AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene042912

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene042912.t1 MTR_6g071340 97.129 418 12 0 21 438 1 418 0.0 837
MS.gene042912.t1 MTR_5g048050 95.890 438 18 0 1 438 1 438 0.0 807
MS.gene042912.t1 MTR_5g077510 48.791 455 203 11 1 438 1 442 9.94e-138 402
MS.gene042912.t1 MTR_3g065080 46.341 451 213 8 1 435 1 438 1.25e-127 376
MS.gene042912.t1 MTR_2g087350 34.901 404 230 11 22 415 3 383 1.80e-55 189
MS.gene042912.t1 MTR_1g056870 31.542 428 246 11 20 415 2 414 1.13e-54 188
MS.gene042912.t1 MTR_1g056880 31.308 428 247 11 20 415 2 414 1.45e-54 187
MS.gene042912.t1 MTR_7g106340 29.782 413 252 11 22 415 5 398 3.11e-50 176
MS.gene042912.t1 MTR_4g085720 32.020 406 242 10 20 416 9 389 1.00e-48 171
MS.gene042912.t1 MTR_1g056840 29.930 431 223 13 20 415 2 388 2.71e-46 165
MS.gene042912.t1 MTR_1g056910 30.348 402 253 11 22 414 3 386 5.00e-42 153
MS.gene042912.t1 MTR_8g092870 26.651 424 280 9 18 429 3 407 7.38e-41 150
MS.gene042912.t1 MTR_5g015210 28.354 395 248 8 25 415 67 430 1.57e-36 139
MS.gene042912.t1 MTR_3g095730 27.765 425 262 16 23 429 11 408 2.36e-36 138
MS.gene042912.t1 MTR_4g051515 27.670 412 258 15 22 415 3 392 1.50e-33 130
MS.gene042912.t1 MTR_4g485520 27.119 413 250 14 18 414 99 476 6.84e-29 118
MS.gene042912.t1 MTR_4g485520 27.119 413 250 14 18 414 267 644 1.29e-28 119
MS.gene042912.t1 MTR_1g017770 26.000 400 256 9 25 415 45 413 1.07e-27 114
MS.gene042912.t1 MTR_4g063800 27.700 426 234 17 24 422 254 632 1.42e-27 115
MS.gene042912.t1 MTR_3g096370 27.670 412 264 14 18 416 3 393 1.44e-25 108
MS.gene042912.t1 MTR_5g083030 25.694 432 250 10 21 417 289 684 3.34e-25 108
MS.gene042912.t1 MTR_7g078330 25.823 395 266 11 23 416 272 640 2.43e-24 106
MS.gene042912.t1 MTR_7g059405 26.536 407 250 16 24 417 263 633 3.21e-24 105
MS.gene042912.t1 MTR_1g094215 27.857 420 245 15 24 425 63 442 1.12e-22 100
MS.gene042912.t1 MTR_4g028960 51.948 77 37 0 20 96 275 351 1.30e-22 101
MS.gene042912.t1 MTR_1g094215 27.857 420 245 15 24 425 246 625 3.57e-22 99.8
MS.gene042912.t1 MTR_3g085610 41.346 104 53 2 11 114 268 363 3.31e-21 97.1
MS.gene042912.t1 MTR_7g053260 36.029 136 71 3 7 141 59 179 7.89e-21 94.7
MS.gene042912.t1 MTR_2g018010 52.857 70 33 0 23 92 290 359 1.23e-20 95.1
MS.gene042912.t1 MTR_3g078160 42.529 87 50 0 10 96 260 346 2.67e-20 94.0
MS.gene042912.t1 MTR_3g078160 42.529 87 50 0 10 96 260 346 2.69e-20 94.0
MS.gene042912.t1 MTR_3g078160 42.529 87 50 0 10 96 260 346 3.29e-20 93.6
MS.gene042912.t1 MTR_4g107010 52.857 70 33 0 26 95 281 350 3.92e-20 93.6
MS.gene042912.t1 MTR_8g080280 27.160 243 144 7 10 232 267 496 7.00e-19 89.7
MS.gene042912.t1 MTR_7g116600 50.617 81 36 2 26 106 79 155 1.06e-18 88.6
MS.gene042912.t1 MTR_5g034440 53.030 66 31 0 27 92 282 347 3.05e-18 87.8
MS.gene042912.t1 MTR_4g091880 47.222 72 37 1 21 91 1 72 2.75e-17 83.2
MS.gene042912.t1 MTR_4g091880 47.222 72 37 1 21 91 1 72 2.95e-17 83.6
MS.gene042912.t1 MTR_1g069845 44.286 70 39 0 23 92 122 191 7.07e-17 83.6
MS.gene042912.t1 MTR_7g097020 46.269 67 36 0 29 95 245 311 8.92e-17 83.2
MS.gene042912.t1 MTR_1g069845 44.286 70 39 0 23 92 243 312 1.20e-16 82.8
MS.gene042912.t1 MTR_1g069845 44.286 70 39 0 23 92 239 308 1.21e-16 82.8
MS.gene042912.t1 MTR_1g079450 39.394 99 53 3 20 118 58 149 6.20e-16 80.1
MS.gene042912.t1 MTR_8g077205 41.860 86 46 2 21 106 159 240 1.68e-15 79.3
MS.gene042912.t1 MTR_8g077205 41.860 86 46 2 21 106 271 352 2.10e-15 79.0
MS.gene042912.t1 MTR_3g466220 38.272 81 50 0 15 95 223 303 4.95e-15 77.8
MS.gene042912.t1 MTR_3g466220 38.272 81 50 0 15 95 202 282 5.34e-15 77.8
MS.gene042912.t1 MTR_5g020570 39.286 84 47 2 23 106 271 350 4.38e-14 75.1
MS.gene042912.t1 MTR_5g020570 39.286 84 47 2 23 106 286 365 5.15e-14 74.7
MS.gene042912.t1 MTR_7g117890 30.337 178 100 6 11 187 244 398 6.83e-14 74.3
MS.gene042912.t1 MTR_2g011140 43.750 64 36 0 28 91 18 81 6.89e-14 73.2
MS.gene042912.t1 MTR_8g103227 46.269 67 35 1 26 91 396 462 5.44e-13 71.6
MS.gene042912.t1 MTR_3g096370 62.791 43 16 0 18 60 3 45 9.71e-13 68.9
MS.gene042912.t1 MTR_2g096850 40.000 70 42 0 22 91 737 806 1.48e-12 70.1
MS.gene042912.t1 MTR_2g096850 40.000 70 42 0 22 91 586 655 1.49e-12 70.1
MS.gene042912.t1 MTR_3g115670 42.105 76 39 1 25 95 30 105 1.65e-12 70.1
MS.gene042912.t1 MTR_1g093965 43.750 64 33 1 38 101 1 61 2.62e-12 65.9
MS.gene042912.t1 MTR_1g090320 41.463 82 39 3 16 95 510 584 2.98e-12 69.3
MS.gene042912.t1 MTR_1g090320 41.463 82 39 3 16 95 512 586 3.06e-12 69.3
MS.gene042912.t1 MTR_7g077780 39.394 66 40 0 26 91 827 892 4.11e-12 68.9
MS.gene042912.t1 MTR_1g093995 43.750 64 33 1 38 101 1 61 5.66e-12 65.1
MS.gene042912.t1 MTR_3g008270 45.455 66 35 1 26 91 731 795 6.63e-12 68.2
MS.gene042912.t1 MTR_5g032010 37.313 67 42 0 25 91 732 798 1.18e-11 67.4
MS.gene042912.t1 MTR_1g100820 37.879 66 41 0 26 91 647 712 1.73e-11 66.6
MS.gene042912.t1 MTR_1g100820 37.879 66 41 0 26 91 649 714 1.76e-11 66.6
MS.gene042912.t1 MTR_7g005940 39.726 73 41 2 25 95 595 666 6.89e-11 65.1
MS.gene042912.t1 MTR_7g005940 39.726 73 41 2 25 95 595 666 7.27e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene042912.t1 AT5G37490 43.665 442 230 6 5 438 5 435 1.20e-113 340
MS.gene042912.t1 AT1G66160 41.981 424 219 9 21 438 29 431 5.32e-110 331
MS.gene042912.t1 AT1G66160 39.623 424 213 10 21 438 29 415 1.99e-97 298
MS.gene042912.t1 AT3G02840 40.173 346 194 8 100 438 40 379 5.07e-74 237
MS.gene042912.t1 AT2G35930 33.414 413 237 13 16 415 3 390 2.12e-56 192
MS.gene042912.t1 AT1G49780 31.358 405 257 7 20 417 9 399 2.29e-48 171
MS.gene042912.t1 AT3G19380 30.789 393 245 10 20 403 9 383 7.00e-46 164
MS.gene042912.t1 AT3G11840 29.099 433 254 12 22 414 7 426 3.12e-41 152
MS.gene042912.t1 AT3G52450 45.652 138 67 4 20 155 2 133 3.00e-34 133
MS.gene042912.t1 AT5G09800 27.295 403 257 13 25 416 11 388 4.42e-32 126
MS.gene042912.t1 AT5G64660 27.603 413 269 13 18 416 3 399 1.87e-30 122
MS.gene042912.t1 AT3G49810 26.847 406 254 11 25 422 64 434 3.86e-30 121
MS.gene042912.t1 AT5G65920 27.094 406 253 11 25 422 60 430 4.40e-29 119
MS.gene042912.t1 AT5G65920 27.094 406 253 11 25 422 60 430 4.40e-29 119
MS.gene042912.t1 AT3G18710 25.060 415 261 15 23 416 10 395 1.24e-27 114
MS.gene042912.t1 AT3G54850 27.561 410 246 14 24 417 247 621 8.91e-26 110
MS.gene042912.t1 AT2G28830 27.160 405 252 14 23 413 182 557 5.48e-25 108
MS.gene042912.t1 AT1G71020 26.265 415 270 13 12 416 82 470 9.04e-25 106
MS.gene042912.t1 AT1G23030 27.644 416 254 16 12 416 228 607 1.52e-24 107
MS.gene042912.t1 AT1G71020 26.265 415 270 13 12 416 230 618 1.83e-24 106
MS.gene042912.t1 AT3G46510 25.176 425 271 16 3 414 235 625 2.83e-22 100
MS.gene042912.t1 AT5G42340 26.587 252 149 5 14 232 279 527 9.58e-21 95.5
MS.gene042912.t1 AT5G01830 51.389 72 35 0 25 96 274 345 3.08e-20 94.0
MS.gene042912.t1 AT1G29340 50.704 71 35 0 23 93 303 373 2.78e-19 90.9
MS.gene042912.t1 AT1G24330 33.533 167 90 6 2 153 246 406 1.04e-18 89.4
MS.gene042912.t1 AT1G24330 33.533 167 90 6 2 153 246 406 1.04e-18 89.4
MS.gene042912.t1 AT1G27910 38.596 114 62 3 14 125 268 375 1.17e-18 89.4
MS.gene042912.t1 AT1G67530 35.606 132 75 3 2 127 243 370 2.10e-18 88.6
MS.gene042912.t1 AT1G67530 35.606 132 75 3 2 127 243 370 2.10e-18 88.6
MS.gene042912.t1 AT1G67530 35.606 132 75 3 2 127 243 370 2.10e-18 88.6
MS.gene042912.t1 AT1G67530 35.606 132 75 3 2 127 243 370 2.11e-18 88.2
MS.gene042912.t1 AT3G07360 45.570 79 40 1 23 101 72 147 1.04e-17 85.5
MS.gene042912.t1 AT1G10560 32.414 145 84 2 31 164 294 435 1.90e-17 85.5
MS.gene042912.t1 AT3G54790 43.421 76 43 0 23 98 200 275 9.26e-17 83.2
MS.gene042912.t1 AT1G01680 37.931 87 49 1 9 95 222 303 1.16e-16 80.9
MS.gene042912.t1 AT3G54790 43.421 76 43 0 23 98 236 311 1.24e-16 82.8
MS.gene042912.t1 AT3G54790 43.421 76 43 0 23 98 236 311 1.24e-16 82.8
MS.gene042912.t1 AT4G21350 47.222 72 37 1 21 91 1 72 3.22e-16 80.5
MS.gene042912.t1 AT1G60190 32.215 149 83 4 27 164 280 421 2.94e-15 78.6
MS.gene042912.t1 AT4G36550 37.500 72 45 0 24 95 218 289 1.82e-14 76.3
MS.gene042912.t1 AT3G61390 43.939 66 37 0 26 91 279 344 3.80e-14 73.9
MS.gene042912.t1 AT3G61390 43.939 66 37 0 26 91 354 419 5.21e-14 73.9
MS.gene042912.t1 AT2G23140 36.082 97 58 1 23 119 228 320 1.48e-13 73.6
MS.gene042912.t1 AT2G23140 36.082 97 58 1 23 119 228 320 1.48e-13 73.6
MS.gene042912.t1 AT2G23140 36.082 97 58 1 23 119 231 323 1.59e-13 73.2
MS.gene042912.t1 AT3G49060 42.424 66 38 0 26 91 726 791 1.69e-13 73.2
MS.gene042912.t1 AT3G49060 42.424 66 38 0 26 91 736 801 1.76e-13 73.2
MS.gene042912.t1 AT3G49060 42.424 66 38 0 26 91 703 768 1.81e-13 73.2
MS.gene042912.t1 AT1G01660 38.571 70 43 0 26 95 499 568 1.82e-13 72.8
MS.gene042912.t1 AT1G01660 38.571 70 43 0 26 95 498 567 1.83e-13 72.8
MS.gene042912.t1 AT2G23140 36.082 97 58 1 23 119 39 131 1.97e-13 72.8
MS.gene042912.t1 AT2G23140 36.082 97 58 1 23 119 39 131 1.97e-13 72.8
MS.gene042912.t1 AT2G45920 42.424 66 38 0 26 91 326 391 2.20e-13 72.0
MS.gene042912.t1 AT1G56040 38.824 85 51 1 7 90 334 418 1.31e-12 69.7
MS.gene042912.t1 AT5G67340 36.986 73 46 0 23 95 238 310 1.48e-12 70.1
MS.gene042912.t1 AT5G67340 36.986 73 46 0 23 95 238 310 1.48e-12 70.1
MS.gene042912.t1 AT1G56030 43.077 65 37 0 26 90 324 388 1.99e-12 68.9
MS.gene042912.t1 AT5G51270 40.845 71 41 1 26 96 736 805 2.23e-12 69.7
MS.gene042912.t1 AT5G51270 40.845 71 41 1 26 96 736 805 2.23e-12 69.7
MS.gene042912.t1 AT5G65500 41.333 75 41 1 17 91 718 789 2.46e-12 69.7
MS.gene042912.t1 AT5G65500 41.333 75 41 1 17 91 710 781 2.52e-12 69.3
MS.gene042912.t1 AT1G01670 40.909 66 39 0 26 91 211 276 1.17e-11 65.5
MS.gene042912.t1 AT1G01670 40.909 66 39 0 26 91 295 360 1.99e-11 65.9
MS.gene042912.t1 AT1G01670 40.909 66 39 0 26 91 295 360 1.99e-11 65.9
MS.gene042912.t1 AT5G18340 32.110 109 67 3 12 120 61 162 4.58e-11 65.1
MS.gene042912.t1 AT5G18320 30.709 127 82 4 23 146 70 193 6.39e-11 64.7

Find 49 sgRNAs with CRISPR-Local

Find 65 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAGAAAGCTTTAACTATTT+TGG 0.084598 6.1:-64600997 MS.gene042912:CDS
TCAAATTGATGAATCCTTAT+AGG 0.188148 6.1:-64600707 MS.gene042912:CDS
AATCATCATTGATGATAATT+TGG 0.197692 6.1:-64601133 MS.gene042912:CDS
TTCATCAAATCAAGAGTAAT+TGG 0.206017 6.1:+64601851 None:intergenic
AGTATTCAGTTTCTACTATA+TGG 0.256281 6.1:-64600869 MS.gene042912:CDS
CTTCTTTACATTGCATGATT+TGG 0.259797 6.1:-64601322 MS.gene042912:CDS
CAAATTGATGAATCCTTATA+GGG 0.287604 6.1:-64600706 MS.gene042912:CDS
AAGCTCAGTTGCTTTATCTT+TGG 0.291597 6.1:+64600731 None:intergenic
TGATTCCAAATCATTCTCTT+AGG 0.293043 6.1:-64601712 MS.gene042912:CDS
TTAAAAGAGATTCTTTCTTT+TGG 0.306303 6.1:-64601251 MS.gene042912:CDS
TGACTTAACAATTCCTTTGT+TGG 0.326123 6.1:-64600928 MS.gene042912:CDS
ATCGAGCTAACCGGTATTCT+TGG 0.327497 6.1:+64601629 None:intergenic
CTTACAACTTGATTTGTTAG+AGG 0.334989 6.1:+64601746 None:intergenic
TCTTCCAATTCAGCCCTATA+AGG 0.335630 6.1:+64600693 None:intergenic
ATTGGACACCTAAATTGATT+TGG 0.335859 6.1:+64601869 None:intergenic
GGTATCACTACCTCCATGTT+TGG 0.338704 6.1:+64601890 None:intergenic
GAAACATGTAGAAGCACTTA+TGG 0.341465 6.1:-64601222 MS.gene042912:CDS
TAGTGATACCAAATCAATTT+AGG 0.346434 6.1:-64601877 MS.gene042912:CDS
GAATCCTTATAGGGCTGAAT+TGG 0.347326 6.1:-64600697 MS.gene042912:CDS
TTTGAAGCATCAAGATGTTA+AGG 0.349669 6.1:-64601297 MS.gene042912:CDS
GCAAAAGGTTTGGATCAATA+TGG 0.357148 6.1:-64601569 MS.gene042912:CDS
ATATGGAAGATGTGCAAATA+TGG 0.363736 6.1:-64600852 MS.gene042912:CDS
TTCATTTGTAGAATTGGGTT+TGG 0.379894 6.1:-64601066 MS.gene042912:CDS
TTCAATACTCTCTCTATCAT+AGG 0.380174 6.1:+64601799 None:intergenic
TGGTGTTAGGTTGGGGAAGA+AGG 0.382817 6.1:-64601943 MS.gene042912:CDS
ATTATCCTAAGAGAATGATT+TGG 0.383748 6.1:+64601707 None:intergenic
TCAATATGGTTGTATTGAAT+TGG 0.405007 6.1:-64601555 MS.gene042912:CDS
TAAGGAATCAGCAAAAGGTT+TGG 0.411626 6.1:-64601579 MS.gene042912:CDS
TTGAAGCATCAAGATGTTAA+GGG 0.415181 6.1:-64601296 MS.gene042912:CDS
TTAGGATAATGATTCAAGAT+TGG 0.432186 6.1:-64601694 MS.gene042912:CDS
GAAACATCGATCGAGCTAAC+CGG 0.450457 6.1:+64601620 None:intergenic
CGAGTTAAGGAATCAGCAAA+AGG 0.455195 6.1:-64601584 MS.gene042912:CDS
GATCCTGTGACATTGTCAAC+AGG 0.477744 6.1:-64601827 MS.gene042912:CDS
TTTAAGATGGTGTTAGGTTG+GGG 0.480803 6.1:-64601950 None:intergenic
TGTGTTGAGAATAGACAAAA+TGG 0.498744 6.1:-64601671 MS.gene042912:CDS
ATTGAAAGATGGTTCAATGA+AGG 0.518770 6.1:-64601782 MS.gene042912:CDS
ATAGAGAGAGTATTGAAAGA+TGG 0.521682 6.1:-64601793 MS.gene042912:CDS
CTATTATTGGTATTGCAAGT+TGG 0.529827 6.1:-64600768 MS.gene042912:CDS
GAAGCACTTATGGAAATTGA+AGG 0.535964 6.1:-64601212 MS.gene042912:CDS
ATTCCTGTTGACAATGTCAC+AGG 0.541677 6.1:+64601824 None:intergenic
CAAAGGTGGAAAACCAAACA+TGG 0.558197 6.1:-64601903 MS.gene042912:CDS
TTGATTGAAGCACTTCAAGT+TGG 0.561935 6.1:-64600804 MS.gene042912:CDS
GATTCCTACTCCAAGAATAC+CGG 0.564162 6.1:-64601639 MS.gene042912:CDS
ACTGAATACTCTGTGGTCAA+AGG 0.567201 6.1:+64600882 None:intergenic
CTAACCGGTATTCTTGGAGT+AGG 0.590630 6.1:+64601635 None:intergenic
AATGGAGTAATGAAAGTGAG+AGG 0.609225 6.1:-64601517 MS.gene042912:CDS
ATAGACAAAATGGTGTTGAG+AGG 0.615873 6.1:-64601661 MS.gene042912:CDS
AGTAGAAACTGAATACTCTG+TGG 0.711233 6.1:+64600875 None:intergenic
AGGTGGAAAACCAAACATGG+AGG 0.758131 6.1:-64601900 MS.gene042912:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTTTCATTTGTAGAATT+GGG - chr6.1:64601523-64601542 MS.gene042912:CDS 15.0%
!!! TTTTTCATTGAAATTAGAAT+TGG + chr6.1:64601500-64601519 None:intergenic 15.0%
!!! AATCATCATTGATGATAATT+TGG - chr6.1:64601461-64601480 MS.gene042912:CDS 20.0%
!!! AATGATGATTTTGTGATTAT+TGG + chr6.1:64601451-64601470 None:intergenic 20.0%
!!! GAAATTTTCATTTGTAGAAT+TGG - chr6.1:64601522-64601541 MS.gene042912:CDS 20.0%
!!! TATTGAATTGGTTCAAAAAA+TGG - chr6.1:64601051-64601070 MS.gene042912:CDS 20.0%
!!! TTAAAAGAGATTCTTTCTTT+TGG - chr6.1:64601343-64601362 MS.gene042912:CDS 20.0%
! AAAAAATGCATAGTTGAGAA+TGG - chr6.1:64601103-64601122 MS.gene042912:CDS 25.0%
! AAGAACAAGAAAAACAACAA+AGG - chr6.1:64600674-64600693 MS.gene042912:CDS 25.0%
! AGTATTCAGTTTCTACTATA+TGG - chr6.1:64601725-64601744 MS.gene042912:CDS 25.0%
! ATTATCCTAAGAGAATGATT+TGG + chr6.1:64600890-64600909 None:intergenic 25.0%
! CAAATTGATGAATCCTTATA+GGG - chr6.1:64601888-64601907 MS.gene042912:CDS 25.0%
! TAGTGATACCAAATCAATTT+AGG - chr6.1:64600717-64600736 MS.gene042912:CDS 25.0%
! TATGGTCACAAAAATTATGA+AGG - chr6.1:64601760-64601779 MS.gene042912:CDS 25.0%
! TCAAATTGATGAATCCTTAT+AGG - chr6.1:64601887-64601906 MS.gene042912:CDS 25.0%
! TCAATATGGTTGTATTGAAT+TGG - chr6.1:64601039-64601058 MS.gene042912:CDS 25.0%
! TTAGAAGCTCAAAAATCTTT+AGG - chr6.1:64601241-64601260 MS.gene042912:CDS 25.0%
! TTAGGATAATGATTCAAGAT+TGG - chr6.1:64600900-64600919 MS.gene042912:CDS 25.0%
! TTCATCAAATCAAGAGTAAT+TGG + chr6.1:64600746-64600765 None:intergenic 25.0%
!! TGATTTTATCTGCACTTAAT+TGG - chr6.1:64601203-64601222 MS.gene042912:CDS 25.0%
!!! AAGATTTTTTTGACCAACAA+AGG + chr6.1:64601682-64601701 None:intergenic 25.0%
!!! TGAGAAAGCTTTAACTATTT+TGG - chr6.1:64601597-64601616 MS.gene042912:CDS 25.0%
AACAAGAAAAACAACAAAGG+TGG - chr6.1:64600677-64600696 MS.gene042912:CDS 30.0%
ATATGGAAGATGTGCAAATA+TGG - chr6.1:64601742-64601761 MS.gene042912:CDS 30.0%
ATTGAAAGATGGTTCAATGA+AGG - chr6.1:64600812-64600831 MS.gene042912:CDS 30.0%
ATTGGACACCTAAATTGATT+TGG + chr6.1:64600728-64600747 None:intergenic 30.0%
CTATTATTGGTATTGCAAGT+TGG - chr6.1:64601826-64601845 MS.gene042912:CDS 30.0%
CTTCTTTACATTGCATGATT+TGG - chr6.1:64601272-64601291 MS.gene042912:CDS 30.0%
TGACTTAACAATTCCTTTGT+TGG - chr6.1:64601666-64601685 MS.gene042912:CDS 30.0%
TGATTCCAAATCATTCTCTT+AGG - chr6.1:64600882-64600901 MS.gene042912:CDS 30.0%
TGGTTCAAAAAATGGAGAAA+TGG - chr6.1:64601059-64601078 MS.gene042912:CDS 30.0%
TGTGTTGAGAATAGACAAAA+TGG - chr6.1:64600923-64600942 MS.gene042912:CDS 30.0%
TTCAATACTCTCTCTATCAT+AGG + chr6.1:64600798-64600817 None:intergenic 30.0%
TTCATTTGTAGAATTGGGTT+TGG - chr6.1:64601528-64601547 MS.gene042912:CDS 30.0%
! TGCTTTTCAGAAGCTATTAT+TGG - chr6.1:64601813-64601832 MS.gene042912:CDS 30.0%
! TTGAAGCATCAAGATGTTAA+GGG - chr6.1:64601298-64601317 MS.gene042912:CDS 30.0%
! TTTGAAGCATCAAGATGTTA+AGG - chr6.1:64601297-64601316 MS.gene042912:CDS 30.0%
! TTTTGAGCTTCTAATTGAAG+TGG + chr6.1:64601235-64601254 None:intergenic 30.0%
!! ATAGAGAGAGTATTGAAAGA+TGG - chr6.1:64600801-64600820 MS.gene042912:CDS 30.0%
!! CTTACAACTTGATTTGTTAG+AGG + chr6.1:64600851-64600870 None:intergenic 30.0%
AATGGAGTAATGAAAGTGAG+AGG - chr6.1:64601077-64601096 MS.gene042912:CDS 35.0%
AGTAGAAACTGAATACTCTG+TGG + chr6.1:64601722-64601741 None:intergenic 35.0%
CTTAACTCGAAAAAGAAGCT+CGG + chr6.1:64600999-64601018 None:intergenic 35.0%
GCAAAAGGTTTGGATCAATA+TGG - chr6.1:64601025-64601044 MS.gene042912:CDS 35.0%
TAAGGAATCAGCAAAAGGTT+TGG - chr6.1:64601015-64601034 MS.gene042912:CDS 35.0%
! AAGCTCAGTTGCTTTATCTT+TGG + chr6.1:64601866-64601885 None:intergenic 35.0%
! ATAGACAAAATGGTGTTGAG+AGG - chr6.1:64600933-64600952 MS.gene042912:CDS 35.0%
! GAAGCACTTATGGAAATTGA+AGG - chr6.1:64601382-64601401 MS.gene042912:CDS 35.0%
! TTGATTGAAGCACTTCAAGT+TGG - chr6.1:64601790-64601809 MS.gene042912:CDS 35.0%
!! GAAACATGTAGAAGCACTTA+TGG - chr6.1:64601372-64601391 MS.gene042912:CDS 35.0%
ACTGAATACTCTGTGGTCAA+AGG + chr6.1:64601715-64601734 None:intergenic 40.0%
ATTCCTGTTGACAATGTCAC+AGG + chr6.1:64600773-64600792 None:intergenic 40.0%
CAAAGGTGGAAAACCAAACA+TGG - chr6.1:64600691-64600710 MS.gene042912:CDS 40.0%
CGAGTTAAGGAATCAGCAAA+AGG - chr6.1:64601010-64601029 MS.gene042912:CDS 40.0%
GAATCCTTATAGGGCTGAAT+TGG - chr6.1:64601897-64601916 MS.gene042912:CDS 40.0%
GATTCCTACTCCAAGAATAC+CGG - chr6.1:64600955-64600974 MS.gene042912:CDS 40.0%
TCTTCCAATTCAGCCCTATA+AGG + chr6.1:64601904-64601923 None:intergenic 40.0%
!!! CGAGCTTCTTTTTCGAGTTA+AGG - chr6.1:64600997-64601016 MS.gene042912:CDS 40.0%
AGGTGGAAAACCAAACATGG+AGG - chr6.1:64600694-64600713 MS.gene042912:CDS 45.0%
ATCGAGCTAACCGGTATTCT+TGG + chr6.1:64600968-64600987 None:intergenic 45.0%
CTAACCGGTATTCTTGGAGT+AGG + chr6.1:64600962-64600981 None:intergenic 45.0%
GAAACATCGATCGAGCTAAC+CGG + chr6.1:64600977-64600996 None:intergenic 45.0%
GATCCTGTGACATTGTCAAC+AGG - chr6.1:64600767-64600786 MS.gene042912:CDS 45.0%
GGTATCACTACCTCCATGTT+TGG + chr6.1:64600707-64600726 None:intergenic 45.0%
!! TGGTGTTAGGTTGGGGAAGA+AGG - chr6.1:64600651-64600670 MS.gene042912:CDS 50.0%


Chromosome Type Strat End Strand Name
chr6.1 gene 64600650 64601966 64600650 ID=MS.gene042912
chr6.1 mRNA 64600650 64601966 64600650 ID=MS.gene042912.t1;Parent=MS.gene042912
chr6.1 exon 64600650 64601966 64600650 ID=MS.gene042912.t1.exon1;Parent=MS.gene042912.t1
chr6.1 CDS 64600650 64601966 64600650 ID=cds.MS.gene042912.t1;Parent=MS.gene042912.t1
Gene Sequence

>MS.gene042912

ATGGTGTTAGGTTGGGGAAGAAGGAAGAACAAGAAAAACAACAAAGGTGGAAAACCAAACATGGAGGTAGTGATACCAAATCAATTTAGGTGTCCAATTACTCTTGATTTGATGAAAGATCCTGTGACATTGTCAACAGGAATAACCTATGATAGAGAGAGTATTGAAAGATGGTTCAATGAAGGAAACTATACATGTCCTCTAACAAATCAAGTTGTAAGAAACTTTGATATGATTCCAAATCATTCTCTTAGGATAATGATTCAAGATTGGTGTGTTGAGAATAGACAAAATGGTGTTGAGAGGATTCCTACTCCAAGAATACCGGTTAGCTCGATCGATGTTTCCGAGCTTCTTTTTCGAGTTAAGGAATCAGCAAAAGGTTTGGATCAATATGGTTGTATTGAATTGGTTCAAAAAATGGAGAAATGGAGTAATGAAAGTGAGAGGAACAAAAAATGCATAGTTGAGAATGGAGCAACTAGTGCATTAGCTTTAGCATTTGATGCTTTTGCTAATGATTCTATTGAGAAAAATGTTCTTGTTCTTGAAGTGATTTTATCTGCACTTAATTGGATGTTTCCACTTCAATTAGAAGCTCAAAAATCTTTAGGTTCAAAAGCTTCTTTACATTGCATGATTTGGTTTTTGAAGCATCAAGATGTTAAGGGAAAAGAAAAAGCTATTATTGCATTAAAAGAGATTCTTTCTTTTGGTGATGAGAAACATGTAGAAGCACTTATGGAAATTGAAGGAGTTAATGAGCTTTTAATTGAGTTCATTAACAAGAGAATTAGTCCAATAATCACAAAATCATCATTGATGATAATTTGGTACTTAGTTTCATCCAATTCTAATTTCAATGAAAAAATGAAATTTTCATTTGTAGAATTGGGTTTGGTTTCTTCAATTTTGCACATTCTTATTGACTCAGAAAAAAGCACTTGTGAGAAAGCTTTAACTATTTTGGATTCTCTATTAAGCTGTGACTTTGCAAGAGAAACAGCTTATGAAAATGACTTAACAATTCCTTTGTTGGTCAAAAAAATCTTGAGAGTTTCACCTTTGACCACAGAGTATTCAGTTTCTACTATATGGAAGATGTGCAAATATGGTCACAAAAATTATGAAGGAAAAGCTTTGATTGAAGCACTTCAAGTTGGTGCTTTTCAGAAGCTATTATTGGTATTGCAAGTTGGTTGTAATGATGAGACCAAAGATAAAGCAACTGAGCTTCTCAAATTGATGAATCCTTATAGGGCTGAATTGGAAGATTGTGTTGATTCAGATTTCAAGAATCTTAAGAGATCATATTAA
Protein sequence

>MS.gene042912.t1

MVLGWGRRKNKKNNKGGKPNMEVVIPNQFRCPITLDLMKDPVTLSTGITYDRESIERWFNEGNYTCPLTNQVVRNFDMIPNHSLRIMIQDWCVENRQNGVERIPTPRIPVSSIDVSELLFRVKESAKGLDQYGCIELVQKMEKWSNESERNKKCIVENGATSALALAFDAFANDSIEKNVLVLEVILSALNWMFPLQLEAQKSLGSKASLHCMIWFLKHQDVKGKEKAIIALKEILSFGDEKHVEALMEIEGVNELLIEFINKRISPIITKSSLMIIWYLVSSNSNFNEKMKFSFVELGLVSSILHILIDSEKSTCEKALTILDSLLSCDFARETAYENDLTIPLLVKKILRVSPLTTEYSVSTIWKMCKYGHKNYEGKALIEALQVGAFQKLLLVLQVGCNDETKDKATELLKLMNPYRAELEDCVDSDFKNLKRSY