Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027060.t1 | XP_003600111.1 | 96.9 | 225 | 7 | 0 | 1 | 225 | 1 | 225 | 4.90E-114 | 420.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027060.t1 | Q946Y7 | 67.0 | 227 | 73 | 2 | 1 | 225 | 1 | 227 | 4.5e-76 | 285.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027060.t1 | G7IY20 | 96.9 | 225 | 7 | 0 | 1 | 225 | 1 | 225 | 3.5e-114 | 420.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene81965 | MS.gene027060 | PPI |
| MS.gene027060 | MS.gene063476 | PPI |
| MS.gene40807 | MS.gene027060 | PPI |
| MS.gene056096 | MS.gene027060 | PPI |
| MS.gene65117 | MS.gene027060 | PPI |
| MS.gene013657 | MS.gene027060 | PPI |
| MS.gene02663 | MS.gene027060 | PPI |
| MS.gene66057 | MS.gene027060 | PPI |
| MS.gene033077 | MS.gene027060 | PPI |
| MS.gene005292 | MS.gene027060 | PPI |
| MS.gene052932 | MS.gene027060 | PPI |
| MS.gene44169 | MS.gene027060 | PPI |
| MS.gene044431 | MS.gene027060 | PPI |
| MS.gene78212 | MS.gene027060 | PPI |
| MS.gene77217 | MS.gene027060 | PPI |
| MS.gene69311 | MS.gene027060 | PPI |
| MS.gene44168 | MS.gene027060 | PPI |
| MS.gene056094 | MS.gene027060 | PPI |
| MS.gene072972 | MS.gene027060 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027060.t1 | MTR_3g052210 | 97.119 | 243 | 7 | 0 | 1 | 243 | 1 | 243 | 4.24e-178 | 489 |
| MS.gene027060.t1 | MTR_5g092870 | 77.966 | 236 | 48 | 2 | 1 | 232 | 1 | 236 | 3.09e-134 | 378 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027060.t1 | AT1G28490 | 67.347 | 245 | 78 | 2 | 1 | 243 | 1 | 245 | 1.22e-115 | 331 |
| MS.gene027060.t1 | AT1G28490 | 69.474 | 190 | 57 | 1 | 55 | 243 | 11 | 200 | 4.84e-89 | 262 |
| MS.gene027060.t1 | AT1G28490 | 67.662 | 201 | 59 | 2 | 44 | 243 | 11 | 206 | 1.13e-88 | 261 |
Find 49 sgRNAs with CRISPR-Local
Find 205 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTACGAAGGAGGTTCTTTC+TGG | 0.134337 | 3.2:+44767059 | MS.gene027060:CDS |
| TCTAGTACAACAAGCATTAA+TGG | 0.260115 | 3.2:+44768312 | MS.gene027060:CDS |
| ACTTACAGATTCTTGAATTT+CGG | 0.301091 | 3.2:-44766049 | None:intergenic |
| CATTATCATTGGCAGCATTC+TGG | 0.303561 | 3.2:-44768389 | None:intergenic |
| TTGCTGCCAGAGAACCTTCT+TGG | 0.313236 | 3.2:+44768044 | MS.gene027060:CDS |
| TGATAGAAAGGTGGATGAAT+TGG | 0.324293 | 3.2:+44768006 | MS.gene027060:intron |
| CATGATGATATTGGCCTTGT+TGG | 0.385210 | 3.2:+44769526 | MS.gene027060:CDS |
| GGGCCAGATCATGATGATAT+TGG | 0.392267 | 3.2:+44769517 | MS.gene027060:CDS |
| AATGAAATCATCATTATCAT+TGG | 0.404484 | 3.2:-44768400 | None:intergenic |
| AGTTTAAGCGTACAAAGAAT+TGG | 0.405972 | 3.2:+44768951 | MS.gene027060:CDS |
| CTAGTACAACAAGCATTAAT+GGG | 0.413684 | 3.2:+44768313 | MS.gene027060:CDS |
| GTTGGATGCATAAGGTTGAT+AGG | 0.437167 | 3.2:-44768367 | None:intergenic |
| GCATTCTGGTTGGATGCATA+AGG | 0.451104 | 3.2:-44768375 | None:intergenic |
| TCGGATTTGACAACGTAGAA+AGG | 0.467631 | 3.2:-44766030 | None:intergenic |
| GACAAGCAGTGCTCGTACTC+AGG | 0.468891 | 3.2:+44768108 | MS.gene027060:CDS |
| GCCAAGGAGTTCTTCATGTA+TGG | 0.471199 | 3.2:-44768988 | None:intergenic |
| CTCAAATTCAAACCTGGCCA+AGG | 0.481619 | 3.2:-44769004 | None:intergenic |
| GCCATACCAAGAAGGTTCTC+TGG | 0.485751 | 3.2:-44768050 | None:intergenic |
| TATTTGGGCTGATAGGCAAC+AGG | 0.487675 | 3.2:+44768908 | MS.gene027060:intron |
| ATGAAGAAAGCTAGTGCAAA+GGG | 0.498351 | 3.2:+44769497 | MS.gene027060:CDS |
| ACAAAACATGCCCTCAGCTC+AGG | 0.499980 | 3.2:+44766005 | None:intergenic |
| ATGAAGAAAACAGTGGATGC+TGG | 0.500370 | 3.2:+44768282 | MS.gene027060:CDS |
| GGCTGATAGGCAACAGGATG+AGG | 0.505234 | 3.2:+44768914 | MS.gene027060:intron |
| AGATTGAAAATCGGAGGAGA+TGG | 0.505923 | 3.2:+44768086 | MS.gene027060:CDS |
| ACATGAAGAACTCCTTGGCC+AGG | 0.518816 | 3.2:+44768992 | MS.gene027060:CDS |
| AGGCCAATATCATCATGATC+TGG | 0.522649 | 3.2:-44769520 | None:intergenic |
| GCCAGAGAACCTTCTTGGTA+TGG | 0.522757 | 3.2:+44768049 | MS.gene027060:CDS |
| GCATAAGGTTGATAGGAATC+CGG | 0.527293 | 3.2:-44768360 | None:intergenic |
| ATGTGAAAGCGTAGAATGGC+AGG | 0.533008 | 3.2:+44767082 | MS.gene027060:CDS |
| ACAGTAACACTGACTAGGTA+AGG | 0.536833 | 3.2:-44769580 | None:intergenic |
| ATGATGCTGAGATTGAAAAT+CGG | 0.537272 | 3.2:+44768077 | MS.gene027060:CDS |
| CTGGATGTGAAAGCGTAGAA+TGG | 0.546832 | 3.2:+44767078 | MS.gene027060:CDS |
| ATCATTGGCAGCATTCTGGT+TGG | 0.560569 | 3.2:-44768385 | None:intergenic |
| GTACAAAGAATTGGAGGCGT+TGG | 0.561989 | 3.2:+44768960 | MS.gene027060:CDS |
| GAAAAGATTATAGATGAACT+TGG | 0.564446 | 3.2:+44769196 | MS.gene027060:CDS |
| GAAAATGAACAAGGCCAACA+AGG | 0.572030 | 3.2:-44769540 | None:intergenic |
| ACCATACATGAAGAACTCCT+TGG | 0.572624 | 3.2:+44768987 | MS.gene027060:CDS |
| TTAAGCGTACAAAGAATTGG+AGG | 0.583419 | 3.2:+44768954 | MS.gene027060:CDS |
| CCGAAAACTAATGAGGCTAC+CGG | 0.584268 | 3.2:+44768341 | MS.gene027060:CDS |
| AGATGAACTTGGTAACGAGA+TGG | 0.600755 | 3.2:+44769207 | MS.gene027060:CDS |
| TCATCAATGCCATACCAAGA+AGG | 0.603070 | 3.2:-44768058 | None:intergenic |
| TAGAAAGGATCCTGAGCTGA+GGG | 0.604695 | 3.2:-44766015 | None:intergenic |
| TATGAAGAAAGCTAGTGCAA+AGG | 0.617789 | 3.2:+44769496 | MS.gene027060:CDS |
| GGATGCACCGAAAACTAATG+AGG | 0.619578 | 3.2:+44768334 | MS.gene027060:CDS |
| GAAAGTACGTGTTACGAAGG+AGG | 0.625731 | 3.2:+44767049 | MS.gene027060:CDS |
| ATGCTGAGATTGAAAATCGG+AGG | 0.637923 | 3.2:+44768080 | MS.gene027060:CDS |
| GTAGAAAGGATCCTGAGCTG+AGG | 0.654695 | 3.2:-44766016 | None:intergenic |
| TGGCACAATGAAGAAAACAG+TGG | 0.692931 | 3.2:+44768275 | MS.gene027060:CDS |
| AGAGAAAGTACGTGTTACGA+AGG | 0.698114 | 3.2:+44767046 | MS.gene027060:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAAATAACCAAAAAATT+AGG | - | chr3.2:44766542-44766561 | None:intergenic | 10.0% |
| !! | AATAAATAACCAAAAAATTA+GGG | - | chr3.2:44766541-44766560 | None:intergenic | 10.0% |
| !!! | GATTTATTTTATATCTATTT+GGG | + | chr3.2:44768893-44768912 | MS.gene027060:intron | 10.0% |
| !!! | TGATTTATTTTATATCTATT+TGG | + | chr3.2:44768892-44768911 | MS.gene027060:intron | 10.0% |
| !!! | TTTTATTCAATTTTATTTGA+TGG | + | chr3.2:44766224-44766243 | MS.gene027060:intron | 10.0% |
| !! | AAATACAATACGAAAATTTA+GGG | + | chr3.2:44766825-44766844 | MS.gene027060:intron | 15.0% |
| !! | AAATACAGTATGAAAATTTA+GGG | + | chr3.2:44766687-44766706 | MS.gene027060:intron | 15.0% |
| !! | AACTAAAATATTAACCAAAA+AGG | - | chr3.2:44768871-44768890 | None:intergenic | 15.0% |
| !! | ATAAATAACCAAAAAATTAG+GGG | - | chr3.2:44766540-44766559 | None:intergenic | 15.0% |
| !!! | AAAATGTTTCTCTTTTATTA+TGG | + | chr3.2:44769450-44769469 | MS.gene027060:intron | 15.0% |
| !!! | ATGAGTTTTAATGAATAATA+AGG | - | chr3.2:44768691-44768710 | None:intergenic | 15.0% |
| !!! | ATTTATTTGATTATGCTTTT+TGG | + | chr3.2:44766554-44766573 | MS.gene027060:intron | 15.0% |
| !!! | TTTTCATGTTTTTTACATTA+TGG | - | chr3.2:44768785-44768804 | None:intergenic | 15.0% |
| !!! | TTTTGAGTTAAAATTGATTT+GGG | + | chr3.2:44766710-44766729 | MS.gene027060:intron | 15.0% |
| !! | AAAATAAACCCTATGTAATT+TGG | - | chr3.2:44766099-44766118 | None:intergenic | 20.0% |
| !! | AAATAAACCCTATGTAATTT+GGG | - | chr3.2:44766098-44766117 | None:intergenic | 20.0% |
| !! | AAATGCAATGTGAAAATTTA+GGG | + | chr3.2:44766423-44766442 | MS.gene027060:intron | 20.0% |
| !! | AATACAATACGAAAATTTAG+GGG | + | chr3.2:44766826-44766845 | MS.gene027060:intron | 20.0% |
| !! | AATAGTTTAGAAATTTGTCT+GGG | + | chr3.2:44768815-44768834 | MS.gene027060:intron | 20.0% |
| !! | AATGAAATCATCATTATCAT+TGG | - | chr3.2:44768403-44768422 | None:intergenic | 20.0% |
| !! | AATTCATTTCCTAATTTCTT+TGG | + | chr3.2:44766264-44766283 | MS.gene027060:intron | 20.0% |
| !! | AGTTGAAATTGAATGTAAAA+TGG | + | chr3.2:44766853-44766872 | MS.gene027060:intron | 20.0% |
| !! | ATTACATATTAAGTGTTATG+AGG | - | chr3.2:44766154-44766173 | None:intergenic | 20.0% |
| !! | CAAAATCATACATCATAATT+GGG | - | chr3.2:44766770-44766789 | None:intergenic | 20.0% |
| !! | CAATGTTTAATTGATAAGAT+TGG | + | chr3.2:44766897-44766916 | MS.gene027060:intron | 20.0% |
| !! | GAAATACAATACGAAAATTT+AGG | + | chr3.2:44766824-44766843 | MS.gene027060:intron | 20.0% |
| !! | GAAATACAGTATGAAAATTT+AGG | + | chr3.2:44766686-44766705 | MS.gene027060:intron | 20.0% |
| !! | GATTAATAACCAAAGAAATT+AGG | - | chr3.2:44766276-44766295 | None:intergenic | 20.0% |
| !! | GGTATTAAGAATAATAAACT+CGG | - | chr3.2:44767358-44767377 | None:intergenic | 20.0% |
| !! | GTTGAAATTGAATGTAAAAT+GGG | + | chr3.2:44766854-44766873 | MS.gene027060:intron | 20.0% |
| !! | TAAATAACCAAAAAATTAGG+GGG | - | chr3.2:44766539-44766558 | None:intergenic | 20.0% |
| !! | TAAATGCAATGTGAAAATTT+AGG | + | chr3.2:44766422-44766441 | MS.gene027060:intron | 20.0% |
| !! | TCAAAATCATACATCATAAT+TGG | - | chr3.2:44766771-44766790 | None:intergenic | 20.0% |
| !! | TGGAATCAGAAATAAATATA+AGG | + | chr3.2:44768746-44768765 | MS.gene027060:intron | 20.0% |
| !! | TTACATATTAAGTGTTATGA+GGG | - | chr3.2:44766153-44766172 | None:intergenic | 20.0% |
| !! | TTTGGTTATTAATCTGATTA+CGG | + | chr3.2:44766282-44766301 | MS.gene027060:intron | 20.0% |
| !!! | AGTATTTTGTTTTGATAGAA+AGG | + | chr3.2:44767994-44768013 | MS.gene027060:intron | 20.0% |
| !!! | ATTTTAAAGCTTACTTTTCT+AGG | + | chr3.2:44767272-44767291 | MS.gene027060:intron | 20.0% |
| !!! | GTTTTGAGTTAAAATTGATT+TGG | + | chr3.2:44766709-44766728 | MS.gene027060:intron | 20.0% |
| !!! | TTGATGGTTTTTTTAGTATT+TGG | + | chr3.2:44766240-44766259 | MS.gene027060:intron | 20.0% |
| !!! | TTTCACATTGCATTTATTTT+CGG | - | chr3.2:44766418-44766437 | None:intergenic | 20.0% |
| ! | AAACAAAATACTTCAGCATT+TGG | - | chr3.2:44767986-44768005 | None:intergenic | 25.0% |
| ! | AATAAACCCTATGTAATTTG+GGG | - | chr3.2:44766097-44766116 | None:intergenic | 25.0% |
| ! | ACTCATATAATCTTGTAAAG+AGG | + | chr3.2:44769426-44769445 | MS.gene027060:intron | 25.0% |
| ! | ACTTACAGATTCTTGAATTT+CGG | - | chr3.2:44766052-44766071 | None:intergenic | 25.0% |
| ! | AGATTACTGTTGTGAAATAA+TGG | + | chr3.2:44769365-44769384 | MS.gene027060:intron | 25.0% |
| ! | ATTAAAACTCATAACTGAGA+TGG | + | chr3.2:44768699-44768718 | MS.gene027060:intron | 25.0% |
| ! | ATTATTCTTAATACCACTGT+TGG | + | chr3.2:44767363-44767382 | MS.gene027060:intron | 25.0% |
| ! | ATTCCATAACGAAAGAAAAA+AGG | - | chr3.2:44768732-44768751 | None:intergenic | 25.0% |
| ! | CAATAGTTTAGAAATTTGTC+TGG | + | chr3.2:44768814-44768833 | MS.gene027060:intron | 25.0% |
| ! | GAAAAATAGGAAAATGAACA+AGG | - | chr3.2:44769552-44769571 | None:intergenic | 25.0% |
| ! | GAAAAGATTATAGATGAACT+TGG | + | chr3.2:44769196-44769215 | MS.gene027060:CDS | 25.0% |
| ! | TAAGGAAGACTAAGAAAAAT+AGG | - | chr3.2:44769565-44769584 | None:intergenic | 25.0% |
| ! | TACATATTAAGTGTTATGAG+GGG | - | chr3.2:44766152-44766171 | None:intergenic | 25.0% |
| ! | TAGTTGTGTTAAATAGTCAA+GGG | - | chr3.2:44767486-44767505 | None:intergenic | 25.0% |
| ! | TCAAAGAGAAAATGAAAACT+AGG | - | chr3.2:44769278-44769297 | None:intergenic | 25.0% |
| ! | TGCTCAAAATCCAAAATTTA+TGG | - | chr3.2:44766316-44766335 | None:intergenic | 25.0% |
| ! | TGCTCAAAATCTCAAATTTA+GGG | - | chr3.2:44766744-44766763 | None:intergenic | 25.0% |
| ! | TTAGTTGTGTTAAATAGTCA+AGG | - | chr3.2:44767487-44767506 | None:intergenic | 25.0% |
| ! | TTATTCTTAATACCACTGTT+GGG | + | chr3.2:44767364-44767383 | MS.gene027060:intron | 25.0% |
| ! | TTTAAATTATATCCCAACAG+TGG | - | chr3.2:44767379-44767398 | None:intergenic | 25.0% |
| !! | AGACAAAATTACAAAAGCAT+AGG | - | chr3.2:44769129-44769148 | None:intergenic | 25.0% |
| !! | ATTAATCTGATTACGGTTTT+TGG | + | chr3.2:44766289-44766308 | MS.gene027060:intron | 25.0% |
| !! | CATCTTTCTTTTCTTTACTT+TGG | + | chr3.2:44768502-44768521 | MS.gene027060:intron | 25.0% |
| !! | GATTTTCATTCACATTTGTT+TGG | + | chr3.2:44767646-44767665 | MS.gene027060:intron | 25.0% |
| !! | GCTAATATTTAGTTCATGTT+TGG | + | chr3.2:44768659-44768678 | MS.gene027060:intron | 25.0% |
| !! | TAATTGATAAGATTGGTTCT+TGG | + | chr3.2:44766904-44766923 | MS.gene027060:intron | 25.0% |
| !! | TTTCTAGGTTCATCTAATTT+TGG | + | chr3.2:44767287-44767306 | MS.gene027060:intron | 25.0% |
| !! | TTTTACATTATGGTTACGTA+AGG | - | chr3.2:44768775-44768794 | None:intergenic | 25.0% |
| !!! | ATTTTGTTTTGATAGAAAGG+TGG | + | chr3.2:44767997-44768016 | MS.gene027060:intron | 25.0% |
| !!! | GGAAATATAATTAGCCTTTT+TGG | + | chr3.2:44768854-44768873 | MS.gene027060:intron | 25.0% |
| !!! | TTTCCTTTTTTCTTTCGTTA+TGG | + | chr3.2:44768726-44768745 | MS.gene027060:intron | 25.0% |
| !!! | TTTTTTCCCCAAATTACATA+GGG | + | chr3.2:44766088-44766107 | MS.gene027060:intron | 25.0% |
| !!! | TTTTTTTCCCCAAATTACAT+AGG | + | chr3.2:44766087-44766106 | MS.gene027060:intron | 25.0% |
| ACACAACTAAGTATAACTCA+AGG | + | chr3.2:44767497-44767516 | MS.gene027060:intron | 30.0% | |
| ACATATTAAGTGTTATGAGG+GGG | - | chr3.2:44766151-44766170 | None:intergenic | 30.0% | |
| ACTAAGTATAACTCAAGGAT+AGG | + | chr3.2:44767502-44767521 | MS.gene027060:intron | 30.0% | |
| AGTTGTGTTAAATAGTCAAG+GGG | - | chr3.2:44767485-44767504 | None:intergenic | 30.0% | |
| AGTTTAAGCGTACAAAGAAT+TGG | + | chr3.2:44768951-44768970 | MS.gene027060:CDS | 30.0% | |
| ATGATGCTGAGATTGAAAAT+CGG | + | chr3.2:44768077-44768096 | MS.gene027060:CDS | 30.0% | |
| ATTAGACAAGCTTAATGCTA+CGG | - | chr3.2:44767795-44767814 | None:intergenic | 30.0% | |
| ATTATGGTTGCAGAAAAAAG+TGG | + | chr3.2:44769466-44769485 | MS.gene027060:intron | 30.0% | |
| CAAATTCACAGATCTCAATT+GGG | - | chr3.2:44766607-44766626 | None:intergenic | 30.0% | |
| CAAATTCACAGGTTTCAATT+GGG | - | chr3.2:44766342-44766361 | None:intergenic | 30.0% | |
| CTAGTACAACAAGCATTAAT+GGG | + | chr3.2:44768313-44768332 | MS.gene027060:CDS | 30.0% | |
| CTCTCTAAATCTTATGTAAC+TGG | + | chr3.2:44768473-44768492 | MS.gene027060:intron | 30.0% | |
| CTGCTCAAAATCTCAAATTT+AGG | - | chr3.2:44766745-44766764 | None:intergenic | 30.0% | |
| CTTGAAAATGCTGTGAATTT+AGG | + | chr3.2:44766175-44766194 | MS.gene027060:intron | 30.0% | |
| TACATAAGATTTAGAGAGAG+AGG | - | chr3.2:44768471-44768490 | None:intergenic | 30.0% | |
| TATGTAGAGTCGTTGAAAAA+TGG | + | chr3.2:44767122-44767141 | MS.gene027060:intron | 30.0% | |
| TCAAATTCACAGATCTCAAT+TGG | - | chr3.2:44766608-44766627 | None:intergenic | 30.0% | |
| TCAAATTCACAGGTTTCAAT+TGG | - | chr3.2:44766343-44766362 | None:intergenic | 30.0% | |
| TCAGCATTTGGTTATAGATT+AGG | - | chr3.2:44767974-44767993 | None:intergenic | 30.0% | |
| TCTAGTACAACAAGCATTAA+TGG | + | chr3.2:44768312-44768331 | MS.gene027060:CDS | 30.0% | |
| TGATTCCTTTCTTGCTTAAT+AGG | + | chr3.2:44768251-44768270 | MS.gene027060:intron | 30.0% | |
| TGTCAAAATCTTATTGCTTC+AGG | + | chr3.2:44769174-44769193 | MS.gene027060:intron | 30.0% | |
| TTATATCTATTTGGGCTGAT+AGG | + | chr3.2:44768901-44768920 | MS.gene027060:intron | 30.0% | |
| ! | AGATTTTCCCCCTAATTTTT+TGG | + | chr3.2:44766529-44766548 | MS.gene027060:intron | 30.0% |
| ! | AGCAAAAGTCACTTTAAATG+AGG | - | chr3.2:44768537-44768556 | None:intergenic | 30.0% |
| ! | CAATGAGTTGGAAAAGAAAA+TGG | - | chr3.2:44768174-44768193 | None:intergenic | 30.0% |
| ! | TTGTAATTTTGTCTTCGTCA+GGG | + | chr3.2:44769135-44769154 | MS.gene027060:intron | 30.0% |
| ! | TTTAACCAGATTACGCTTTT+TGG | + | chr3.2:44766471-44766490 | MS.gene027060:intron | 30.0% |
| ! | TTTGTAATTTTGTCTTCGTC+AGG | + | chr3.2:44769134-44769153 | MS.gene027060:intron | 30.0% |
| !! | AATGTATGCCCAATTTTAGT+TGG | + | chr3.2:44768138-44768157 | MS.gene027060:intron | 30.0% |
| !! | GCTTTTTGGTGCATAAATTT+GGG | + | chr3.2:44766485-44766504 | MS.gene027060:intron | 30.0% |
| !!! | ATGTATGCCCAATTTTAGTT+GGG | + | chr3.2:44768139-44768158 | MS.gene027060:intron | 30.0% |
| !!! | GAGTTCATTATTGGTTTTGT+AGG | + | chr3.2:44766933-44766952 | MS.gene027060:intron | 30.0% |
| !!! | GGTTTTTGGTCCATAAATTT+TGG | + | chr3.2:44766303-44766322 | MS.gene027060:intron | 30.0% |
| AAAGAGTGAAGAGTTGAGAA+TGG | + | chr3.2:44767670-44767689 | MS.gene027060:intron | 35.0% | |
| AAAGCTCTCAAATTCAAACC+TGG | - | chr3.2:44769013-44769032 | None:intergenic | 35.0% | |
| ACAACTACTACACAATGAGT+TGG | - | chr3.2:44768186-44768205 | None:intergenic | 35.0% | |
| ATGAAGAAAGCTAGTGCAAA+GGG | + | chr3.2:44769497-44769516 | MS.gene027060:CDS | 35.0% | |
| CACAGAATTAAAGACTGAGT+AGG | - | chr3.2:44767950-44767969 | None:intergenic | 35.0% | |
| CTACTCAGTCTTTAATTCTG+TGG | + | chr3.2:44767948-44767967 | MS.gene027060:intron | 35.0% | |
| GATTTGGATAGGAAAGCAAA+GGG | - | chr3.2:44767550-44767569 | None:intergenic | 35.0% | |
| GCATCTTCCCAACTAAAATT+GGG | - | chr3.2:44768149-44768168 | None:intergenic | 35.0% | |
| TATGAAGAAAGCTAGTGCAA+AGG | + | chr3.2:44769496-44769515 | MS.gene027060:CDS | 35.0% | |
| TCCTTTCTTGCTTAATAGGT+TGG | + | chr3.2:44768255-44768274 | MS.gene027060:intron | 35.0% | |
| TGATAGAAAGGTGGATGAAT+TGG | + | chr3.2:44768006-44768025 | MS.gene027060:intron | 35.0% | |
| TGCATCTTCCCAACTAAAAT+TGG | - | chr3.2:44768150-44768169 | None:intergenic | 35.0% | |
| TGTGTAATGAATGTAGCCTA+AGG | - | chr3.2:44767888-44767907 | None:intergenic | 35.0% | |
| TGTTAAATAGTCAAGGGGAA+GGG | - | chr3.2:44767480-44767499 | None:intergenic | 35.0% | |
| TTAAGCGTACAAAGAATTGG+AGG | + | chr3.2:44768954-44768973 | MS.gene027060:CDS | 35.0% | |
| ! | ACTTTTGGATGGTTTCTGTT+GGG | + | chr3.2:44767212-44767231 | MS.gene027060:intron | 35.0% |
| ! | TACTTTTGGATGGTTTCTGT+TGG | + | chr3.2:44767211-44767230 | MS.gene027060:intron | 35.0% |
| ! | TGATAAGATTGGTTCTTGGT+GGG | + | chr3.2:44766908-44766927 | MS.gene027060:intron | 35.0% |
| ! | TTCATATTTTACAGCTTCCC+CGG | - | chr3.2:44767597-44767616 | None:intergenic | 35.0% |
| ! | TTGATAAGATTGGTTCTTGG+TGG | + | chr3.2:44766907-44766926 | MS.gene027060:intron | 35.0% |
| ! | TTTGCATGAGCACTTACTTT+TGG | + | chr3.2:44767197-44767216 | MS.gene027060:intron | 35.0% |
| !! | CGCTTTTTGGTGCATAAATT+TGG | + | chr3.2:44766484-44766503 | MS.gene027060:intron | 35.0% |
| !! | GCTTTTTGGTGCATAAAGTT+GGG | + | chr3.2:44766568-44766587 | MS.gene027060:intron | 35.0% |
| !! | TGCAATCTACTTTTGAGCAA+TGG | + | chr3.2:44767003-44767022 | MS.gene027060:CDS | 35.0% |
| !! | TGCTTTTTGGTGCATAAAGT+TGG | + | chr3.2:44766567-44766586 | MS.gene027060:intron | 35.0% |
| ACCATACATGAAGAACTCCT+TGG | + | chr3.2:44768987-44769006 | MS.gene027060:CDS | 40.0% | |
| ACTAGGTGAAGAAACTCACT+TGG | - | chr3.2:44769261-44769280 | None:intergenic | 40.0% | |
| AGATTGAAAATCGGAGGAGA+TGG | + | chr3.2:44768086-44768105 | MS.gene027060:CDS | 40.0% | |
| AGGCCAATATCATCATGATC+TGG | - | chr3.2:44769523-44769542 | None:intergenic | 40.0% | |
| ATGAAGAAAACAGTGGATGC+TGG | + | chr3.2:44768282-44768301 | MS.gene027060:CDS | 40.0% | |
| ATGCTGAGATTGAAAATCGG+AGG | + | chr3.2:44768080-44768099 | MS.gene027060:CDS | 40.0% | |
| ATTAGTCACACATGCAGACA+CGG | - | chr3.2:44768578-44768597 | None:intergenic | 40.0% | |
| CATTATCATTGGCAGCATTC+TGG | - | chr3.2:44768392-44768411 | None:intergenic | 40.0% | |
| CTACACAAGTCCCAAAAATG+CGG | + | chr3.2:44767723-44767742 | MS.gene027060:intron | 40.0% | |
| CTGGGCATACTTATGATTTC+TGG | + | chr3.2:44768833-44768852 | MS.gene027060:intron | 40.0% | |
| GAAAATGAACAAGGCCAACA+AGG | - | chr3.2:44769543-44769562 | None:intergenic | 40.0% | |
| GCCAACCTATTAAGCAAGAA+AGG | - | chr3.2:44768259-44768278 | None:intergenic | 40.0% | |
| GGATTTGGATAGGAAAGCAA+AGG | - | chr3.2:44767551-44767570 | None:intergenic | 40.0% | |
| GTAAGTGCTCATGCAAACAA+TGG | - | chr3.2:44767194-44767213 | None:intergenic | 40.0% | |
| GTAATGAATGTAGCCTAAGG+TGG | - | chr3.2:44767885-44767904 | None:intergenic | 40.0% | |
| GTGCAACACTTCAAATTCAC+AGG | - | chr3.2:44766353-44766372 | None:intergenic | 40.0% | |
| GTGTTAAATAGTCAAGGGGA+AGG | - | chr3.2:44767481-44767500 | None:intergenic | 40.0% | |
| GTTAAATAGTCAAGGGGAAG+GGG | - | chr3.2:44767479-44767498 | None:intergenic | 40.0% | |
| GTTGCAGAAAAAAGTGGCAA+TGG | + | chr3.2:44769472-44769491 | MS.gene027060:intron | 40.0% | |
| TACACAAGTCCCAAAAATGC+GGG | + | chr3.2:44767724-44767743 | MS.gene027060:intron | 40.0% | |
| TCATCAATGCCATACCAAGA+AGG | - | chr3.2:44768061-44768080 | None:intergenic | 40.0% | |
| TCGGATTTGACAACGTAGAA+AGG | - | chr3.2:44766033-44766052 | None:intergenic | 40.0% | |
| TGGCACAATGAAGAAAACAG+TGG | + | chr3.2:44768275-44768294 | MS.gene027060:CDS | 40.0% | |
| TTGCTTTCCTATCCAAATCC+TGG | + | chr3.2:44767551-44767570 | MS.gene027060:intron | 40.0% | |
| ! | AGAGAAAGTACGTGTTACGA+AGG | + | chr3.2:44767046-44767065 | MS.gene027060:CDS | 40.0% |
| ! | ATGCACCAAAAAGCGTAATC+TGG | - | chr3.2:44766479-44766498 | None:intergenic | 40.0% |
| ! | GTTGGATGCATAAGGTTGAT+AGG | - | chr3.2:44768370-44768389 | None:intergenic | 40.0% |
| !! | AGATGAACTTGGTAACGAGA+TGG | + | chr3.2:44769207-44769226 | MS.gene027060:CDS | 40.0% |
| !! | CATGAGCACTTACTTTTGGA+TGG | + | chr3.2:44767201-44767220 | MS.gene027060:intron | 40.0% |
| !! | CATGATGATATTGGCCTTGT+TGG | + | chr3.2:44769526-44769545 | MS.gene027060:CDS | 40.0% |
| !! | GCATAAGGTTGATAGGAATC+CGG | - | chr3.2:44768363-44768382 | None:intergenic | 40.0% |
| AGACTGAGTAGGACGAAGAA+TGG | - | chr3.2:44767939-44767958 | None:intergenic | 45.0% | |
| ATAGGAAAGCAAAGGGCAAG+AGG | - | chr3.2:44767543-44767562 | None:intergenic | 45.0% | |
| ATCATTGGCAGCATTCTGGT+TGG | - | chr3.2:44768388-44768407 | None:intergenic | 45.0% | |
| CCGAAAACTAATGAGGCTAC+CGG | + | chr3.2:44768341-44768360 | MS.gene027060:CDS | 45.0% | |
| CCTAAGGTGGAAAACAGAGT+AGG | - | chr3.2:44767872-44767891 | None:intergenic | 45.0% | |
| CTCAAATTCAAACCTGGCCA+AGG | - | chr3.2:44769007-44769026 | None:intergenic | 45.0% | |
| GCCAAGGAGTTCTTCATGTA+TGG | - | chr3.2:44768991-44769010 | None:intergenic | 45.0% | |
| GGAATCTCCAGGATTTGGAT+AGG | - | chr3.2:44767561-44767580 | None:intergenic | 45.0% | |
| GGATGCACCGAAAACTAATG+AGG | + | chr3.2:44768334-44768353 | MS.gene027060:CDS | 45.0% | |
| GGGCCAGATCATGATGATAT+TGG | + | chr3.2:44769517-44769536 | MS.gene027060:CDS | 45.0% | |
| GTTACGAAGGAGGTTCTTTC+TGG | + | chr3.2:44767059-44767078 | MS.gene027060:CDS | 45.0% | |
| TAGAAAGGATCCTGAGCTGA+GGG | - | chr3.2:44766018-44766037 | None:intergenic | 45.0% | |
| TATTTGGGCTGATAGGCAAC+AGG | + | chr3.2:44768908-44768927 | MS.gene027060:intron | 45.0% | |
| TGGTGGGACGAGTTCATTAT+TGG | + | chr3.2:44766924-44766943 | MS.gene027060:intron | 45.0% | |
| ! | ATGTGAAAGCGTAGAATGGC+AGG | + | chr3.2:44767082-44767101 | MS.gene027060:CDS | 45.0% |
| ! | CCTACTCTGTTTTCCACCTT+AGG | + | chr3.2:44767869-44767888 | MS.gene027060:intron | 45.0% |
| ! | CTGGATGTGAAAGCGTAGAA+TGG | + | chr3.2:44767078-44767097 | MS.gene027060:CDS | 45.0% |
| ! | GAAAGTACGTGTTACGAAGG+AGG | + | chr3.2:44767049-44767068 | MS.gene027060:CDS | 45.0% |
| ! | GCATTCTGGTTGGATGCATA+AGG | - | chr3.2:44768378-44768397 | None:intergenic | 45.0% |
| ! | GTACAAAGAATTGGAGGCGT+TGG | + | chr3.2:44768960-44768979 | MS.gene027060:CDS | 45.0% |
| ! | TTCACTCCACCCGCATTTTT+GGG | - | chr3.2:44767736-44767755 | None:intergenic | 45.0% |
| ! | TTTCACTCCACCCGCATTTT+TGG | - | chr3.2:44767737-44767756 | None:intergenic | 45.0% |
| !!! | CCGGTAGCCTCATTAGTTTT+CGG | - | chr3.2:44768344-44768363 | None:intergenic | 45.0% |
| ACAAGTCCCAAAAATGCGGG+TGG | + | chr3.2:44767727-44767746 | MS.gene027060:intron | 50.0% | |
| ACATGAAGAACTCCTTGGCC+AGG | + | chr3.2:44768992-44769011 | MS.gene027060:CDS | 50.0% | |
| CCAAATCCTGGAGATTCCCT+GGG | + | chr3.2:44767563-44767582 | MS.gene027060:intron | 50.0% | |
| GCCAGAGAACCTTCTTGGTA+TGG | + | chr3.2:44768049-44768068 | MS.gene027060:CDS | 50.0% | |
| GCCATACCAAGAAGGTTCTC+TGG | - | chr3.2:44768053-44768072 | None:intergenic | 50.0% | |
| GTAGAAAGGATCCTGAGCTG+AGG | - | chr3.2:44766019-44766038 | None:intergenic | 50.0% | |
| TCCAAATCCTGGAGATTCCC+TGG | + | chr3.2:44767562-44767581 | MS.gene027060:intron | 50.0% | |
| TTGCTGCCAGAGAACCTTCT+TGG | + | chr3.2:44768044-44768063 | MS.gene027060:CDS | 50.0% | |
| ! | GAAAGCGTAGAATGGCAGGT+AGG | + | chr3.2:44767086-44767105 | MS.gene027060:intron | 50.0% |
| AGCATACCCAGGGAATCTCC+AGG | - | chr3.2:44767572-44767591 | None:intergenic | 55.0% | |
| ATTCCCTGGGTATGCTTGCC+GGG | + | chr3.2:44767576-44767595 | MS.gene027060:intron | 55.0% | |
| CCCAGGGAATCTCCAGGATT+TGG | - | chr3.2:44767566-44767585 | None:intergenic | 55.0% | |
| GACAAGCAGTGCTCGTACTC+AGG | + | chr3.2:44768108-44768127 | MS.gene027060:CDS | 55.0% | |
| GATTCCCTGGGTATGCTTGC+CGG | + | chr3.2:44767575-44767594 | MS.gene027060:intron | 55.0% | |
| GGCTGATAGGCAACAGGATG+AGG | + | chr3.2:44768914-44768933 | MS.gene027060:intron | 55.0% | |
| TTCCCCGGCAAGCATACCCA+GGG | - | chr3.2:44767582-44767601 | None:intergenic | 60.0% | |
| TTCCCTGGGTATGCTTGCCG+GGG | + | chr3.2:44767577-44767596 | MS.gene027060:intron | 60.0% | |
| CTTCCCCGGCAAGCATACCC+AGG | - | chr3.2:44767583-44767602 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 44766012 | 44769589 | 44766012 | ID=MS.gene027060 |
| chr3.2 | mRNA | 44766012 | 44769589 | 44766012 | ID=MS.gene027060.t1;Parent=MS.gene027060 |
| chr3.2 | exon | 44766012 | 44766065 | 44766012 | ID=MS.gene027060.t1.exon1;Parent=MS.gene027060.t1 |
| chr3.2 | CDS | 44766012 | 44766065 | 44766012 | ID=cds.MS.gene027060.t1;Parent=MS.gene027060.t1 |
| chr3.2 | exon | 44766993 | 44767103 | 44766993 | ID=MS.gene027060.t1.exon2;Parent=MS.gene027060.t1 |
| chr3.2 | CDS | 44766993 | 44767103 | 44766993 | ID=cds.MS.gene027060.t1;Parent=MS.gene027060.t1 |
| chr3.2 | exon | 44768016 | 44768129 | 44768016 | ID=MS.gene027060.t1.exon3;Parent=MS.gene027060.t1 |
| chr3.2 | CDS | 44768016 | 44768129 | 44768016 | ID=cds.MS.gene027060.t1;Parent=MS.gene027060.t1 |
| chr3.2 | exon | 44768273 | 44768457 | 44768273 | ID=MS.gene027060.t1.exon4;Parent=MS.gene027060.t1 |
| chr3.2 | CDS | 44768273 | 44768457 | 44768273 | ID=cds.MS.gene027060.t1;Parent=MS.gene027060.t1 |
| chr3.2 | exon | 44768923 | 44769013 | 44768923 | ID=MS.gene027060.t1.exon5;Parent=MS.gene027060.t1 |
| chr3.2 | CDS | 44768923 | 44769013 | 44768923 | ID=cds.MS.gene027060.t1;Parent=MS.gene027060.t1 |
| chr3.2 | exon | 44769196 | 44769261 | 44769196 | ID=MS.gene027060.t1.exon6;Parent=MS.gene027060.t1 |
| chr3.2 | CDS | 44769196 | 44769261 | 44769196 | ID=cds.MS.gene027060.t1;Parent=MS.gene027060.t1 |
| chr3.2 | exon | 44769479 | 44769589 | 44769479 | ID=MS.gene027060.t1.exon7;Parent=MS.gene027060.t1 |
| chr3.2 | CDS | 44769479 | 44769589 | 44769479 | ID=cds.MS.gene027060.t1;Parent=MS.gene027060.t1 |
| Gene Sequence |
| Protein sequence |
