Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44169.t1 | XP_024638596.1 | 99.7 | 325 | 1 | 0 | 1 | 325 | 1 | 325 | 2.50E-166 | 594.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44169.t1 | Q9SUJ1 | 76.4 | 335 | 65 | 3 | 1 | 325 | 1 | 331 | 9.5e-130 | 464.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44169.t1 | A0A396JXD9 | 99.7 | 325 | 1 | 0 | 1 | 325 | 1 | 325 | 1.8e-166 | 594.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056094 | MS.gene44169 | 0.961736 | 4.76E-120 | -1.69E-46 |
| MS.gene056096 | MS.gene44169 | 0.952138 | 4.62E-110 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene44169 | MS.gene02144 | PPI |
| MS.gene44169 | MS.gene062285 | PPI |
| MS.gene65117 | MS.gene44169 | PPI |
| MS.gene44169 | MS.gene02663 | PPI |
| MS.gene44169 | MS.gene78212 | PPI |
| MS.gene44169 | MS.gene77217 | PPI |
| MS.gene66057 | MS.gene44169 | PPI |
| MS.gene44169 | MS.gene017190 | PPI |
| MS.gene44169 | MS.gene059227 | PPI |
| MS.gene013657 | MS.gene44169 | PPI |
| MS.gene44169 | MS.gene02757 | PPI |
| MS.gene44169 | MS.gene052932 | PPI |
| MS.gene44169 | MS.gene82750 | PPI |
| MS.gene44169 | MS.gene065513 | PPI |
| MS.gene44169 | MS.gene50365 | PPI |
| MS.gene44169 | MS.gene027060 | PPI |
| MS.gene44169 | MS.gene48916 | PPI |
| MS.gene44169 | MS.gene003352 | PPI |
| MS.gene44169 | MS.gene45857 | PPI |
| MS.gene038424 | MS.gene44169 | PPI |
| MS.gene44169 | MS.gene22643 | PPI |
| MS.gene48256 | MS.gene44169 | PPI |
| MS.gene44169 | MS.gene22645 | PPI |
| MS.gene44169 | MS.gene90588 | PPI |
| MS.gene44169 | MS.gene81965 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44169.t1 | MTR_1g083790 | 99.683 | 315 | 1 | 0 | 1 | 315 | 1 | 315 | 0.0 | 645 |
| MS.gene44169.t1 | MTR_7g109165 | 66.561 | 314 | 99 | 5 | 1 | 311 | 1 | 311 | 1.22e-135 | 391 |
| MS.gene44169.t1 | MTR_7g084590 | 25.097 | 259 | 157 | 7 | 83 | 320 | 21 | 263 | 1.69e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44169.t1 | AT3G05710 | 76.418 | 335 | 65 | 3 | 1 | 325 | 1 | 331 | 0.0 | 522 |
| MS.gene44169.t1 | AT3G05710 | 75.821 | 335 | 66 | 3 | 1 | 325 | 1 | 330 | 0.0 | 516 |
| MS.gene44169.t1 | AT5G26980 | 77.982 | 327 | 65 | 5 | 1 | 325 | 1 | 322 | 0.0 | 510 |
| MS.gene44169.t1 | AT5G26980 | 77.982 | 327 | 65 | 5 | 1 | 325 | 1 | 322 | 0.0 | 510 |
| MS.gene44169.t1 | AT5G26980 | 77.982 | 327 | 65 | 5 | 1 | 325 | 1 | 322 | 0.0 | 510 |
| MS.gene44169.t1 | AT4G02195 | 64.220 | 327 | 111 | 4 | 1 | 325 | 1 | 323 | 1.52e-151 | 428 |
Find 68 sgRNAs with CRISPR-Local
Find 321 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGACCTTCTGCAATTGTTTA+AGG | 0.154574 | 1.3:-59382278 | None:intergenic |
| GTTGGTTCTGTTAATCATTA+AGG | 0.187645 | 1.3:+59382465 | MS.gene44169:CDS |
| GGAGGCAGCCCCACAGTAAT+TGG | 0.282740 | 1.3:-59379794 | None:intergenic |
| GGCAGAGAGAACTCAGAAAA+AGG | 0.288965 | 1.3:+59382393 | MS.gene44169:intron |
| TATCATGTGCTTTGTTATGT+TGG | 0.361395 | 1.3:+59382447 | MS.gene44169:CDS |
| ATCTCCAAACGACGGCATTA+AGG | 0.369271 | 1.3:-59379906 | None:intergenic |
| CTGCGGAGACTTGCTTCTGC+AGG | 0.409691 | 1.3:+59380004 | MS.gene44169:CDS |
| AGATGATGACTTGGACAATA+TGG | 0.409826 | 1.3:+59381633 | MS.gene44169:CDS |
| TACCTCCTCTCGCGGTGGTC+CGG | 0.424937 | 1.3:+59378083 | MS.gene44169:CDS |
| TTCCATTCATGTTAATCTCC+AGG | 0.430908 | 1.3:-59381594 | None:intergenic |
| TGTGGGGCTGCCTCCAGCAT+GGG | 0.434854 | 1.3:+59379802 | MS.gene44169:CDS |
| CAACTTATTTGAAGCGCCTC+AGG | 0.446869 | 1.3:+59381079 | MS.gene44169:CDS |
| GTGCTGACCAATTCGATTAC+CGG | 0.448177 | 1.3:-59378102 | None:intergenic |
| AAGGCCTTAATGCCGTCGTT+TGG | 0.451834 | 1.3:+59379902 | MS.gene44169:CDS |
| CGAGCTTGCTCAGATTATGA+AGG | 0.465210 | 1.3:+59382083 | MS.gene44169:CDS |
| TAAGGCCTTCGCATGAGCCT+TGG | 0.469990 | 1.3:-59379888 | None:intergenic |
| CCGATGATCCTGGTGGTTCA+AGG | 0.471361 | 1.3:+59378166 | MS.gene44169:CDS |
| GGGGCTGCCTCCAGCATGGG+TGG | 0.473862 | 1.3:+59379805 | MS.gene44169:CDS |
| GGTTTAAATCCAATTACTGT+GGG | 0.477788 | 1.3:+59379785 | MS.gene44169:CDS |
| CGGTGGTCCGGTAATCGAAT+TGG | 0.480133 | 1.3:+59378095 | MS.gene44169:CDS |
| TGCTTCTGCAGGGCCTTCTG+AGG | 0.500982 | 1.3:+59380015 | MS.gene44169:CDS |
| AAGCGGAGCATAAGAGCGAT+TGG | 0.501678 | 1.3:-59378139 | None:intergenic |
| CTGTGGGGCTGCCTCCAGCA+TGG | 0.507201 | 1.3:+59379801 | MS.gene44169:CDS |
| TCAGATACATCCACCCATGC+TGG | 0.509293 | 1.3:-59379815 | None:intergenic |
| TGCGGAGACTTGCTTCTGCA+GGG | 0.519709 | 1.3:+59380005 | MS.gene44169:CDS |
| GCGAAGATGACGACGGAGCA+CGG | 0.523089 | 1.3:-59378053 | None:intergenic |
| CCGCTTAGTACCGATGATCC+TGG | 0.524029 | 1.3:+59378156 | MS.gene44169:CDS |
| CTTCTGAGGATTCCAATGTC+AGG | 0.540775 | 1.3:+59380029 | MS.gene44169:CDS |
| GCCGTCGTTTGGAGATGGTA+AGG | 0.544395 | 1.3:+59379913 | MS.gene44169:CDS |
| AGCGGAGCATAAGAGCGATT+GGG | 0.546694 | 1.3:-59378138 | None:intergenic |
| TTAATGCCGTCGTTTGGAGA+TGG | 0.553207 | 1.3:+59379908 | MS.gene44169:CDS |
| AACTGACTTGATAAAGAGAT+CGG | 0.558407 | 1.3:+59379973 | MS.gene44169:CDS |
| GGGTCAAGATGGAGTTGACC+TGG | 0.559696 | 1.3:+59381576 | MS.gene44169:intron |
| GATCTACAGAGAGGCTCTGA+AGG | 0.565812 | 1.3:-59381041 | None:intergenic |
| CCTTGAACCACCAGGATCAT+CGG | 0.569373 | 1.3:-59378166 | None:intergenic |
| GACCTGGAGATTAACATGAA+TGG | 0.572532 | 1.3:+59381592 | MS.gene44169:CDS |
| ACGATGATGCAGGGTCAAGA+TGG | 0.577379 | 1.3:+59381565 | MS.gene44169:intron |
| GATATTTAACGAGCATCAGA+TGG | 0.584575 | 1.3:+59381891 | MS.gene44169:intron |
| TAAATATGAAGATGATGACT+TGG | 0.585064 | 1.3:+59381624 | MS.gene44169:CDS |
| GGGTTTAAATCCAATTACTG+TGG | 0.588018 | 1.3:+59379784 | MS.gene44169:CDS |
| ATAGTCTATTCTATCAACAA+TGG | 0.590977 | 1.3:-59382220 | None:intergenic |
| GTTGTCCAAGGCTCATGCGA+AGG | 0.595799 | 1.3:+59379883 | MS.gene44169:CDS |
| AGACTATAACATTCAGAATG+TGG | 0.601971 | 1.3:+59382236 | MS.gene44169:CDS |
| GAATGTGGCAACCACAGTTG+AGG | 0.603499 | 1.3:+59382251 | MS.gene44169:CDS |
| CTGACATTGGAATCCTCAGA+AGG | 0.605361 | 1.3:-59380028 | None:intergenic |
| GTGGCAACCACAGTTGAGGA+TGG | 0.612552 | 1.3:+59382255 | MS.gene44169:CDS |
| TACCGGACCACCGCGAGAGG+AGG | 0.619945 | 1.3:-59378085 | None:intergenic |
| CCACCGCGAGAGGAGGTAGA+CGG | 0.620622 | 1.3:-59378078 | None:intergenic |
| TTTAAGGCCATCCTCAACTG+TGG | 0.620825 | 1.3:-59382262 | None:intergenic |
| TGGCCTTAAACAATTGCAGA+AGG | 0.633448 | 1.3:+59382275 | MS.gene44169:CDS |
| AAAGAGTACCTTGAACCACC+AGG | 0.637073 | 1.3:-59378174 | None:intergenic |
| CCGTCTACCTCCTCTCGCGG+TGG | 0.646893 | 1.3:+59378078 | MS.gene44169:CDS |
| ATCAGTACTAGTCATAGACC+AGG | 0.646952 | 1.3:+59382110 | MS.gene44169:CDS |
| GATTACCGGACCACCGCGAG+AGG | 0.656759 | 1.3:-59378088 | None:intergenic |
| GATACATCCACCCATGCTGG+AGG | 0.661774 | 1.3:-59379812 | None:intergenic |
| CCGCCGTCTACCTCCTCTCG+CGG | 0.666831 | 1.3:+59378075 | MS.gene44169:CDS |
| TCGGAATCTGAATGGCGACG+AGG | 0.676673 | 1.3:+59377983 | None:intergenic |
| TTAGAGACTCAATAGCATGT+TGG | 0.680372 | 1.3:-59379940 | None:intergenic |
| AGAGATCGGAGAAGAGACTG+CGG | 0.681249 | 1.3:+59379987 | MS.gene44169:CDS |
| TCCTTACCATCTCCAAACGA+CGG | 0.691112 | 1.3:-59379914 | None:intergenic |
| CCAGGATCATCGGTACTAAG+CGG | 0.695962 | 1.3:-59378156 | None:intergenic |
| GTTTAAATCCAATTACTGTG+GGG | 0.707617 | 1.3:+59379786 | MS.gene44169:CDS |
| GCGATTGGGATTAAGAAGCG+AGG | 0.709817 | 1.3:-59378124 | None:intergenic |
| CTTAGTACCGATGATCCTGG+TGG | 0.710981 | 1.3:+59378159 | MS.gene44169:CDS |
| GACGGCGGCGAAGATGACGA+CGG | 0.733957 | 1.3:-59378060 | None:intergenic |
| CCGCGAGAGGAGGTAGACGG+CGG | 0.734166 | 1.3:-59378075 | None:intergenic |
| TCTTGCGAAGATCTACAGAG+AGG | 0.735622 | 1.3:-59381050 | None:intergenic |
| TATTGAGTCTCTAACACACG+AGG | 0.747213 | 1.3:+59379949 | MS.gene44169:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAAAAATAAAATAACACA+CGG | - | chr1.3:59378288-59378307 | None:intergenic | 10.0% |
| !! | TATTAATAAATGAAAAATAG+TGG | - | chr1.3:59381137-59381156 | None:intergenic | 10.0% |
| !! | TCCAAATAATAAAATATAAA+AGG | + | chr1.3:59380299-59380318 | MS.gene44169:intron | 10.0% |
| !!! | AATAAAATTGCAATTTTTTT+AGG | + | chr1.3:59381162-59381181 | MS.gene44169:intron | 10.0% |
| !!! | ATAAAATTGCAATTTTTTTA+GGG | + | chr1.3:59381163-59381182 | MS.gene44169:intron | 10.0% |
| !!! | ATTTAATTTCATATTTTAAC+AGG | - | chr1.3:59378701-59378720 | None:intergenic | 10.0% |
| !!! | TATTTTATTCATCATTTTTT+GGG | + | chr1.3:59379590-59379609 | MS.gene44169:intron | 10.0% |
| !!! | TCCTTTTATATTTTATTATT+TGG | - | chr1.3:59380303-59380322 | None:intergenic | 10.0% |
| !!! | TTATTTTATTCATCATTTTT+TGG | + | chr1.3:59379589-59379608 | MS.gene44169:intron | 10.0% |
| !! | AAATTAAAATGATTCGAAAA+AGG | - | chr1.3:59380881-59380900 | None:intergenic | 15.0% |
| !! | AATATGAAATTAAATGCAAT+CGG | + | chr1.3:59378706-59378725 | MS.gene44169:intron | 15.0% |
| !! | AATGATTCATTAATACAAAA+AGG | + | chr1.3:59378305-59378324 | MS.gene44169:intron | 15.0% |
| !! | ATATCTAGATATAAATGATT+TGG | - | chr1.3:59381876-59381895 | None:intergenic | 15.0% |
| !! | TTTCACATAATACTTATAAA+TGG | + | chr1.3:59380083-59380102 | MS.gene44169:intron | 15.0% |
| !!! | ATGGTAATTATTTTGTTTAT+GGG | + | chr1.3:59382364-59382383 | MS.gene44169:intron | 15.0% |
| !!! | TAAAATTGCAATTTTTTTAG+GGG | + | chr1.3:59381164-59381183 | MS.gene44169:intron | 15.0% |
| !!! | TATGGTAATTATTTTGTTTA+TGG | + | chr1.3:59382363-59382382 | MS.gene44169:intron | 15.0% |
| !!! | TTTCGAATCATTTTAATTTA+TGG | + | chr1.3:59380882-59380901 | MS.gene44169:intron | 15.0% |
| !! | AAACACTAAAAAAAGAAACA+TGG | + | chr1.3:59380334-59380353 | MS.gene44169:intron | 20.0% |
| !! | AAATTAAGAGAAAAAAGATC+AGG | + | chr1.3:59378808-59378827 | MS.gene44169:intron | 20.0% |
| !! | AAATTTAGTTGACATTATTC+TGG | + | chr1.3:59380500-59380519 | MS.gene44169:intron | 20.0% |
| !! | AATCTATGTCAAAACAAAAA+TGG | + | chr1.3:59380819-59380838 | MS.gene44169:intron | 20.0% |
| !! | AGAATAATGTCAACTAAATT+TGG | - | chr1.3:59380501-59380520 | None:intergenic | 20.0% |
| !! | ATCAATCTAATTATTTGGAA+TGG | - | chr1.3:59378493-59378512 | None:intergenic | 20.0% |
| !! | TCGAGATCAAAATTAATAAT+AGG | + | chr1.3:59379195-59379214 | MS.gene44169:intron | 20.0% |
| !! | TTTAAGGAATATTATACTGA+AGG | + | chr1.3:59381438-59381457 | MS.gene44169:intron | 20.0% |
| !!! | ATTAATAATAGGTTTTCAGT+AGG | + | chr1.3:59379206-59379225 | MS.gene44169:intron | 20.0% |
| !!! | GTTTCTTTTTTTAGTGTTTA+TGG | - | chr1.3:59380333-59380352 | None:intergenic | 20.0% |
| !!! | TAGGATATTAATTGTTTTTG+CGG | + | chr1.3:59379752-59379771 | MS.gene44169:intron | 20.0% |
| ! | AAGAGAGAAATTATAATGAG+TGG | + | chr1.3:59380257-59380276 | MS.gene44169:intron | 25.0% |
| ! | AATAATAAGTCACAGAAACT+AGG | - | chr1.3:59380661-59380680 | None:intergenic | 25.0% |
| ! | AATCAAGTTAAAACCTTTGT+GGG | + | chr1.3:59380147-59380166 | MS.gene44169:intron | 25.0% |
| ! | AGAGAGAAATTATAATGAGT+GGG | + | chr1.3:59380258-59380277 | MS.gene44169:intron | 25.0% |
| ! | AGTACTCTAAATTTGAATTG+AGG | - | chr1.3:59381291-59381310 | None:intergenic | 25.0% |
| ! | AGTAGAAAAAGAAGAGAAAA+AGG | - | chr1.3:59382302-59382321 | None:intergenic | 25.0% |
| ! | ATAGTCTATTCTATCAACAA+TGG | - | chr1.3:59382223-59382242 | None:intergenic | 25.0% |
| ! | ATATGAGACTTAGTAATTGT+AGG | + | chr1.3:59379733-59379752 | MS.gene44169:intron | 25.0% |
| ! | ATGAAAATCCATATACTTAG+TGG | - | chr1.3:59381542-59381561 | None:intergenic | 25.0% |
| ! | ATTGAAAGATGAAGTCATAT+TGG | + | chr1.3:59378356-59378375 | MS.gene44169:intron | 25.0% |
| ! | GATGGATCAATCTAATTATT+TGG | - | chr1.3:59378498-59378517 | None:intergenic | 25.0% |
| ! | GCTTCAAAACAATTGTATTT+AGG | + | chr1.3:59378549-59378568 | MS.gene44169:intron | 25.0% |
| ! | GTACTCTAAATTTGAATTGA+GGG | - | chr1.3:59381290-59381309 | None:intergenic | 25.0% |
| ! | GTGAATAAGTAGGTAATAAA+CGG | - | chr1.3:59381747-59381766 | None:intergenic | 25.0% |
| ! | TAAAAGTAAAGCAAAAGGAA+TGG | + | chr1.3:59379388-59379407 | MS.gene44169:intron | 25.0% |
| ! | TAAATATGAAGATGATGACT+TGG | + | chr1.3:59381624-59381643 | MS.gene44169:CDS | 25.0% |
| ! | TAAGTTCTCACTTACAATTA+AGG | + | chr1.3:59380845-59380864 | MS.gene44169:intron | 25.0% |
| ! | TAATCAAGTTAAAACCTTTG+TGG | + | chr1.3:59380146-59380165 | MS.gene44169:intron | 25.0% |
| ! | TACAAAAAGGAAATCACATT+TGG | + | chr1.3:59378318-59378337 | MS.gene44169:intron | 25.0% |
| ! | TCATTATATCCATCTATTAC+TGG | - | chr1.3:59379548-59379567 | None:intergenic | 25.0% |
| ! | TTAACAAAGCACAAAACTAA+GGG | - | chr1.3:59380706-59380725 | None:intergenic | 25.0% |
| ! | TTACACACAATCTAAAAAGA+TGG | - | chr1.3:59378516-59378535 | None:intergenic | 25.0% |
| ! | TTTAACAAAGCACAAAACTA+AGG | - | chr1.3:59380707-59380726 | None:intergenic | 25.0% |
| ! | TTTATTACCTACTTATTCAC+CGG | + | chr1.3:59381747-59381766 | MS.gene44169:intron | 25.0% |
| !! | CTCTTCTTTTTCTACTATTT+TGG | + | chr1.3:59382306-59382325 | MS.gene44169:intron | 25.0% |
| !!! | TTCCTTTTGCTTTACTTTTA+CGG | - | chr1.3:59379388-59379407 | None:intergenic | 25.0% |
| AATATGATCATTCCATGTAC+TGG | + | chr1.3:59381803-59381822 | MS.gene44169:intron | 30.0% | |
| AATTAGAATTGCCTTGGAAA+GGG | + | chr1.3:59379613-59379632 | MS.gene44169:intron | 30.0% | |
| AGACTATAACATTCAGAATG+TGG | + | chr1.3:59382236-59382255 | MS.gene44169:CDS | 30.0% | |
| AGAGAAATTATAATGAGTGG+GGG | + | chr1.3:59380260-59380279 | MS.gene44169:intron | 30.0% | |
| AGATTCTTCCAACAACATAT+GGG | - | chr1.3:59380946-59380965 | None:intergenic | 30.0% | |
| ATCAGCATGTACATTTAGTT+AGG | - | chr1.3:59379502-59379521 | None:intergenic | 30.0% | |
| ATGAAATTAAATGCAATCGG+TGG | + | chr1.3:59378709-59378728 | MS.gene44169:intron | 30.0% | |
| ATTCTGACAATATCTCCATT+GGG | + | chr1.3:59378980-59378999 | MS.gene44169:intron | 30.0% | |
| CAATTAATGCTCAAAACTTC+CGG | - | chr1.3:59381769-59381788 | None:intergenic | 30.0% | |
| CTAAAATGTAACACACTTGA+AGG | - | chr1.3:59380526-59380545 | None:intergenic | 30.0% | |
| CTAAGGCAATAACTGAATTA+AGG | - | chr1.3:59378953-59378972 | None:intergenic | 30.0% | |
| GAGAGAAATTATAATGAGTG+GGG | + | chr1.3:59380259-59380278 | MS.gene44169:intron | 30.0% | |
| GGTTTAAATCCAATTACTGT+GGG | + | chr1.3:59379785-59379804 | MS.gene44169:CDS | 30.0% | |
| GTTACATACCACTAAGTATA+TGG | + | chr1.3:59381531-59381550 | MS.gene44169:intron | 30.0% | |
| GTTGTTGGAAGAATCTATAA+TGG | + | chr1.3:59380950-59380969 | MS.gene44169:intron | 30.0% | |
| GTTTAAATCCAATTACTGTG+GGG | + | chr1.3:59379786-59379805 | MS.gene44169:CDS | 30.0% | |
| TACAGTTTCTGTGAATATAC+TGG | - | chr1.3:59378431-59378450 | None:intergenic | 30.0% | |
| TACCGTAAAAGTAAAGCAAA+AGG | + | chr1.3:59379383-59379402 | MS.gene44169:intron | 30.0% | |
| TAGATTCTTCCAACAACATA+TGG | - | chr1.3:59380947-59380966 | None:intergenic | 30.0% | |
| TCAGCATGTACATTTAGTTA+GGG | - | chr1.3:59379501-59379520 | None:intergenic | 30.0% | |
| TGAAATTAAATGCAATCGGT+GGG | + | chr1.3:59378710-59378729 | MS.gene44169:intron | 30.0% | |
| TTCACTATTAGCTGATGATA+GGG | - | chr1.3:59381388-59381407 | None:intergenic | 30.0% | |
| TTCTTATTCTTCGAAACCAT+TGG | + | chr1.3:59379160-59379179 | MS.gene44169:intron | 30.0% | |
| TTTCTGTGAATATACTGGTA+TGG | - | chr1.3:59378426-59378445 | None:intergenic | 30.0% | |
| ! | AGAGGATGTCAATTTTCATA+AGG | - | chr1.3:59382188-59382207 | None:intergenic | 30.0% |
| ! | GAGGATGTCAATTTTCATAA+GGG | - | chr1.3:59382187-59382206 | None:intergenic | 30.0% |
| ! | GCAGATATGTGTTTTATATG+TGG | - | chr1.3:59380429-59380448 | None:intergenic | 30.0% |
| ! | TATCATGTGCTTTGTTATGT+TGG | + | chr1.3:59382447-59382466 | MS.gene44169:CDS | 30.0% |
| ! | TCAATGCATCTCTGTATTTT+CGG | - | chr1.3:59378026-59378045 | None:intergenic | 30.0% |
| ! | TGAGCATTTTCTTATTCTGT+TGG | + | chr1.3:59380990-59381009 | MS.gene44169:intron | 30.0% |
| ! | TTTCATTTTACGATGATGCA+GGG | + | chr1.3:59381556-59381575 | MS.gene44169:intron | 30.0% |
| ! | TTTTCATTTTACGATGATGC+AGG | + | chr1.3:59381555-59381574 | MS.gene44169:intron | 30.0% |
| !! | AACTGACTTGATAAAGAGAT+CGG | + | chr1.3:59379973-59379992 | MS.gene44169:CDS | 30.0% |
| !! | ACACCAAATAATTTGTTCTG+AGG | + | chr1.3:59380399-59380418 | MS.gene44169:intron | 30.0% |
| !! | CACCAAATAATTTGTTCTGA+GGG | + | chr1.3:59380400-59380419 | MS.gene44169:intron | 30.0% |
| !! | CTCAATTGATTCACAGTTTT+TGG | + | chr1.3:59382028-59382047 | MS.gene44169:intron | 30.0% |
| !! | GTTGGTTCTGTTAATCATTA+AGG | + | chr1.3:59382465-59382484 | MS.gene44169:CDS | 30.0% |
| !! | TACTTGGCATTTTGCTTTTA+AGG | + | chr1.3:59381422-59381441 | MS.gene44169:intron | 30.0% |
| !!! | AGCTTCACTTTTTTTAAGCT+TGG | - | chr1.3:59381917-59381936 | None:intergenic | 30.0% |
| !!! | CAATTTTTTTAGGGGTTTAC+TGG | + | chr1.3:59381172-59381191 | MS.gene44169:intron | 30.0% |
| !!! | TGGTGATGCATTTTAGTTTT+TGG | + | chr1.3:59380103-59380122 | MS.gene44169:intron | 30.0% |
| !!! | TTTTTGGTGTTTGCTTTTAC+AGG | + | chr1.3:59382044-59382063 | MS.gene44169:intron | 30.0% |
| AAAAAGAGATCCAACAGGTA+AGG | + | chr1.3:59381953-59381972 | MS.gene44169:intron | 35.0% | |
| AAAACTTCCGGTGAATAAGT+AGG | - | chr1.3:59381757-59381776 | None:intergenic | 35.0% | |
| AACAAGTGGTGAAGTATACT+TGG | + | chr1.3:59381406-59381425 | MS.gene44169:intron | 35.0% | |
| AAGAGAAAAAAGATCAGGAG+AGG | + | chr1.3:59378813-59378832 | MS.gene44169:intron | 35.0% | |
| AAGAGAAAAAGAGATCCAAC+AGG | + | chr1.3:59381948-59381967 | MS.gene44169:CDS | 35.0% | |
| AAGTAAAGCAAAAGGAATGG+AGG | + | chr1.3:59379391-59379410 | MS.gene44169:intron | 35.0% | |
| AATTGACATCCTCTATCTAC+AGG | + | chr1.3:59382194-59382213 | MS.gene44169:intron | 35.0% | |
| AGTAGGTAATAAACGGCATA+AGG | - | chr1.3:59381740-59381759 | None:intergenic | 35.0% | |
| ATATCATACCAGTGATACCA+TGG | - | chr1.3:59380201-59380220 | None:intergenic | 35.0% | |
| ATCAGCTAATAGTGAACAAG+TGG | + | chr1.3:59381392-59381411 | MS.gene44169:intron | 35.0% | |
| ATGGATTCTCCATTCAAAAG+TGG | + | chr1.3:59380353-59380372 | MS.gene44169:intron | 35.0% | |
| ATTAGAATTGCCTTGGAAAG+GGG | + | chr1.3:59379614-59379633 | MS.gene44169:intron | 35.0% | |
| ATTCTCCATTCAAAAGTGGA+AGG | + | chr1.3:59380357-59380376 | MS.gene44169:intron | 35.0% | |
| ATTGACATCCTCTATCTACA+GGG | + | chr1.3:59382195-59382214 | MS.gene44169:intron | 35.0% | |
| CACAATCATCCAGTAATAGA+TGG | + | chr1.3:59379536-59379555 | MS.gene44169:intron | 35.0% | |
| CTTATAAAGTGAACTTCGCA+AGG | + | chr1.3:59380557-59380576 | MS.gene44169:intron | 35.0% | |
| CTTCTCCGATTGCATTTAAA+GGG | - | chr1.3:59378784-59378803 | None:intergenic | 35.0% | |
| GAAAGATGAAGTCATATTGG+AGG | + | chr1.3:59378359-59378378 | MS.gene44169:intron | 35.0% | |
| GAATTAGAATTGCCTTGGAA+AGG | + | chr1.3:59379612-59379631 | MS.gene44169:intron | 35.0% | |
| GATATTTAACGAGCATCAGA+TGG | + | chr1.3:59381891-59381910 | MS.gene44169:intron | 35.0% | |
| GATTCTGACAATATCTCCAT+TGG | + | chr1.3:59378979-59378998 | MS.gene44169:intron | 35.0% | |
| GATTTGGATTGCATTGTTGA+CGG | + | chr1.3:59378612-59378631 | MS.gene44169:intron | 35.0% | |
| GGGTTTAAATCCAATTACTG+TGG | + | chr1.3:59379784-59379803 | MS.gene44169:CDS | 35.0% | |
| GTAACATGTCATTGTCAGTT+GGG | - | chr1.3:59379475-59379494 | None:intergenic | 35.0% | |
| GTCCCTCAGAACAAATTATT+TGG | - | chr1.3:59380405-59380424 | None:intergenic | 35.0% | |
| GTTCACTATTAGCTGATGAT+AGG | - | chr1.3:59381389-59381408 | None:intergenic | 35.0% | |
| TACCAAGCAGCACTAAAAAT+AGG | - | chr1.3:59380471-59380490 | None:intergenic | 35.0% | |
| TAGACTTTAAGTGGTTGAAG+TGG | + | chr1.3:59379048-59379067 | MS.gene44169:intron | 35.0% | |
| TCTTCTCCGATTGCATTTAA+AGG | - | chr1.3:59378785-59378804 | None:intergenic | 35.0% | |
| TGTAACATGTCATTGTCAGT+TGG | - | chr1.3:59379476-59379495 | None:intergenic | 35.0% | |
| TTAGAGACTCAATAGCATGT+TGG | - | chr1.3:59379943-59379962 | None:intergenic | 35.0% | |
| TTCAACCACTTAAAGTCTAC+AGG | - | chr1.3:59379047-59379066 | None:intergenic | 35.0% | |
| TTCACATGTATGCATGTTAC+AGG | + | chr1.3:59379708-59379727 | MS.gene44169:intron | 35.0% | |
| TTCCATTCATGTTAATCTCC+AGG | - | chr1.3:59381597-59381616 | None:intergenic | 35.0% | |
| TTTGGGAATTAGAATTGCCT+TGG | + | chr1.3:59379607-59379626 | MS.gene44169:intron | 35.0% | |
| ! | AGATGATGACTTGGACAATA+TGG | + | chr1.3:59381633-59381652 | MS.gene44169:CDS | 35.0% |
| ! | CATTTGTTCCTTGGCATTTT+TGG | + | chr1.3:59379320-59379339 | MS.gene44169:intron | 35.0% |
| ! | TCTCTGTCTCTTTTGCTTTA+TGG | + | chr1.3:59382345-59382364 | MS.gene44169:intron | 35.0% |
| ! | TGAAGGAAAGATTTTCCCAA+TGG | - | chr1.3:59378998-59379017 | None:intergenic | 35.0% |
| ! | TGCTACATTTTCAATCGTGA+TGG | - | chr1.3:59379262-59379281 | None:intergenic | 35.0% |
| ! | TGTCAATTTTCATAAGGGTG+TGG | - | chr1.3:59382182-59382201 | None:intergenic | 35.0% |
| ! | TTTTCAGTAGGATGAAAGAC+TGG | + | chr1.3:59379218-59379237 | MS.gene44169:intron | 35.0% |
| !! | AAATGATTTGGTAGCATCAG+TGG | - | chr1.3:59381864-59381883 | None:intergenic | 35.0% |
| !! | AACAAGTATCGAAGTTTCGA+AGG | - | chr1.3:59379647-59379666 | None:intergenic | 35.0% |
| !! | ACAAGTATCGAAGTTTCGAA+GGG | - | chr1.3:59379646-59379665 | None:intergenic | 35.0% |
| !! | TATTTTGTTTATGGGCATGC+AGG | + | chr1.3:59382372-59382391 | MS.gene44169:intron | 35.0% |
| !! | TGCAGAAATCAAGGCATTTT+TGG | - | chr1.3:59380923-59380942 | None:intergenic | 35.0% |
| !!! | ATCCTATTTTTAGTGCTGCT+TGG | + | chr1.3:59380466-59380485 | MS.gene44169:intron | 35.0% |
| !!! | CATATTTTAACAGGAGCTCA+TGG | - | chr1.3:59378692-59378711 | None:intergenic | 35.0% |
| !!! | GACTTGTCACTTTTTTTTCC+TGG | + | chr1.3:59381332-59381351 | MS.gene44169:intron | 35.0% |
| !!! | GTCACTTTTTTTTCCTGGTA+CGG | + | chr1.3:59381337-59381356 | MS.gene44169:intron | 35.0% |
| !!! | TCACTTTTTTTTCCTGGTAC+GGG | + | chr1.3:59381338-59381357 | MS.gene44169:intron | 35.0% |
| AAAAATGGCAGAGTTGTCCA+AGG | + | chr1.3:59379871-59379890 | MS.gene44169:CDS | 40.0% | |
| AATGCCAAGGAACAAATGTG+TGG | - | chr1.3:59379318-59379337 | None:intergenic | 40.0% | |
| ACATATGGGTGCAGAAATCA+AGG | - | chr1.3:59380932-59380951 | None:intergenic | 40.0% | |
| AGAGAGCAAGGGAATAAGTA+AGG | - | chr1.3:59381479-59381498 | None:intergenic | 40.0% | |
| AGATTGAAGAGAACATGGAG+TGG | - | chr1.3:59380628-59380647 | None:intergenic | 40.0% | |
| ATCAGTACTAGTCATAGACC+AGG | + | chr1.3:59382110-59382129 | MS.gene44169:CDS | 40.0% | |
| ATTTCAGAAGTTGCACCTTC+TGG | + | chr1.3:59379285-59379304 | MS.gene44169:intron | 40.0% | |
| CAATGTCAGGAAAAATGTGC+AGG | + | chr1.3:59380042-59380061 | MS.gene44169:CDS | 40.0% | |
| CACTTCCTGTAGACTTTAAG+TGG | + | chr1.3:59379039-59379058 | MS.gene44169:intron | 40.0% | |
| CTGAGCTTAAGATCCAAGAA+CGG | + | chr1.3:59379074-59379093 | MS.gene44169:intron | 40.0% | |
| GAAATTATAATGAGTGGGGG+AGG | + | chr1.3:59380263-59380282 | MS.gene44169:intron | 40.0% | |
| GACCTGGAGATTAACATGAA+TGG | + | chr1.3:59381592-59381611 | MS.gene44169:CDS | 40.0% | |
| GAGGTGTGAAATCATCAATG+AGG | + | chr1.3:59378585-59378604 | MS.gene44169:intron | 40.0% | |
| GATTGAAGAGAACATGGAGT+GGG | - | chr1.3:59380627-59380646 | None:intergenic | 40.0% | |
| GCAGAGAGAACTCAGAAAAA+GGG | + | chr1.3:59382394-59382413 | MS.gene44169:CDS | 40.0% | |
| GGACCTTCTGCAATTGTTTA+AGG | - | chr1.3:59382281-59382300 | None:intergenic | 40.0% | |
| GTAATAACCTTGTCCGTTCT+TGG | - | chr1.3:59379090-59379109 | None:intergenic | 40.0% | |
| GTGAAATCATCAATGAGGAG+CGG | + | chr1.3:59378590-59378609 | MS.gene44169:intron | 40.0% | |
| TATTGAGTCTCTAACACACG+AGG | + | chr1.3:59379949-59379968 | MS.gene44169:CDS | 40.0% | |
| TCGATTGATGAAGAGACCAA+TGG | - | chr1.3:59379179-59379198 | None:intergenic | 40.0% | |
| TTAAGATCCAAGAACGGACA+AGG | + | chr1.3:59379080-59379099 | MS.gene44169:intron | 40.0% | |
| TTTCTGCACCCATATGTTGT+TGG | + | chr1.3:59380935-59380954 | MS.gene44169:intron | 40.0% | |
| ! | ACGGTATCAAATCTCCCTTT+TGG | - | chr1.3:59379369-59379388 | None:intergenic | 40.0% |
| ! | ATCTCTTGCATTGAGTTGCA+TGG | + | chr1.3:59380736-59380755 | MS.gene44169:intron | 40.0% |
| ! | CCATCTGCTGATTATACCAT+GGG | + | chr1.3:59378458-59378477 | MS.gene44169:intron | 40.0% |
| ! | CGGTATCAAATCTCCCTTTT+GGG | - | chr1.3:59379368-59379387 | None:intergenic | 40.0% |
| ! | CTGCACATTTTTCCTGACAT+TGG | - | chr1.3:59380044-59380063 | None:intergenic | 40.0% |
| ! | GGTATCAAATCTCCCTTTTG+GGG | - | chr1.3:59379367-59379386 | None:intergenic | 40.0% |
| ! | TCCATCTGCTGATTATACCA+TGG | + | chr1.3:59378457-59378476 | MS.gene44169:intron | 40.0% |
| ! | TGCAACTTTTCCTTACCTGT+TGG | - | chr1.3:59381966-59381985 | None:intergenic | 40.0% |
| ! | TGGCCTTAAACAATTGCAGA+AGG | + | chr1.3:59382275-59382294 | MS.gene44169:CDS | 40.0% |
| ! | TTGCATTGAGTTGCATGGTT+GGG | + | chr1.3:59380741-59380760 | MS.gene44169:intron | 40.0% |
| ! | TTTTAACAGGAGCTCATGGT+GGG | - | chr1.3:59378688-59378707 | None:intergenic | 40.0% |
| !! | ATTTTAACAGGAGCTCATGG+TGG | - | chr1.3:59378689-59378708 | None:intergenic | 40.0% |
| !! | TGTTTTTGCGGATGCAGTAA+GGG | + | chr1.3:59379764-59379783 | MS.gene44169:intron | 40.0% |
| !! | TTCGTCCTTCCACTTTTGAA+TGG | - | chr1.3:59380365-59380384 | None:intergenic | 40.0% |
| !!! | TTGTTTTTGCGGATGCAGTA+AGG | + | chr1.3:59379763-59379782 | MS.gene44169:intron | 40.0% |
| AAAGTGAACTTCGCAAGGAG+AGG | + | chr1.3:59380562-59380581 | MS.gene44169:intron | 45.0% | |
| AACTCAGAAAAAGGGAGGCA+TGG | + | chr1.3:59382402-59382421 | MS.gene44169:CDS | 45.0% | |
| AACTTCGCAAGGAGAGGATT+AGG | + | chr1.3:59380568-59380587 | MS.gene44169:intron | 45.0% | |
| AAGGAACAAATGTGTGGAGC+TGG | - | chr1.3:59379312-59379331 | None:intergenic | 45.0% | |
| AATCGACTACGTCCAGTACA+TGG | - | chr1.3:59381818-59381837 | None:intergenic | 45.0% | |
| ACCTTTGTGCTTCTCGTGAA+GGG | + | chr1.3:59381690-59381709 | MS.gene44169:intron | 45.0% | |
| AGCTCCACACATTTGTTCCT+TGG | + | chr1.3:59379311-59379330 | MS.gene44169:intron | 45.0% | |
| AGGAGAGAGAAAACTCCACA+TGG | + | chr1.3:59378869-59378888 | MS.gene44169:intron | 45.0% | |
| AGGGAAAAAACCCCTTTCCA+AGG | - | chr1.3:59379627-59379646 | None:intergenic | 45.0% | |
| AGTCACAGAAACTAGGACAG+AGG | - | chr1.3:59380654-59380673 | None:intergenic | 45.0% | |
| AGTTGTTATCTCCTCGCAGA+AGG | - | chr1.3:59382150-59382169 | None:intergenic | 45.0% | |
| AGTTTGTGATGAGCCCACAA+AGG | - | chr1.3:59380163-59380182 | None:intergenic | 45.0% | |
| ATCTCCAAACGACGGCATTA+AGG | - | chr1.3:59379909-59379928 | None:intergenic | 45.0% | |
| CAATGGTTCCCTGTAGATAG+AGG | - | chr1.3:59382206-59382225 | None:intergenic | 45.0% | |
| CCCATGGTATAATCAGCAGA+TGG | - | chr1.3:59378461-59378480 | None:intergenic | 45.0% | |
| CTAAACGAGTGACTCTACCA+TGG | + | chr1.3:59380181-59380200 | MS.gene44169:intron | 45.0% | |
| CTGACATTGGAATCCTCAGA+AGG | - | chr1.3:59380031-59380050 | None:intergenic | 45.0% | |
| CTTCAGATTCTTCCACACTC+CGG | + | chr1.3:59379013-59379032 | MS.gene44169:intron | 45.0% | |
| GACCAGTTTGATCCATGCTT+CGG | - | chr1.3:59379127-59379146 | None:intergenic | 45.0% | |
| GAGAGAACTCAGAAAAAGGG+AGG | + | chr1.3:59382397-59382416 | MS.gene44169:CDS | 45.0% | |
| GCAAGGAGAGGATTAGGAAA+AGG | + | chr1.3:59380574-59380593 | MS.gene44169:intron | 45.0% | |
| GGCAGAGAGAACTCAGAAAA+AGG | + | chr1.3:59382393-59382412 | MS.gene44169:intron | 45.0% | |
| GGCTGCCCTTTAAATGCAAT+CGG | + | chr1.3:59378776-59378795 | MS.gene44169:intron | 45.0% | |
| GGTATAATCAGCAGATGGAG+AGG | - | chr1.3:59378456-59378475 | None:intergenic | 45.0% | |
| GGTGGAGATTGAAGAGAACA+TGG | - | chr1.3:59380633-59380652 | None:intergenic | 45.0% | |
| GTCAGAATCGCTGACAAAGT+TGG | - | chr1.3:59378923-59378942 | None:intergenic | 45.0% | |
| TACCTTTGTGCTTCTCGTGA+AGG | + | chr1.3:59381689-59381708 | MS.gene44169:intron | 45.0% | |
| TCCTTACCATCTCCAAACGA+CGG | - | chr1.3:59379917-59379936 | None:intergenic | 45.0% | |
| TCTGAGAGAGGATATGCAGA+AGG | - | chr1.3:59378654-59378673 | None:intergenic | 45.0% | |
| TCTTGCGAAGATCTACAGAG+AGG | - | chr1.3:59381053-59381072 | None:intergenic | 45.0% | |
| TGACTCTACCATGGTATCAC+TGG | + | chr1.3:59380190-59380209 | MS.gene44169:intron | 45.0% | |
| TTAATGCCGTCGTTTGGAGA+TGG | + | chr1.3:59379908-59379927 | MS.gene44169:CDS | 45.0% | |
| TTATAATGAGTGGGGGAGGT+CGG | + | chr1.3:59380267-59380286 | MS.gene44169:intron | 45.0% | |
| TTGTCAGAATCGCTGAGCTA+AGG | - | chr1.3:59378970-59378989 | None:intergenic | 45.0% | |
| TTTAACAGGAGCTCATGGTG+GGG | - | chr1.3:59378687-59378706 | None:intergenic | 45.0% | |
| TTTAGGCTACGTACGATGAG+AGG | + | chr1.3:59378566-59378585 | MS.gene44169:intron | 45.0% | |
| ! | AGACTGGTTGAAATCCGTGT+TGG | + | chr1.3:59379234-59379253 | MS.gene44169:intron | 45.0% |
| ! | CAACTTATTTGAAGCGCCTC+AGG | + | chr1.3:59381079-59381098 | MS.gene44169:CDS | 45.0% |
| ! | CGAGCTTGCTCAGATTATGA+AGG | + | chr1.3:59382083-59382102 | MS.gene44169:CDS | 45.0% |
| ! | CTTCTGAGGATTCCAATGTC+AGG | + | chr1.3:59380029-59380048 | MS.gene44169:CDS | 45.0% |
| ! | CTTGCATTGAGTTGCATGGT+TGG | + | chr1.3:59380740-59380759 | MS.gene44169:intron | 45.0% |
| ! | GACTGGTTGAAATCCGTGTT+GGG | + | chr1.3:59379235-59379254 | MS.gene44169:intron | 45.0% |
| ! | GTGCTGACCAATTCGATTAC+CGG | - | chr1.3:59378105-59378124 | None:intergenic | 45.0% |
| ! | TCATCAATGAGGAGCGGATT+TGG | + | chr1.3:59378596-59378615 | MS.gene44169:intron | 45.0% |
| ! | TGCATTGAGTTGCATGGTTG+GGG | + | chr1.3:59380742-59380761 | MS.gene44169:intron | 45.0% |
| ! | TTTAAGGCCATCCTCAACTG+TGG | - | chr1.3:59382265-59382284 | None:intergenic | 45.0% |
| !! | AAAGAGTACCTTGAACCACC+AGG | - | chr1.3:59378177-59378196 | None:intergenic | 45.0% |
| !! | CCTTGGCATTTTTGGAAGCA+GGG | + | chr1.3:59379328-59379347 | MS.gene44169:intron | 45.0% |
| !! | GGGTTGACTTGAATAGAAGC+AGG | - | chr1.3:59380686-59380705 | None:intergenic | 45.0% |
| !! | TCCTTGGCATTTTTGGAAGC+AGG | + | chr1.3:59379327-59379346 | MS.gene44169:intron | 45.0% |
| AAGCGGAGCATAAGAGCGAT+TGG | - | chr1.3:59378142-59378161 | None:intergenic | 50.0% | |
| AAGGCCTTAATGCCGTCGTT+TGG | + | chr1.3:59379902-59379921 | MS.gene44169:CDS | 50.0% | |
| ACGATGATGCAGGGTCAAGA+TGG | + | chr1.3:59381565-59381584 | MS.gene44169:intron | 50.0% | |
| AGAGATCGGAGAAGAGACTG+CGG | + | chr1.3:59379987-59380006 | MS.gene44169:CDS | 50.0% | |
| AGCGGAGCATAAGAGCGATT+GGG | - | chr1.3:59378141-59378160 | None:intergenic | 50.0% | |
| AGCTCAGTTGCATTCGCTAG+TGG | - | chr1.3:59378899-59378918 | None:intergenic | 50.0% | |
| CACAGAAACTAGGACAGAGG+TGG | - | chr1.3:59380651-59380670 | None:intergenic | 50.0% | |
| CACCGAAGCATGGATCAAAC+TGG | + | chr1.3:59379122-59379141 | MS.gene44169:intron | 50.0% | |
| CAGGCAGCAAAAAGAGGTGA+GGG | + | chr1.3:59381098-59381117 | MS.gene44169:intron | 50.0% | |
| CCAGGATCATCGGTACTAAG+CGG | - | chr1.3:59378159-59378178 | None:intergenic | 50.0% | |
| CCCTGCTTCCAAAAATGCCA+AGG | - | chr1.3:59379331-59379350 | None:intergenic | 50.0% | |
| CCTTGAACCACCAGGATCAT+CGG | - | chr1.3:59378169-59378188 | None:intergenic | 50.0% | |
| CCTTGCTCTCTGTCTCTTGT+CGG | + | chr1.3:59381488-59381507 | MS.gene44169:intron | 50.0% | |
| CCTTTGTGCTTCTCGTGAAG+GGG | + | chr1.3:59381691-59381710 | MS.gene44169:intron | 50.0% | |
| CGACAAGAGACAGAGAGCAA+GGG | - | chr1.3:59381490-59381509 | None:intergenic | 50.0% | |
| CGGAGTGTGGAAGAATCTGA+AGG | - | chr1.3:59379015-59379034 | None:intergenic | 50.0% | |
| CTAAAGCTCTCGCATGCACA+TGG | - | chr1.3:59378749-59378768 | None:intergenic | 50.0% | |
| CTTGCTCTCTGTCTCTTGTC+GGG | + | chr1.3:59381489-59381508 | MS.gene44169:intron | 50.0% | |
| CTTTGTGCTTCTCGTGAAGG+GGG | + | chr1.3:59381692-59381711 | MS.gene44169:intron | 50.0% | |
| GAATGTGGCAACCACAGTTG+AGG | + | chr1.3:59382251-59382270 | MS.gene44169:CDS | 50.0% | |
| GCAACGTGCACGCACAAAAA+TGG | + | chr1.3:59379856-59379875 | MS.gene44169:CDS | 50.0% | |
| GCAGCAAGAGAGTGAAGAGA+AGG | + | chr1.3:59378849-59378868 | MS.gene44169:intron | 50.0% | |
| GCGATTGGGATTAAGAAGCG+AGG | - | chr1.3:59378127-59378146 | None:intergenic | 50.0% | |
| GGAATGGTAGTCTAGTCCCA+TGG | - | chr1.3:59378477-59378496 | None:intergenic | 50.0% | |
| GGGAAAGAGATCTCGAGTCT+TGG | + | chr1.3:59381358-59381377 | MS.gene44169:intron | 50.0% | |
| TCAGATACATCCACCCATGC+TGG | - | chr1.3:59379818-59379837 | None:intergenic | 50.0% | |
| TCAGGCAGCAAAAAGAGGTG+AGG | + | chr1.3:59381097-59381116 | MS.gene44169:intron | 50.0% | |
| TGTGCAGTAGTGCCCCAAAA+GGG | + | chr1.3:59379352-59379371 | MS.gene44169:intron | 50.0% | |
| TTAACAGGAGCTCATGGTGG+GGG | - | chr1.3:59378686-59378705 | None:intergenic | 50.0% | |
| TTATCTCCTCGCAGAAGGAG+AGG | - | chr1.3:59382145-59382164 | None:intergenic | 50.0% | |
| ! | GATCTACAGAGAGGCTCTGA+AGG | - | chr1.3:59381044-59381063 | None:intergenic | 50.0% |
| ! | TCACCTCTTTTTGCTGCCTG+AGG | - | chr1.3:59381098-59381117 | None:intergenic | 50.0% |
| ! | TGATCCATGCTTCGGTGTGT+GGG | - | chr1.3:59379119-59379138 | None:intergenic | 50.0% |
| ! | TGCGAGAGCTTTAGTGCACT+AGG | + | chr1.3:59378755-59378774 | MS.gene44169:intron | 50.0% |
| ! | TTGATCCATGCTTCGGTGTG+TGG | - | chr1.3:59379120-59379139 | None:intergenic | 50.0% |
| !! | AAGTCTACAGGAAGTGCTGC+CGG | - | chr1.3:59379035-59379054 | None:intergenic | 50.0% |
| !! | CAATCGTGATGGACCCAACA+CGG | - | chr1.3:59379251-59379270 | None:intergenic | 50.0% |
| !! | CTTAGTACCGATGATCCTGG+TGG | + | chr1.3:59378159-59378178 | MS.gene44169:CDS | 50.0% |
| AAGGAGAGGATCTGCTGACC+TGG | - | chr1.3:59382131-59382150 | None:intergenic | 55.0% | |
| ATGTGTGGAGCTGGACCAGA+AGG | - | chr1.3:59379303-59379322 | None:intergenic | 55.0% | |
| CAGTTGCATTCGCTAGTGGC+AGG | - | chr1.3:59378895-59378914 | None:intergenic | 55.0% | |
| CATGCACATGGTCCGGGAAA+GGG | - | chr1.3:59378737-59378756 | None:intergenic | 55.0% | |
| CCGACAAGAGACAGAGAGCA+AGG | - | chr1.3:59381491-59381510 | None:intergenic | 55.0% | |
| CCGATGATCCTGGTGGTTCA+AGG | + | chr1.3:59378166-59378185 | MS.gene44169:CDS | 55.0% | |
| CGAGATCTCTTTCCCGTACC+AGG | - | chr1.3:59381353-59381372 | None:intergenic | 55.0% | |
| CGGTGGTCCGGTAATCGAAT+TGG | + | chr1.3:59378095-59378114 | MS.gene44169:CDS | 55.0% | |
| CTGTGCAGTAGTGCCCCAAA+AGG | + | chr1.3:59379351-59379370 | MS.gene44169:intron | 55.0% | |
| GATACATCCACCCATGCTGG+AGG | - | chr1.3:59379815-59379834 | None:intergenic | 55.0% | |
| GCCGTCGTTTGGAGATGGTA+AGG | + | chr1.3:59379913-59379932 | MS.gene44169:CDS | 55.0% | |
| GGGTCAAGATGGAGTTGACC+TGG | + | chr1.3:59381576-59381595 | MS.gene44169:intron | 55.0% | |
| GTGGCAACCACAGTTGAGGA+TGG | + | chr1.3:59382255-59382274 | MS.gene44169:CDS | 55.0% | |
| GTTGTCCAAGGCTCATGCGA+AGG | + | chr1.3:59379883-59379902 | MS.gene44169:CDS | 55.0% | |
| TAAGGCCTTCGCATGAGCCT+TGG | - | chr1.3:59379891-59379910 | None:intergenic | 55.0% | |
| ! | CATGCTTCGGTGTGTGGGAA+CGG | - | chr1.3:59379114-59379133 | None:intergenic | 55.0% |
| ! | CCCCTTCACGAGAAGCACAA+AGG | - | chr1.3:59381694-59381713 | None:intergenic | 55.0% |
| ! | TGCGGAGACTTGCTTCTGCA+GGG | + | chr1.3:59380005-59380024 | MS.gene44169:CDS | 55.0% |
| !! | CCGCTTAGTACCGATGATCC+TGG | + | chr1.3:59378156-59378175 | MS.gene44169:CDS | 55.0% |
| CAATCGGTGGGACCCTTTCC+CGG | + | chr1.3:59378722-59378741 | MS.gene44169:intron | 60.0% | |
| CGTTCCCACACACCGAAGCA+TGG | + | chr1.3:59379112-59379131 | MS.gene44169:intron | 60.0% | |
| CTCTCGCATGCACATGGTCC+GGG | - | chr1.3:59378743-59378762 | None:intergenic | 60.0% | |
| CTTCTCGTGAAGGGGGTGGT+GGG | + | chr1.3:59381699-59381718 | MS.gene44169:intron | 60.0% | |
| GCAGATCCTCTCCTTCTGCG+AGG | + | chr1.3:59382136-59382155 | MS.gene44169:intron | 60.0% | |
| GCATGCACATGGTCCGGGAA+AGG | - | chr1.3:59378738-59378757 | None:intergenic | 60.0% | |
| GCGAAGATGACGACGGAGCA+CGG | - | chr1.3:59378056-59378075 | None:intergenic | 60.0% | |
| GCGCCTCAGGCAGCAAAAAG+AGG | + | chr1.3:59381092-59381111 | MS.gene44169:CDS | 60.0% | |
| GCTCTCGCATGCACATGGTC+CGG | - | chr1.3:59378744-59378763 | None:intergenic | 60.0% | |
| GGAGGCAGCCCCACAGTAAT+TGG | - | chr1.3:59379797-59379816 | None:intergenic | 60.0% | |
| TGCTTCTGCAGGGCCTTCTG+AGG | + | chr1.3:59380015-59380034 | MS.gene44169:CDS | 60.0% | |
| TGTGCTTCTCGTGAAGGGGG+TGG | + | chr1.3:59381695-59381714 | MS.gene44169:intron | 60.0% | |
| TTCGCTAGTGGCAGGCCATG+TGG | - | chr1.3:59378887-59378906 | None:intergenic | 60.0% | |
| ! | CTGCGGAGACTTGCTTCTGC+AGG | + | chr1.3:59380004-59380023 | MS.gene44169:CDS | 60.0% |
| !! | GGGTTGCAGAGCTCTGAGAG+AGG | - | chr1.3:59378666-59378685 | None:intergenic | 60.0% |
| CCACCGCGAGAGGAGGTAGA+CGG | - | chr1.3:59378081-59378100 | None:intergenic | 65.0% | |
| GACGGCGGCGAAGATGACGA+CGG | - | chr1.3:59378063-59378082 | None:intergenic | 65.0% | |
| GATTACCGGACCACCGCGAG+AGG | - | chr1.3:59378091-59378110 | None:intergenic | 65.0% | |
| GCTTCTCGTGAAGGGGGTGG+TGG | + | chr1.3:59381698-59381717 | MS.gene44169:intron | 65.0% | |
| TACCTCCTCTCGCGGTGGTC+CGG | + | chr1.3:59378083-59378102 | MS.gene44169:CDS | 65.0% | |
| TGTGGGGCTGCCTCCAGCAT+GGG | + | chr1.3:59379802-59379821 | MS.gene44169:CDS | 65.0% | |
| !! | CAGGAAGTGCTGCCGGAGTG+TGG | - | chr1.3:59379028-59379047 | None:intergenic | 65.0% |
| CCGCCGTCTACCTCCTCTCG+CGG | + | chr1.3:59378075-59378094 | MS.gene44169:CDS | 70.0% | |
| CCGCGAGAGGAGGTAGACGG+CGG | - | chr1.3:59378078-59378097 | None:intergenic | 70.0% | |
| CCGTCTACCTCCTCTCGCGG+TGG | + | chr1.3:59378078-59378097 | MS.gene44169:CDS | 70.0% | |
| CTGTGGGGCTGCCTCCAGCA+TGG | + | chr1.3:59379801-59379820 | MS.gene44169:CDS | 70.0% | |
| TACCGGACCACCGCGAGAGG+AGG | - | chr1.3:59378088-59378107 | None:intergenic | 70.0% | |
| GGGGCTGCCTCCAGCATGGG+TGG | + | chr1.3:59379805-59379824 | MS.gene44169:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 59377994 | 59382501 | 59377994 | ID=MS.gene44169 |
| chr1.3 | mRNA | 59377994 | 59382501 | 59377994 | ID=MS.gene44169.t1;Parent=MS.gene44169 |
| chr1.3 | exon | 59377994 | 59378187 | 59377994 | ID=MS.gene44169.t1.exon1;Parent=MS.gene44169.t1 |
| chr1.3 | CDS | 59377994 | 59378187 | 59377994 | ID=cds.MS.gene44169.t1;Parent=MS.gene44169.t1 |
| chr1.3 | exon | 59379781 | 59380063 | 59379781 | ID=MS.gene44169.t1.exon2;Parent=MS.gene44169.t1 |
| chr1.3 | CDS | 59379781 | 59380063 | 59379781 | ID=cds.MS.gene44169.t1;Parent=MS.gene44169.t1 |
| chr1.3 | exon | 59381024 | 59381113 | 59381024 | ID=MS.gene44169.t1.exon3;Parent=MS.gene44169.t1 |
| chr1.3 | CDS | 59381024 | 59381113 | 59381024 | ID=cds.MS.gene44169.t1;Parent=MS.gene44169.t1 |
| chr1.3 | exon | 59381577 | 59381654 | 59381577 | ID=MS.gene44169.t1.exon4;Parent=MS.gene44169.t1 |
| chr1.3 | CDS | 59381577 | 59381654 | 59381577 | ID=cds.MS.gene44169.t1;Parent=MS.gene44169.t1 |
| chr1.3 | exon | 59381892 | 59381969 | 59381892 | ID=MS.gene44169.t1.exon5;Parent=MS.gene44169.t1 |
| chr1.3 | CDS | 59381892 | 59381969 | 59381892 | ID=cds.MS.gene44169.t1;Parent=MS.gene44169.t1 |
| chr1.3 | exon | 59382066 | 59382131 | 59382066 | ID=MS.gene44169.t1.exon6;Parent=MS.gene44169.t1 |
| chr1.3 | CDS | 59382066 | 59382131 | 59382066 | ID=cds.MS.gene44169.t1;Parent=MS.gene44169.t1 |
| chr1.3 | exon | 59382216 | 59382296 | 59382216 | ID=MS.gene44169.t1.exon7;Parent=MS.gene44169.t1 |
| chr1.3 | CDS | 59382216 | 59382296 | 59382216 | ID=cds.MS.gene44169.t1;Parent=MS.gene44169.t1 |
| chr1.3 | exon | 59382394 | 59382501 | 59382394 | ID=MS.gene44169.t1.exon8;Parent=MS.gene44169.t1 |
| chr1.3 | CDS | 59382394 | 59382501 | 59382394 | ID=cds.MS.gene44169.t1;Parent=MS.gene44169.t1 |
| Gene Sequence |
| Protein sequence |
