AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene022190

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene022190.t1 MTR_6g071340 97.368 418 11 0 21 438 1 418 0.0 837
MS.gene022190.t1 MTR_5g048050 95.890 438 18 0 1 438 1 438 0.0 808
MS.gene022190.t1 MTR_5g077510 49.451 455 200 11 1 438 1 442 5.30e-140 408
MS.gene022190.t1 MTR_3g065080 46.785 451 211 8 1 435 1 438 6.35e-128 377
MS.gene022190.t1 MTR_1g056880 31.308 428 247 11 20 415 2 414 3.56e-54 187
MS.gene022190.t1 MTR_1g056870 31.308 428 247 11 20 415 2 414 3.87e-54 186
MS.gene022190.t1 MTR_2g087350 34.653 404 231 11 22 415 3 383 3.87e-54 186
MS.gene022190.t1 MTR_4g085720 32.266 406 241 10 20 416 9 389 2.00e-50 176
MS.gene022190.t1 MTR_7g106340 29.782 413 252 11 22 415 5 398 3.71e-50 176
MS.gene022190.t1 MTR_1g056840 29.698 431 224 13 20 415 2 388 1.19e-45 163
MS.gene022190.t1 MTR_1g056910 30.348 402 253 11 22 414 3 386 8.27e-43 155
MS.gene022190.t1 MTR_8g092870 26.887 424 279 9 18 429 3 407 1.06e-40 150
MS.gene022190.t1 MTR_5g015210 29.219 397 242 9 25 415 67 430 1.01e-36 140
MS.gene022190.t1 MTR_3g095730 27.594 424 264 15 23 429 11 408 2.83e-36 138
MS.gene022190.t1 MTR_4g051515 27.251 411 261 16 22 415 3 392 5.66e-34 132
MS.gene022190.t1 MTR_4g485520 27.603 413 248 14 18 414 99 476 3.22e-29 119
MS.gene022190.t1 MTR_4g485520 27.603 413 248 14 18 414 267 644 7.06e-29 119
MS.gene022190.t1 MTR_4g063800 27.934 426 233 17 24 422 254 632 7.28e-28 117
MS.gene022190.t1 MTR_1g017770 26.000 400 256 9 25 415 45 413 9.10e-27 112
MS.gene022190.t1 MTR_5g083030 25.694 432 250 10 21 417 289 684 1.68e-25 109
MS.gene022190.t1 MTR_3g096370 27.427 412 265 14 18 416 3 393 1.73e-25 107
MS.gene022190.t1 MTR_7g059405 26.914 405 251 16 24 417 263 633 3.62e-24 105
MS.gene022190.t1 MTR_7g078330 25.316 395 268 11 23 416 272 640 1.91e-23 103
MS.gene022190.t1 MTR_4g028960 51.948 77 37 0 20 96 275 351 1.19e-22 101
MS.gene022190.t1 MTR_1g094215 28.132 423 240 17 24 425 63 442 1.32e-22 100
MS.gene022190.t1 MTR_1g094215 28.132 423 240 17 24 425 246 625 4.60e-22 99.4
MS.gene022190.t1 MTR_3g085610 41.346 104 53 2 11 114 268 363 3.25e-21 97.1
MS.gene022190.t1 MTR_7g053260 34.532 139 76 2 3 141 56 179 7.46e-21 95.1
MS.gene022190.t1 MTR_2g018010 52.857 70 33 0 23 92 290 359 1.14e-20 95.1
MS.gene022190.t1 MTR_3g078160 42.529 87 50 0 10 96 260 346 2.50e-20 94.0
MS.gene022190.t1 MTR_3g078160 42.529 87 50 0 10 96 260 346 2.57e-20 94.0
MS.gene022190.t1 MTR_3g078160 42.529 87 50 0 10 96 260 346 3.42e-20 93.6
MS.gene022190.t1 MTR_4g107010 52.857 70 33 0 26 95 281 350 4.25e-20 93.6
MS.gene022190.t1 MTR_8g080280 24.359 468 275 19 10 420 267 712 2.82e-19 90.9
MS.gene022190.t1 MTR_7g116600 50.617 81 36 2 26 106 79 155 1.01e-18 88.6
MS.gene022190.t1 MTR_5g034440 53.030 66 31 0 27 92 282 347 2.89e-18 87.8
MS.gene022190.t1 MTR_4g091880 47.222 72 37 1 21 91 1 72 2.46e-17 83.2
MS.gene022190.t1 MTR_4g091880 47.222 72 37 1 21 91 1 72 2.69e-17 83.6
MS.gene022190.t1 MTR_1g069845 44.286 70 39 0 23 92 122 191 6.46e-17 83.6
MS.gene022190.t1 MTR_7g097020 46.269 67 36 0 29 95 245 311 7.46e-17 83.6
MS.gene022190.t1 MTR_1g069845 44.286 70 39 0 23 92 239 308 1.11e-16 82.8
MS.gene022190.t1 MTR_1g069845 44.286 70 39 0 23 92 243 312 1.11e-16 82.8
MS.gene022190.t1 MTR_1g079450 39.394 99 53 3 20 118 58 149 5.82e-16 80.1
MS.gene022190.t1 MTR_8g077205 41.860 86 46 2 21 106 159 240 1.74e-15 79.3
MS.gene022190.t1 MTR_8g077205 41.860 86 46 2 21 106 271 352 2.04e-15 79.0
MS.gene022190.t1 MTR_3g466220 38.272 81 50 0 15 95 223 303 4.30e-15 78.2
MS.gene022190.t1 MTR_3g466220 38.272 81 50 0 15 95 202 282 4.64e-15 78.2
MS.gene022190.t1 MTR_5g020570 39.286 84 47 2 23 106 271 350 4.46e-14 74.7
MS.gene022190.t1 MTR_5g020570 39.286 84 47 2 23 106 286 365 5.19e-14 74.7
MS.gene022190.t1 MTR_2g011140 43.750 64 36 0 28 91 18 81 6.06e-14 73.6
MS.gene022190.t1 MTR_7g117890 43.902 82 41 2 11 91 244 321 7.66e-14 74.3
MS.gene022190.t1 MTR_8g103227 46.269 67 35 1 26 91 396 462 5.89e-13 71.6
MS.gene022190.t1 MTR_3g096370 62.791 43 16 0 18 60 3 45 9.80e-13 68.9
MS.gene022190.t1 MTR_2g096850 40.000 70 42 0 22 91 586 655 1.30e-12 70.1
MS.gene022190.t1 MTR_2g096850 40.000 70 42 0 22 91 737 806 1.40e-12 70.1
MS.gene022190.t1 MTR_3g115670 42.105 76 39 1 25 95 30 105 1.68e-12 70.1
MS.gene022190.t1 MTR_1g093965 43.750 64 33 1 38 101 1 61 2.57e-12 66.2
MS.gene022190.t1 MTR_1g090320 41.463 82 39 3 16 95 510 584 3.09e-12 69.3
MS.gene022190.t1 MTR_1g090320 41.463 82 39 3 16 95 512 586 3.20e-12 69.3
MS.gene022190.t1 MTR_7g077780 39.394 66 40 0 26 91 827 892 3.90e-12 68.9
MS.gene022190.t1 MTR_1g093995 43.750 64 33 1 38 101 1 61 5.61e-12 65.1
MS.gene022190.t1 MTR_3g008270 45.455 66 35 1 26 91 731 795 5.82e-12 68.2
MS.gene022190.t1 MTR_5g032010 37.313 67 42 0 25 91 732 798 9.83e-12 67.4
MS.gene022190.t1 MTR_1g100820 37.879 66 41 0 26 91 647 712 1.60e-11 67.0
MS.gene022190.t1 MTR_1g100820 37.879 66 41 0 26 91 649 714 1.62e-11 66.6
MS.gene022190.t1 MTR_7g005940 39.726 73 41 2 25 95 595 666 7.39e-11 65.1
MS.gene022190.t1 MTR_7g005940 39.726 73 41 2 25 95 595 666 7.52e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene022190.t1 AT5G37490 43.891 442 229 6 5 438 5 435 2.37e-113 340
MS.gene022190.t1 AT1G66160 42.453 424 217 9 21 438 29 431 2.69e-110 332
MS.gene022190.t1 AT1G66160 40.094 424 211 10 21 438 29 415 1.60e-97 298
MS.gene022190.t1 AT3G02840 40.173 346 194 8 100 438 40 379 1.53e-72 233
MS.gene022190.t1 AT2G35930 32.446 413 241 12 16 415 3 390 6.82e-56 191
MS.gene022190.t1 AT1G49780 31.436 404 256 7 20 416 9 398 1.46e-49 174
MS.gene022190.t1 AT3G19380 30.789 393 245 10 20 403 9 383 7.64e-47 167
MS.gene022190.t1 AT3G11840 29.128 436 250 13 22 414 7 426 9.93e-41 151
MS.gene022190.t1 AT3G52450 45.652 138 67 4 20 155 2 133 3.46e-34 132
MS.gene022190.t1 AT5G09800 27.114 402 259 12 25 416 11 388 8.70e-32 125
MS.gene022190.t1 AT3G49810 27.340 406 252 11 25 422 64 434 2.03e-31 125
MS.gene022190.t1 AT5G64660 28.087 413 267 13 18 416 3 399 1.24e-30 122
MS.gene022190.t1 AT5G65920 27.586 406 251 11 25 422 60 430 2.95e-29 119
MS.gene022190.t1 AT5G65920 27.586 406 251 11 25 422 60 430 2.95e-29 119
MS.gene022190.t1 AT3G18710 25.301 415 260 15 23 416 10 395 8.38e-28 114
MS.gene022190.t1 AT1G71020 26.492 419 264 14 12 416 82 470 1.88e-25 108
MS.gene022190.t1 AT3G54850 27.561 410 246 14 24 417 247 621 4.19e-25 108
MS.gene022190.t1 AT1G23030 28.125 416 252 16 12 416 228 607 4.26e-25 108
MS.gene022190.t1 AT1G71020 26.747 415 268 13 12 416 230 618 4.31e-25 108
MS.gene022190.t1 AT2G28830 27.518 407 248 14 23 413 182 557 2.71e-24 105
MS.gene022190.t1 AT3G46510 25.647 425 269 17 3 414 235 625 9.30e-23 101
MS.gene022190.t1 AT5G42340 27.381 252 147 5 14 232 279 527 2.35e-21 97.4
MS.gene022190.t1 AT5G01830 51.389 72 35 0 25 96 274 345 2.74e-20 94.0
MS.gene022190.t1 AT1G29340 50.704 71 35 0 23 93 303 373 2.70e-19 91.3
MS.gene022190.t1 AT1G27910 38.261 115 63 3 14 126 268 376 1.11e-18 89.4
MS.gene022190.t1 AT1G24330 33.533 167 90 6 2 153 246 406 1.12e-18 89.4
MS.gene022190.t1 AT1G24330 33.533 167 90 6 2 153 246 406 1.12e-18 89.4
MS.gene022190.t1 AT1G67530 35.606 132 75 3 2 127 243 370 1.92e-18 88.6
MS.gene022190.t1 AT1G67530 35.606 132 75 3 2 127 243 370 1.92e-18 88.6
MS.gene022190.t1 AT1G67530 35.606 132 75 3 2 127 243 370 1.92e-18 88.6
MS.gene022190.t1 AT1G67530 35.606 132 75 3 2 127 243 370 2.02e-18 88.2
MS.gene022190.t1 AT3G07360 45.570 79 40 1 23 101 72 147 1.10e-17 85.5
MS.gene022190.t1 AT1G10560 32.414 145 84 2 31 164 294 435 1.88e-17 85.5
MS.gene022190.t1 AT3G54790 43.421 76 43 0 23 98 200 275 8.54e-17 83.6
MS.gene022190.t1 AT1G01680 37.931 87 49 1 9 95 222 303 1.17e-16 80.9
MS.gene022190.t1 AT3G54790 43.421 76 43 0 23 98 236 311 1.20e-16 82.8
MS.gene022190.t1 AT3G54790 43.421 76 43 0 23 98 236 311 1.20e-16 82.8
MS.gene022190.t1 AT4G21350 47.222 72 37 1 21 91 1 72 2.83e-16 80.5
MS.gene022190.t1 AT1G60190 32.215 149 83 4 27 164 280 421 2.97e-15 78.6
MS.gene022190.t1 AT4G36550 37.500 72 45 0 24 95 218 289 1.92e-14 75.9
MS.gene022190.t1 AT3G61390 43.939 66 37 0 26 91 279 344 3.31e-14 74.3
MS.gene022190.t1 AT3G61390 43.939 66 37 0 26 91 354 419 4.60e-14 74.3
MS.gene022190.t1 AT2G23140 36.082 97 58 1 23 119 228 320 1.35e-13 73.6
MS.gene022190.t1 AT2G23140 36.082 97 58 1 23 119 228 320 1.35e-13 73.6
MS.gene022190.t1 AT2G23140 36.082 97 58 1 23 119 231 323 1.35e-13 73.6
MS.gene022190.t1 AT3G49060 42.424 66 38 0 26 91 736 801 1.47e-13 73.6
MS.gene022190.t1 AT3G49060 42.424 66 38 0 26 91 726 791 1.52e-13 73.2
MS.gene022190.t1 AT3G49060 42.424 66 38 0 26 91 703 768 1.56e-13 73.2
MS.gene022190.t1 AT2G23140 36.082 97 58 1 23 119 39 131 1.62e-13 73.2
MS.gene022190.t1 AT2G23140 36.082 97 58 1 23 119 39 131 1.62e-13 73.2
MS.gene022190.t1 AT1G01660 38.571 70 43 0 26 95 499 568 1.62e-13 72.8
MS.gene022190.t1 AT1G01660 38.571 70 43 0 26 95 498 567 1.66e-13 72.8
MS.gene022190.t1 AT2G45920 42.424 66 38 0 26 91 326 391 1.94e-13 72.0
MS.gene022190.t1 AT1G56040 38.824 85 51 1 7 90 334 418 1.21e-12 69.7
MS.gene022190.t1 AT5G67340 36.986 73 46 0 23 95 238 310 1.45e-12 70.1
MS.gene022190.t1 AT5G67340 36.986 73 46 0 23 95 238 310 1.45e-12 70.1
MS.gene022190.t1 AT1G56030 43.077 65 37 0 26 90 324 388 1.84e-12 68.9
MS.gene022190.t1 AT5G51270 40.845 71 41 1 26 96 736 805 2.06e-12 69.7
MS.gene022190.t1 AT5G51270 40.845 71 41 1 26 96 736 805 2.06e-12 69.7
MS.gene022190.t1 AT5G65500 41.333 75 41 1 17 91 718 789 2.16e-12 69.7
MS.gene022190.t1 AT5G65500 41.333 75 41 1 17 91 710 781 2.19e-12 69.7
MS.gene022190.t1 AT1G01670 40.909 66 39 0 26 91 211 276 1.10e-11 65.9
MS.gene022190.t1 AT1G01670 40.909 66 39 0 26 91 295 360 1.84e-11 65.9
MS.gene022190.t1 AT1G01670 40.909 66 39 0 26 91 295 360 1.84e-11 65.9
MS.gene022190.t1 AT5G18340 32.110 109 67 3 12 120 61 162 4.83e-11 65.1
MS.gene022190.t1 AT5G18320 30.709 127 82 4 23 146 70 193 5.85e-11 64.7

Find 49 sgRNAs with CRISPR-Local

Find 65 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAGAAAGCTTTAACTATTT+TGG 0.084598 6.3:-67933128 MS.gene022190:CDS
TCAAATTGATGAATCCTTAT+AGG 0.188148 6.3:-67932838 MS.gene022190:CDS
AATCATCATTGAGGATAATT+TGG 0.200592 6.3:-67933264 MS.gene022190:CDS
TTCATCAAATCAAGAGTAAT+TGG 0.206017 6.3:+67933982 None:intergenic
CAAATTGATGAATCCTTATA+GGG 0.287604 6.3:-67932837 MS.gene022190:CDS
TGATTCCAAATCATTCTCTT+AGG 0.293043 6.3:-67933843 MS.gene022190:CDS
TTGAAAGAGATTCTTTCTTT+TGG 0.293237 6.3:-67933382 MS.gene022190:CDS
TGACTTAACAATTCCTTTGT+TGG 0.326123 6.3:-67933059 MS.gene022190:CDS
ATCGAGCTAACCGGTATTCT+TGG 0.327497 6.3:+67933760 None:intergenic
AATATTCTGTATCTTCTATA+TGG 0.331141 6.3:-67933000 MS.gene022190:CDS
TCTTCCAATTCAGCCCTATA+AGG 0.335630 6.3:+67932824 None:intergenic
ATTGGACACCTAAATTGATT+TGG 0.335859 6.3:+67934000 None:intergenic
GGTATCACTACCTCCATGTT+TGG 0.338704 6.3:+67934021 None:intergenic
CTTCTTTACATTGCATGGTT+TGG 0.340089 6.3:-67933453 MS.gene022190:CDS
GAAACATGTAGAAGCACTTA+TGG 0.341465 6.3:-67933353 MS.gene022190:CDS
TAGTGATACCAAATCAATTT+AGG 0.346434 6.3:-67934008 MS.gene022190:CDS
GAATCCTTATAGGGCTGAAT+TGG 0.347326 6.3:-67932828 MS.gene022190:CDS
TTTGAAGCATCAAGATGTTA+AGG 0.349669 6.3:-67933428 MS.gene022190:CDS
GCAAAAGGTTTGGATCAATA+TGG 0.357148 6.3:-67933700 MS.gene022190:CDS
TTCATTTGTAGAATTGGGTT+TGG 0.379894 6.3:-67933197 MS.gene022190:CDS
TTCAATACTCTCTCTATCAT+AGG 0.380174 6.3:+67933930 None:intergenic
TGGTGTTAGGTTGGGGAAGA+AGG 0.382817 6.3:-67934074 MS.gene022190:CDS
ATTATCCTAAGAGAATGATT+TGG 0.383748 6.3:+67933838 None:intergenic
ATATGGAAGATGTGCAAATA+TGG 0.397606 6.3:-67932983 MS.gene022190:CDS
TCAATATGGTTGTATTGAAT+TGG 0.405007 6.3:-67933686 MS.gene022190:CDS
TAAGGAATCAGCAAAAGGTT+TGG 0.411626 6.3:-67933710 MS.gene022190:CDS
TTGAAGCATCAAGATGTTAA+GGG 0.415181 6.3:-67933427 MS.gene022190:CDS
TTAGGATAATGATTCAAGAT+TGG 0.432186 6.3:-67933825 MS.gene022190:CDS
AAAAGCTTCTTTACATTGCA+TGG 0.440899 6.3:-67933458 MS.gene022190:CDS
GAAACATCGATCGAGCTAAC+CGG 0.450457 6.3:+67933751 None:intergenic
CGAGTTAAGGAATCAGCAAA+AGG 0.455195 6.3:-67933715 MS.gene022190:CDS
GATCCTGTGACATTGTCAAC+AGG 0.477744 6.3:-67933958 MS.gene022190:CDS
TTTAAGATGGTGTTAGGTTG+GGG 0.480803 6.3:-67934081 None:intergenic
TGTGTTGAGAATAGACAAAA+TGG 0.498744 6.3:-67933802 MS.gene022190:CDS
CTAACCGGTATTCTTGGAGT+TGG 0.500673 6.3:+67933766 None:intergenic
TTGATAGAAGCACTTCAAGT+TGG 0.507973 6.3:-67932935 MS.gene022190:CDS
ATTGAAAGATGGTTCAATGA+AGG 0.518770 6.3:-67933913 MS.gene022190:CDS
ATAGAGAGAGTATTGAAAGA+TGG 0.521682 6.3:-67933924 MS.gene022190:CDS
CTATTATTGGTATTGCAAGT+TGG 0.529827 6.3:-67932899 MS.gene022190:CDS
GAAGCACTTATGGAAATTGA+AGG 0.535964 6.3:-67933343 MS.gene022190:CDS
ATTCCTGTTGACAATGTCAC+AGG 0.541677 6.3:+67933955 None:intergenic
CAAAGGTGGAAAACCAAACA+TGG 0.558197 6.3:-67934034 MS.gene022190:CDS
ACAGAATATTCTGTAGTCAA+AGG 0.569758 6.3:+67933013 None:intergenic
GATTCCAACTCCAAGAATAC+CGG 0.580125 6.3:-67933770 MS.gene022190:CDS
CTTACAACTTGATTTGTGAG+AGG 0.581086 6.3:+67933877 None:intergenic
TAATCACAAAATCATCATTG+AGG 0.586969 6.3:-67933273 MS.gene022190:CDS
AATGGAGTAATGAAAGTGAG+AGG 0.609225 6.3:-67933648 MS.gene022190:CDS
ATAGACAAAATGGTGTTGAG+AGG 0.615873 6.3:-67933792 MS.gene022190:CDS
AGGTGGAAAACCAAACATGG+AGG 0.758131 6.3:-67934031 MS.gene022190:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTTTCATTTGTAGAATT+GGG - chr6.3:67933654-67933673 MS.gene022190:CDS 15.0%
!!! TTTTTCATTGAAATTAGAAT+TGG + chr6.3:67933631-67933650 None:intergenic 15.0%
!! AAAAAATGCATAGTTGAAAA+TGG - chr6.3:67933234-67933253 MS.gene022190:CDS 20.0%
!! AATATTCTGTATCTTCTATA+TGG - chr6.3:67933856-67933875 MS.gene022190:CDS 20.0%
!!! AATGATGATTTTGTGATTAT+TGG + chr6.3:67933582-67933601 None:intergenic 20.0%
!!! GAAATTTTCATTTGTAGAAT+TGG - chr6.3:67933653-67933672 MS.gene022190:CDS 20.0%
!!! TATTGAATTGGTTCAAAAAA+TGG - chr6.3:67933182-67933201 MS.gene022190:CDS 20.0%
! AAGAACAAGAAAAACAACAA+AGG - chr6.3:67932805-67932824 MS.gene022190:CDS 25.0%
! AATCATCATTGAGGATAATT+TGG - chr6.3:67933592-67933611 MS.gene022190:CDS 25.0%
! ATTATCCTAAGAGAATGATT+TGG + chr6.3:67933021-67933040 None:intergenic 25.0%
! CAAATTGATGAATCCTTATA+GGG - chr6.3:67934019-67934038 MS.gene022190:CDS 25.0%
! TAATCACAAAATCATCATTG+AGG - chr6.3:67933583-67933602 MS.gene022190:CDS 25.0%
! TAGTGATACCAAATCAATTT+AGG - chr6.3:67932848-67932867 MS.gene022190:CDS 25.0%
! TATGGTGACAAAAATTATGA+AGG - chr6.3:67933891-67933910 MS.gene022190:CDS 25.0%
! TCAAATTGATGAATCCTTAT+AGG - chr6.3:67934018-67934037 MS.gene022190:CDS 25.0%
! TCAATATGGTTGTATTGAAT+TGG - chr6.3:67933170-67933189 MS.gene022190:CDS 25.0%
! TTAGAAGCTCAAAAATCTTT+AGG - chr6.3:67933372-67933391 MS.gene022190:CDS 25.0%
! TTAGGATAATGATTCAAGAT+TGG - chr6.3:67933031-67933050 MS.gene022190:CDS 25.0%
! TTCATCAAATCAAGAGTAAT+TGG + chr6.3:67932877-67932896 None:intergenic 25.0%
!! TGATTTTATCAGCACTTAAT+TGG - chr6.3:67933334-67933353 MS.gene022190:CDS 25.0%
!! TTGAAAGAGATTCTTTCTTT+TGG - chr6.3:67933474-67933493 MS.gene022190:CDS 25.0%
!!! AAGATTTTTTTGACCAACAA+AGG + chr6.3:67933813-67933832 None:intergenic 25.0%
!!! TGAGAAAGCTTTAACTATTT+TGG - chr6.3:67933728-67933747 MS.gene022190:CDS 25.0%
AAAAGCTTCTTTACATTGCA+TGG - chr6.3:67933398-67933417 MS.gene022190:CDS 30.0%
AACAAGAAAAACAACAAAGG+TGG - chr6.3:67932808-67932827 MS.gene022190:CDS 30.0%
ACAGAATATTCTGTAGTCAA+AGG + chr6.3:67933846-67933865 None:intergenic 30.0%
ATATGGAAGATGTGCAAATA+TGG - chr6.3:67933873-67933892 MS.gene022190:CDS 30.0%
ATTGAAAGATGGTTCAATGA+AGG - chr6.3:67932943-67932962 MS.gene022190:CDS 30.0%
ATTGGACACCTAAATTGATT+TGG + chr6.3:67932859-67932878 None:intergenic 30.0%
CTATTATTGGTATTGCAAGT+TGG - chr6.3:67933957-67933976 MS.gene022190:CDS 30.0%
TGACTTAACAATTCCTTTGT+TGG - chr6.3:67933797-67933816 MS.gene022190:CDS 30.0%
TGATTCCAAATCATTCTCTT+AGG - chr6.3:67933013-67933032 MS.gene022190:CDS 30.0%
TGGTTCAAAAAATGGAGAAA+TGG - chr6.3:67933190-67933209 MS.gene022190:CDS 30.0%
TGTGTTGAGAATAGACAAAA+TGG - chr6.3:67933054-67933073 MS.gene022190:CDS 30.0%
TTCAATACTCTCTCTATCAT+AGG + chr6.3:67932929-67932948 None:intergenic 30.0%
TTCATTTGTAGAATTGGGTT+TGG - chr6.3:67933659-67933678 MS.gene022190:CDS 30.0%
! TGCTTTTCAGAAGCTATTAT+TGG - chr6.3:67933944-67933963 MS.gene022190:CDS 30.0%
! TTGAAGCATCAAGATGTTAA+GGG - chr6.3:67933429-67933448 MS.gene022190:CDS 30.0%
! TTTGAAGCATCAAGATGTTA+AGG - chr6.3:67933428-67933447 MS.gene022190:CDS 30.0%
! TTTTGAGCTTCTAATTGAAG+TGG + chr6.3:67933366-67933385 None:intergenic 30.0%
!! ATAGAGAGAGTATTGAAAGA+TGG - chr6.3:67932932-67932951 MS.gene022190:CDS 30.0%
AATGGAGTAATGAAAGTGAG+AGG - chr6.3:67933208-67933227 MS.gene022190:CDS 35.0%
CTTAACTCGAAAAAGAAGCT+CGG + chr6.3:67933130-67933149 None:intergenic 35.0%
CTTCTTTACATTGCATGGTT+TGG - chr6.3:67933403-67933422 MS.gene022190:CDS 35.0%
GCAAAAGGTTTGGATCAATA+TGG - chr6.3:67933156-67933175 MS.gene022190:CDS 35.0%
TAAGGAATCAGCAAAAGGTT+TGG - chr6.3:67933146-67933165 MS.gene022190:CDS 35.0%
! ATAGACAAAATGGTGTTGAG+AGG - chr6.3:67933064-67933083 MS.gene022190:CDS 35.0%
! GAAGCACTTATGGAAATTGA+AGG - chr6.3:67933513-67933532 MS.gene022190:CDS 35.0%
!! CTTACAACTTGATTTGTGAG+AGG + chr6.3:67932982-67933001 None:intergenic 35.0%
!! GAAACATGTAGAAGCACTTA+TGG - chr6.3:67933503-67933522 MS.gene022190:CDS 35.0%
!! TTGATAGAAGCACTTCAAGT+TGG - chr6.3:67933921-67933940 MS.gene022190:CDS 35.0%
ATTCCTGTTGACAATGTCAC+AGG + chr6.3:67932904-67932923 None:intergenic 40.0%
CAAAGGTGGAAAACCAAACA+TGG - chr6.3:67932822-67932841 MS.gene022190:CDS 40.0%
CGAGTTAAGGAATCAGCAAA+AGG - chr6.3:67933141-67933160 MS.gene022190:CDS 40.0%
GAATCCTTATAGGGCTGAAT+TGG - chr6.3:67934028-67934047 MS.gene022190:CDS 40.0%
GATTCCAACTCCAAGAATAC+CGG - chr6.3:67933086-67933105 MS.gene022190:CDS 40.0%
TCTTCCAATTCAGCCCTATA+AGG + chr6.3:67934035-67934054 None:intergenic 40.0%
!!! CGAGCTTCTTTTTCGAGTTA+AGG - chr6.3:67933128-67933147 MS.gene022190:CDS 40.0%
AGGTGGAAAACCAAACATGG+AGG - chr6.3:67932825-67932844 MS.gene022190:CDS 45.0%
ATCGAGCTAACCGGTATTCT+TGG + chr6.3:67933099-67933118 None:intergenic 45.0%
CTAACCGGTATTCTTGGAGT+TGG + chr6.3:67933093-67933112 None:intergenic 45.0%
GAAACATCGATCGAGCTAAC+CGG + chr6.3:67933108-67933127 None:intergenic 45.0%
GATCCTGTGACATTGTCAAC+AGG - chr6.3:67932898-67932917 MS.gene022190:CDS 45.0%
GGTATCACTACCTCCATGTT+TGG + chr6.3:67932838-67932857 None:intergenic 45.0%
!! TGGTGTTAGGTTGGGGAAGA+AGG - chr6.3:67932782-67932801 MS.gene022190:CDS 50.0%


Chromosome Type Strat End Strand Name
chr6.3 gene 67932781 67934097 67932781 ID=MS.gene022190
chr6.3 mRNA 67932781 67934097 67932781 ID=MS.gene022190.t1;Parent=MS.gene022190
chr6.3 exon 67932781 67934097 67932781 ID=MS.gene022190.t1.exon1;Parent=MS.gene022190.t1
chr6.3 CDS 67932781 67934097 67932781 ID=cds.MS.gene022190.t1;Parent=MS.gene022190.t1
Gene Sequence

>MS.gene022190

ATGGTGTTAGGTTGGGGAAGAAGGAAGAACAAGAAAAACAACAAAGGTGGAAAACCAAACATGGAGGTAGTGATACCAAATCAATTTAGGTGTCCAATTACTCTTGATTTGATGAAAGATCCTGTGACATTGTCAACAGGAATAACCTATGATAGAGAGAGTATTGAAAGATGGTTCAATGAAGGAAACTATACATGTCCTCTCACAAATCAAGTTGTAAGAAACTTTGATATGATTCCAAATCATTCTCTTAGGATAATGATTCAAGATTGGTGTGTTGAGAATAGACAAAATGGTGTTGAGAGGATTCCAACTCCAAGAATACCGGTTAGCTCGATCGATGTTTCCGAGCTTCTTTTTCGAGTTAAGGAATCAGCAAAAGGTTTGGATCAATATGGTTGTATTGAATTGGTTCAAAAAATGGAGAAATGGAGTAATGAAAGTGAGAGGAACAAAAAATGCATAGTTGAAAATGGAGCAACTAGTGCATTAGCTTTAGCATTTGATGCTTTTGCTAATGATTCTATTGAGAAAAATGTTATTGTTCTTGAAGTGATTTTATCAGCACTTAATTGGATGTTTCCACTTCAATTAGAAGCTCAAAAATCTTTAGGTTCAAAAGCTTCTTTACATTGCATGGTTTGGTTTTTGAAGCATCAAGATGTTAAGGGAAAAGAAAAAGCTATTATTGCATTGAAAGAGATTCTTTCTTTTGGTGATGAGAAACATGTAGAAGCACTTATGGAAATTGAAGGAGTTAATGAGCTTTTAATTGAGTTCATTAACAAGAGAATTAGTCCAATAATCACAAAATCATCATTGAGGATAATTTGGTACTTAGTTTCATCCAATTCTAATTTCAATGAAAAAATGAAATTTTCATTTGTAGAATTGGGTTTGGTTTCTTCAATTTTGCACATTCTTATTGACTCAGAAAAAAGCACTTGTGAGAAAGCTTTAACTATTTTGGATTCTTTATTAAGCTGTGACTTTGCACGAGAAACAGCTTATGAAAATGACTTAACAATTCCTTTGTTGGTCAAAAAAATCTTAAGAGTTTCACCTTTGACTACAGAATATTCTGTATCTTCTATATGGAAGATGTGCAAATATGGTGACAAAAATTATGAAGGAAAAGCTTTGATAGAAGCACTTCAAGTTGGTGCTTTTCAGAAGCTATTATTGGTATTGCAAGTTGGTTGTAGTGAAGAGACAAAAGACAAAGCAACTGAACTTCTCAAATTGATGAATCCTTATAGGGCTGAATTGGAAGATTGTGTTGATTCAGATTTCAAGAATCTTAAGAGATCATATTAA
Protein sequence

>MS.gene022190.t1

MVLGWGRRKNKKNNKGGKPNMEVVIPNQFRCPITLDLMKDPVTLSTGITYDRESIERWFNEGNYTCPLTNQVVRNFDMIPNHSLRIMIQDWCVENRQNGVERIPTPRIPVSSIDVSELLFRVKESAKGLDQYGCIELVQKMEKWSNESERNKKCIVENGATSALALAFDAFANDSIEKNVIVLEVILSALNWMFPLQLEAQKSLGSKASLHCMVWFLKHQDVKGKEKAIIALKEILSFGDEKHVEALMEIEGVNELLIEFINKRISPIITKSSLRIIWYLVSSNSNFNEKMKFSFVELGLVSSILHILIDSEKSTCEKALTILDSLLSCDFARETAYENDLTIPLLVKKILRVSPLTTEYSVSSIWKMCKYGDKNYEGKALIEALQVGAFQKLLLVLQVGCSEETKDKATELLKLMNPYRAELEDCVDSDFKNLKRSY