Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69311.t1 | XP_013457961.1 | 93.3 | 300 | 14 | 2 | 1 | 294 | 1 | 300 | 8.70E-142 | 513.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69311.t1 | Q9S7P9 | 62.0 | 303 | 103 | 4 | 1 | 294 | 1 | 300 | 6.0e-91 | 335.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69311.t1 | A0A072UQP3 | 93.3 | 300 | 14 | 2 | 1 | 294 | 1 | 300 | 6.3e-142 | 513.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene01756 | MS.gene69311 | PPI |
| MS.gene69311 | MS.gene062285 | PPI |
| MS.gene038424 | MS.gene69311 | PPI |
| MS.gene90588 | MS.gene69311 | PPI |
| MS.gene035217 | MS.gene69311 | PPI |
| MS.gene69311 | MS.gene22645 | PPI |
| MS.gene69311 | MS.gene017190 | PPI |
| MS.gene052542 | MS.gene69311 | PPI |
| MS.gene69311 | MS.gene82750 | PPI |
| MS.gene69311 | MS.gene50365 | PPI |
| MS.gene33736 | MS.gene69311 | PPI |
| MS.gene69311 | MS.gene55383 | PPI |
| MS.gene01343 | MS.gene69311 | PPI |
| MS.gene69311 | MS.gene99692 | PPI |
| MS.gene047508 | MS.gene69311 | PPI |
| MS.gene69311 | MS.gene065513 | PPI |
| MS.gene69311 | MS.gene027060 | PPI |
| MS.gene002374 | MS.gene69311 | PPI |
| MS.gene69311 | MS.gene01347 | PPI |
| MS.gene22643 | MS.gene69311 | PPI |
| MS.gene32192 | MS.gene69311 | PPI |
| MS.gene69311 | MS.gene53170 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69311.t1 | MTR_4g109310 | 95.000 | 300 | 9 | 2 | 1 | 294 | 1 | 300 | 0.0 | 577 |
| MS.gene69311.t1 | MTR_3g023720 | 65.203 | 296 | 101 | 1 | 1 | 294 | 1 | 296 | 4.39e-133 | 379 |
| MS.gene69311.t1 | MTR_8g021950 | 84.112 | 214 | 34 | 0 | 80 | 293 | 13 | 226 | 1.99e-130 | 370 |
| MS.gene69311.t1 | MTR_3g023720 | 66.667 | 231 | 75 | 1 | 1 | 229 | 1 | 231 | 3.25e-103 | 302 |
| MS.gene69311.t1 | MTR_5g043850 | 61.429 | 210 | 81 | 0 | 85 | 294 | 62 | 271 | 3.84e-89 | 266 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69311.t1 | AT5G61210 | 62.706 | 303 | 101 | 4 | 1 | 294 | 1 | 300 | 7.30e-125 | 358 |
| MS.gene69311.t1 | AT5G61210 | 62.706 | 303 | 101 | 4 | 1 | 294 | 1 | 300 | 7.30e-125 | 358 |
| MS.gene69311.t1 | AT1G13890 | 57.197 | 264 | 88 | 3 | 31 | 294 | 25 | 263 | 1.50e-99 | 293 |
| MS.gene69311.t1 | AT1G13890 | 57.197 | 264 | 88 | 3 | 31 | 294 | 25 | 263 | 1.50e-99 | 293 |
| MS.gene69311.t1 | AT5G07880 | 54.032 | 248 | 105 | 4 | 51 | 294 | 9 | 251 | 5.63e-84 | 253 |
| MS.gene69311.t1 | AT5G07880 | 54.032 | 248 | 105 | 4 | 51 | 294 | 9 | 251 | 5.63e-84 | 253 |
Find 72 sgRNAs with CRISPR-Local
Find 113 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTTTGGTTTCCATGTTT+TGG | 0.164104 | 8.2:-16532552 | None:intergenic |
| AAGAATAATTTCCGTGATTC+TGG | 0.208002 | 8.2:+16531919 | MS.gene69311:CDS |
| GTCAAATTTAAGTGATCTAT+TGG | 0.241177 | 8.2:+16533150 | MS.gene69311:CDS |
| GTCCTGAAACAGTTTGAAAA+AGG | 0.245218 | 8.2:+16533109 | MS.gene69311:intron |
| CAAACAATTGTGAACGGATT+TGG | 0.266871 | 8.2:-16532007 | None:intergenic |
| TCAGCGTGCTCGTCGTCTAA+TGG | 0.284873 | 8.2:+16533426 | MS.gene69311:CDS |
| CTTCCAGGGAGAAAAGCTTT+TGG | 0.287660 | 8.2:+16532508 | MS.gene69311:intron |
| GTTATTGTACGTGTCTTCTT+TGG | 0.296263 | 8.2:-16532566 | None:intergenic |
| AATTATTCTTATACCTGTTC+CGG | 0.301104 | 8.2:-16531906 | None:intergenic |
| CAGCGTGCTCGTCGTCTAAT+GGG | 0.360616 | 8.2:+16533427 | MS.gene69311:CDS |
| CGGGTTGGTGTTCACTTCTA+AGG | 0.370097 | 8.2:-16531821 | None:intergenic |
| ATCGATCAGCAGACCGGAAC+AGG | 0.386256 | 8.2:+16531893 | MS.gene69311:CDS |
| AAGAAGACACGTACAATAAC+AGG | 0.394267 | 8.2:+16532569 | MS.gene69311:CDS |
| TCAAATTTAAGTGATCTATT+GGG | 0.415335 | 8.2:+16533151 | MS.gene69311:CDS |
| CCTGAGGTGGAGTTCGCAGC+CGG | 0.441119 | 8.2:-16532775 | None:intergenic |
| CTTGGAACAGAGAGAGAAGT+TGG | 0.449507 | 8.2:+16532724 | MS.gene69311:CDS |
| TGATTCTGATGATGAGGAAA+AGG | 0.458014 | 8.2:+16531744 | MS.gene69311:CDS |
| TCGCAGCCGGGACTGCCCTT+CGG | 0.469937 | 8.2:-16532762 | None:intergenic |
| CTGAGGTGGAGTTCGCAGCC+GGG | 0.471265 | 8.2:-16532774 | None:intergenic |
| TCCTCATCATCAGAATCAAA+CGG | 0.472306 | 8.2:-16531739 | None:intergenic |
| GAATCAATCCGTGCAGGAGT+TGG | 0.484109 | 8.2:+16531951 | MS.gene69311:CDS |
| TTATGCTGTTTACAAGGCTC+AGG | 0.485262 | 8.2:+16531978 | MS.gene69311:CDS |
| AAAAGACATGGCTGTTGACA+TGG | 0.488301 | 8.2:+16533180 | MS.gene69311:CDS |
| TTTGCTCACCCTGGTGATGA+AGG | 0.490885 | 8.2:-16532077 | None:intergenic |
| GTGTCATCAACATCATCAAA+CGG | 0.494369 | 8.2:-16531841 | None:intergenic |
| CCGGCTGCGAACTCCACCTC+AGG | 0.510230 | 8.2:+16532775 | MS.gene69311:CDS |
| AGATGATGCGGTCAGAAGAA+AGG | 0.512949 | 8.2:+16532694 | MS.gene69311:intron |
| CTGCATCCGAAGGGCAGTCC+CGG | 0.519616 | 8.2:+16532756 | MS.gene69311:CDS |
| CAGGATTTAACATCATTGAC+AGG | 0.519852 | 8.2:-16531709 | None:intergenic |
| TGTCATCAACATCATCAAAC+GGG | 0.522938 | 8.2:-16531840 | None:intergenic |
| CTGTCAATGATGTTAAATCC+TGG | 0.525081 | 8.2:+16531710 | MS.gene69311:CDS |
| GGAGAATTATGCTGTTTACA+AGG | 0.528960 | 8.2:+16531972 | MS.gene69311:CDS |
| GAGTTGAATTTCCGAGTGAA+AGG | 0.537349 | 8.2:+16533397 | MS.gene69311:CDS |
| TCCGTTTGATTCTGATGATG+AGG | 0.540959 | 8.2:+16531738 | MS.gene69311:CDS |
| CAGAAGAAAGGGAAACCACT+TGG | 0.541759 | 8.2:+16532706 | MS.gene69311:CDS |
| GCATCTGTTGGTTCCTGAGG+TGG | 0.541871 | 8.2:-16532788 | None:intergenic |
| CGATGAACATACGTTGATGA+TGG | 0.545998 | 8.2:-16531874 | None:intergenic |
| TTGGAACAGAGAGAGAAGTT+GGG | 0.548541 | 8.2:+16532725 | MS.gene69311:CDS |
| GATGATGCGGTCAGAAGAAA+GGG | 0.550218 | 8.2:+16532695 | MS.gene69311:intron |
| ACATTGATCGAGATTTAAGT+CGG | 0.558173 | 8.2:+16532127 | MS.gene69311:CDS |
| ATTGGTCACCCTTCATCACC+AGG | 0.565796 | 8.2:+16532068 | MS.gene69311:CDS |
| GGATTGACTTCTGCATCCGA+AGG | 0.568407 | 8.2:+16532746 | MS.gene69311:CDS |
| TCTCTACTCCGCCAGAATCA+CGG | 0.572418 | 8.2:-16531930 | None:intergenic |
| CATTGATCGAGATTTAAGTC+GGG | 0.574898 | 8.2:+16532128 | MS.gene69311:CDS |
| ACTTCTCTCTCTGTTCCAAG+TGG | 0.575202 | 8.2:-16532721 | None:intergenic |
| ATGTTCATCGATCAGCAGAC+CGG | 0.577196 | 8.2:+16531887 | MS.gene69311:CDS |
| ACCAGGGTGAGCAAATTACT+AGG | 0.577859 | 8.2:+16532085 | MS.gene69311:CDS |
| AGAATCAAACGGATTCGACC+AGG | 0.580437 | 8.2:-16531728 | None:intergenic |
| TATCTTCAAACAATTGTGAA+CGG | 0.582211 | 8.2:-16532013 | None:intergenic |
| AGTAGAGAATCAATCCGTGC+AGG | 0.582352 | 8.2:+16531945 | MS.gene69311:CDS |
| GCTGATTAGCACCTTTCACT+CGG | 0.583306 | 8.2:-16533408 | None:intergenic |
| AGAGGATGCTGCCAAGACAT+TGG | 0.589813 | 8.2:+16532050 | MS.gene69311:CDS |
| GAGGCCTCTTCTCCAAAACA+TGG | 0.589915 | 8.2:+16532540 | MS.gene69311:CDS |
| TCCTAGTAATTTGCTCACCC+TGG | 0.593660 | 8.2:-16532086 | None:intergenic |
| ATGAAGGGTGACCAATGTCT+TGG | 0.599124 | 8.2:-16532061 | None:intergenic |
| ATCAACATCATCAAACGGGT+TGG | 0.602656 | 8.2:-16531836 | None:intergenic |
| AATAATTTCCGTGATTCTGG+CGG | 0.606685 | 8.2:+16531922 | MS.gene69311:CDS |
| ACATGGGATCAGAAATTGAG+AGG | 0.608886 | 8.2:+16533197 | MS.gene69311:CDS |
| GATCAATGTCAGTGGCGACA+TGG | 0.609207 | 8.2:-16532113 | None:intergenic |
| AGTGCATCTGTTGGTTCCTG+AGG | 0.613449 | 8.2:-16532791 | None:intergenic |
| ATAATTCTCCAACTCCTGCA+CGG | 0.621109 | 8.2:-16531959 | None:intergenic |
| GATAGCAGAGAACATAAGAG+AGG | 0.628193 | 8.2:+16532032 | MS.gene69311:CDS |
| AAAGACATGGCTGTTGACAT+GGG | 0.628546 | 8.2:+16533181 | MS.gene69311:CDS |
| GATTGACTTCTGCATCCGAA+GGG | 0.630700 | 8.2:+16532747 | MS.gene69311:CDS |
| TTGCTCACCCTGGTGATGAA+GGG | 0.636196 | 8.2:-16532076 | None:intergenic |
| ATCATCGTCTAAATGACTCA+AGG | 0.636326 | 8.2:-16533368 | None:intergenic |
| GAGTCATTTAGACGATGATG+TGG | 0.659325 | 8.2:+16533372 | MS.gene69311:CDS |
| ATTGGGAGAGCTAAAAGACA+TGG | 0.663652 | 8.2:+16533168 | MS.gene69311:CDS |
| AGATGCACTTGCAAAAGTCG+AGG | 0.670404 | 8.2:+16532805 | MS.gene69311:CDS |
| TAAATCTCGATCAATGTCAG+TGG | 0.678850 | 8.2:-16532121 | None:intergenic |
| TTCATGTTATGTAGATGATG+CGG | 0.714011 | 8.2:+16532682 | MS.gene69311:intron |
| TTGGTCACCCTTCATCACCA+GGG | 0.732586 | 8.2:+16532069 | MS.gene69311:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATTAGAAAAGAAAACATA+TGG | - | chr8.2:16532627-16532646 | None:intergenic | 15.0% |
| !!! | CTATTTTTTAAAATACTCAT+AGG | - | chr8.2:16532360-16532379 | None:intergenic | 15.0% |
| !! | AGAGTTTGCAATATTATTAA+TGG | - | chr8.2:16533012-16533031 | None:intergenic | 20.0% |
| !! | TCAAATTTAAGTGATCTATT+GGG | + | chr8.2:16533151-16533170 | MS.gene69311:CDS | 20.0% |
| !! | TTAAACAAATAACAAAGTGA+TGG | + | chr8.2:16533252-16533271 | MS.gene69311:intron | 20.0% |
| !!! | ATGGTTCTCATAATTTATTT+TGG | + | chr8.2:16533322-16533341 | MS.gene69311:intron | 20.0% |
| !!! | CAAGATAAATTTTTTCACAA+AGG | - | chr8.2:16532218-16532237 | None:intergenic | 20.0% |
| !!! | GTCAAAATTTAGTCAATTTT+CGG | - | chr8.2:16532474-16532493 | None:intergenic | 20.0% |
| !!! | TTGAAAGTATAGTAGTATAA+TGG | - | chr8.2:16532943-16532962 | None:intergenic | 20.0% |
| ! | AATTATTCTTATACCTGTTC+CGG | - | chr8.2:16531909-16531928 | None:intergenic | 25.0% |
| ! | AGTAACCAACAAAGATTAAA+CGG | - | chr8.2:16532918-16532937 | None:intergenic | 25.0% |
| ! | ATTAACCTCCAAAAATAACA+GGG | - | chr8.2:16532595-16532614 | None:intergenic | 25.0% |
| ! | GTCAAATTTAAGTGATCTAT+TGG | + | chr8.2:16533150-16533169 | MS.gene69311:CDS | 25.0% |
| ! | TAAATCCGTTTAATCTTTGT+TGG | + | chr8.2:16532910-16532929 | MS.gene69311:intron | 25.0% |
| ! | TATCTTCAAACAATTGTGAA+CGG | - | chr8.2:16532016-16532035 | None:intergenic | 25.0% |
| ! | TATTAACCTCCAAAAATAAC+AGG | - | chr8.2:16532596-16532615 | None:intergenic | 25.0% |
| ! | TTAACACTAAATATTGTGCA+AGG | - | chr8.2:16533063-16533082 | None:intergenic | 25.0% |
| !!! | TTTATTTTGGTAAATGTTGC+AGG | + | chr8.2:16533335-16533354 | MS.gene69311:intron | 25.0% |
| AAGAATAATTTCCGTGATTC+TGG | + | chr8.2:16531919-16531938 | MS.gene69311:CDS | 30.0% | |
| ACAAGTAAAGTCTTTCTCAA+AGG | - | chr8.2:16533299-16533318 | None:intergenic | 30.0% | |
| ACATTGATCGAGATTTAAGT+CGG | + | chr8.2:16532127-16532146 | MS.gene69311:CDS | 30.0% | |
| GAAAGACTTTACTTGTTCTA+TGG | + | chr8.2:16533303-16533322 | MS.gene69311:intron | 30.0% | |
| GTCCACAATATCAATTTGAA+CGG | - | chr8.2:16532268-16532287 | None:intergenic | 30.0% | |
| TCCACAATATCAATTTGAAC+GGG | - | chr8.2:16532267-16532286 | None:intergenic | 30.0% | |
| TCCTGAAACAGTTTGAAAAA+GGG | + | chr8.2:16533110-16533129 | MS.gene69311:intron | 30.0% | |
| TTCATGTTATGTAGATGATG+CGG | + | chr8.2:16532682-16532701 | MS.gene69311:intron | 30.0% | |
| TTGTGCTGTATCATTATCAT+AGG | + | chr8.2:16532649-16532668 | MS.gene69311:intron | 30.0% | |
| !! | ACATGAAGAAAGCACTATAT+AGG | - | chr8.2:16532188-16532207 | None:intergenic | 30.0% |
| AAGAAGACACGTACAATAAC+AGG | + | chr8.2:16532569-16532588 | MS.gene69311:CDS | 35.0% | |
| AATAATTTCCGTGATTCTGG+CGG | + | chr8.2:16531922-16531941 | MS.gene69311:CDS | 35.0% | |
| ACCCGTTCAAATTGATATTG+TGG | + | chr8.2:16532263-16532282 | MS.gene69311:intron | 35.0% | |
| ATCATCGTCTAAATGACTCA+AGG | - | chr8.2:16533371-16533390 | None:intergenic | 35.0% | |
| CAGGATTTAACATCATTGAC+AGG | - | chr8.2:16531712-16531731 | None:intergenic | 35.0% | |
| CATTGATCGAGATTTAAGTC+GGG | + | chr8.2:16532128-16532147 | MS.gene69311:CDS | 35.0% | |
| CTGTCAATGATGTTAAATCC+TGG | + | chr8.2:16531710-16531729 | MS.gene69311:CDS | 35.0% | |
| GTCCTGAAACAGTTTGAAAA+AGG | + | chr8.2:16533109-16533128 | MS.gene69311:intron | 35.0% | |
| GTGTCATCAACATCATCAAA+CGG | - | chr8.2:16531844-16531863 | None:intergenic | 35.0% | |
| GTTATTGTACGTGTCTTCTT+TGG | - | chr8.2:16532569-16532588 | None:intergenic | 35.0% | |
| TAAATCTCGATCAATGTCAG+TGG | - | chr8.2:16532124-16532143 | None:intergenic | 35.0% | |
| TAACAAAGTGATGGTCGATT+TGG | + | chr8.2:16533261-16533280 | MS.gene69311:intron | 35.0% | |
| TCCTCATCATCAGAATCAAA+CGG | - | chr8.2:16531742-16531761 | None:intergenic | 35.0% | |
| TGTATTATTACCTGCTTCCA+GGG | + | chr8.2:16532494-16532513 | MS.gene69311:intron | 35.0% | |
| TGTCATCAACATCATCAAAC+GGG | - | chr8.2:16531843-16531862 | None:intergenic | 35.0% | |
| ! | CAAACAATTGTGAACGGATT+TGG | - | chr8.2:16532010-16532029 | None:intergenic | 35.0% |
| ! | GGAGAATTATGCTGTTTACA+AGG | + | chr8.2:16531972-16531991 | MS.gene69311:CDS | 35.0% |
| ! | TCTTTTCTCATAAGTGCTTG+TGG | - | chr8.2:16532315-16532334 | None:intergenic | 35.0% |
| ! | TGATTCTGATGATGAGGAAA+AGG | + | chr8.2:16531744-16531763 | MS.gene69311:CDS | 35.0% |
| !! | CTTCTTTGGTTTCCATGTTT+TGG | - | chr8.2:16532555-16532574 | None:intergenic | 35.0% |
| !!! | ATAACAGGCCCTGTTATTTT+TGG | + | chr8.2:16532584-16532603 | MS.gene69311:CDS | 35.0% |
| !!! | TCCCTTTTTCAAACTGTTTC+AGG | - | chr8.2:16533114-16533133 | None:intergenic | 35.0% |
| AAAAGACATGGCTGTTGACA+TGG | + | chr8.2:16533180-16533199 | MS.gene69311:CDS | 40.0% | |
| AAAGACATGGCTGTTGACAT+GGG | + | chr8.2:16533181-16533200 | MS.gene69311:CDS | 40.0% | |
| ACATGGGATCAGAAATTGAG+AGG | + | chr8.2:16533197-16533216 | MS.gene69311:CDS | 40.0% | |
| ATAATTCTCCAACTCCTGCA+CGG | - | chr8.2:16531962-16531981 | None:intergenic | 40.0% | |
| ATCAACATCATCAAACGGGT+TGG | - | chr8.2:16531839-16531858 | None:intergenic | 40.0% | |
| ATTGGGAGAGCTAAAAGACA+TGG | + | chr8.2:16533168-16533187 | MS.gene69311:CDS | 40.0% | |
| CTGTATTATTACCTGCTTCC+AGG | + | chr8.2:16532493-16532512 | MS.gene69311:intron | 40.0% | |
| GAGTCATTTAGACGATGATG+TGG | + | chr8.2:16533372-16533391 | MS.gene69311:CDS | 40.0% | |
| GAGTTGAATTTCCGAGTGAA+AGG | + | chr8.2:16533397-16533416 | MS.gene69311:CDS | 40.0% | |
| GATAGCAGAGAACATAAGAG+AGG | + | chr8.2:16532032-16532051 | MS.gene69311:CDS | 40.0% | |
| TTGGAACAGAGAGAGAAGTT+GGG | + | chr8.2:16532725-16532744 | MS.gene69311:CDS | 40.0% | |
| ! | AAAGCTTTGTCAAGTTCAGC+AGG | - | chr8.2:16532875-16532894 | None:intergenic | 40.0% |
| ! | ACTTTTGCAAGTGCATCTGT+TGG | - | chr8.2:16532803-16532822 | None:intergenic | 40.0% |
| ! | CGATGAACATACGTTGATGA+TGG | - | chr8.2:16531877-16531896 | None:intergenic | 40.0% |
| ! | TCCGTTTGATTCTGATGATG+AGG | + | chr8.2:16531738-16531757 | MS.gene69311:CDS | 40.0% |
| ! | TTATGCTGTTTACAAGGCTC+AGG | + | chr8.2:16531978-16531997 | MS.gene69311:CDS | 40.0% |
| ! | TTCCAGGGAGAAAAGCTTTT+GGG | + | chr8.2:16532509-16532528 | MS.gene69311:intron | 40.0% |
| !!! | GTTTCCATGTTTTGGAGAAG+AGG | - | chr8.2:16532547-16532566 | None:intergenic | 40.0% |
| ACCAGGGTGAGCAAATTACT+AGG | + | chr8.2:16532085-16532104 | MS.gene69311:CDS | 45.0% | |
| ACTTCTCTCTCTGTTCCAAG+TGG | - | chr8.2:16532724-16532743 | None:intergenic | 45.0% | |
| AGATGATGCGGTCAGAAGAA+AGG | + | chr8.2:16532694-16532713 | MS.gene69311:intron | 45.0% | |
| AGATGCACTTGCAAAAGTCG+AGG | + | chr8.2:16532805-16532824 | MS.gene69311:CDS | 45.0% | |
| AGTAGAGAATCAATCCGTGC+AGG | + | chr8.2:16531945-16531964 | MS.gene69311:CDS | 45.0% | |
| AGTCGAGGTTCGTATCTACT+CGG | + | chr8.2:16532820-16532839 | MS.gene69311:intron | 45.0% | |
| ATGAAGGGTGACCAATGTCT+TGG | - | chr8.2:16532064-16532083 | None:intergenic | 45.0% | |
| ATGTTCATCGATCAGCAGAC+CGG | + | chr8.2:16531887-16531906 | MS.gene69311:CDS | 45.0% | |
| CAGAAGAAAGGGAAACCACT+TGG | + | chr8.2:16532706-16532725 | MS.gene69311:CDS | 45.0% | |
| CTTGGAACAGAGAGAGAAGT+TGG | + | chr8.2:16532724-16532743 | MS.gene69311:CDS | 45.0% | |
| GATGATGCGGTCAGAAGAAA+GGG | + | chr8.2:16532695-16532714 | MS.gene69311:intron | 45.0% | |
| GCTGATTAGCACCTTTCACT+CGG | - | chr8.2:16533411-16533430 | None:intergenic | 45.0% | |
| ! | AGAATCAAACGGATTCGACC+AGG | - | chr8.2:16531731-16531750 | None:intergenic | 45.0% |
| ! | AGTCAATTTTCGGCACAGCT+TGG | - | chr8.2:16532464-16532483 | None:intergenic | 45.0% |
| ! | CTTCCAGGGAGAAAAGCTTT+TGG | + | chr8.2:16532508-16532527 | MS.gene69311:intron | 45.0% |
| ! | GATTGACTTCTGCATCCGAA+GGG | + | chr8.2:16532747-16532766 | MS.gene69311:CDS | 45.0% |
| ! | GTCAATTTTCGGCACAGCTT+GGG | - | chr8.2:16532463-16532482 | None:intergenic | 45.0% |
| ! | TTCCCAAAAGCTTTTCTCCC+TGG | - | chr8.2:16532514-16532533 | None:intergenic | 45.0% |
| !! | GAAAAGCTTTTGGGAAGCCT+TGG | + | chr8.2:16532518-16532537 | MS.gene69311:CDS | 45.0% |
| !! | TCCTAGTAATTTGCTCACCC+TGG | - | chr8.2:16532089-16532108 | None:intergenic | 45.0% |
| !!! | ACAGGCCCTGTTATTTTTGG+AGG | + | chr8.2:16532587-16532606 | MS.gene69311:CDS | 45.0% |
| AGAGGATGCTGCCAAGACAT+TGG | + | chr8.2:16532050-16532069 | MS.gene69311:CDS | 50.0% | |
| ATTGGTCACCCTTCATCACC+AGG | + | chr8.2:16532068-16532087 | MS.gene69311:CDS | 50.0% | |
| GAATCAATCCGTGCAGGAGT+TGG | + | chr8.2:16531951-16531970 | MS.gene69311:CDS | 50.0% | |
| GAGGCCTCTTCTCCAAAACA+TGG | + | chr8.2:16532540-16532559 | MS.gene69311:CDS | 50.0% | |
| GATCAATGTCAGTGGCGACA+TGG | - | chr8.2:16532116-16532135 | None:intergenic | 50.0% | |
| TCTCTACTCCGCCAGAATCA+CGG | - | chr8.2:16531933-16531952 | None:intergenic | 50.0% | |
| TTGGTCACCCTTCATCACCA+GGG | + | chr8.2:16532069-16532088 | MS.gene69311:CDS | 50.0% | |
| ! | AAGCTTTTCTCCCTGGAAGC+AGG | - | chr8.2:16532507-16532526 | None:intergenic | 50.0% |
| ! | GGATTGACTTCTGCATCCGA+AGG | + | chr8.2:16532746-16532765 | MS.gene69311:CDS | 50.0% |
| ! | TTGCTCACCCTGGTGATGAA+GGG | - | chr8.2:16532079-16532098 | None:intergenic | 50.0% |
| ! | TTTGCTCACCCTGGTGATGA+AGG | - | chr8.2:16532080-16532099 | None:intergenic | 50.0% |
| !! | AAGCTTTTGGGAAGCCTTGG+AGG | + | chr8.2:16532521-16532540 | MS.gene69311:CDS | 50.0% |
| !! | AGTGCATCTGTTGGTTCCTG+AGG | - | chr8.2:16532794-16532813 | None:intergenic | 50.0% |
| !! | CGGGTTGGTGTTCACTTCTA+AGG | - | chr8.2:16531824-16531843 | None:intergenic | 50.0% |
| !! | TTTTGGAGAAGAGGCCTCCA+AGG | - | chr8.2:16532538-16532557 | None:intergenic | 50.0% |
| ATCGATCAGCAGACCGGAAC+AGG | + | chr8.2:16531893-16531912 | MS.gene69311:CDS | 55.0% | |
| CAGCGTGCTCGTCGTCTAAT+GGG | + | chr8.2:16533427-16533446 | MS.gene69311:CDS | 55.0% | |
| TCAGCGTGCTCGTCGTCTAA+TGG | + | chr8.2:16533426-16533445 | MS.gene69311:CDS | 55.0% | |
| !! | GCATCTGTTGGTTCCTGAGG+TGG | - | chr8.2:16532791-16532810 | None:intergenic | 55.0% |
| CCTGAGGTGGAGTTCGCAGC+CGG | - | chr8.2:16532778-16532797 | None:intergenic | 65.0% | |
| CTGAGGTGGAGTTCGCAGCC+GGG | - | chr8.2:16532777-16532796 | None:intergenic | 65.0% | |
| CTGCATCCGAAGGGCAGTCC+CGG | + | chr8.2:16532756-16532775 | MS.gene69311:CDS | 65.0% | |
| CCGGCTGCGAACTCCACCTC+AGG | + | chr8.2:16532775-16532794 | MS.gene69311:CDS | 70.0% | |
| TCGCAGCCGGGACTGCCCTT+CGG | - | chr8.2:16532765-16532784 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 16531688 | 16533456 | 16531688 | ID=MS.gene69311 |
| chr8.2 | mRNA | 16531688 | 16533456 | 16531688 | ID=MS.gene69311.t1;Parent=MS.gene69311 |
| chr8.2 | exon | 16531688 | 16532149 | 16531688 | ID=MS.gene69311.t1.exon1;Parent=MS.gene69311.t1 |
| chr8.2 | CDS | 16531688 | 16532149 | 16531688 | ID=cds.MS.gene69311.t1;Parent=MS.gene69311.t1 |
| chr8.2 | exon | 16532515 | 16532608 | 16532515 | ID=MS.gene69311.t1.exon2;Parent=MS.gene69311.t1 |
| chr8.2 | CDS | 16532515 | 16532608 | 16532515 | ID=cds.MS.gene69311.t1;Parent=MS.gene69311.t1 |
| chr8.2 | exon | 16532696 | 16532826 | 16532696 | ID=MS.gene69311.t1.exon3;Parent=MS.gene69311.t1 |
| chr8.2 | CDS | 16532696 | 16532826 | 16532696 | ID=cds.MS.gene69311.t1;Parent=MS.gene69311.t1 |
| chr8.2 | exon | 16533121 | 16533218 | 16533121 | ID=MS.gene69311.t1.exon4;Parent=MS.gene69311.t1 |
| chr8.2 | CDS | 16533121 | 16533218 | 16533121 | ID=cds.MS.gene69311.t1;Parent=MS.gene69311.t1 |
| chr8.2 | exon | 16533357 | 16533456 | 16533357 | ID=MS.gene69311.t1.exon5;Parent=MS.gene69311.t1 |
| chr8.2 | CDS | 16533357 | 16533456 | 16533357 | ID=cds.MS.gene69311.t1;Parent=MS.gene69311.t1 |
| Gene Sequence |
| Protein sequence |
