGG + chr1.3:60702126-60702145 MS.gene20938:CDS 35.0%
! AGAAGTATACCTGAAAAGTG+AGG - chr1.3:60702374-60702393 None:intergenic 35.0%
! CTTTCCTTGTCTTCTGTTTT+CGG - chr1.3:60702203-60702222 None:intergenic 35.0%
! CTTTTACAGCCAATAGGTTT+GGG + chr1.3:60703374-60703393 MS.gene20938:intron 35.0%
! GCAATTTTTCCCAAACCTAT+TGG - chr1.3:60703386-60703405 None:intergenic 35.0%
! GGAGAAATGGTTTTCTTTCT+TGG - chr1.3:60702692-60702711 None:intergenic 35.0%
! TCTTTTACAGCCAATAGGTT+TGG + chr1.3:60703373-60703392 MS.gene20938:intron 35.0%
! TTTCCTTGTCTTCTGTTTTC+GGG - chr1.3:60702202-60702221 None:intergenic 35.0%
!! ATAAGTGTTTTTGAGGACCA+CGG + chr1.3:60703677-60703696 MS.gene20938:intron 35.0%
!! TCGATTTTGCTATGAAGAGT+TGG + chr1.3:60703945-60703964 MS.gene20938:intron 35.0%
!!! ATTTTTAGTTGAAGGAAGCC+AGG + chr1.3:60704440-60704459 MS.gene20938:CDS 35.0%
!!! TGACAGCCATGTTTTAACAT+TGG + chr1.3:60703847-60703866 MS.gene20938:intron 35.0%
!!! TTATCCTTTTGTTTTGGAGG+AGG - chr1.3:60704375-60704394 None:intergenic 35.0%
!!! TTTTAGAGCTTACAGTCTTC+TGG + chr1.3:60702149-60702168 MS.gene20938:CDS 35.0%
AAAGATACGAGCTTGAACCA+CGG - chr1.3:60703263-60703282 None:intergenic 40.0%
ACCTGAAAAGTGAGGCTAAA+TGG - chr1.3:60702366-60702385 None:intergenic 40.0%
ACTCACAACAAATCCGTTCT+CGG + chr1.3:60702033-60702052 MS.gene20938:CDS 40.0%
AGATTGAGGAATAAAGGGGA+AGG - chr1.3:60703306-60703325 None:intergenic 40.0%
AGCAAACATTAGGTAGCCAA+TGG - chr1.3:60702462-60702481 None:intergenic 40.0%
AGGGATGAAATTGGATAGAC+GGG - chr1.3:60702062-60702081 None:intergenic 40.0%
ATTACCATACACAGGATGCA+GGG + chr1.3:60703543-60703562 MS.gene20938:intron 40.0%
CCTGAAAAGTGAGGCTAAAT+GGG - chr1.3:60702365-60702384 None:intergenic 40.0%
CGAAAACAGAAGACAAGGAA+AGG + chr1.3:60702201-60702220 MS.gene20938:CDS 40.0%
GATGGTTTACACTTGCCAAA+AGG - chr1.3:60703819-60703838 None:intergenic 40.0%
GCCAAAGTGAACTACACATT+TGG - chr1.3:60703081-60703100 None:intergenic 40.0%
GCCAAATGTGTAGTTCACTT+TGG + chr1.3:60703077-60703096 MS.gene20938:intron 40.0%
TAGACCTCCTCCAAAACAAA+AGG + chr1.3:60704368-60704387 MS.gene20938:CDS 40.0%
TATTACCATACACAGGATGC+AGG + chr1.3:60703542-60703561 MS.gene20938:intron 40.0%
TTCAGCTTCACAATGATGCT+CGG - chr1.3:60702742-60702761 None:intergenic 40.0%
TTCCTGATGCAGCAAACATT+AGG - chr1.3:60702472-60702491 None:intergenic 40.0%
! TACCTAATGTTTGCTGCATC+AGG + chr1.3:60702467-60702486 MS.gene20938:intron 40.0%
! TTCCTTGTCTTCTGTTTTCG+GGG - chr1.3:60702201-60702220 None:intergenic 40.0%
!! GTGAGCATTGGGATTAAATG+TGG - chr1.3:60702115-60702134 None:intergenic 40.0%
AAAGGGGAAGGATACCAAAC+AGG - chr1.3:60703294-60703313 None:intergenic 45.0%
AACCACGTTTAGGCATCCTA+CGG - chr1.3:60702335-60702354 None:intergenic 45.0%
AAGGGGAAGGATACCAAACA+GGG - chr1.3:60703293-60703312 None:intergenic 45.0%
ACAAGGAAAGGTCGTGGTAT+TGG + chr1.3:60702213-60702232 MS.gene20938:CDS 45.0%
AGCCAGGAAAGGTTCAAAGT+TGG + chr1.3:60702281-60702300 MS.gene20938:CDS 45.0%
ATCTTTGGACCTTCCCTGTT+TGG + chr1.3:60703277-60703296 MS.gene20938:intron 45.0%
CACGAACGTTGAAAGAGTGA+GGG - chr1.3:60702092-60702111 None:intergenic 45.0%
CCAATGGCCAATTCATCTAG+AGG + chr1.3:60703625-60703644 MS.gene20938:CDS 45.0%
CCAGGAAAGGTTCAAAGTTG+GGG + chr1.3:60702283-60702302 MS.gene20938:CDS 45.0%
CCTCTAGATGAATTGGCCAT+TGG - chr1.3:60703628-60703647 None:intergenic 45.0%
CCTGAGTGGTTTGAGAAGAA+AGG + chr1.3:60704324-60704343 MS.gene20938:CDS 45.0%
CCTTTCTTCTCAAACCACTC+AGG - chr1.3:60704327-60704346 None:intergenic 45.0%
GCCAGGAAAGGTTCAAAGTT+GGG + chr1.3:60702282-60702301 MS.gene20938:CDS 45.0%
GGGTTCTTGAAACCACGTTT+AGG - chr1.3:60702345-60702364 None:intergenic 45.0%
GTGGTTCAAGCTCGTATCTT+TGG + chr1.3:60703262-60703281 MS.gene20938:intron 45.0%
TAGTCATAAATCCCTAGCCG+TGG + chr1.3:60703243-60703262 MS.gene20938:intron 45.0%
TCAGCTTCACAATGATGCTC+GGG - chr1.3:60702741-60702760 None:intergenic 45.0%
TTAACCGGGAACTTGACCAT+TGG + chr1.3:60702443-60702462 MS.gene20938:intron 45.0%
TTACCATACACAGGATGCAG+GGG + chr1.3:60703544-60703563 MS.gene20938:intron 45.0%
TTCCCCGAAAACAGAAGACA+AGG + chr1.3:60702196-60702215 MS.gene20938:CDS 45.0%
! AAAGGTCGTGGTATTGGATC+TGG + chr1.3:60702219-60702238 MS.gene20938:CDS 45.0%
! CAAAAGGGAAAAGAGAGTGC+AGG - chr1.3:60703803-60703822 None:intergenic 45.0%
! CGTGGTATTGGATCTGGAAA+GGG + chr1.3:60702225-60702244 MS.gene20938:CDS 45.0%
! CTGCACTCTCTTTTCCCTTT+TGG + chr1.3:60703801-60703820 MS.gene20938:intron 45.0%
! TCGTGGTATTGGATCTGGAA+AGG + chr1.3:60702224-60702243 MS.gene20938:CDS 45.0%
!! ATGGCTGTCACCACTTTTGA+TGG - chr1.3:60703837-60703856 None:intergenic 45.0%
!! CCCATTTAGCCTCACTTTTC+AGG + chr1.3:60702362-60702381 MS.gene20938:CDS 45.0%
!! GTGGTTCTGAGAAGATCCAA+TGG + chr1.3:60703609-60703628 MS.gene20938:CDS 45.0%
!! ATTATAATATTCAAAAATAT+AGG - chr1.3:60702550-60702569 None:intergenic 5.0%
AAAGAGTGAGGGAGCTGCAA+GGG - chr1.3:60702081-60702100 None:intergenic 50.0%
AAAGGGAAAGACTGCTGGGA+GGG + chr1.3:60702242-60702261 MS.gene20938:CDS 50.0%
AGGTAACAAGGGTCACTGTC+AGG + chr1.3:60704220-60704239 MS.gene20938:intron 50.0%
CAGAAGACAAGGAAAGGTCG+TGG + chr1.3:60702207-60702226 MS.gene20938:CDS 50.0%
CCCCAACTTTGAACCTTTCC+TGG - chr1.3:60702286-60702305 None:intergenic 50.0%
CTGGAAAGGGAAAGACTGCT+GGG + chr1.3:60702238-60702257 MS.gene20938:CDS 50.0%
GATAGACGGGTATCCGAGAA+CGG - chr1.3:60702049-60702068 None:intergenic 50.0%
GCACGAACGTTGAAAGAGTG+AGG - chr1.3:60702093-60702112 None:intergenic 50.0%
GGAAGGATACCAAACAGGGA+AGG - chr1.3:60703289-60703308 None:intergenic 50.0%
GGAGCTGCAAGGGATGAAAT+TGG - chr1.3:60702071-60702090 None:intergenic 50.0%
GGTAACAAGGGTCACTGTCA+GGG + chr1.3:60704221-60704240 MS.gene20938:intron 50.0%
GGTTCAAAGTTGGGGTTCGA+AGG + chr1.3:60702291-60702310 MS.gene20938:CDS 50.0%
GTAGCCAATGGTCAAGTTCC+CGG - chr1.3:60702450-60702469 None:intergenic 50.0%
TCAAAGTTGGGGTTCGAAGG+AGG + chr1.3:60702294-60702313 MS.gene20938:CDS 50.0%
TCTGGAAAGGGAAAGACTGC+TGG + chr1.3:60702237-60702256 MS.gene20938:CDS 50.0%
! TTGAACCTTTCCTGGCTCTC+TGG - chr1.3:60702278-60702297 None:intergenic 50.0%
!! AGGATCAAAAGGCATCACCG+TGG - chr1.3:60703697-60703716 None:intergenic 50.0%
AAAGGCCAGAGAGCCAGGAA+AGG + chr1.3:60702270-60702289 MS.gene20938:CDS 55.0%
AAGCAGTTGAAGCGGCTGGT+GGG + chr1.3:60704250-60704269 MS.gene20938:CDS 55.0%
AAGGAAGCAGTTGAAGCGGC+TGG + chr1.3:60704246-60704265 MS.gene20938:CDS 55.0%
AAGGGAAAGACTGCTGGGAG+GGG + chr1.3:60702243-60702262 MS.gene20938:CDS 55.0%
ACGAGCTTGAACCACGGCTA+GGG - chr1.3:60703257-60703276 None:intergenic 55.0%
AGCCGCTTCAACTGCTTCCT+TGG - chr1.3:60704247-60704266 None:intergenic 55.0%
GAAAGAGTGAGGGAGCTGCA+AGG - chr1.3:60702082-60702101 None:intergenic 55.0%
GAAAGGGAAAGACTGCTGGG+AGG + chr1.3:60702241-60702260 MS.gene20938:CDS 55.0%
GCTGACCTACTGGAAGATCC+TGG - chr1.3:60704461-60704480 None:intergenic 55.0%
GCTGAGTGGCTTGACTGTGT+TGG + chr1.3:60702868-60702887 MS.gene20938:intron 55.0%
GGAAGCCAGGATCTTCCAGT+AGG + chr1.3:60704453-60704472 MS.gene20938:CDS 55.0%
GGAGTAAGATTGATGGGGCG+TGG + chr1.3:60703590-60703609 MS.gene20938:CDS 55.0%
GGCCAAGGAAGCAGTTGAAG+CGG + chr1.3:60704242-60704261 MS.gene20938:CDS 55.0%
GTACCCCTGCATCCTGTGTA+TGG - chr1.3:60703550-60703569 None:intergenic 55.0%
TACGAGCTTGAACCACGGCT+AGG - chr1.3:60703258-60703277 None:intergenic 55.0%
TAGGCATCCTACGGCGAAGA+GGG - chr1.3:60702326-60702345 None:intergenic 55.0%
TTAGGCATCCTACGGCGAAG+AGG - chr1.3:60702327-60702346 None:intergenic 55.0%
! GGAATTGGCTTCTTCGGAGC+AGG - chr1.3:60704420-60704439 None:intergenic 55.0%
! GGAGGAGGTCTAGCTGCTTT+AGG - chr1.3:60704360-60704379 None:intergenic 55.0%
!! ACACAGGATGCAGGGGTACT+TGG + chr1.3:60703551-60703570 MS.gene20938:intron 55.0%
!! CACAGGATGCAGGGGTACTT+GGG + chr1.3:60703552-60703571 MS.gene20938:intron 55.0%
AAGGGTCACTGTCAGGGCCA+AGG + chr1.3:60704227-60704246 MS.gene20938:CDS 60.0%
ACTGCTGGGAGGGGTCACAA+AGG + chr1.3:60702252-60702271 MS.gene20938:CDS 60.0%
AGGCATCCTACGGCGAAGAG+GGG - chr1.3:60702325-60702344 None:intergenic 60.0%
CGCCGTAGGATGCCTAAACG+TGG + chr1.3:60702330-60702349 MS.gene20938:CDS 60.0%
GAAGCAGTTGAAGCGGCTGG+TGG + chr1.3:60704249-60704268 MS.gene20938:CDS 60.0%
GTCACAAAGGCCAGAGAGCC+AGG + chr1.3:60702265-60702284 MS.gene20938:CDS 60.0%
TCCTACGGCGAAGAGGGGTT+TGG - chr1.3:60702320-60702339 None:intergenic 60.0%
! GGGCACTGTTGAAGCCTGAG+TGG + chr1.3:60704310-60704329 MS.gene20938:CDS 60.0%
GCCAAACCCCTCTTCGCCGT+AGG + chr1.3:60702316-60702335 MS.gene20938:CDS 65.0%
! GGCTGGTGGGTCCGTCAGAA+AGG + chr1.3:60704263-60704282 MS.gene20938:CDS 65.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 60701982 60704488 60701982 ID=MS.gene20938
chr1.3 mRNA 60701982 60704488 60701982 ID=MS.gene20938.t1;Parent=MS.gene20938
chr1.3 exon 60701982 60702383 60701982 ID=MS.gene20938.t1.exon1;Parent=MS.gene20938.t1
chr1.3 CDS 60701982 60702383 60701982 ID=cds.MS.gene20938.t1;Parent=MS.gene20938.t1
chr1.3 exon 60703383 60703466 60703383 ID=MS.gene20938.t1.exon2;Parent=MS.gene20938.t1
chr1.3 CDS 60703383 60703466 60703383 ID=cds.MS.gene20938.t1;Parent=MS.gene20938.t1
chr1.3 exon 60703557 60703646 60703557 ID=MS.gene20938.t1.exon3;Parent=MS.gene20938.t1
chr1.3 CDS 60703557 60703646 60703557 ID=cds.MS.gene20938.t1;Parent=MS.gene20938.t1
chr1.3 exon 60704222 60704488 60704222 ID=MS.gene20938.t1.exon4;Parent=MS.gene20938.t1
chr1.3 CDS 60704222 60704488 60704222 ID=cds.MS.gene20938.t1;Parent=MS.gene20938.t1
Gene Sequence

>MS.gene20938

ATGCTAAGAAGAAGGCTTTCTGTTCTCTCGACTTCAATCATCAGAAGTTCGACTCACAACAAATCCGTTCTCGGATACCCGTCTATCCAATTTCATCCCTTGCAGCTCCCTCACTCTTTCAACGTTCGTGCCACATTTAATCCCAATGCTCACCCAAATTTTCAAGGTTTTAGAGCTTACAGTCTTCTGGCCTTGAATGATCTGAGAGATAATGTTCCCCGAAAACAGAAGACAAGGAAAGGTCGTGGTATTGGATCTGGAAAGGGAAAGACTGCTGGGAGGGGTCACAAAGGCCAGAGAGCCAGGAAAGGTTCAAAGTTGGGGTTCGAAGGAGGCCAAACCCCTCTTCGCCGTAGGATGCCTAAACGTGGTTTCAAGAACCCATTTAGCCTCACTTTTCAGGTATACTTCTTCCTGTTTATATATCTTTTTTGTTTTTGATTAATGATTCTTCTGTGTATTTAACCGGGAACTTGACCATTGGCTACCTAATGTTTGCTGCATCAGGAAAATGAAATTACGCCTTAGTATATTATTAGAGTTCATTAGTTATAATTGTGGAACTCCTATATTTTTGAATATTATAATTCTGAGATTTATGGGTGGTTACTTGTGAGCAATAATGGAGTTCTCCATCTGAGACTTTTTCAGAATTTCTTTTGCATACTTATTAAAACCAATAAAGACTATTCTGCTTGACTTCCATTCCAAGAAAGAAAACCATTTCTCCAGGAATATTATTAAAAATTATGCATACCCGAGCATCATTGTGAAGCTGAAGTGCCATGCTTAATGCAAATATTAGGTTTTAATTTTATTACAAGACATCATATGCAAGATAAGATTTTTATTTCAAGGACTCTGAAATCTTCTGTAAACATATATGGCTGAGTGGCTTGACTGTGTTGGTTTTGATTGATAAACCTCTTATTTCTACATGTCAATTGCCAAGTATGATATGCACTAAAAAGTAATGTGCATGTCGACAACAAATATATTTCAAAGTTTATACTTTATTGTATTGACATTTGACGGATATTTACCAATGTATTTTAACTGTGTGTGTGTGTGATTTTTGATATAGAATGACATAATGCCAAATGTGTAGTTCACTTTGGCTGATATTTGAGCCTTCAGATTTATGAGTGTCAAGTAACTTCTAAGGGACTATTCTAGTTGTATTAAATAATTTTGTGTGCATAATTTAATTCTTTAATATTTTTTTTATTTTAATGTCTAGATAAGTTTATGTGGAGTAGAGTAGTCATAAATCCCTAGCCGTGGTTCAAGCTCGTATCTTTGGACCTTCCCTGTTTGGTATCCTTCCCCTTTATTCCTCAATCTATCAGTCATATTATCTACTGCTGTATTCAGAAGTTTGTTTTATTTCTTCTTTTACAGCCAATAGGTTTGGGAAAAATTGCAACATTTATCAATGCTGGCAAGATAGATTCTTCTGAATTGATCACAATGAAAACACTCAAGGTTTTTGTGACCGCTTCCTCACTTAAAATGAATTTGTTTGCTTCATGTGCTCCCTCTCATTCTTTTGTTTATTATTATTACCATACACAGGATGCAGGGGTACTTGGGAAGCAAATTAAAGATGGAGTAAGATTGATGGGGCGTGGTTCTGAGAAGATCCAATGGCCAATTCATCTAGAGGTATGTATACTTTGATTTGAAGGCTAAGTAATAAGTGTTTTTGAGGACCACGGTGATGCCTTTTGATCCTTAAATCTTTAGAAATACTTTTTAACTTTTTTGAACTTATCTGATATCATTAATTTTGAGCTTATTTTGATGCTGGCTTGAAAGCCTGCACTCTCTTTTCCCTTTTGGCAAGTGTAAACCATCAAAAGTGGTGACAGCCATGTTTTAACATTGGCAACATGAATGGTATATAAAATTTCTGTAGTGTCTAAGGATAAAGAACAAAATGTTGGCTTTAGGTTTCGTAATTTCGATTTTGCTATGAAGAGTTGGAATAGCTCTTATATCTTCAAAGTTTACTTGCTAATTTTCTCAAACTTAGACATTTTCTGTTTTGTATTTCAAATAAAGAATTAAACTCATATAGTATGAGATTTTGATTACATGTTATGCTTCTGTTTGTCAATGAGATAAATAAATGTAAAATTGGTACTTTTTTCAATTCTAAACACTTAAGGTGTAGGTTTTATACAGTCACAAACTTTATAGGCATATAAGAGGGGTGTTATAACTTATTGAGTTTACAGGTAACAAGGGTCACTGTCAGGGCCAAGGAAGCAGTTGAAGCGGCTGGTGGGTCCGTCAGAAAGGTGTATTACAATAAGTTAGGCTTTCGGGCACTGTTGAAGCCTGAGTGGTTTGAGAAGAAAGGAAGATTGTTGCCTAAAGCAGCTAGACCTCCTCCAAAACAAAAGGATAAAGTTGATAGCATTGGACGGCTGCCTGCTCCGAAGAAGCCAATTCCATTTTTAGTTGAAGGAAGCCAGGATCTTCCAGTAGGTCAGCTCAGTTAA
Protein sequence

>MS.gene20938.t1

MLRRRLSVLSTSIIRSSTHNKSVLGYPSIQFHPLQLPHSFNVRATFNPNAHPNFQGFRAYSLLALNDLRDNVPRKQKTRKGRGIGSGKGKTAGRGHKGQRARKGSKLGFEGGQTPLRRRMPKRGFKNPFSLTFQPIGLGKIATFINAGKIDSSELITMKTLKDAGVLGKQIKDGVRLMGRGSEKIQWPIHLEVTRVTVRAKEAVEAAGGSVRKVYYNKLGFRALLKPEWFEKKGRLLPKAARPPPKQKDKVDSIGRLPAPKKPIPFLVEGSQDLPVGQLS