Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044431.t1 | XP_013457961.1 | 93.3 | 300 | 14 | 2 | 1 | 294 | 1 | 300 | 8.70E-142 | 513.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044431.t1 | Q9S7P9 | 62.0 | 303 | 103 | 4 | 1 | 294 | 1 | 300 | 6.0e-91 | 335.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044431.t1 | A0A072UQP3 | 93.3 | 300 | 14 | 2 | 1 | 294 | 1 | 300 | 6.3e-142 | 513.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene044431 | MS.gene22645 | PPI |
| MS.gene044431 | MS.gene062285 | PPI |
| MS.gene044431 | MS.gene017190 | PPI |
| MS.gene047508 | MS.gene044431 | PPI |
| MS.gene33736 | MS.gene044431 | PPI |
| MS.gene044431 | MS.gene55383 | PPI |
| MS.gene01343 | MS.gene044431 | PPI |
| MS.gene044431 | MS.gene99692 | PPI |
| MS.gene32192 | MS.gene044431 | PPI |
| MS.gene044431 | MS.gene82750 | PPI |
| MS.gene044431 | MS.gene065513 | PPI |
| MS.gene044431 | MS.gene50365 | PPI |
| MS.gene044431 | MS.gene027060 | PPI |
| MS.gene038424 | MS.gene044431 | PPI |
| MS.gene002374 | MS.gene044431 | PPI |
| MS.gene044431 | MS.gene01347 | PPI |
| MS.gene22643 | MS.gene044431 | PPI |
| MS.gene044431 | MS.gene53170 | PPI |
| MS.gene01756 | MS.gene044431 | PPI |
| MS.gene052542 | MS.gene044431 | PPI |
| MS.gene90588 | MS.gene044431 | PPI |
| MS.gene035217 | MS.gene044431 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044431.t1 | MTR_4g109310 | 95.000 | 300 | 9 | 2 | 1 | 294 | 1 | 300 | 0.0 | 577 |
| MS.gene044431.t1 | MTR_3g023720 | 65.203 | 296 | 101 | 1 | 1 | 294 | 1 | 296 | 4.39e-133 | 379 |
| MS.gene044431.t1 | MTR_8g021950 | 84.112 | 214 | 34 | 0 | 80 | 293 | 13 | 226 | 1.99e-130 | 370 |
| MS.gene044431.t1 | MTR_3g023720 | 66.667 | 231 | 75 | 1 | 1 | 229 | 1 | 231 | 3.25e-103 | 302 |
| MS.gene044431.t1 | MTR_5g043850 | 61.429 | 210 | 81 | 0 | 85 | 294 | 62 | 271 | 3.84e-89 | 266 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044431.t1 | AT5G61210 | 62.706 | 303 | 101 | 4 | 1 | 294 | 1 | 300 | 7.30e-125 | 358 |
| MS.gene044431.t1 | AT5G61210 | 62.706 | 303 | 101 | 4 | 1 | 294 | 1 | 300 | 7.30e-125 | 358 |
| MS.gene044431.t1 | AT1G13890 | 57.197 | 264 | 88 | 3 | 31 | 294 | 25 | 263 | 1.50e-99 | 293 |
| MS.gene044431.t1 | AT1G13890 | 57.197 | 264 | 88 | 3 | 31 | 294 | 25 | 263 | 1.50e-99 | 293 |
| MS.gene044431.t1 | AT5G07880 | 54.032 | 248 | 105 | 4 | 51 | 294 | 9 | 251 | 5.63e-84 | 253 |
| MS.gene044431.t1 | AT5G07880 | 54.032 | 248 | 105 | 4 | 51 | 294 | 9 | 251 | 5.63e-84 | 253 |
Find 71 sgRNAs with CRISPR-Local
Find 112 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTTTGGTTTCCATGTTT+TGG | 0.164104 | 8.1:-16284486 | None:intergenic |
| AAGAATAATTTCCGTGATTC+TGG | 0.208002 | 8.1:+16283853 | MS.gene044431:CDS |
| GTCAAATTTAAGTGATCTAT+TGG | 0.241177 | 8.1:+16285084 | MS.gene044431:CDS |
| GTCCTGAAACAGTTTGAAAA+AGG | 0.245218 | 8.1:+16285043 | MS.gene044431:intron |
| CAAACAATTGTGAACGGATT+TGG | 0.266871 | 8.1:-16283941 | None:intergenic |
| TCAGCGTGCTCGTCGTCTAA+TGG | 0.284873 | 8.1:+16285360 | MS.gene044431:CDS |
| CTTCCAGGGAGAAAAGCTTT+TGG | 0.287660 | 8.1:+16284442 | MS.gene044431:intron |
| GTTATTGTACGTGTCTTCTT+TGG | 0.296263 | 8.1:-16284500 | None:intergenic |
| AATTATTCTTATACCTGTTC+CGG | 0.301104 | 8.1:-16283840 | None:intergenic |
| CAGCGTGCTCGTCGTCTAAT+GGG | 0.360616 | 8.1:+16285361 | MS.gene044431:CDS |
| CGGGTTGGTGTTCACTTCTA+AGG | 0.370097 | 8.1:-16283755 | None:intergenic |
| ATCGATCAGCAGACCGGAAC+AGG | 0.386256 | 8.1:+16283827 | MS.gene044431:CDS |
| AAGAAGACACGTACAATAAC+AGG | 0.394267 | 8.1:+16284503 | MS.gene044431:CDS |
| TCAAATTTAAGTGATCTATT+GGG | 0.415335 | 8.1:+16285085 | MS.gene044431:CDS |
| CTGAGGTGGAGTTCGCAGCC+TGG | 0.418844 | 8.1:-16284708 | None:intergenic |
| CTTGGAACAGAGAGAGAAGT+TGG | 0.449507 | 8.1:+16284658 | MS.gene044431:CDS |
| TGATTCTGATGATGAGGAAA+AGG | 0.458014 | 8.1:+16283678 | MS.gene044431:CDS |
| CTGCATCCGAAGGGCAGTCC+AGG | 0.468430 | 8.1:+16284690 | MS.gene044431:CDS |
| TCGCAGCCTGGACTGCCCTT+CGG | 0.470997 | 8.1:-16284696 | None:intergenic |
| TCCTCATCATCAGAATCAAA+CGG | 0.472306 | 8.1:-16283673 | None:intergenic |
| GAATCAATCCGTGCAGGAGT+TGG | 0.484109 | 8.1:+16283885 | MS.gene044431:CDS |
| TTATGCTGTTTACAAGGCTC+AGG | 0.485262 | 8.1:+16283912 | MS.gene044431:CDS |
| AAAAGACATGGCTGTTGACA+TGG | 0.488301 | 8.1:+16285114 | MS.gene044431:CDS |
| TTTGCTCACCCTGGTGATGA+AGG | 0.490885 | 8.1:-16284011 | None:intergenic |
| GTGTCATCAACATCATCAAA+CGG | 0.494369 | 8.1:-16283775 | None:intergenic |
| AGATGATGCGGTCAGAAGAA+AGG | 0.512949 | 8.1:+16284628 | MS.gene044431:intron |
| CAGGATTTAACATCATTGAC+AGG | 0.519852 | 8.1:-16283643 | None:intergenic |
| TGTCATCAACATCATCAAAC+GGG | 0.522938 | 8.1:-16283774 | None:intergenic |
| CTGTCAATGATGTTAAATCC+TGG | 0.525081 | 8.1:+16283644 | MS.gene044431:CDS |
| GGAGAATTATGCTGTTTACA+AGG | 0.528960 | 8.1:+16283906 | MS.gene044431:CDS |
| GAGTTGAATTTCCGAGTGAA+AGG | 0.537349 | 8.1:+16285331 | MS.gene044431:CDS |
| TCCGTTTGATTCTGATGATG+AGG | 0.540959 | 8.1:+16283672 | MS.gene044431:CDS |
| CAGAAGAAAGGGAAACCACT+TGG | 0.541759 | 8.1:+16284640 | MS.gene044431:CDS |
| GCATCTGTTGGTTCCTGAGG+TGG | 0.541871 | 8.1:-16284722 | None:intergenic |
| CAGGCTGCGAACTCCACCTC+AGG | 0.542135 | 8.1:+16284709 | MS.gene044431:CDS |
| CGATGAACATACGTTGATGA+TGG | 0.545998 | 8.1:-16283808 | None:intergenic |
| TTGGAACAGAGAGAGAAGTT+GGG | 0.548541 | 8.1:+16284659 | MS.gene044431:CDS |
| GATGATGCGGTCAGAAGAAA+GGG | 0.550218 | 8.1:+16284629 | MS.gene044431:intron |
| ACATTGATCGAGATTTAAGT+CGG | 0.558173 | 8.1:+16284061 | MS.gene044431:CDS |
| ATTGGTCACCCTTCATCACC+AGG | 0.565796 | 8.1:+16284002 | MS.gene044431:CDS |
| GGATTGACTTCTGCATCCGA+AGG | 0.568407 | 8.1:+16284680 | MS.gene044431:CDS |
| TCTCTACTCCGCCAGAATCA+CGG | 0.572418 | 8.1:-16283864 | None:intergenic |
| CATTGATCGAGATTTAAGTC+GGG | 0.574898 | 8.1:+16284062 | MS.gene044431:CDS |
| ACTTCTCTCTCTGTTCCAAG+TGG | 0.575202 | 8.1:-16284655 | None:intergenic |
| ATGTTCATCGATCAGCAGAC+CGG | 0.577196 | 8.1:+16283821 | MS.gene044431:CDS |
| ACCAGGGTGAGCAAATTACT+AGG | 0.577859 | 8.1:+16284019 | MS.gene044431:CDS |
| AGAATCAAACGGATTCGACC+AGG | 0.580437 | 8.1:-16283662 | None:intergenic |
| TATCTTCAAACAATTGTGAA+CGG | 0.582211 | 8.1:-16283947 | None:intergenic |
| AGTAGAGAATCAATCCGTGC+AGG | 0.582352 | 8.1:+16283879 | MS.gene044431:CDS |
| GCTGATTAGCACCTTTCACT+CGG | 0.583306 | 8.1:-16285342 | None:intergenic |
| AGAGGATGCTGCCAAGACAT+TGG | 0.589813 | 8.1:+16283984 | MS.gene044431:CDS |
| GAGGCCTCTTCTCCAAAACA+TGG | 0.589915 | 8.1:+16284474 | MS.gene044431:CDS |
| TCCTAGTAATTTGCTCACCC+TGG | 0.593660 | 8.1:-16284020 | None:intergenic |
| ATGAAGGGTGACCAATGTCT+TGG | 0.599124 | 8.1:-16283995 | None:intergenic |
| ATCAACATCATCAAACGGGT+TGG | 0.602656 | 8.1:-16283770 | None:intergenic |
| AATAATTTCCGTGATTCTGG+CGG | 0.606685 | 8.1:+16283856 | MS.gene044431:CDS |
| ACATGGGATCAGAAATTGAG+AGG | 0.608886 | 8.1:+16285131 | MS.gene044431:CDS |
| GATCAATGTCAGTGGCGACA+TGG | 0.609207 | 8.1:-16284047 | None:intergenic |
| AGTGCATCTGTTGGTTCCTG+AGG | 0.613449 | 8.1:-16284725 | None:intergenic |
| ATAATTCTCCAACTCCTGCA+CGG | 0.621109 | 8.1:-16283893 | None:intergenic |
| GATAGCAGAGAACATAAGAG+AGG | 0.628193 | 8.1:+16283966 | MS.gene044431:CDS |
| AAAGACATGGCTGTTGACAT+GGG | 0.628546 | 8.1:+16285115 | MS.gene044431:CDS |
| GATTGACTTCTGCATCCGAA+GGG | 0.630700 | 8.1:+16284681 | MS.gene044431:CDS |
| TTGCTCACCCTGGTGATGAA+GGG | 0.636196 | 8.1:-16284010 | None:intergenic |
| ATCATCGTCTAAATGACTCA+AGG | 0.636326 | 8.1:-16285302 | None:intergenic |
| GAGTCATTTAGACGATGATG+TGG | 0.659325 | 8.1:+16285306 | MS.gene044431:CDS |
| ATTGGGAGAGCTAAAAGACA+TGG | 0.663652 | 8.1:+16285102 | MS.gene044431:CDS |
| AGATGCACTTGCAAAAGTCG+AGG | 0.670404 | 8.1:+16284739 | MS.gene044431:CDS |
| TAAATCTCGATCAATGTCAG+TGG | 0.678850 | 8.1:-16284055 | None:intergenic |
| TTCATGTTATGTAGATGATG+CGG | 0.714011 | 8.1:+16284616 | MS.gene044431:intron |
| TTGGTCACCCTTCATCACCA+GGG | 0.732586 | 8.1:+16284003 | MS.gene044431:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATTAGAAAAGAAAACATA+TGG | - | chr8.1:16284561-16284580 | None:intergenic | 15.0% |
| !!! | CTATTTTTTAAAATACTCAT+AGG | - | chr8.1:16284294-16284313 | None:intergenic | 15.0% |
| !! | AGAGTTTGCAATATTATTAA+TGG | - | chr8.1:16284946-16284965 | None:intergenic | 20.0% |
| !! | TCAAATTTAAGTGATCTATT+GGG | + | chr8.1:16285085-16285104 | MS.gene044431:CDS | 20.0% |
| !! | TTAAACAAATAACAAAGTGA+TGG | + | chr8.1:16285186-16285205 | MS.gene044431:intron | 20.0% |
| !!! | ATGGTTCTCATAATTTATTT+TGG | + | chr8.1:16285256-16285275 | MS.gene044431:intron | 20.0% |
| !!! | CAAGATAAATTTTTTCACAA+AGG | - | chr8.1:16284152-16284171 | None:intergenic | 20.0% |
| !!! | GTCAAAATTTAGTCAATTTT+CGG | - | chr8.1:16284408-16284427 | None:intergenic | 20.0% |
| !!! | TTGAAAGTATAGTAGTATAA+TGG | - | chr8.1:16284877-16284896 | None:intergenic | 20.0% |
| ! | AATTATTCTTATACCTGTTC+CGG | - | chr8.1:16283843-16283862 | None:intergenic | 25.0% |
| ! | AGTAACCAACAAAGATTAAA+CGG | - | chr8.1:16284852-16284871 | None:intergenic | 25.0% |
| ! | ATTAACCTCCAAAAATAACA+GGG | - | chr8.1:16284529-16284548 | None:intergenic | 25.0% |
| ! | GTCAAATTTAAGTGATCTAT+TGG | + | chr8.1:16285084-16285103 | MS.gene044431:CDS | 25.0% |
| ! | TAAATCCGTTTAATCTTTGT+TGG | + | chr8.1:16284844-16284863 | MS.gene044431:intron | 25.0% |
| ! | TATCTTCAAACAATTGTGAA+CGG | - | chr8.1:16283950-16283969 | None:intergenic | 25.0% |
| ! | TATTAACCTCCAAAAATAAC+AGG | - | chr8.1:16284530-16284549 | None:intergenic | 25.0% |
| ! | TTAACACTAAATATTGTGCA+AGG | - | chr8.1:16284997-16285016 | None:intergenic | 25.0% |
| !!! | TTTATTTTGGTAAATGTTGC+AGG | + | chr8.1:16285269-16285288 | MS.gene044431:intron | 25.0% |
| AAGAATAATTTCCGTGATTC+TGG | + | chr8.1:16283853-16283872 | MS.gene044431:CDS | 30.0% | |
| ACAAGTAAAGTCTTTCTCAA+AGG | - | chr8.1:16285233-16285252 | None:intergenic | 30.0% | |
| ACATTGATCGAGATTTAAGT+CGG | + | chr8.1:16284061-16284080 | MS.gene044431:CDS | 30.0% | |
| GAAAGACTTTACTTGTTCTA+TGG | + | chr8.1:16285237-16285256 | MS.gene044431:intron | 30.0% | |
| GTCCACAATATCAATTTGAA+CGG | - | chr8.1:16284202-16284221 | None:intergenic | 30.0% | |
| TCCACAATATCAATTTGAAC+GGG | - | chr8.1:16284201-16284220 | None:intergenic | 30.0% | |
| TCCTGAAACAGTTTGAAAAA+GGG | + | chr8.1:16285044-16285063 | MS.gene044431:intron | 30.0% | |
| TTCATGTTATGTAGATGATG+CGG | + | chr8.1:16284616-16284635 | MS.gene044431:intron | 30.0% | |
| TTGTGCTGTATCATTATCAT+AGG | + | chr8.1:16284583-16284602 | MS.gene044431:intron | 30.0% | |
| !! | ACATGAAGAAAGCACTATAT+AGG | - | chr8.1:16284122-16284141 | None:intergenic | 30.0% |
| AAGAAGACACGTACAATAAC+AGG | + | chr8.1:16284503-16284522 | MS.gene044431:CDS | 35.0% | |
| AATAATTTCCGTGATTCTGG+CGG | + | chr8.1:16283856-16283875 | MS.gene044431:CDS | 35.0% | |
| ACCCGTTCAAATTGATATTG+TGG | + | chr8.1:16284197-16284216 | MS.gene044431:intron | 35.0% | |
| ATCATCGTCTAAATGACTCA+AGG | - | chr8.1:16285305-16285324 | None:intergenic | 35.0% | |
| CAGGATTTAACATCATTGAC+AGG | - | chr8.1:16283646-16283665 | None:intergenic | 35.0% | |
| CATTGATCGAGATTTAAGTC+GGG | + | chr8.1:16284062-16284081 | MS.gene044431:CDS | 35.0% | |
| CTGTCAATGATGTTAAATCC+TGG | + | chr8.1:16283644-16283663 | MS.gene044431:CDS | 35.0% | |
| GTCCTGAAACAGTTTGAAAA+AGG | + | chr8.1:16285043-16285062 | MS.gene044431:intron | 35.0% | |
| GTGTCATCAACATCATCAAA+CGG | - | chr8.1:16283778-16283797 | None:intergenic | 35.0% | |
| GTTATTGTACGTGTCTTCTT+TGG | - | chr8.1:16284503-16284522 | None:intergenic | 35.0% | |
| TAAATCTCGATCAATGTCAG+TGG | - | chr8.1:16284058-16284077 | None:intergenic | 35.0% | |
| TAACAAAGTGATGGTCGATT+TGG | + | chr8.1:16285195-16285214 | MS.gene044431:intron | 35.0% | |
| TCCTCATCATCAGAATCAAA+CGG | - | chr8.1:16283676-16283695 | None:intergenic | 35.0% | |
| TGTATTATTACCTGCTTCCA+GGG | + | chr8.1:16284428-16284447 | MS.gene044431:intron | 35.0% | |
| TGTCATCAACATCATCAAAC+GGG | - | chr8.1:16283777-16283796 | None:intergenic | 35.0% | |
| ! | CAAACAATTGTGAACGGATT+TGG | - | chr8.1:16283944-16283963 | None:intergenic | 35.0% |
| ! | GGAGAATTATGCTGTTTACA+AGG | + | chr8.1:16283906-16283925 | MS.gene044431:CDS | 35.0% |
| ! | TCTTTTCTCATAAGTGCTTG+TGG | - | chr8.1:16284249-16284268 | None:intergenic | 35.0% |
| ! | TGATTCTGATGATGAGGAAA+AGG | + | chr8.1:16283678-16283697 | MS.gene044431:CDS | 35.0% |
| !! | CTTCTTTGGTTTCCATGTTT+TGG | - | chr8.1:16284489-16284508 | None:intergenic | 35.0% |
| !!! | ATAACAGGCCCTGTTATTTT+TGG | + | chr8.1:16284518-16284537 | MS.gene044431:CDS | 35.0% |
| !!! | TCCCTTTTTCAAACTGTTTC+AGG | - | chr8.1:16285048-16285067 | None:intergenic | 35.0% |
| AAAAGACATGGCTGTTGACA+TGG | + | chr8.1:16285114-16285133 | MS.gene044431:CDS | 40.0% | |
| AAAGACATGGCTGTTGACAT+GGG | + | chr8.1:16285115-16285134 | MS.gene044431:CDS | 40.0% | |
| ACATGGGATCAGAAATTGAG+AGG | + | chr8.1:16285131-16285150 | MS.gene044431:CDS | 40.0% | |
| ATAATTCTCCAACTCCTGCA+CGG | - | chr8.1:16283896-16283915 | None:intergenic | 40.0% | |
| ATCAACATCATCAAACGGGT+TGG | - | chr8.1:16283773-16283792 | None:intergenic | 40.0% | |
| ATTGGGAGAGCTAAAAGACA+TGG | + | chr8.1:16285102-16285121 | MS.gene044431:CDS | 40.0% | |
| CTGTATTATTACCTGCTTCC+AGG | + | chr8.1:16284427-16284446 | MS.gene044431:intron | 40.0% | |
| GAGTCATTTAGACGATGATG+TGG | + | chr8.1:16285306-16285325 | MS.gene044431:CDS | 40.0% | |
| GAGTTGAATTTCCGAGTGAA+AGG | + | chr8.1:16285331-16285350 | MS.gene044431:CDS | 40.0% | |
| GATAGCAGAGAACATAAGAG+AGG | + | chr8.1:16283966-16283985 | MS.gene044431:CDS | 40.0% | |
| TTGGAACAGAGAGAGAAGTT+GGG | + | chr8.1:16284659-16284678 | MS.gene044431:CDS | 40.0% | |
| ! | AAAGCTTTGTCAAGTTCAGC+AGG | - | chr8.1:16284809-16284828 | None:intergenic | 40.0% |
| ! | ACTTTTGCAAGTGCATCTGT+TGG | - | chr8.1:16284737-16284756 | None:intergenic | 40.0% |
| ! | CGATGAACATACGTTGATGA+TGG | - | chr8.1:16283811-16283830 | None:intergenic | 40.0% |
| ! | TCCGTTTGATTCTGATGATG+AGG | + | chr8.1:16283672-16283691 | MS.gene044431:CDS | 40.0% |
| ! | TTATGCTGTTTACAAGGCTC+AGG | + | chr8.1:16283912-16283931 | MS.gene044431:CDS | 40.0% |
| ! | TTCCAGGGAGAAAAGCTTTT+GGG | + | chr8.1:16284443-16284462 | MS.gene044431:intron | 40.0% |
| !!! | GTTTCCATGTTTTGGAGAAG+AGG | - | chr8.1:16284481-16284500 | None:intergenic | 40.0% |
| ACCAGGGTGAGCAAATTACT+AGG | + | chr8.1:16284019-16284038 | MS.gene044431:CDS | 45.0% | |
| ACTTCTCTCTCTGTTCCAAG+TGG | - | chr8.1:16284658-16284677 | None:intergenic | 45.0% | |
| AGATGATGCGGTCAGAAGAA+AGG | + | chr8.1:16284628-16284647 | MS.gene044431:intron | 45.0% | |
| AGATGCACTTGCAAAAGTCG+AGG | + | chr8.1:16284739-16284758 | MS.gene044431:CDS | 45.0% | |
| AGTAGAGAATCAATCCGTGC+AGG | + | chr8.1:16283879-16283898 | MS.gene044431:CDS | 45.0% | |
| AGTCGAGGTTCGTATCTACT+CGG | + | chr8.1:16284754-16284773 | MS.gene044431:intron | 45.0% | |
| ATGAAGGGTGACCAATGTCT+TGG | - | chr8.1:16283998-16284017 | None:intergenic | 45.0% | |
| ATGTTCATCGATCAGCAGAC+CGG | + | chr8.1:16283821-16283840 | MS.gene044431:CDS | 45.0% | |
| CAGAAGAAAGGGAAACCACT+TGG | + | chr8.1:16284640-16284659 | MS.gene044431:CDS | 45.0% | |
| CTTGGAACAGAGAGAGAAGT+TGG | + | chr8.1:16284658-16284677 | MS.gene044431:CDS | 45.0% | |
| GATGATGCGGTCAGAAGAAA+GGG | + | chr8.1:16284629-16284648 | MS.gene044431:intron | 45.0% | |
| GCTGATTAGCACCTTTCACT+CGG | - | chr8.1:16285345-16285364 | None:intergenic | 45.0% | |
| ! | AGAATCAAACGGATTCGACC+AGG | - | chr8.1:16283665-16283684 | None:intergenic | 45.0% |
| ! | AGTCAATTTTCGGCACAGCT+TGG | - | chr8.1:16284398-16284417 | None:intergenic | 45.0% |
| ! | CTTCCAGGGAGAAAAGCTTT+TGG | + | chr8.1:16284442-16284461 | MS.gene044431:intron | 45.0% |
| ! | GATTGACTTCTGCATCCGAA+GGG | + | chr8.1:16284681-16284700 | MS.gene044431:CDS | 45.0% |
| ! | GTCAATTTTCGGCACAGCTT+GGG | - | chr8.1:16284397-16284416 | None:intergenic | 45.0% |
| ! | TTCCCAAAAGCTTTTCTCCC+TGG | - | chr8.1:16284448-16284467 | None:intergenic | 45.0% |
| !! | GAAAAGCTTTTGGGAAGCCT+TGG | + | chr8.1:16284452-16284471 | MS.gene044431:CDS | 45.0% |
| !! | TCCTAGTAATTTGCTCACCC+TGG | - | chr8.1:16284023-16284042 | None:intergenic | 45.0% |
| !!! | ACAGGCCCTGTTATTTTTGG+AGG | + | chr8.1:16284521-16284540 | MS.gene044431:CDS | 45.0% |
| AGAGGATGCTGCCAAGACAT+TGG | + | chr8.1:16283984-16284003 | MS.gene044431:CDS | 50.0% | |
| ATTGGTCACCCTTCATCACC+AGG | + | chr8.1:16284002-16284021 | MS.gene044431:CDS | 50.0% | |
| GAATCAATCCGTGCAGGAGT+TGG | + | chr8.1:16283885-16283904 | MS.gene044431:CDS | 50.0% | |
| GAGGCCTCTTCTCCAAAACA+TGG | + | chr8.1:16284474-16284493 | MS.gene044431:CDS | 50.0% | |
| GATCAATGTCAGTGGCGACA+TGG | - | chr8.1:16284050-16284069 | None:intergenic | 50.0% | |
| TCTCTACTCCGCCAGAATCA+CGG | - | chr8.1:16283867-16283886 | None:intergenic | 50.0% | |
| TTGGTCACCCTTCATCACCA+GGG | + | chr8.1:16284003-16284022 | MS.gene044431:CDS | 50.0% | |
| ! | AAGCTTTTCTCCCTGGAAGC+AGG | - | chr8.1:16284441-16284460 | None:intergenic | 50.0% |
| ! | GGATTGACTTCTGCATCCGA+AGG | + | chr8.1:16284680-16284699 | MS.gene044431:CDS | 50.0% |
| ! | TTGCTCACCCTGGTGATGAA+GGG | - | chr8.1:16284013-16284032 | None:intergenic | 50.0% |
| ! | TTTGCTCACCCTGGTGATGA+AGG | - | chr8.1:16284014-16284033 | None:intergenic | 50.0% |
| !! | AAGCTTTTGGGAAGCCTTGG+AGG | + | chr8.1:16284455-16284474 | MS.gene044431:CDS | 50.0% |
| !! | AGTGCATCTGTTGGTTCCTG+AGG | - | chr8.1:16284728-16284747 | None:intergenic | 50.0% |
| !! | CGGGTTGGTGTTCACTTCTA+AGG | - | chr8.1:16283758-16283777 | None:intergenic | 50.0% |
| !! | TTTTGGAGAAGAGGCCTCCA+AGG | - | chr8.1:16284472-16284491 | None:intergenic | 50.0% |
| ATCGATCAGCAGACCGGAAC+AGG | + | chr8.1:16283827-16283846 | MS.gene044431:CDS | 55.0% | |
| CAGCGTGCTCGTCGTCTAAT+GGG | + | chr8.1:16285361-16285380 | MS.gene044431:CDS | 55.0% | |
| TCAGCGTGCTCGTCGTCTAA+TGG | + | chr8.1:16285360-16285379 | MS.gene044431:CDS | 55.0% | |
| !! | GCATCTGTTGGTTCCTGAGG+TGG | - | chr8.1:16284725-16284744 | None:intergenic | 55.0% |
| CAGGCTGCGAACTCCACCTC+AGG | + | chr8.1:16284709-16284728 | MS.gene044431:CDS | 65.0% | |
| CTGAGGTGGAGTTCGCAGCC+TGG | - | chr8.1:16284711-16284730 | None:intergenic | 65.0% | |
| CTGCATCCGAAGGGCAGTCC+AGG | + | chr8.1:16284690-16284709 | MS.gene044431:CDS | 65.0% | |
| TCGCAGCCTGGACTGCCCTT+CGG | - | chr8.1:16284699-16284718 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 16283622 | 16285390 | 16283622 | ID=MS.gene044431 |
| chr8.1 | mRNA | 16283622 | 16285390 | 16283622 | ID=MS.gene044431.t1;Parent=MS.gene044431 |
| chr8.1 | exon | 16283622 | 16284083 | 16283622 | ID=MS.gene044431.t1.exon1;Parent=MS.gene044431.t1 |
| chr8.1 | CDS | 16283622 | 16284083 | 16283622 | ID=cds.MS.gene044431.t1;Parent=MS.gene044431.t1 |
| chr8.1 | exon | 16284449 | 16284542 | 16284449 | ID=MS.gene044431.t1.exon2;Parent=MS.gene044431.t1 |
| chr8.1 | CDS | 16284449 | 16284542 | 16284449 | ID=cds.MS.gene044431.t1;Parent=MS.gene044431.t1 |
| chr8.1 | exon | 16284630 | 16284760 | 16284630 | ID=MS.gene044431.t1.exon3;Parent=MS.gene044431.t1 |
| chr8.1 | CDS | 16284630 | 16284760 | 16284630 | ID=cds.MS.gene044431.t1;Parent=MS.gene044431.t1 |
| chr8.1 | exon | 16285055 | 16285152 | 16285055 | ID=MS.gene044431.t1.exon4;Parent=MS.gene044431.t1 |
| chr8.1 | CDS | 16285055 | 16285152 | 16285055 | ID=cds.MS.gene044431.t1;Parent=MS.gene044431.t1 |
| chr8.1 | exon | 16285291 | 16285390 | 16285291 | ID=MS.gene044431.t1.exon5;Parent=MS.gene044431.t1 |
| chr8.1 | CDS | 16285291 | 16285390 | 16285291 | ID=cds.MS.gene044431.t1;Parent=MS.gene044431.t1 |
| Gene Sequence |
| Protein sequence |
