Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063476.t1 | XP_013457961.1 | 92.4 | 301 | 16 | 3 | 1 | 295 | 1 | 300 | 1.10E-139 | 506.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063476.t1 | Q9S7P9 | 62.4 | 303 | 103 | 3 | 1 | 295 | 1 | 300 | 5.5e-92 | 339.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063476.t1 | A0A072UQP3 | 92.4 | 301 | 16 | 3 | 1 | 295 | 1 | 300 | 7.7e-140 | 506.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene027060 | MS.gene063476 | PPI |
| MS.gene01343 | MS.gene063476 | PPI |
| MS.gene062285 | MS.gene063476 | PPI |
| MS.gene063476 | MS.gene017190 | PPI |
| MS.gene32192 | MS.gene063476 | PPI |
| MS.gene047508 | MS.gene063476 | PPI |
| MS.gene038424 | MS.gene063476 | PPI |
| MS.gene002374 | MS.gene063476 | PPI |
| MS.gene82750 | MS.gene063476 | PPI |
| MS.gene50365 | MS.gene063476 | PPI |
| MS.gene22643 | MS.gene063476 | PPI |
| MS.gene53170 | MS.gene063476 | PPI |
| MS.gene063476 | MS.gene55383 | PPI |
| MS.gene063476 | MS.gene99692 | PPI |
| MS.gene01756 | MS.gene063476 | PPI |
| MS.gene063476 | MS.gene065513 | PPI |
| MS.gene052542 | MS.gene063476 | PPI |
| MS.gene90588 | MS.gene063476 | PPI |
| MS.gene035217 | MS.gene063476 | PPI |
| MS.gene063476 | MS.gene01347 | PPI |
| MS.gene063476 | MS.gene22645 | PPI |
| MS.gene33736 | MS.gene063476 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063476.t1 | MTR_4g109310 | 94.352 | 301 | 10 | 3 | 1 | 295 | 1 | 300 | 0.0 | 570 |
| MS.gene063476.t1 | MTR_3g023720 | 65.320 | 297 | 100 | 2 | 1 | 295 | 1 | 296 | 8.28e-132 | 376 |
| MS.gene063476.t1 | MTR_8g021950 | 83.645 | 214 | 35 | 0 | 81 | 294 | 13 | 226 | 9.38e-130 | 368 |
| MS.gene063476.t1 | MTR_3g023720 | 66.810 | 232 | 74 | 2 | 1 | 230 | 1 | 231 | 5.35e-102 | 299 |
| MS.gene063476.t1 | MTR_5g043850 | 61.429 | 210 | 81 | 0 | 86 | 295 | 62 | 271 | 2.54e-89 | 267 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063476.t1 | AT5G61210 | 63.366 | 303 | 100 | 3 | 1 | 295 | 1 | 300 | 1.22e-125 | 360 |
| MS.gene063476.t1 | AT5G61210 | 63.366 | 303 | 100 | 3 | 1 | 295 | 1 | 300 | 1.22e-125 | 360 |
| MS.gene063476.t1 | AT1G13890 | 56.981 | 265 | 88 | 3 | 31 | 295 | 25 | 263 | 2.86e-99 | 292 |
| MS.gene063476.t1 | AT1G13890 | 56.981 | 265 | 88 | 3 | 31 | 295 | 25 | 263 | 2.86e-99 | 292 |
| MS.gene063476.t1 | AT5G07880 | 54.435 | 248 | 105 | 4 | 51 | 295 | 9 | 251 | 4.25e-84 | 253 |
| MS.gene063476.t1 | AT5G07880 | 54.435 | 248 | 105 | 4 | 51 | 295 | 9 | 251 | 4.25e-84 | 253 |
Find 69 sgRNAs with CRISPR-Local
Find 112 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTTTGGTTTCCATGTTT+TGG | 0.161514 | 8.4:-18237714 | None:intergenic |
| AAGAATAATTTCCGTGATTC+TGG | 0.208002 | 8.4:+18237080 | MS.gene063476:CDS |
| GTCAAATTTAAGTGATCTAT+TGG | 0.241177 | 8.4:+18238282 | MS.gene063476:CDS |
| GTTATTGTTCGTGTCTTCTT+TGG | 0.273083 | 8.4:-18237728 | None:intergenic |
| TCAGCGTGCTCGTCGTCTAA+TGG | 0.284873 | 8.4:+18238558 | MS.gene063476:CDS |
| CTTCCAGGGAGAAAAGCTTT+TGG | 0.287660 | 8.4:+18237670 | MS.gene063476:intron |
| CAGCGTGCTCGTCGTCTAAT+GGG | 0.360616 | 8.4:+18238559 | MS.gene063476:CDS |
| CGGGTTGGTGTTCACTTCTA+AGG | 0.370097 | 8.4:-18236979 | None:intergenic |
| AAGAAGACACGAACAATAAC+AGG | 0.376000 | 8.4:+18237731 | MS.gene063476:CDS |
| TCAAATTTAAGTGATCTATT+GGG | 0.415335 | 8.4:+18238283 | MS.gene063476:CDS |
| CTGAGGTGGAGTTCGCAGCC+TGG | 0.418844 | 8.4:-18237936 | None:intergenic |
| ATCGATCAGCAGATCGGAAC+AGG | 0.432890 | 8.4:+18237054 | MS.gene063476:CDS |
| CTTGGAACAGAGAGAGAAGT+TGG | 0.449507 | 8.4:+18237886 | MS.gene063476:CDS |
| GTCCTGAAACAGTTTGAAAA+GGG | 0.453070 | 8.4:+18238241 | MS.gene063476:intron |
| GGCTCAGGAGACTACGAAAT+CGG | 0.458848 | 8.4:+18237154 | MS.gene063476:CDS |
| TGTCCTGAAACAGTTTGAAA+AGG | 0.464558 | 8.4:+18238240 | MS.gene063476:intron |
| CTGCATCCGAAGGGCAGTCC+AGG | 0.468430 | 8.4:+18237918 | MS.gene063476:CDS |
| TCGCAGCCTGGACTGCCCTT+CGG | 0.470997 | 8.4:-18237924 | None:intergenic |
| AGATGATGTGGTCAGAAGAA+AGG | 0.476325 | 8.4:+18237856 | MS.gene063476:intron |
| GAATCAATCCGTGCAGGAGT+TGG | 0.484109 | 8.4:+18237112 | MS.gene063476:CDS |
| TTATGCTGTTTACAAGGCTC+AGG | 0.485262 | 8.4:+18237139 | MS.gene063476:CDS |
| AAAAGACATGGCTGTTGACA+TGG | 0.488301 | 8.4:+18238312 | MS.gene063476:CDS |
| TGATTCTGATGATGAAGAAA+AGG | 0.490267 | 8.4:+18236902 | MS.gene063476:CDS |
| TTTGCTCACCCTGGTGATGA+AGG | 0.490885 | 8.4:-18237238 | None:intergenic |
| TCTTCATCATCAGAATCAAA+CGG | 0.492502 | 8.4:-18236897 | None:intergenic |
| GTGTCATCAACATCATCAAA+CGG | 0.494369 | 8.4:-18236999 | None:intergenic |
| GATGATGTGGTCAGAAGAAA+GGG | 0.499310 | 8.4:+18237857 | MS.gene063476:intron |
| CAGGATTTAACATCATTGAC+AGG | 0.519852 | 8.4:-18236867 | None:intergenic |
| TGTCATCAACATCATCAAAC+GGG | 0.522938 | 8.4:-18236998 | None:intergenic |
| CTGTCAATGATGTTAAATCC+TGG | 0.525081 | 8.4:+18236868 | MS.gene063476:CDS |
| GGAGAATTATGCTGTTTACA+AGG | 0.528960 | 8.4:+18237133 | MS.gene063476:CDS |
| TGAACATACGTTGATGATGA+TGG | 0.536679 | 8.4:-18237032 | None:intergenic |
| GAGTTGAATTTCCGAGTGAA+AGG | 0.537349 | 8.4:+18238529 | MS.gene063476:CDS |
| CAGAAGAAAGGGAAACCACT+TGG | 0.541759 | 8.4:+18237868 | MS.gene063476:CDS |
| GCATCTGTTGGTTCCTGAGG+TGG | 0.541871 | 8.4:-18237950 | None:intergenic |
| CAGGCTGCGAACTCCACCTC+AGG | 0.542135 | 8.4:+18237937 | MS.gene063476:CDS |
| TTGGAACAGAGAGAGAAGTT+GGG | 0.548541 | 8.4:+18237887 | MS.gene063476:CDS |
| ACATTGATCGAGATTTAAGT+CGG | 0.558173 | 8.4:+18237288 | MS.gene063476:CDS |
| ATTGGTCACCCTTCATCACC+AGG | 0.565796 | 8.4:+18237229 | MS.gene063476:CDS |
| GGATTGACTTCTGCATCCGA+AGG | 0.568407 | 8.4:+18237908 | MS.gene063476:CDS |
| TCTCTACTCCGCCAGAATCA+CGG | 0.572418 | 8.4:-18237091 | None:intergenic |
| CATTGATCGAGATTTAAGTC+GGG | 0.574898 | 8.4:+18237289 | MS.gene063476:CDS |
| ACTTCTCTCTCTGTTCCAAG+TGG | 0.575202 | 8.4:-18237883 | None:intergenic |
| ACCAGGGTGAGCAAATTACT+AGG | 0.577859 | 8.4:+18237246 | MS.gene063476:CDS |
| AGAATCAAACGGATTCGACC+AGG | 0.580437 | 8.4:-18236886 | None:intergenic |
| AGTAGAGAATCAATCCGTGC+AGG | 0.582352 | 8.4:+18237106 | MS.gene063476:CDS |
| GCTGATTAGCACCTTTCACT+CGG | 0.583306 | 8.4:-18238540 | None:intergenic |
| ATGTTCATCGATCAGCAGAT+CGG | 0.583816 | 8.4:+18237048 | MS.gene063476:CDS |
| AGAGGATGCTGCCAAGACAT+TGG | 0.589813 | 8.4:+18237211 | MS.gene063476:CDS |
| TCCTAGTAATTTGCTCACCC+TGG | 0.593660 | 8.4:-18237247 | None:intergenic |
| ATGAAGGGTGACCAATGTCT+TGG | 0.599124 | 8.4:-18237222 | None:intergenic |
| ATCAACATCATCAAACGGGT+TGG | 0.602656 | 8.4:-18236994 | None:intergenic |
| AATAATTTCCGTGATTCTGG+CGG | 0.606685 | 8.4:+18237083 | MS.gene063476:CDS |
| ACATGGGATCAGAAATTGAG+AGG | 0.608886 | 8.4:+18238329 | MS.gene063476:CDS |
| GATCAATGTCAGTGGCGACA+TGG | 0.609207 | 8.4:-18237274 | None:intergenic |
| AGTGCATCTGTTGGTTCCTG+AGG | 0.613449 | 8.4:-18237953 | None:intergenic |
| ATAATTCTCCAACTCCTGCA+CGG | 0.621109 | 8.4:-18237120 | None:intergenic |
| GATAGCAGAGAACATAAGAG+AGG | 0.628193 | 8.4:+18237193 | MS.gene063476:CDS |
| AAAGACATGGCTGTTGACAT+GGG | 0.628546 | 8.4:+18238313 | MS.gene063476:CDS |
| GATTGACTTCTGCATCCGAA+GGG | 0.630700 | 8.4:+18237909 | MS.gene063476:CDS |
| TCCTGAAACAGTTTGAAAAG+GGG | 0.633495 | 8.4:+18238242 | MS.gene063476:intron |
| TTGCTCACCCTGGTGATGAA+GGG | 0.636196 | 8.4:-18237237 | None:intergenic |
| ATCATCGTCTAAATGACTCA+AGG | 0.636326 | 8.4:-18238500 | None:intergenic |
| TTCATGTTATGTAGATGATG+TGG | 0.649887 | 8.4:+18237844 | MS.gene063476:intron |
| GAGTCATTTAGACGATGATG+TGG | 0.659325 | 8.4:+18238504 | MS.gene063476:CDS |
| ATTGGGAGAGCTAAAAGACA+TGG | 0.663652 | 8.4:+18238300 | MS.gene063476:CDS |
| AGATGCACTTGCAAAAGTCG+AGG | 0.670404 | 8.4:+18237967 | MS.gene063476:CDS |
| TAAATCTCGATCAATGTCAG+TGG | 0.678850 | 8.4:-18237282 | None:intergenic |
| TTGGTCACCCTTCATCACCA+GGG | 0.732586 | 8.4:+18237230 | MS.gene063476:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATTAGAAAAGAAAACATA+TGG | - | chr8.4:18237789-18237808 | None:intergenic | 15.0% |
| !!! | CTATTTTTTAAAATACTCAT+AGG | - | chr8.4:18237522-18237541 | None:intergenic | 15.0% |
| !!! | GTCAAAATTTAGTAAATTTT+CGG | - | chr8.4:18237636-18237655 | None:intergenic | 15.0% |
| !! | AGAGTTTGCAATATTATTAA+TGG | - | chr8.4:18238145-18238164 | None:intergenic | 20.0% |
| !! | TAAATCCATTTAATCTTTGT+TGG | + | chr8.4:18238072-18238091 | MS.gene063476:intron | 20.0% |
| !! | TCAAATTTAAGTGATCTATT+GGG | + | chr8.4:18238283-18238302 | MS.gene063476:CDS | 20.0% |
| !! | TTAAACAAATAACAAAGTGA+TGG | + | chr8.4:18238384-18238403 | MS.gene063476:intron | 20.0% |
| !!! | ATGGTTCTCATAATTTATTT+TGG | + | chr8.4:18238454-18238473 | MS.gene063476:intron | 20.0% |
| ! | AGTAACCAACAAAGATTAAA+TGG | - | chr8.4:18238080-18238099 | None:intergenic | 25.0% |
| ! | ATTAACACTAATATTGTGCA+AGG | - | chr8.4:18238196-18238215 | None:intergenic | 25.0% |
| ! | ATTAACCTCCAAAAATAACA+GGG | - | chr8.4:18237757-18237776 | None:intergenic | 25.0% |
| ! | GTCAAATTTAAGTGATCTAT+TGG | + | chr8.4:18238282-18238301 | MS.gene063476:CDS | 25.0% |
| ! | TATTAACCTCCAAAAATAAC+AGG | - | chr8.4:18237758-18237777 | None:intergenic | 25.0% |
| ! | TTGTGTTGTATCATTATCAT+AGG | + | chr8.4:18237811-18237830 | MS.gene063476:intron | 25.0% |
| !! | CAACATAAATTTGTTCACAA+AGG | - | chr8.4:18237379-18237398 | None:intergenic | 25.0% |
| !!! | TTTATTTTGGTAAATGTTGC+AGG | + | chr8.4:18238467-18238486 | MS.gene063476:intron | 25.0% |
| AAGAATAATTTCCGTGATTC+TGG | + | chr8.4:18237080-18237099 | MS.gene063476:CDS | 30.0% | |
| ACAAGTAAAGTCTTTCTCAA+AGG | - | chr8.4:18238431-18238450 | None:intergenic | 30.0% | |
| ACATTGATCGAGATTTAAGT+CGG | + | chr8.4:18237288-18237307 | MS.gene063476:CDS | 30.0% | |
| GAAAGACTTTACTTGTTCTA+TGG | + | chr8.4:18238435-18238454 | MS.gene063476:intron | 30.0% | |
| TCTTCATCATCAGAATCAAA+CGG | - | chr8.4:18236900-18236919 | None:intergenic | 30.0% | |
| TTCATGTTATGTAGATGATG+TGG | + | chr8.4:18237844-18237863 | MS.gene063476:intron | 30.0% | |
| ! | TGATTCTGATGATGAAGAAA+AGG | + | chr8.4:18236902-18236921 | MS.gene063476:CDS | 30.0% |
| !! | ACATGAAGAAAGCACTATAT+AGG | - | chr8.4:18237349-18237368 | None:intergenic | 30.0% |
| AAGAAGACACGAACAATAAC+AGG | + | chr8.4:18237731-18237750 | MS.gene063476:CDS | 35.0% | |
| AATAATTTCCGTGATTCTGG+CGG | + | chr8.4:18237083-18237102 | MS.gene063476:CDS | 35.0% | |
| ATCATCGTCTAAATGACTCA+AGG | - | chr8.4:18238503-18238522 | None:intergenic | 35.0% | |
| CAGGATTTAACATCATTGAC+AGG | - | chr8.4:18236870-18236889 | None:intergenic | 35.0% | |
| CATTGATCGAGATTTAAGTC+GGG | + | chr8.4:18237289-18237308 | MS.gene063476:CDS | 35.0% | |
| CTGTCAATGATGTTAAATCC+TGG | + | chr8.4:18236868-18236887 | MS.gene063476:CDS | 35.0% | |
| GTAATGAAACCCGTTCAAAT+TGG | + | chr8.4:18237416-18237435 | MS.gene063476:intron | 35.0% | |
| GTCCACAATACCAATTTGAA+CGG | - | chr8.4:18237429-18237448 | None:intergenic | 35.0% | |
| GTCCTGAAACAGTTTGAAAA+GGG | + | chr8.4:18238241-18238260 | MS.gene063476:intron | 35.0% | |
| GTGTCATCAACATCATCAAA+CGG | - | chr8.4:18237002-18237021 | None:intergenic | 35.0% | |
| GTTATTGTTCGTGTCTTCTT+TGG | - | chr8.4:18237731-18237750 | None:intergenic | 35.0% | |
| TAAATCTCGATCAATGTCAG+TGG | - | chr8.4:18237285-18237304 | None:intergenic | 35.0% | |
| TAACAAAGTGATGGTCGATT+TGG | + | chr8.4:18238393-18238412 | MS.gene063476:intron | 35.0% | |
| TCCACAATACCAATTTGAAC+GGG | - | chr8.4:18237428-18237447 | None:intergenic | 35.0% | |
| TCCTGAAACAGTTTGAAAAG+GGG | + | chr8.4:18238242-18238261 | MS.gene063476:intron | 35.0% | |
| TGTCATCAACATCATCAAAC+GGG | - | chr8.4:18237001-18237020 | None:intergenic | 35.0% | |
| TGTCCTGAAACAGTTTGAAA+AGG | + | chr8.4:18238240-18238259 | MS.gene063476:intron | 35.0% | |
| ! | GGAGAATTATGCTGTTTACA+AGG | + | chr8.4:18237133-18237152 | MS.gene063476:CDS | 35.0% |
| ! | TCTTTTCCCATAAGTGCTTT+GGG | - | chr8.4:18237477-18237496 | None:intergenic | 35.0% |
| ! | TTCTTTTCCCATAAGTGCTT+TGG | - | chr8.4:18237478-18237497 | None:intergenic | 35.0% |
| !! | CTTCTTTGGTTTCCATGTTT+TGG | - | chr8.4:18237717-18237736 | None:intergenic | 35.0% |
| !! | TGAACATACGTTGATGATGA+TGG | - | chr8.4:18237035-18237054 | None:intergenic | 35.0% |
| !!! | ATAACAGGCCCTGTTATTTT+TGG | + | chr8.4:18237746-18237765 | MS.gene063476:CDS | 35.0% |
| !!! | GTTTCCATGTTTTGGAAAAG+AGG | - | chr8.4:18237709-18237728 | None:intergenic | 35.0% |
| AAAAGACATGGCTGTTGACA+TGG | + | chr8.4:18238312-18238331 | MS.gene063476:CDS | 40.0% | |
| AAAGACATGGCTGTTGACAT+GGG | + | chr8.4:18238313-18238332 | MS.gene063476:CDS | 40.0% | |
| ACATGGGATCAGAAATTGAG+AGG | + | chr8.4:18238329-18238348 | MS.gene063476:CDS | 40.0% | |
| ACCCGTTCAAATTGGTATTG+TGG | + | chr8.4:18237424-18237443 | MS.gene063476:intron | 40.0% | |
| AGATGATGTGGTCAGAAGAA+AGG | + | chr8.4:18237856-18237875 | MS.gene063476:intron | 40.0% | |
| ATAATTCTCCAACTCCTGCA+CGG | - | chr8.4:18237123-18237142 | None:intergenic | 40.0% | |
| ATCAACATCATCAAACGGGT+TGG | - | chr8.4:18236997-18237016 | None:intergenic | 40.0% | |
| ATGTTCATCGATCAGCAGAT+CGG | + | chr8.4:18237048-18237067 | MS.gene063476:CDS | 40.0% | |
| ATTGGGAGAGCTAAAAGACA+TGG | + | chr8.4:18238300-18238319 | MS.gene063476:CDS | 40.0% | |
| GAGTCATTTAGACGATGATG+TGG | + | chr8.4:18238504-18238523 | MS.gene063476:CDS | 40.0% | |
| GAGTTGAATTTCCGAGTGAA+AGG | + | chr8.4:18238529-18238548 | MS.gene063476:CDS | 40.0% | |
| GATAGCAGAGAACATAAGAG+AGG | + | chr8.4:18237193-18237212 | MS.gene063476:CDS | 40.0% | |
| GATGATGTGGTCAGAAGAAA+GGG | + | chr8.4:18237857-18237876 | MS.gene063476:intron | 40.0% | |
| TTGGAACAGAGAGAGAAGTT+GGG | + | chr8.4:18237887-18237906 | MS.gene063476:CDS | 40.0% | |
| ! | AAAGCTTTGTCAAGTTCAGC+AGG | - | chr8.4:18238037-18238056 | None:intergenic | 40.0% |
| ! | AACTTCTCCCAAAGCACTTA+TGG | + | chr8.4:18237467-18237486 | MS.gene063476:intron | 40.0% |
| ! | ACTTCTCCCAAAGCACTTAT+GGG | + | chr8.4:18237468-18237487 | MS.gene063476:intron | 40.0% |
| ! | ACTTTTGCAAGTGCATCTGT+TGG | - | chr8.4:18237965-18237984 | None:intergenic | 40.0% |
| ! | AGTAAATTTTCGGCACAGCT+TGG | - | chr8.4:18237626-18237645 | None:intergenic | 40.0% |
| ! | GTAAATTTTCGGCACAGCTT+GGG | - | chr8.4:18237625-18237644 | None:intergenic | 40.0% |
| ! | TCCCCTTTTCAAACTGTTTC+AGG | - | chr8.4:18238246-18238265 | None:intergenic | 40.0% |
| ! | TGTCTTATTACCTGCTTCCA+GGG | + | chr8.4:18237656-18237675 | MS.gene063476:intron | 40.0% |
| ! | TTATGCTGTTTACAAGGCTC+AGG | + | chr8.4:18237139-18237158 | MS.gene063476:CDS | 40.0% |
| ! | TTCCAGGGAGAAAAGCTTTT+GGG | + | chr8.4:18237671-18237690 | MS.gene063476:intron | 40.0% |
| ACCAGGGTGAGCAAATTACT+AGG | + | chr8.4:18237246-18237265 | MS.gene063476:CDS | 45.0% | |
| ACTTCTCTCTCTGTTCCAAG+TGG | - | chr8.4:18237886-18237905 | None:intergenic | 45.0% | |
| AGATGCACTTGCAAAAGTCG+AGG | + | chr8.4:18237967-18237986 | MS.gene063476:CDS | 45.0% | |
| AGTAGAGAATCAATCCGTGC+AGG | + | chr8.4:18237106-18237125 | MS.gene063476:CDS | 45.0% | |
| ATGAAGGGTGACCAATGTCT+TGG | - | chr8.4:18237225-18237244 | None:intergenic | 45.0% | |
| CAGAAGAAAGGGAAACCACT+TGG | + | chr8.4:18237868-18237887 | MS.gene063476:CDS | 45.0% | |
| CTTGGAACAGAGAGAGAAGT+TGG | + | chr8.4:18237886-18237905 | MS.gene063476:CDS | 45.0% | |
| GCTGATTAGCACCTTTCACT+CGG | - | chr8.4:18238543-18238562 | None:intergenic | 45.0% | |
| ! | AGAATCAAACGGATTCGACC+AGG | - | chr8.4:18236889-18236908 | None:intergenic | 45.0% |
| ! | CTGTCTTATTACCTGCTTCC+AGG | + | chr8.4:18237655-18237674 | MS.gene063476:intron | 45.0% |
| ! | CTTCCAGGGAGAAAAGCTTT+TGG | + | chr8.4:18237670-18237689 | MS.gene063476:intron | 45.0% |
| ! | GATTGACTTCTGCATCCGAA+GGG | + | chr8.4:18237909-18237928 | MS.gene063476:CDS | 45.0% |
| ! | GTGGCCTCTTTTCCAAAACA+TGG | + | chr8.4:18237702-18237721 | MS.gene063476:CDS | 45.0% |
| ! | TTCCCAAAAGCTTTTCTCCC+TGG | - | chr8.4:18237676-18237695 | None:intergenic | 45.0% |
| !! | GAAAAGCTTTTGGGAAGCCT+TGG | + | chr8.4:18237680-18237699 | MS.gene063476:CDS | 45.0% |
| !! | TCCTAGTAATTTGCTCACCC+TGG | - | chr8.4:18237250-18237269 | None:intergenic | 45.0% |
| !! | TTTTGGAAAAGAGGCCACCA+AGG | - | chr8.4:18237700-18237719 | None:intergenic | 45.0% |
| !!! | ACAGGCCCTGTTATTTTTGG+AGG | + | chr8.4:18237749-18237768 | MS.gene063476:CDS | 45.0% |
| AGAGGATGCTGCCAAGACAT+TGG | + | chr8.4:18237211-18237230 | MS.gene063476:CDS | 50.0% | |
| ATCGATCAGCAGATCGGAAC+AGG | + | chr8.4:18237054-18237073 | MS.gene063476:CDS | 50.0% | |
| ATTGGTCACCCTTCATCACC+AGG | + | chr8.4:18237229-18237248 | MS.gene063476:CDS | 50.0% | |
| GAATCAATCCGTGCAGGAGT+TGG | + | chr8.4:18237112-18237131 | MS.gene063476:CDS | 50.0% | |
| GATCAATGTCAGTGGCGACA+TGG | - | chr8.4:18237277-18237296 | None:intergenic | 50.0% | |
| GGCTCAGGAGACTACGAAAT+CGG | + | chr8.4:18237154-18237173 | MS.gene063476:CDS | 50.0% | |
| TCTCTACTCCGCCAGAATCA+CGG | - | chr8.4:18237094-18237113 | None:intergenic | 50.0% | |
| TTGGTCACCCTTCATCACCA+GGG | + | chr8.4:18237230-18237249 | MS.gene063476:CDS | 50.0% | |
| ! | AAGCTTTTCTCCCTGGAAGC+AGG | - | chr8.4:18237669-18237688 | None:intergenic | 50.0% |
| ! | GGATTGACTTCTGCATCCGA+AGG | + | chr8.4:18237908-18237927 | MS.gene063476:CDS | 50.0% |
| ! | TTGCTCACCCTGGTGATGAA+GGG | - | chr8.4:18237240-18237259 | None:intergenic | 50.0% |
| ! | TTTGCTCACCCTGGTGATGA+AGG | - | chr8.4:18237241-18237260 | None:intergenic | 50.0% |
| !! | AAGCTTTTGGGAAGCCTTGG+TGG | + | chr8.4:18237683-18237702 | MS.gene063476:CDS | 50.0% |
| !! | AGTGCATCTGTTGGTTCCTG+AGG | - | chr8.4:18237956-18237975 | None:intergenic | 50.0% |
| !! | CGGGTTGGTGTTCACTTCTA+AGG | - | chr8.4:18236982-18237001 | None:intergenic | 50.0% |
| CAGCGTGCTCGTCGTCTAAT+GGG | + | chr8.4:18238559-18238578 | MS.gene063476:CDS | 55.0% | |
| TCAGCGTGCTCGTCGTCTAA+TGG | + | chr8.4:18238558-18238577 | MS.gene063476:CDS | 55.0% | |
| !! | GCATCTGTTGGTTCCTGAGG+TGG | - | chr8.4:18237953-18237972 | None:intergenic | 55.0% |
| CAGGCTGCGAACTCCACCTC+AGG | + | chr8.4:18237937-18237956 | MS.gene063476:CDS | 65.0% | |
| CTGAGGTGGAGTTCGCAGCC+TGG | - | chr8.4:18237939-18237958 | None:intergenic | 65.0% | |
| CTGCATCCGAAGGGCAGTCC+AGG | + | chr8.4:18237918-18237937 | MS.gene063476:CDS | 65.0% | |
| TCGCAGCCTGGACTGCCCTT+CGG | - | chr8.4:18237927-18237946 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 18236846 | 18238588 | 18236846 | ID=MS.gene063476 |
| chr8.4 | mRNA | 18236846 | 18238588 | 18236846 | ID=MS.gene063476.t1;Parent=MS.gene063476 |
| chr8.4 | exon | 18236846 | 18237310 | 18236846 | ID=MS.gene063476.t1.exon1;Parent=MS.gene063476.t1 |
| chr8.4 | CDS | 18236846 | 18237310 | 18236846 | ID=cds.MS.gene063476.t1;Parent=MS.gene063476.t1 |
| chr8.4 | exon | 18237677 | 18237770 | 18237677 | ID=MS.gene063476.t1.exon2;Parent=MS.gene063476.t1 |
| chr8.4 | CDS | 18237677 | 18237770 | 18237677 | ID=cds.MS.gene063476.t1;Parent=MS.gene063476.t1 |
| chr8.4 | exon | 18237858 | 18237988 | 18237858 | ID=MS.gene063476.t1.exon3;Parent=MS.gene063476.t1 |
| chr8.4 | CDS | 18237858 | 18237988 | 18237858 | ID=cds.MS.gene063476.t1;Parent=MS.gene063476.t1 |
| chr8.4 | exon | 18238253 | 18238350 | 18238253 | ID=MS.gene063476.t1.exon4;Parent=MS.gene063476.t1 |
| chr8.4 | CDS | 18238253 | 18238350 | 18238253 | ID=cds.MS.gene063476.t1;Parent=MS.gene063476.t1 |
| chr8.4 | exon | 18238489 | 18238588 | 18238489 | ID=MS.gene063476.t1.exon5;Parent=MS.gene063476.t1 |
| chr8.4 | CDS | 18238489 | 18238588 | 18238489 | ID=cds.MS.gene063476.t1;Parent=MS.gene063476.t1 |
| Gene Sequence |
| Protein sequence |
