AlfalfaGEDB | MS.gene93972

M. sativa cultivar XinJiangDaYe / MS.gene93972

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0070647 GO:0071704 GO:0140096 GO:1901564
PFAM: PF04564.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene93972.t1	RHN52322.1	97.5	438	11	0	1	438	1	438	1.60E-245	858.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene93972.t1	Q5PNY6	43.7	442	230	6	5	438	5	435	3.9e-94	346.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene93972.t1	A0A396HG48	97.5	438	11	0	1	438	1	438	1.2e-245	858.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049283	MS.gene93972	0.807826	4.18E-50	-1.69E-46
MS.gene04998	MS.gene93972	0.863387	2.58E-64	-1.69E-46
MS.gene050359	MS.gene93972	0.803077	4.14E-49	-1.69E-46
MS.gene050414	MS.gene93972	0.825008	5.92E-54	-1.69E-46
MS.gene051226	MS.gene93972	0.845162	4.82E-59	-1.69E-46
MS.gene051699	MS.gene93972	0.812055	5.14E-51	-1.69E-46
MS.gene052016	MS.gene93972	0.830688	2.55E-55	-1.69E-46
MS.gene052296	MS.gene93972	0.814681	1.36E-51	-1.69E-46
MS.gene052493	MS.gene93972	0.801849	7.41E-49	-1.69E-46
MS.gene052533	MS.gene93972	0.825547	4.42E-54	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene007121	MS.gene93972	PPI
MS.gene008306	MS.gene93972	PPI
MS.gene017373	MS.gene93972	PPI
MS.gene025667	MS.gene93972	PPI
MS.gene034751	MS.gene93972	PPI
MS.gene034753	MS.gene93972	PPI
MS.gene042912	MS.gene93972	PPI
MS.gene048677	MS.gene93972	PPI
MS.gene04998	MS.gene93972	PPI
MS.gene061543	MS.gene93972	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene93972.t1	MTR_5g048050	96.347	438	16	0	1	438	1	438	0.0	867
MS.gene93972.t1	MTR_6g071340	97.608	418	10	0	21	438	1	418	0.0	840
MS.gene93972.t1	MTR_5g077510	48.791	455	203	11	1	438	1	442	3.38e-138	403
MS.gene93972.t1	MTR_3g065080	46.341	451	213	8	1	435	1	438	1.53e-127	376
MS.gene93972.t1	MTR_2g087350	34.901	404	230	11	22	415	3	383	2.29e-55	189
MS.gene93972.t1	MTR_1g056870	31.542	428	246	11	20	415	2	414	5.24e-55	189
MS.gene93972.t1	MTR_1g056880	31.308	428	247	11	20	415	2	414	8.13e-55	188
MS.gene93972.t1	MTR_7g106340	29.782	413	252	11	22	415	5	398	2.07e-50	176
MS.gene93972.t1	MTR_4g085720	32.020	406	242	10	20	416	9	389	2.85e-49	173
MS.gene93972.t1	MTR_1g056840	29.930	431	223	13	20	415	2	388	2.20e-46	165

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene93972.t1	AT5G37490	43.665	442	230	6	5	438	5	435	6.93e-113	338
MS.gene93972.t1	AT1G66160	41.745	424	220	9	21	438	29	431	5.40e-109	328
MS.gene93972.t1	AT1G66160	39.387	424	214	10	21	438	29	415	2.19e-96	296
MS.gene93972.t1	AT3G02840	39.884	346	195	8	100	438	40	379	1.40e-72	233
MS.gene93972.t1	AT2G35930	33.172	413	238	13	16	415	3	390	2.33e-56	192
MS.gene93972.t1	AT1G49780	31.436	404	256	7	20	416	9	398	8.03e-49	172
MS.gene93972.t1	AT3G19380	30.534	393	246	10	20	403	9	383	5.63e-46	164
MS.gene93972.t1	AT3G11840	29.128	436	250	13	22	414	7	426	1.20e-40	151
MS.gene93972.t1	AT3G52450	45.652	138	67	4	20	155	2	133	3.63e-34	132
MS.gene93972.t1	AT5G09800	27.047	403	258	13	25	416	11	388	6.65e-32	126

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Find 53 sgRNAs with CRISPR-Local

Find 66 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTGTTTAAGATGGTGTT+AGG	0.352803	6.2:-73814497	None:intergenic
AAGTTCAGTTGCTTTATCTT+TGG	0.334075	6.2:+73813272	None:intergenic
AATCATCATTGAGGATAATT+TGG	0.200592	6.2:-73813674	MS.gene93972:CDS
AATGGAGTAATGAAAGTGAG+AGG	0.609225	6.2:-73814058	MS.gene93972:CDS
ACTGAATACTCTGTGGTCAA+AGG	0.567201	6.2:+73813423	None:intergenic
AGGTGGAAAACCAAACATGG+AGG	0.758131	6.2:-73814441	MS.gene93972:CDS
AGTAGAAACTGAATACTCTG+TGG	0.711233	6.2:+73813416	None:intergenic
AGTATTCAGTTTCTACTATA+TGG	0.256281	6.2:-73813410	MS.gene93972:CDS
ATAGACAAAATGGTGTTGAG+AGG	0.615873	6.2:-73814202	MS.gene93972:CDS
ATAGAGAGAGTATTGAAAGA+TGG	0.521682	6.2:-73814334	MS.gene93972:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACAAGAAAAACAACAAAGG+TGG	-	chr6.2:73813218-73813237	MS.gene93972:CDS	30.0%
ATATGGAAGATGTGCAAATA+TGG	-	chr6.2:73814283-73814302	MS.gene93972:CDS	30.0%
ATTGAAAGATGGTTCAATGA+AGG	-	chr6.2:73813353-73813372	MS.gene93972:CDS	30.0%
ATTGGACACCTAAATTGATT+TGG	+	chr6.2:73813269-73813288	None:intergenic	30.0%
CTATTATTGGTATTGCAAGT+TGG	-	chr6.2:73814367-73814386	MS.gene93972:CDS	30.0%
CTTCTTTACATTGCATGATT+TGG	-	chr6.2:73813813-73813832	MS.gene93972:CDS	30.0%
TGACTTAACAATTCCTTTGT+TGG	-	chr6.2:73814207-73814226	MS.gene93972:CDS	30.0%
TGATTCCAAATCATTCTCTT+AGG	-	chr6.2:73813423-73813442	MS.gene93972:CDS	30.0%
TGGTTCAAAAAATGGAGAAA+TGG	-	chr6.2:73813600-73813619	MS.gene93972:CDS	30.0%
TGTGTTGAGAATAGACAAAA+TGG	-	chr6.2:73813464-73813483	MS.gene93972:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6.2	gene	73813191	73814507	73813191	ID=MS.gene93972
chr6.2	mRNA	73813191	73814507	73813191	ID=MS.gene93972.t1;Parent=MS.gene93972
chr6.2	exon	73813191	73814507	73813191	ID=MS.gene93972.t1.exon1;Parent=MS.gene93972.t1
chr6.2	CDS	73813191	73814507	73813191	ID=cds.MS.gene93972.t1;Parent=MS.gene93972.t1

Gene Sequence

>MS.gene93972

ATGGTGTTAGGTTGGGGAAGAAGGAAGAACAAGAAAAACAACAAAGGTGGAAAACCAAACATGGAGGTAGTGATACCAAATCAATTTAGGTGTCCAATTACTCTTGATTTGATGAAAGATCCTGTGACATTGTCAACAGGAATAACCTATGATAGAGAGAGTATTGAAAGATGGTTCAATGAAGGAAACTATACATGTCCTCTCACAAATCAAGTTGTAAGAAACTTTGATATGATTCCAAATCATTCTCTTAGGATAATGATTCAAGATTGGTGTGTTGAGAATAGACAAAATGGTGTTGAGAGGATTCCTACTCCAAGAATACCGGTTAGCTCGATCGATGTTTCCGAGCTTCTTTTTCGAGTTAAGGAATCAGCAAAAGGTTTGGATCAATATGGTTGTATTGAATTGGTTCAAAAAATGGAGAAATGGAGTAATGAAAGTGAGAGGAACAAAAAATGCATAGTTGAGAATGGAGCAACTAGTGCATTAGCTTTAGCATTTGATGCTTTTGCTAATGATTCTATTGAGAAAAATGTTATTGTTCTTGAAGTGATTTTATCAGCACTTAATTGGATGTTTCCACTTCAATTAGAAGCTCAAAAATCTTTAGGTTCAAAAGCTTCTTTACATTGCATGATTTGGTTTTTGAAGCATCAAGATGTTAAGGGAAAAGAAAAAGCTATTATTGCATTGAAAGAGATTCTTTCTTTTGGTGATGAGAAACATGTAGAAGCACTTATGGAAATTGAAGGAGTTAATGAGCTTTTAATTGAGTTCATTAACAAGAGAATTAGTCCAATAATCACAAAATCATCATTGAGGATAATTTGGTACTTAGTTTCATCCAATTCTAATTTCAATGAAAAAATGAAATTTTCATTTGTAGAATTGGGTTTGGTTTCTTCAATTTTGCACATTCTTATTGACTCAGAAAAAAGCACTTGTGAGAAAGCTTTAACTATTTTGGATTCTTTATTAAGCTGTGATTTTGCAAGAGAAACAGCTTATGAAAATGACTTAACAATTCCTTTGTTGGTCAAAAAAATCTTGAGAGTTTCACCTTTGACCACAGAGTATTCAGTTTCTACTATATGGAAGATGTGCAAATATGGTCACAAAAATTATGAAGGAAAAGCTTTGATTGAAGCACTTCAAGTTGGTGCTTTTCAGAAGCTATTATTGGTATTGCAAGTTGGATGTAATGATGAGACCAAAGATAAAGCAACTGAACTTCTCAAATTGATGAATCCTTATAGGGCTGAATTGGAAGATTGTGTTGATTCAGATTTCAAGAATCTTAAGAGATCATATTAA

Protein sequence

>MS.gene93972.t1

MVLGWGRRKNKKNNKGGKPNMEVVIPNQFRCPITLDLMKDPVTLSTGITYDRESIERWFNEGNYTCPLTNQVVRNFDMIPNHSLRIMIQDWCVENRQNGVERIPTPRIPVSSIDVSELLFRVKESAKGLDQYGCIELVQKMEKWSNESERNKKCIVENGATSALALAFDAFANDSIEKNVIVLEVILSALNWMFPLQLEAQKSLGSKASLHCMIWFLKHQDVKGKEKAIIALKEILSFGDEKHVEALMEIEGVNELLIEFINKRISPIITKSSLRIIWYLVSSNSNFNEKMKFSFVELGLVSSILHILIDSEKSTCEKALTILDSLLSCDFARETAYENDLTIPLLVKKILRVSPLTTEYSVSTIWKMCKYGHKNYEGKALIEALQVGAFQKLLLVLQVGCNDETKDKATELLKLMNPYRAELEDCVDSDFKNLKRSY