Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033077.t1 | XP_013457961.1 | 93 | 300 | 15 | 2 | 1 | 294 | 1 | 300 | 3.30E-141 | 511.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033077.t1 | Q9S7P9 | 61.7 | 303 | 104 | 4 | 1 | 294 | 1 | 300 | 1.7e-90 | 334.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033077.t1 | A0A072UQP3 | 93.0 | 300 | 15 | 2 | 1 | 294 | 1 | 300 | 2.4e-141 | 511.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene32192 | MS.gene033077 | PPI |
| MS.gene033077 | MS.gene01343 | PPI |
| MS.gene033077 | MS.gene82750 | PPI |
| MS.gene033077 | MS.gene035217 | PPI |
| MS.gene033077 | MS.gene01756 | PPI |
| MS.gene033077 | MS.gene50365 | PPI |
| MS.gene033077 | MS.gene002374 | PPI |
| MS.gene033077 | MS.gene047508 | PPI |
| MS.gene033077 | MS.gene99692 | PPI |
| MS.gene033077 | MS.gene065513 | PPI |
| MS.gene038424 | MS.gene033077 | PPI |
| MS.gene033077 | MS.gene027060 | PPI |
| MS.gene033077 | MS.gene01347 | PPI |
| MS.gene033077 | MS.gene052542 | PPI |
| MS.gene033077 | MS.gene53170 | PPI |
| MS.gene033077 | MS.gene22643 | PPI |
| MS.gene033077 | MS.gene062285 | PPI |
| MS.gene033077 | MS.gene22645 | PPI |
| MS.gene033077 | MS.gene90588 | PPI |
| MS.gene33736 | MS.gene033077 | PPI |
| MS.gene033077 | MS.gene017190 | PPI |
| MS.gene033077 | MS.gene55383 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033077.t1 | MTR_4g109310 | 94.667 | 300 | 10 | 2 | 1 | 294 | 1 | 300 | 0.0 | 574 |
| MS.gene033077.t1 | MTR_3g023720 | 65.203 | 296 | 101 | 1 | 1 | 294 | 1 | 296 | 6.37e-133 | 379 |
| MS.gene033077.t1 | MTR_8g021950 | 84.112 | 214 | 34 | 0 | 80 | 293 | 13 | 226 | 1.53e-130 | 370 |
| MS.gene033077.t1 | MTR_3g023720 | 66.667 | 231 | 75 | 1 | 1 | 229 | 1 | 231 | 2.67e-103 | 302 |
| MS.gene033077.t1 | MTR_5g043850 | 60.952 | 210 | 82 | 0 | 85 | 294 | 62 | 271 | 2.67e-88 | 265 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033077.t1 | AT5G61210 | 62.376 | 303 | 102 | 4 | 1 | 294 | 1 | 300 | 6.22e-124 | 356 |
| MS.gene033077.t1 | AT5G61210 | 62.376 | 303 | 102 | 4 | 1 | 294 | 1 | 300 | 6.22e-124 | 356 |
| MS.gene033077.t1 | AT1G13890 | 56.818 | 264 | 89 | 3 | 31 | 294 | 25 | 263 | 1.20e-98 | 290 |
| MS.gene033077.t1 | AT1G13890 | 56.818 | 264 | 89 | 3 | 31 | 294 | 25 | 263 | 1.20e-98 | 290 |
| MS.gene033077.t1 | AT5G07880 | 53.629 | 248 | 106 | 4 | 51 | 294 | 9 | 251 | 3.47e-83 | 251 |
| MS.gene033077.t1 | AT5G07880 | 53.629 | 248 | 106 | 4 | 51 | 294 | 9 | 251 | 3.47e-83 | 251 |
Find 71 sgRNAs with CRISPR-Local
Find 112 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTTTGGTTTCCATGTTT+TGG | 0.164104 | 8.3:-15322990 | None:intergenic |
| AAGAATAATTTCCGTGATTC+TGG | 0.208002 | 8.3:+15322357 | MS.gene033077:CDS |
| GTCAAATTTAAGTGATCTAT+TGG | 0.241177 | 8.3:+15323588 | MS.gene033077:CDS |
| GTCCTGAAACAGTTTGAAAA+AGG | 0.245218 | 8.3:+15323547 | MS.gene033077:intron |
| CAAACAATTGTGAACGGATT+TGG | 0.266871 | 8.3:-15322445 | None:intergenic |
| CTTCCAGGGAGAAAAGCTTT+TGG | 0.287660 | 8.3:+15322946 | MS.gene033077:intron |
| GTTATTGTACGTGTCTTCTT+TGG | 0.296263 | 8.3:-15323004 | None:intergenic |
| AATTATTCTTATACCTGTTC+CGG | 0.301104 | 8.3:-15322344 | None:intergenic |
| TCAGCGTGCTCATCGTCTAA+TGG | 0.331639 | 8.3:+15323864 | MS.gene033077:CDS |
| CGGGTTGGTGTTCACTTCTA+AGG | 0.370097 | 8.3:-15322259 | None:intergenic |
| ATCGATCAGCAGACCGGAAC+AGG | 0.386256 | 8.3:+15322331 | MS.gene033077:CDS |
| CAGCGTGCTCATCGTCTAAT+GGG | 0.392619 | 8.3:+15323865 | MS.gene033077:CDS |
| AAGAAGACACGTACAATAAC+AGG | 0.394267 | 8.3:+15323007 | MS.gene033077:CDS |
| TCAAATTTAAGTGATCTATT+GGG | 0.415335 | 8.3:+15323589 | MS.gene033077:CDS |
| CTGAGGTGGAGTTCGCAGCC+TGG | 0.418844 | 8.3:-15323212 | None:intergenic |
| CTTGGAACAGAGAGAGAAGT+TGG | 0.449507 | 8.3:+15323162 | MS.gene033077:CDS |
| TGATTCTGATGATGAGGAAA+AGG | 0.458014 | 8.3:+15322182 | MS.gene033077:CDS |
| CTGCATCCGAAGGGCAGTCC+AGG | 0.468430 | 8.3:+15323194 | MS.gene033077:CDS |
| TCGCAGCCTGGACTGCCCTT+CGG | 0.470997 | 8.3:-15323200 | None:intergenic |
| TCCTCATCATCAGAATCAAA+CGG | 0.472306 | 8.3:-15322177 | None:intergenic |
| GAATCAATCCGTGCAGGAGT+TGG | 0.484109 | 8.3:+15322389 | MS.gene033077:CDS |
| TTATGCTGTTTACAAGGCTC+AGG | 0.485262 | 8.3:+15322416 | MS.gene033077:CDS |
| AAAAGACATGGCTGTTGACA+TGG | 0.488301 | 8.3:+15323618 | MS.gene033077:CDS |
| TTTGCTCACCCTGGTGATGA+AGG | 0.490885 | 8.3:-15322515 | None:intergenic |
| GTGTCATCAACATCATCAAA+CGG | 0.494369 | 8.3:-15322279 | None:intergenic |
| AGATGATGCGGTCAGAAGAA+AGG | 0.508211 | 8.3:+15323132 | MS.gene033077:intron |
| CAGGATTTAACATCATTGAC+AGG | 0.519852 | 8.3:-15322147 | None:intergenic |
| TGTCATCAACATCATCAAAC+GGG | 0.522938 | 8.3:-15322278 | None:intergenic |
| CTGTCAATGATGTTAAATCC+TGG | 0.525081 | 8.3:+15322148 | MS.gene033077:CDS |
| GGAGAATTATGCTGTTTACA+AGG | 0.528960 | 8.3:+15322410 | MS.gene033077:CDS |
| GAGTTGAATTTCCGAGTGAA+AGG | 0.537349 | 8.3:+15323835 | MS.gene033077:CDS |
| TCCGTTTGATTCTGATGATG+AGG | 0.540959 | 8.3:+15322176 | MS.gene033077:CDS |
| CAGAAGAAAGGGAAACCACT+TGG | 0.541759 | 8.3:+15323144 | MS.gene033077:CDS |
| GCATCTGTTGGTTCCTGAGG+TGG | 0.541871 | 8.3:-15323226 | None:intergenic |
| CAGGCTGCGAACTCCACCTC+AGG | 0.542135 | 8.3:+15323213 | MS.gene033077:CDS |
| GATGATGCGGTCAGAAGAAA+GGG | 0.545481 | 8.3:+15323133 | MS.gene033077:intron |
| CGATGAACATACGTTGATGA+TGG | 0.545998 | 8.3:-15322312 | None:intergenic |
| TTGGAACAGAGAGAGAAGTT+GGG | 0.548541 | 8.3:+15323163 | MS.gene033077:CDS |
| ACATTGATCGAGATTTAAGT+CGG | 0.558173 | 8.3:+15322565 | MS.gene033077:CDS |
| ATTGGTCACCCTTCATCACC+AGG | 0.565796 | 8.3:+15322506 | MS.gene033077:CDS |
| GGATTGACTTCTGCATCCGA+AGG | 0.568407 | 8.3:+15323184 | MS.gene033077:CDS |
| TCTCTACTCCGCCAGAATCA+CGG | 0.572418 | 8.3:-15322368 | None:intergenic |
| CATTGATCGAGATTTAAGTC+GGG | 0.574898 | 8.3:+15322566 | MS.gene033077:CDS |
| ACTTCTCTCTCTGTTCCAAG+TGG | 0.575202 | 8.3:-15323159 | None:intergenic |
| ATGTTCATCGATCAGCAGAC+CGG | 0.577196 | 8.3:+15322325 | MS.gene033077:CDS |
| ACCAGGGTGAGCAAATTACT+AGG | 0.577859 | 8.3:+15322523 | MS.gene033077:CDS |
| AGAATCAAACGGATTCGACC+AGG | 0.580437 | 8.3:-15322166 | None:intergenic |
| TATCTTCAAACAATTGTGAA+CGG | 0.582211 | 8.3:-15322451 | None:intergenic |
| AGTAGAGAATCAATCCGTGC+AGG | 0.582352 | 8.3:+15322383 | MS.gene033077:CDS |
| GCTGATTAGCACCTTTCACT+CGG | 0.583306 | 8.3:-15323846 | None:intergenic |
| AGAGGATGCTGCCAAGACAT+TGG | 0.589813 | 8.3:+15322488 | MS.gene033077:CDS |
| GAGGCCTCTTCTCCAAAACA+TGG | 0.589915 | 8.3:+15322978 | MS.gene033077:CDS |
| TCCTAGTAATTTGCTCACCC+TGG | 0.593660 | 8.3:-15322524 | None:intergenic |
| ATGAAGGGTGACCAATGTCT+TGG | 0.599124 | 8.3:-15322499 | None:intergenic |
| ATCAACATCATCAAACGGGT+TGG | 0.602656 | 8.3:-15322274 | None:intergenic |
| AATAATTTCCGTGATTCTGG+CGG | 0.606685 | 8.3:+15322360 | MS.gene033077:CDS |
| ACATGGGATCAGAAATTGAG+AGG | 0.608886 | 8.3:+15323635 | MS.gene033077:CDS |
| GATCAATGTCAGTGGCGACA+TGG | 0.609207 | 8.3:-15322551 | None:intergenic |
| AGTGCATCTGTTGGTTCCTG+AGG | 0.613449 | 8.3:-15323229 | None:intergenic |
| ATAATTCTCCAACTCCTGCA+CGG | 0.621109 | 8.3:-15322397 | None:intergenic |
| GATAGCAGAGAACATAAGAG+AGG | 0.628193 | 8.3:+15322470 | MS.gene033077:CDS |
| AAAGACATGGCTGTTGACAT+GGG | 0.628546 | 8.3:+15323619 | MS.gene033077:CDS |
| GATTGACTTCTGCATCCGAA+GGG | 0.630700 | 8.3:+15323185 | MS.gene033077:CDS |
| TTGCTCACCCTGGTGATGAA+GGG | 0.636196 | 8.3:-15322514 | None:intergenic |
| ATCATCGTCTAAATGACTCA+AGG | 0.636326 | 8.3:-15323806 | None:intergenic |
| GAGTCATTTAGACGATGATG+TGG | 0.659325 | 8.3:+15323810 | MS.gene033077:CDS |
| ATTGGGAGAGCTAAAAGACA+TGG | 0.663652 | 8.3:+15323606 | MS.gene033077:CDS |
| AGATGCACTTGCAAAAGTCG+AGG | 0.670404 | 8.3:+15323243 | MS.gene033077:CDS |
| TAAATCTCGATCAATGTCAG+TGG | 0.678850 | 8.3:-15322559 | None:intergenic |
| TTCATGTTATGCAGATGATG+CGG | 0.716004 | 8.3:+15323120 | MS.gene033077:intron |
| TTGGTCACCCTTCATCACCA+GGG | 0.732586 | 8.3:+15322507 | MS.gene033077:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATTAGAAAAGAAAACATA+TGG | - | chr8.3:15323065-15323084 | None:intergenic | 15.0% |
| !!! | CTATTTTTTAAAATACTCAT+AGG | - | chr8.3:15322798-15322817 | None:intergenic | 15.0% |
| !! | AGAGTTTGCAATATTATTAA+TGG | - | chr8.3:15323450-15323469 | None:intergenic | 20.0% |
| !! | TCAAATTTAAGTGATCTATT+GGG | + | chr8.3:15323589-15323608 | MS.gene033077:CDS | 20.0% |
| !! | TTAAACAAATAACAAAGTGA+TGG | + | chr8.3:15323690-15323709 | MS.gene033077:intron | 20.0% |
| !!! | ATGGTTCTCATAATTTATTT+TGG | + | chr8.3:15323760-15323779 | MS.gene033077:intron | 20.0% |
| !!! | CAAGATAAATTTTTTCACAA+AGG | - | chr8.3:15322656-15322675 | None:intergenic | 20.0% |
| !!! | GTCAAAATTTAGTCAATTTT+CGG | - | chr8.3:15322912-15322931 | None:intergenic | 20.0% |
| !!! | TTGAAAGTATAGTAGTATAA+TGG | - | chr8.3:15323381-15323400 | None:intergenic | 20.0% |
| ! | AATTATTCTTATACCTGTTC+CGG | - | chr8.3:15322347-15322366 | None:intergenic | 25.0% |
| ! | AGTAACCTACAAAGATTAAA+CGG | - | chr8.3:15323356-15323375 | None:intergenic | 25.0% |
| ! | ATTAACCTCCAAAAATAACA+GGG | - | chr8.3:15323033-15323052 | None:intergenic | 25.0% |
| ! | GTCAAATTTAAGTGATCTAT+TGG | + | chr8.3:15323588-15323607 | MS.gene033077:CDS | 25.0% |
| ! | TAAATCCGTTTAATCTTTGT+AGG | + | chr8.3:15323348-15323367 | MS.gene033077:intron | 25.0% |
| ! | TATCTTCAAACAATTGTGAA+CGG | - | chr8.3:15322454-15322473 | None:intergenic | 25.0% |
| ! | TATTAACCTCCAAAAATAAC+AGG | - | chr8.3:15323034-15323053 | None:intergenic | 25.0% |
| ! | TTAACACTAAATATTGTGCA+AGG | - | chr8.3:15323501-15323520 | None:intergenic | 25.0% |
| !!! | TTTATTTTGGTAAATGTTGC+AGG | + | chr8.3:15323773-15323792 | MS.gene033077:intron | 25.0% |
| AAGAATAATTTCCGTGATTC+TGG | + | chr8.3:15322357-15322376 | MS.gene033077:CDS | 30.0% | |
| ACAAGTAAAGTCTTTCTCAA+AGG | - | chr8.3:15323737-15323756 | None:intergenic | 30.0% | |
| ACATTGATCGAGATTTAAGT+CGG | + | chr8.3:15322565-15322584 | MS.gene033077:CDS | 30.0% | |
| GAAAGACTTTACTTGTTCTA+TGG | + | chr8.3:15323741-15323760 | MS.gene033077:intron | 30.0% | |
| GTCCACAATATCAATTTGAA+CGG | - | chr8.3:15322706-15322725 | None:intergenic | 30.0% | |
| TCCACAATATCAATTTGAAC+GGG | - | chr8.3:15322705-15322724 | None:intergenic | 30.0% | |
| TCCTGAAACAGTTTGAAAAA+GGG | + | chr8.3:15323548-15323567 | MS.gene033077:intron | 30.0% | |
| TTGTGCTGTATCATTATCAT+AGG | + | chr8.3:15323087-15323106 | MS.gene033077:intron | 30.0% | |
| !! | ACATGAAGAAAGCACTATAT+AGG | - | chr8.3:15322626-15322645 | None:intergenic | 30.0% |
| AAGAAGACACGTACAATAAC+AGG | + | chr8.3:15323007-15323026 | MS.gene033077:CDS | 35.0% | |
| AATAATTTCCGTGATTCTGG+CGG | + | chr8.3:15322360-15322379 | MS.gene033077:CDS | 35.0% | |
| ACCCGTTCAAATTGATATTG+TGG | + | chr8.3:15322701-15322720 | MS.gene033077:intron | 35.0% | |
| ATCATCGTCTAAATGACTCA+AGG | - | chr8.3:15323809-15323828 | None:intergenic | 35.0% | |
| CAGGATTTAACATCATTGAC+AGG | - | chr8.3:15322150-15322169 | None:intergenic | 35.0% | |
| CATTGATCGAGATTTAAGTC+GGG | + | chr8.3:15322566-15322585 | MS.gene033077:CDS | 35.0% | |
| CTGTCAATGATGTTAAATCC+TGG | + | chr8.3:15322148-15322167 | MS.gene033077:CDS | 35.0% | |
| GTCCTGAAACAGTTTGAAAA+AGG | + | chr8.3:15323547-15323566 | MS.gene033077:intron | 35.0% | |
| GTGTCATCAACATCATCAAA+CGG | - | chr8.3:15322282-15322301 | None:intergenic | 35.0% | |
| GTTATTGTACGTGTCTTCTT+TGG | - | chr8.3:15323007-15323026 | None:intergenic | 35.0% | |
| TAAATCTCGATCAATGTCAG+TGG | - | chr8.3:15322562-15322581 | None:intergenic | 35.0% | |
| TAACAAAGTGATGGTCGATT+TGG | + | chr8.3:15323699-15323718 | MS.gene033077:intron | 35.0% | |
| TCCTCATCATCAGAATCAAA+CGG | - | chr8.3:15322180-15322199 | None:intergenic | 35.0% | |
| TGTATTATTACCTGCTTCCA+GGG | + | chr8.3:15322932-15322951 | MS.gene033077:intron | 35.0% | |
| TGTCATCAACATCATCAAAC+GGG | - | chr8.3:15322281-15322300 | None:intergenic | 35.0% | |
| TTCATGTTATGCAGATGATG+CGG | + | chr8.3:15323120-15323139 | MS.gene033077:intron | 35.0% | |
| ! | CAAACAATTGTGAACGGATT+TGG | - | chr8.3:15322448-15322467 | None:intergenic | 35.0% |
| ! | GGAGAATTATGCTGTTTACA+AGG | + | chr8.3:15322410-15322429 | MS.gene033077:CDS | 35.0% |
| ! | TCTTTTCTCATAAGTGCTTG+TGG | - | chr8.3:15322753-15322772 | None:intergenic | 35.0% |
| ! | TGATTCTGATGATGAGGAAA+AGG | + | chr8.3:15322182-15322201 | MS.gene033077:CDS | 35.0% |
| !! | CTTCTTTGGTTTCCATGTTT+TGG | - | chr8.3:15322993-15323012 | None:intergenic | 35.0% |
| !!! | ATAACAGGCCCTGTTATTTT+TGG | + | chr8.3:15323022-15323041 | MS.gene033077:CDS | 35.0% |
| !!! | TCCCTTTTTCAAACTGTTTC+AGG | - | chr8.3:15323552-15323571 | None:intergenic | 35.0% |
| AAAAGACATGGCTGTTGACA+TGG | + | chr8.3:15323618-15323637 | MS.gene033077:CDS | 40.0% | |
| AAAGACATGGCTGTTGACAT+GGG | + | chr8.3:15323619-15323638 | MS.gene033077:CDS | 40.0% | |
| ACATGGGATCAGAAATTGAG+AGG | + | chr8.3:15323635-15323654 | MS.gene033077:CDS | 40.0% | |
| ATAATTCTCCAACTCCTGCA+CGG | - | chr8.3:15322400-15322419 | None:intergenic | 40.0% | |
| ATCAACATCATCAAACGGGT+TGG | - | chr8.3:15322277-15322296 | None:intergenic | 40.0% | |
| ATTGGGAGAGCTAAAAGACA+TGG | + | chr8.3:15323606-15323625 | MS.gene033077:CDS | 40.0% | |
| CTGTATTATTACCTGCTTCC+AGG | + | chr8.3:15322931-15322950 | MS.gene033077:intron | 40.0% | |
| GAGTCATTTAGACGATGATG+TGG | + | chr8.3:15323810-15323829 | MS.gene033077:CDS | 40.0% | |
| GAGTTGAATTTCCGAGTGAA+AGG | + | chr8.3:15323835-15323854 | MS.gene033077:CDS | 40.0% | |
| GATAGCAGAGAACATAAGAG+AGG | + | chr8.3:15322470-15322489 | MS.gene033077:CDS | 40.0% | |
| TTGGAACAGAGAGAGAAGTT+GGG | + | chr8.3:15323163-15323182 | MS.gene033077:CDS | 40.0% | |
| ! | AAAGCTTTGTCAAGTTCAGC+AGG | - | chr8.3:15323313-15323332 | None:intergenic | 40.0% |
| ! | ACTTTTGCAAGTGCATCTGT+TGG | - | chr8.3:15323241-15323260 | None:intergenic | 40.0% |
| ! | CGATGAACATACGTTGATGA+TGG | - | chr8.3:15322315-15322334 | None:intergenic | 40.0% |
| ! | TCCGTTTGATTCTGATGATG+AGG | + | chr8.3:15322176-15322195 | MS.gene033077:CDS | 40.0% |
| ! | TTATGCTGTTTACAAGGCTC+AGG | + | chr8.3:15322416-15322435 | MS.gene033077:CDS | 40.0% |
| ! | TTCCAGGGAGAAAAGCTTTT+GGG | + | chr8.3:15322947-15322966 | MS.gene033077:intron | 40.0% |
| !!! | GTTTCCATGTTTTGGAGAAG+AGG | - | chr8.3:15322985-15323004 | None:intergenic | 40.0% |
| ACCAGGGTGAGCAAATTACT+AGG | + | chr8.3:15322523-15322542 | MS.gene033077:CDS | 45.0% | |
| ACTTCTCTCTCTGTTCCAAG+TGG | - | chr8.3:15323162-15323181 | None:intergenic | 45.0% | |
| AGATGATGCGGTCAGAAGAA+AGG | + | chr8.3:15323132-15323151 | MS.gene033077:intron | 45.0% | |
| AGATGCACTTGCAAAAGTCG+AGG | + | chr8.3:15323243-15323262 | MS.gene033077:CDS | 45.0% | |
| AGTAGAGAATCAATCCGTGC+AGG | + | chr8.3:15322383-15322402 | MS.gene033077:CDS | 45.0% | |
| AGTCGAGGTTCGTATCTACT+CGG | + | chr8.3:15323258-15323277 | MS.gene033077:intron | 45.0% | |
| ATGAAGGGTGACCAATGTCT+TGG | - | chr8.3:15322502-15322521 | None:intergenic | 45.0% | |
| ATGTTCATCGATCAGCAGAC+CGG | + | chr8.3:15322325-15322344 | MS.gene033077:CDS | 45.0% | |
| CAGAAGAAAGGGAAACCACT+TGG | + | chr8.3:15323144-15323163 | MS.gene033077:CDS | 45.0% | |
| CTTGGAACAGAGAGAGAAGT+TGG | + | chr8.3:15323162-15323181 | MS.gene033077:CDS | 45.0% | |
| GATGATGCGGTCAGAAGAAA+GGG | + | chr8.3:15323133-15323152 | MS.gene033077:intron | 45.0% | |
| GCTGATTAGCACCTTTCACT+CGG | - | chr8.3:15323849-15323868 | None:intergenic | 45.0% | |
| ! | AGAATCAAACGGATTCGACC+AGG | - | chr8.3:15322169-15322188 | None:intergenic | 45.0% |
| ! | AGTCAATTTTCGGCACAGCT+TGG | - | chr8.3:15322902-15322921 | None:intergenic | 45.0% |
| ! | CTTCCAGGGAGAAAAGCTTT+TGG | + | chr8.3:15322946-15322965 | MS.gene033077:intron | 45.0% |
| ! | GATTGACTTCTGCATCCGAA+GGG | + | chr8.3:15323185-15323204 | MS.gene033077:CDS | 45.0% |
| ! | GTCAATTTTCGGCACAGCTT+GGG | - | chr8.3:15322901-15322920 | None:intergenic | 45.0% |
| ! | TTCCCAAAAGCTTTTCTCCC+TGG | - | chr8.3:15322952-15322971 | None:intergenic | 45.0% |
| !! | GAAAAGCTTTTGGGAAGCCT+TGG | + | chr8.3:15322956-15322975 | MS.gene033077:CDS | 45.0% |
| !! | TCCTAGTAATTTGCTCACCC+TGG | - | chr8.3:15322527-15322546 | None:intergenic | 45.0% |
| !!! | ACAGGCCCTGTTATTTTTGG+AGG | + | chr8.3:15323025-15323044 | MS.gene033077:CDS | 45.0% |
| AGAGGATGCTGCCAAGACAT+TGG | + | chr8.3:15322488-15322507 | MS.gene033077:CDS | 50.0% | |
| ATTGGTCACCCTTCATCACC+AGG | + | chr8.3:15322506-15322525 | MS.gene033077:CDS | 50.0% | |
| CAGCGTGCTCATCGTCTAAT+GGG | + | chr8.3:15323865-15323884 | MS.gene033077:CDS | 50.0% | |
| GAATCAATCCGTGCAGGAGT+TGG | + | chr8.3:15322389-15322408 | MS.gene033077:CDS | 50.0% | |
| GAGGCCTCTTCTCCAAAACA+TGG | + | chr8.3:15322978-15322997 | MS.gene033077:CDS | 50.0% | |
| GATCAATGTCAGTGGCGACA+TGG | - | chr8.3:15322554-15322573 | None:intergenic | 50.0% | |
| TCAGCGTGCTCATCGTCTAA+TGG | + | chr8.3:15323864-15323883 | MS.gene033077:CDS | 50.0% | |
| TCTCTACTCCGCCAGAATCA+CGG | - | chr8.3:15322371-15322390 | None:intergenic | 50.0% | |
| TTGGTCACCCTTCATCACCA+GGG | + | chr8.3:15322507-15322526 | MS.gene033077:CDS | 50.0% | |
| ! | AAGCTTTTCTCCCTGGAAGC+AGG | - | chr8.3:15322945-15322964 | None:intergenic | 50.0% |
| ! | GGATTGACTTCTGCATCCGA+AGG | + | chr8.3:15323184-15323203 | MS.gene033077:CDS | 50.0% |
| ! | TTGCTCACCCTGGTGATGAA+GGG | - | chr8.3:15322517-15322536 | None:intergenic | 50.0% |
| ! | TTTGCTCACCCTGGTGATGA+AGG | - | chr8.3:15322518-15322537 | None:intergenic | 50.0% |
| !! | AAGCTTTTGGGAAGCCTTGG+AGG | + | chr8.3:15322959-15322978 | MS.gene033077:CDS | 50.0% |
| !! | AGTGCATCTGTTGGTTCCTG+AGG | - | chr8.3:15323232-15323251 | None:intergenic | 50.0% |
| !! | CGGGTTGGTGTTCACTTCTA+AGG | - | chr8.3:15322262-15322281 | None:intergenic | 50.0% |
| !! | TTTTGGAGAAGAGGCCTCCA+AGG | - | chr8.3:15322976-15322995 | None:intergenic | 50.0% |
| ATCGATCAGCAGACCGGAAC+AGG | + | chr8.3:15322331-15322350 | MS.gene033077:CDS | 55.0% | |
| !! | GCATCTGTTGGTTCCTGAGG+TGG | - | chr8.3:15323229-15323248 | None:intergenic | 55.0% |
| CAGGCTGCGAACTCCACCTC+AGG | + | chr8.3:15323213-15323232 | MS.gene033077:CDS | 65.0% | |
| CTGAGGTGGAGTTCGCAGCC+TGG | - | chr8.3:15323215-15323234 | None:intergenic | 65.0% | |
| CTGCATCCGAAGGGCAGTCC+AGG | + | chr8.3:15323194-15323213 | MS.gene033077:CDS | 65.0% | |
| TCGCAGCCTGGACTGCCCTT+CGG | - | chr8.3:15323203-15323222 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 15322126 | 15323894 | 15322126 | ID=MS.gene033077 |
| chr8.3 | mRNA | 15322126 | 15323894 | 15322126 | ID=MS.gene033077.t1;Parent=MS.gene033077 |
| chr8.3 | exon | 15322126 | 15322587 | 15322126 | ID=MS.gene033077.t1.exon1;Parent=MS.gene033077.t1 |
| chr8.3 | CDS | 15322126 | 15322587 | 15322126 | ID=cds.MS.gene033077.t1;Parent=MS.gene033077.t1 |
| chr8.3 | exon | 15322953 | 15323046 | 15322953 | ID=MS.gene033077.t1.exon2;Parent=MS.gene033077.t1 |
| chr8.3 | CDS | 15322953 | 15323046 | 15322953 | ID=cds.MS.gene033077.t1;Parent=MS.gene033077.t1 |
| chr8.3 | exon | 15323134 | 15323264 | 15323134 | ID=MS.gene033077.t1.exon3;Parent=MS.gene033077.t1 |
| chr8.3 | CDS | 15323134 | 15323264 | 15323134 | ID=cds.MS.gene033077.t1;Parent=MS.gene033077.t1 |
| chr8.3 | exon | 15323559 | 15323656 | 15323559 | ID=MS.gene033077.t1.exon4;Parent=MS.gene033077.t1 |
| chr8.3 | CDS | 15323559 | 15323656 | 15323559 | ID=cds.MS.gene033077.t1;Parent=MS.gene033077.t1 |
| chr8.3 | exon | 15323795 | 15323894 | 15323795 | ID=MS.gene033077.t1.exon5;Parent=MS.gene033077.t1 |
| chr8.3 | CDS | 15323795 | 15323894 | 15323795 | ID=cds.MS.gene033077.t1;Parent=MS.gene033077.t1 |
| Gene Sequence |
| Protein sequence |
