AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene029003


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene029003.t1 MTR_4g050990 98.309 414 7 0 1 414 1 414 0.0 829
MS.gene029003.t1 MTR_2g089520 98.309 414 7 0 1 414 1 414 0.0 829
MS.gene029003.t1 MTR_0008s0170 82.850 414 71 0 1 414 1 414 0.0 704
MS.gene029003.t1 MTR_0008s0130 77.053 414 95 0 1 414 1 414 0.0 666
MS.gene029003.t1 MTR_2g047968 77.561 410 92 0 1 410 1 410 0.0 632
MS.gene029003.t1 MTR_2g011600 69.853 408 121 2 7 412 14 421 0.0 582
MS.gene029003.t1 MTR_2g011580 70.526 380 111 1 34 412 1 380 0.0 549
MS.gene029003.t1 MTR_2g011600 69.146 363 110 2 52 412 8 370 0.0 511
MS.gene029003.t1 MTR_1g071120 71.633 349 90 3 11 358 53 393 1.20e-177 502
MS.gene029003.t1 MTR_8g007285 60.882 363 140 1 52 412 2 364 2.16e-147 423
MS.gene029003.t1 MTR_0003s0470 32.289 415 241 12 11 410 26 415 4.19e-54 185
MS.gene029003.t1 MTR_3g462280 30.673 401 251 7 18 410 42 423 1.60e-45 162
MS.gene029003.t1 MTR_4g114710 28.941 425 255 11 1 410 6 398 2.29e-41 151
MS.gene029003.t1 MTR_2g011530 71.739 92 25 1 278 368 2 93 1.24e-37 132
MS.gene029003.t1 MTR_2g011540 50.370 135 60 1 52 179 2 136 1.04e-36 131
MS.gene029003.t1 MTR_2g011560 38.060 134 32 2 177 310 17 99 3.79e-17 77.4
MS.gene029003.t1 MTR_2g011570 55.385 65 22 1 137 201 1 58 1.60e-13 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene029003.t1 AT4G05120 71.324 408 116 1 5 412 8 414 0.0 612
MS.gene029003.t1 AT4G05120 71.324 408 116 1 5 412 8 414 0.0 612
MS.gene029003.t1 AT4G05110 67.647 408 131 1 5 412 8 414 0.0 580
MS.gene029003.t1 AT4G05110 67.647 408 131 1 5 412 8 414 0.0 580
MS.gene029003.t1 AT4G05110 67.402 408 132 1 5 412 8 414 0.0 578
MS.gene029003.t1 AT4G05140 66.912 408 135 0 5 412 8 415 0.0 575
MS.gene029003.t1 AT4G05130 64.720 411 142 2 5 414 8 416 0.0 556
MS.gene029003.t1 AT3G09990 64.706 408 143 1 8 414 10 417 0.0 543
MS.gene029003.t1 AT1G61630 61.722 418 150 3 1 412 1 414 0.0 513
MS.gene029003.t1 AT1G70330 31.477 413 239 8 16 410 64 450 9.80e-51 177
MS.gene029003.t1 AT1G02630 29.298 413 252 9 5 410 10 389 1.16e-48 170
MS.gene029003.t1 AT1G02630 28.708 209 146 3 5 212 10 216 2.35e-24 103

Find 89 sgRNAs with CRISPR-Local

Find 201 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTCTTGAAATTCTTGAAAT+TGG 0.116609 2.3:-11465751 MS.gene029003:CDS
GTGCATTAACCTCTGCTTTA+AGG 0.117350 2.3:-11466666 MS.gene029003:CDS
TTACTACATTTACTTGTTTC+CGG 0.228601 2.3:-11468252 MS.gene029003:intron
GAAAGAAATAGTACTTCTTT+AGG 0.270591 2.3:+11466243 None:intergenic
AGCAGCATTTGATAATTCTA+AGG 0.310431 2.3:-11466632 MS.gene029003:CDS
GGGAAAATATGCTGCAATAT+TGG 0.315284 2.3:-11468336 MS.gene029003:CDS
GATAATGTTGACATCATTCT+TGG 0.317000 2.3:-11465634 MS.gene029003:CDS
ATCTGCACCCAAAGGTTATA+AGG 0.323238 2.3:-11465574 MS.gene029003:intron
GTACTTCTTTAGGTATTGTT+TGG 0.329362 2.3:+11466253 None:intergenic
CAAAAGTCAATACTAGATTA+AGG 0.350479 2.3:-11467465 MS.gene029003:CDS
AGAGTGTCAATGCATAAATT+AGG 0.353300 2.3:+11466064 None:intergenic
AGGTCTTACCTTATAACCTT+TGG 0.354635 2.3:+11465566 None:intergenic
CTATGTGGTTTGGCAGCATC+TGG 0.357354 2.3:-11466688 MS.gene029003:CDS
GGTCTTACCTTATAACCTTT+GGG 0.357526 2.3:+11465567 None:intergenic
ATATTGGTATGCTTCCTTCT+TGG 0.358786 2.3:-11468320 MS.gene029003:CDS
CTAGACTGGTTGTGGTTGAT+AGG 0.364036 2.3:-11465251 MS.gene029003:CDS
AAGCTCAAAGAATGTTGATA+TGG 0.364975 2.3:+11466395 None:intergenic
TACAATGTGTGGGATCTAAT+AGG 0.376699 2.3:-11465786 MS.gene029003:CDS
TAGCTGACCTGAATGAATTC+TGG 0.378851 2.3:+11467176 None:intergenic
GATACTGGAGCACATAGTTT+AGG 0.386930 2.3:-11466015 MS.gene029003:CDS
AAGATCAGCTGAAACCGTTT+TGG 0.400371 2.3:+11466290 None:intergenic
GTACGGTAGTATTTCACAAT+TGG 0.413573 2.3:+11466333 None:intergenic
ACAGTCTTTCCTATGTGGTT+TGG 0.413718 2.3:-11466698 MS.gene029003:intron
ATAATGTTGACATCATTCTT+GGG 0.414131 2.3:-11465633 MS.gene029003:CDS
GGATTTCTGTCTGAAGATAC+TGG 0.422546 2.3:-11466030 MS.gene029003:CDS
GGGTCCAGAACAAAATGCTT+TGG 0.429540 2.3:-11465324 MS.gene029003:CDS
GTATGCTTCCTTCTTGGCAA+TGG 0.430207 2.3:-11468314 MS.gene029003:CDS
CATGTTCAAGGTGGAATGAT+TGG 0.433600 2.3:-11467218 MS.gene029003:CDS
CATGAAGCCAGAATTCATTC+AGG 0.440760 2.3:-11467183 MS.gene029003:intron
GTATCTTCAGACAGAAATCC+AGG 0.444209 2.3:+11466033 None:intergenic
GGTCCAGAACAAAATGCTTT+GGG 0.444913 2.3:-11465323 MS.gene029003:CDS
ACTAGATTAAGGAACCTGTT+TGG 0.445916 2.3:-11467454 MS.gene029003:CDS
TAGTTGGATTTAGCAACATC+TGG 0.446987 2.3:-11467308 MS.gene029003:CDS
TTGGTGTTGTTTCTACTTGG+AGG 0.450252 2.3:-11465293 MS.gene029003:CDS
TGCTATATTGTCTTATAATG+AGG 0.452571 2.3:-11467488 MS.gene029003:CDS
TTGTTGGTGTTGTTTCTACT+TGG 0.466918 2.3:-11465296 MS.gene029003:CDS
AAATGCTTTGGGAAACTTGT+TGG 0.472777 2.3:-11465312 MS.gene029003:CDS
TCTAAGGATGGTCTTAGAAA+AGG 0.472918 2.3:-11466616 MS.gene029003:CDS
TGTGCAATTAGTGGTGCCTT+TGG 0.477018 2.3:-11467254 MS.gene029003:CDS
TGCAGAATTATCATCCCTCC+AGG 0.479683 2.3:-11467552 MS.gene029003:intron
GCAAGTGTTCCAACTGCAAA+TGG 0.482568 2.3:+11467508 None:intergenic
GGGTTACACTAGACTGGTTG+TGG 0.484518 2.3:-11465259 MS.gene029003:CDS
ACTGCAAAGTATGGTGATCA+AGG 0.485522 2.3:-11465663 MS.gene029003:CDS
ATTGGTATATGTGCAATTAG+TGG 0.486598 2.3:-11467263 MS.gene029003:CDS
ATGTTACAGTCTTTCCTATG+TGG 0.489292 2.3:-11466703 MS.gene029003:intron
TCAGCTGATCTTGCAGCTGG+TGG 0.503591 2.3:-11466279 MS.gene029003:CDS
AAAGACATCCATTGCCAAGA+AGG 0.509411 2.3:+11468306 None:intergenic
GTTTCAGCTGATCTTGCAGC+TGG 0.510600 2.3:-11466282 MS.gene029003:CDS
GTGTTCCAACTGCAAATGGC+TGG 0.520973 2.3:+11467512 None:intergenic
TGTAATTAACCTTAAAGCAG+AGG 0.522589 2.3:+11466657 None:intergenic
TTGCAGGGGTTACACTAGAC+TGG 0.523837 2.3:-11465265 MS.gene029003:CDS
ATTTCAAGAATTTCAAGAGT+GGG 0.530371 2.3:+11465754 None:intergenic
GATTTAGCAACATCTGGTAA+AGG 0.531613 2.3:-11467302 MS.gene029003:CDS
ACATCTGGTAAAGGAGGACT+TGG 0.542893 2.3:-11467293 MS.gene029003:CDS
ACAAACAGTGAGGTAACCAT+TGG 0.544603 2.3:+11465605 None:intergenic
TTTGCAGTGAAATAAAATGC+TGG 0.546823 2.3:+11465678 None:intergenic
GCATAAACCTCTAGACGTGT+TGG 0.547583 2.3:+11468450 None:intergenic
GTTGCAGATGCTCATGTTCA+AGG 0.549362 2.3:-11467230 MS.gene029003:CDS
TGTGGTTGATAGGCAAAGGT+TGG 0.549746 2.3:-11465241 MS.gene029003:CDS
CAAAGTATGGTGATCAAGGT+TGG 0.550801 2.3:-11465659 MS.gene029003:CDS
GCATTTGATAATTCTAAGGA+TGG 0.554074 2.3:-11466628 MS.gene029003:CDS
TCATTCTTGGGGCTATCCAA+TGG 0.554884 2.3:-11465621 MS.gene029003:CDS
TGCACACAAACAAGAGAGGA+AGG 0.556796 2.3:-11466136 MS.gene029003:CDS
GTATACCAGCCATTTGCAGT+TGG 0.574201 2.3:-11467517 MS.gene029003:CDS
TAAACCTCTAGACGTGTTGG+AGG 0.581439 2.3:+11468453 None:intergenic
AGCATCAGAAGGATCCAAAA+CGG 0.581586 2.3:-11466304 MS.gene029003:CDS
TAATGTTGACATCATTCTTG+GGG 0.600627 2.3:-11465632 MS.gene029003:CDS
AATGAATTCTGGCTTCATGT+AGG 0.600985 2.3:+11467187 None:intergenic
TGAGCCTCCAACACGTCTAG+AGG 0.604316 2.3:-11468457 MS.gene029003:intron
AATTTCAAGAATTTCAAGAG+TGG 0.605836 2.3:+11465753 None:intergenic
TTAGCAACATCTGGTAAAGG+AGG 0.617570 2.3:-11467299 MS.gene029003:CDS
CAGATGCTGCCAAACCACAT+AGG 0.618573 2.3:+11466689 None:intergenic
TAATTGCAATGTACAATGTG+TGG 0.621011 2.3:-11465797 MS.gene029003:CDS
CGTACAAAAGCAGCATCAGA+AGG 0.622959 2.3:-11466315 MS.gene029003:CDS
ATGAGCATCTGCAACTCCAA+AGG 0.623544 2.3:+11467238 None:intergenic
AATTGCAATGTACAATGTGT+GGG 0.632930 2.3:-11465796 MS.gene029003:CDS
GTTATGACATCTGCACCCAA+AGG 0.634499 2.3:-11465582 MS.gene029003:CDS
TGGAGGCTCAACGTTGACCA+TGG 0.638186 2.3:+11468470 None:intergenic
TATCTTCAGACAGAAATCCA+GGG 0.655976 2.3:+11466034 None:intergenic
ACAAGTGTAAGCACCCTGGA+GGG 0.662948 2.3:+11467538 None:intergenic
GTATACAAGTGTAAGCACCC+TGG 0.665189 2.3:+11467534 None:intergenic
GAGCACATAGTTTAGGAACA+TGG 0.666302 2.3:-11466008 MS.gene029003:intron
TGGTTGTGGTTGATAGGCAA+AGG 0.669026 2.3:-11465245 MS.gene029003:CDS
GCACACAAACAAGAGAGGAA+GGG 0.670991 2.3:-11466135 MS.gene029003:CDS
ATCATGCACACAAACAAGAG+AGG 0.673529 2.3:-11466140 MS.gene029003:CDS
TACAAGTGTAAGCACCCTGG+AGG 0.676424 2.3:+11467537 None:intergenic
GCAGAATTATCATCCCTCCA+GGG 0.701785 2.3:-11467551 MS.gene029003:intron
GCAGATGCTCATGTTCAAGG+TGG 0.722859 2.3:-11467227 MS.gene029003:CDS
ATGTCATAACACAAACAGTG+AGG 0.743595 2.3:+11465595 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATTATTATCACATTATA+AGG + chr2.3:11467529-11467548 None:intergenic 10.0%
!!! ATTAAAATTATTAGCTTTTT+AGG + chr2.3:11466773-11466792 None:intergenic 10.0%
!!! TTATGTTTTAATTTATTGTA+GGG - chr2.3:11468362-11468381 MS.gene029003:intron 10.0%
!!! TTTATGTTTTAATTTATTGT+AGG - chr2.3:11468361-11468380 MS.gene029003:intron 10.0%
!! AAAATTACCAAAGATTTAAA+AGG + chr2.3:11467742-11467761 None:intergenic 15.0%
!! AATTTATAATTAAGATTGAG+AGG - chr2.3:11465582-11465601 MS.gene029003:CDS 15.0%
!! ATATAAATATAAAACTGCAT+TGG + chr2.3:11465767-11465786 None:intergenic 15.0%
!! CATAAATATTAATGTGAATT+TGG + chr2.3:11468347-11468366 None:intergenic 15.0%
!! TATAAATATAAAACTGCATT+GGG + chr2.3:11465766-11465785 None:intergenic 15.0%
!! TATTATAGTAGTGTTTAATT+TGG - chr2.3:11468171-11468190 MS.gene029003:intron 15.0%
!!! AATAATTTTAATTTCTATGG+TGG - chr2.3:11466781-11466800 MS.gene029003:intron 15.0%
!!! ATTAGATGAAATTTTGATTA+TGG + chr2.3:11467157-11467176 None:intergenic 15.0%
!!! GCTAATAATTTTAATTTCTA+TGG - chr2.3:11466778-11466797 MS.gene029003:intron 15.0%
!!! TTCATTTTTTTTCTTGTTAT+TGG - chr2.3:11465339-11465358 MS.gene029003:intron 15.0%
!! AAAACGTAAAACAAATTGTA+GGG - chr2.3:11465724-11465743 MS.gene029003:CDS 20.0%
!! AAACCAAACATAACAATTTA+TGG + chr2.3:11466711-11466730 None:intergenic 20.0%
!! ACAATTAGTTGAATAGATAA+AGG + chr2.3:11466324-11466343 None:intergenic 20.0%
!! ATAAATATAAAACTGCATTG+GGG + chr2.3:11465765-11465784 None:intergenic 20.0%
!! ATCAAACATAAACGAAATTA+TGG + chr2.3:11466656-11466675 None:intergenic 20.0%
!! ATTTGGATTTCATATAGTAT+AGG + chr2.3:11468330-11468349 None:intergenic 20.0%
!! CTAAATAGTATATAGAGTAA+TGG + chr2.3:11467250-11467269 None:intergenic 20.0%
!! TCCAACTACATTAAATTTAT+TGG + chr2.3:11466386-11466405 None:intergenic 20.0%
!! TCCAATAAATTTAATGTAGT+TGG - chr2.3:11466382-11466401 MS.gene029003:CDS 20.0%
!! TTTATGTTTGATTCTATCTT+TGG - chr2.3:11466664-11466683 MS.gene029003:CDS 20.0%
!! TTTGGATTTCATATAGTATA+GGG + chr2.3:11468329-11468348 None:intergenic 20.0%
!!! AATTGCACAAATCTATTTTT+TGG - chr2.3:11465535-11465554 MS.gene029003:intron 20.0%
!!! AGTTGTGCTTATAATTTTTT+AGG - chr2.3:11467873-11467892 MS.gene029003:intron 20.0%
!!! ATTTTACGTTCAATTAATTC+AGG - chr2.3:11466913-11466932 MS.gene029003:intron 20.0%
!!! GATAATAATTTTCCTTTTTC+AGG - chr2.3:11467537-11467556 MS.gene029003:CDS 20.0%
!!! GATTTTTATCGATTTATGTT+AGG + chr2.3:11466862-11466881 None:intergenic 20.0%
!!! TACTTTTATTTGCTTAAGAA+TGG - chr2.3:11465296-11465315 MS.gene029003:CDS 20.0%
!!! TATTTATGCTTTAAGGATAT+TGG + chr2.3:11468300-11468319 None:intergenic 20.0%
!!! TATTTCACAATTGGTATTTT+AGG + chr2.3:11467367-11467386 None:intergenic 20.0%
!!! TTTTTTCATAACCACTTTTT+TGG - chr2.3:11466284-11466303 MS.gene029003:CDS 20.0%
! AAAGTACACAAATTACATAC+CGG + chr2.3:11465476-11465495 None:intergenic 25.0%
! AACACAATTGCAATTATGAA+TGG + chr2.3:11466578-11466597 None:intergenic 25.0%
! AATTTCAAGAATTTCAAGAG+TGG + chr2.3:11467956-11467975 None:intergenic 25.0%
! ACTACTATAATATACTCTCA+AGG + chr2.3:11468163-11468182 None:intergenic 25.0%
! ACTCTTGAAATTCTTGAAAT+TGG - chr2.3:11467955-11467974 MS.gene029003:intron 25.0%
! ATAATGTTGACATCATTCTT+GGG - chr2.3:11468073-11468092 MS.gene029003:intron 25.0%
! ATCTATGATACTTACATCTA+TGG - chr2.3:11466974-11466993 MS.gene029003:intron 25.0%
! ATTTCAAGAATTTCAAGAGT+GGG + chr2.3:11467955-11467974 None:intergenic 25.0%
! CAAAACGTAAAACAAATTGT+AGG - chr2.3:11465723-11465742 MS.gene029003:CDS 25.0%
! CAAAAGTCAATACTAGATTA+AGG - chr2.3:11466241-11466260 MS.gene029003:intron 25.0%
! CAATAGCAACAAATAAGAAT+TGG + chr2.3:11467204-11467223 None:intergenic 25.0%
! GAAAATCAAAATCATCCTAA+AGG + chr2.3:11466364-11466383 None:intergenic 25.0%
! GAAAGAAATAGTACTTCTTT+AGG + chr2.3:11467466-11467485 None:intergenic 25.0%
! TACTATTAACACCAAAAAAG+TGG + chr2.3:11466298-11466317 None:intergenic 25.0%
! TATTTGCTTAAGAATGGAAA+TGG - chr2.3:11465302-11465321 MS.gene029003:CDS 25.0%
! TGACCATAAATTGTTATGTT+TGG - chr2.3:11466705-11466724 MS.gene029003:intron 25.0%
! TGCTATATTGTCTTATAATG+AGG - chr2.3:11466218-11466237 MS.gene029003:intron 25.0%
! TTAAATTACACCAACATACA+AGG + chr2.3:11466076-11466095 None:intergenic 25.0%
! TTACTACATTTACTTGTTTC+CGG - chr2.3:11465454-11465473 MS.gene029003:intron 25.0%
!! AAAAAAGAGTATATCCAAAC+AGG + chr2.3:11466269-11466288 None:intergenic 25.0%
!! GTTAGATTTTTACAATGTAG+CGG - chr2.3:11465639-11465658 MS.gene029003:CDS 25.0%
!! TGGCAATTTAGAACTATAAT+CGG + chr2.3:11466558-11466577 None:intergenic 25.0%
!! TTGATAATCTGGAATTCAAT+CGG + chr2.3:11465989-11466008 None:intergenic 25.0%
!!! CTACAATTTGTTTTACGTTT+TGG + chr2.3:11465725-11465744 None:intergenic 25.0%
!!! TCTTGTTATTGGTATTCATA+GGG - chr2.3:11465350-11465369 MS.gene029003:intron 25.0%
!!! TTCTTGTTATTGGTATTCAT+AGG - chr2.3:11465349-11465368 MS.gene029003:intron 25.0%
!!! TTTTATTTCACTGCAAAGTA+TGG - chr2.3:11468034-11468053 MS.gene029003:intron 25.0%
AAGCTCAAAGAATGTTGATA+TGG + chr2.3:11467314-11467333 None:intergenic 30.0%
AATTGCAATGTACAATGTGT+GGG - chr2.3:11467910-11467929 MS.gene029003:intron 30.0%
ACTTTGATTCCTTTACCTTT+AGG - chr2.3:11466346-11466365 MS.gene029003:CDS 30.0%
ATTGGTATATGTGCAATTAG+TGG - chr2.3:11466443-11466462 MS.gene029003:intron 30.0%
CAAAATCATCCTAAAGGTAA+AGG + chr2.3:11466358-11466377 None:intergenic 30.0%
GATAATGTTGACATCATTCT+TGG - chr2.3:11468072-11468091 MS.gene029003:intron 30.0%
GATCTGGTATTTATGCTTTA+AGG + chr2.3:11468307-11468326 None:intergenic 30.0%
TAAGAGTGAGTTTGATTATG+CGG + chr2.3:11466955-11466974 None:intergenic 30.0%
TAATGTTGACATCATTCTTG+GGG - chr2.3:11468074-11468093 MS.gene029003:intron 30.0%
TAATTGCAATGTACAATGTG+TGG - chr2.3:11467909-11467928 MS.gene029003:intron 30.0%
TCTAGAGGTTTATGCTTAAT+TGG - chr2.3:11465264-11465283 MS.gene029003:CDS 30.0%
TGTAATTAACCTTAAAGCAG+AGG + chr2.3:11467052-11467071 None:intergenic 30.0%
TTACCAAAGATTTAAAAGGC+AGG + chr2.3:11467738-11467757 None:intergenic 30.0%
TTTATCTACAGCAATCCATT+AGG + chr2.3:11467818-11467837 None:intergenic 30.0%
TTTCATATAGTATAGGGATC+TGG + chr2.3:11468323-11468342 None:intergenic 30.0%
TTTGCAGTGAAATAAAATGC+TGG + chr2.3:11468031-11468050 None:intergenic 30.0%
! AGAGTGTCAATGCATAAATT+AGG + chr2.3:11467645-11467664 None:intergenic 30.0%
! AGCAGCATTTGATAATTCTA+AGG - chr2.3:11467074-11467093 MS.gene029003:intron 30.0%
! GCATTTGATAATTCTAAGGA+TGG - chr2.3:11467078-11467097 MS.gene029003:intron 30.0%
! GTACTTCTTTAGGTATTGTT+TGG + chr2.3:11467456-11467475 None:intergenic 30.0%
! TGATAATCTGGAATTCAATC+GGG + chr2.3:11465988-11466007 None:intergenic 30.0%
! TTTTGTATCCATACATCTGT+CGG + chr2.3:11466819-11466838 None:intergenic 30.0%
!! AGTAGTGTTTAATTTGGAAC+CGG - chr2.3:11468177-11468196 MS.gene029003:intron 30.0%
!! GAAAAGAGGTTTTGATAATC+TGG + chr2.3:11466000-11466019 None:intergenic 30.0%
!! TTATGCTTTAAGGATATTGG+TGG + chr2.3:11468297-11468316 None:intergenic 30.0%
!!! AATTTTCCTTTTTCAGGATG+AGG - chr2.3:11467543-11467562 MS.gene029003:CDS 30.0%
!!! TGTTTTACGTTTTGGTTTTG+TGG + chr2.3:11465717-11465736 None:intergenic 30.0%
!!! TTGTTAACCCATCGATTTTT+CGG + chr2.3:11466022-11466041 None:intergenic 30.0%
AAGAACCTGAGTTCAATTTC+TGG - chr2.3:11465930-11465949 MS.gene029003:intron 35.0%
ACTAGATTAAGGAACCTGTT+TGG - chr2.3:11466252-11466271 MS.gene029003:intron 35.0%
AGGTCTTACCTTATAACCTT+TGG + chr2.3:11468143-11468162 None:intergenic 35.0%
ATAGAGTTCATTGACCACTT+GGG + chr2.3:11465891-11465910 None:intergenic 35.0%
ATATTGGTATGCTTCCTTCT+TGG - chr2.3:11465386-11465405 MS.gene029003:intron 35.0%
ATGTCATAACACAAACAGTG+AGG + chr2.3:11468114-11468133 None:intergenic 35.0%
ATGTTACAGTCTTTCCTATG+TGG - chr2.3:11467003-11467022 MS.gene029003:intron 35.0%
ATTCAATTCCGACAGATGTA+TGG - chr2.3:11466808-11466827 MS.gene029003:intron 35.0%
GATGGCTGTTTGATCAAAAT+CGG - chr2.3:11468239-11468258 MS.gene029003:intron 35.0%
GATTTAGCAACATCTGGTAA+AGG - chr2.3:11466404-11466423 MS.gene029003:CDS 35.0%
GGGAAAATATGCTGCAATAT+TGG - chr2.3:11465370-11465389 MS.gene029003:intron 35.0%
GGTCTTACCTTATAACCTTT+GGG + chr2.3:11468142-11468161 None:intergenic 35.0%
GTACGGTAGTATTTCACAAT+TGG + chr2.3:11467376-11467395 None:intergenic 35.0%
TACAATGTGTGGGATCTAAT+AGG - chr2.3:11467920-11467939 MS.gene029003:intron 35.0%
TAGTTGGATTTAGCAACATC+TGG - chr2.3:11466398-11466417 MS.gene029003:CDS 35.0%
TATCTTCAGACAGAAATCCA+GGG + chr2.3:11467675-11467694 None:intergenic 35.0%
TTCTACCAGAAATTGAACTC+AGG + chr2.3:11465938-11465957 None:intergenic 35.0%
TTGATCAAAATCGGATAGTC+TGG - chr2.3:11468248-11468267 MS.gene029003:intron 35.0%
! CTACCTGCCTTTTAAATCTT+TGG - chr2.3:11467732-11467751 MS.gene029003:intron 35.0%
! CTCTTTTCCGAAAAATCGAT+GGG - chr2.3:11466012-11466031 MS.gene029003:CDS 35.0%
! TCTAAGGATGGTCTTAGAAA+AGG - chr2.3:11467090-11467109 MS.gene029003:intron 35.0%
! TTTTACGAATCGAAACGACA+AGG - chr2.3:11467785-11467804 MS.gene029003:intron 35.0%
!! AAATGCTTTGGGAAACTTGT+TGG - chr2.3:11468394-11468413 MS.gene029003:intron 35.0%
!! AATGAATTCTGGCTTCATGT+AGG + chr2.3:11466522-11466541 None:intergenic 35.0%
!! TTGTTGGTGTTGTTTCTACT+TGG - chr2.3:11468410-11468429 MS.gene029003:intron 35.0%
!! TTTCCCAAAGCATTTTGTTC+TGG + chr2.3:11468389-11468408 None:intergenic 35.0%
!!! TACTTGGAGGTATTTTTGCA+GGG - chr2.3:11468426-11468445 MS.gene029003:intron 35.0%
AAAGACATCCATTGCCAAGA+AGG + chr2.3:11465403-11465422 None:intergenic 40.0%
AACCAAGAAATTTCCCCAAG+TGG - chr2.3:11465874-11465893 MS.gene029003:intron 40.0%
ACAAACAGTGAGGTAACCAT+TGG + chr2.3:11468104-11468123 None:intergenic 40.0%
ACAGTCTTTCCTATGTGGTT+TGG - chr2.3:11467008-11467027 MS.gene029003:intron 40.0%
ACTGCAAAGTATGGTGATCA+AGG - chr2.3:11468043-11468062 MS.gene029003:intron 40.0%
AGCATCAGAAGGATCCAAAA+CGG - chr2.3:11467402-11467421 MS.gene029003:intron 40.0%
ATATCTCGAATGCGTGAATG+CGG + chr2.3:11468218-11468237 None:intergenic 40.0%
ATCATGCACACAAACAAGAG+AGG - chr2.3:11467566-11467585 MS.gene029003:intron 40.0%
ATCGGGAAGTAAGTAAAGTC+TGG + chr2.3:11465971-11465990 None:intergenic 40.0%
ATCTGCACCCAAAGGTTATA+AGG - chr2.3:11468132-11468151 MS.gene029003:intron 40.0%
ATGTGCTTCTCCTTGTATGT+TGG - chr2.3:11466063-11466082 MS.gene029003:CDS 40.0%
CAAAGTATGGTGATCAAGGT+TGG - chr2.3:11468047-11468066 MS.gene029003:intron 40.0%
CATGAAGCCAGAATTCATTC+AGG - chr2.3:11466523-11466542 MS.gene029003:intron 40.0%
CATGATCCTCATCCTGAAAA+AGG + chr2.3:11467552-11467571 None:intergenic 40.0%
CATGTTCAAGGTGGAATGAT+TGG - chr2.3:11466488-11466507 MS.gene029003:intron 40.0%
GAGCACATAGTTTAGGAACA+TGG - chr2.3:11467698-11467717 MS.gene029003:intron 40.0%
GATACTGGAGCACATAGTTT+AGG - chr2.3:11467691-11467710 MS.gene029003:intron 40.0%
GATAGAGTTCATTGACCACT+TGG + chr2.3:11465892-11465911 None:intergenic 40.0%
GGATTTCTGTCTGAAGATAC+TGG - chr2.3:11467676-11467695 MS.gene029003:intron 40.0%
GGTCCAGAACAAAATGCTTT+GGG - chr2.3:11468383-11468402 MS.gene029003:intron 40.0%
GTATCTTCAGACAGAAATCC+AGG + chr2.3:11467676-11467695 None:intergenic 40.0%
GTGCATTAACCTCTGCTTTA+AGG - chr2.3:11467040-11467059 MS.gene029003:intron 40.0%
TACAGCAATCCATTAGGAGT+TGG + chr2.3:11467812-11467831 None:intergenic 40.0%
TAGAGTTCATTGACCACTTG+GGG + chr2.3:11465890-11465909 None:intergenic 40.0%
TAGCTGACCTGAATGAATTC+TGG + chr2.3:11466533-11466552 None:intergenic 40.0%
TCGCTAAGCTCAATCTATGT+TGG + chr2.3:11465614-11465633 None:intergenic 40.0%
TTAGCAACATCTGGTAAAGG+AGG - chr2.3:11466407-11466426 MS.gene029003:CDS 40.0%
! AAGATCAGCTGAAACCGTTT+TGG + chr2.3:11467419-11467438 None:intergenic 40.0%
! CCTCTTTTCCGAAAAATCGA+TGG - chr2.3:11466011-11466030 MS.gene029003:CDS 40.0%
! CTGCATTTTACGCGATATCA+AGG - chr2.3:11466605-11466624 MS.gene029003:intron 40.0%
! GCAATGGATGTCTTTTCTCT+TGG - chr2.3:11465408-11465427 MS.gene029003:intron 40.0%
! GGAGGACTTGGAACTTTTAT+TGG - chr2.3:11466425-11466444 MS.gene029003:intron 40.0%
! TTGACACTCTCTATTTTCCC+TGG - chr2.3:11467655-11467674 MS.gene029003:intron 40.0%
!! TTGGTGTTGTTTCTACTTGG+AGG - chr2.3:11468413-11468432 MS.gene029003:intron 40.0%
!!! ACCGTTCGGTTTTGATTGAA+CGG - chr2.3:11468271-11468290 MS.gene029003:CDS 40.0%
!!! ACTTGGAGGTATTTTTGCAG+GGG - chr2.3:11468427-11468446 MS.gene029003:intron 40.0%
!!! CCATCGATTTTTCGGAAAAG+AGG + chr2.3:11466014-11466033 None:intergenic 40.0%
!!! CTACTTGGAGGTATTTTTGC+AGG - chr2.3:11468425-11468444 MS.gene029003:intron 40.0%
!!! CTTCTGATGCTGCTTTTGTA+CGG + chr2.3:11467393-11467412 None:intergenic 40.0%
ACATCTGGTAAAGGAGGACT+TGG - chr2.3:11466413-11466432 MS.gene029003:intron 45.0%
ATGAGCATCTGCAACTCCAA+AGG + chr2.3:11466471-11466490 None:intergenic 45.0%
CGTACAAAAGCAGCATCAGA+AGG - chr2.3:11467391-11467410 MS.gene029003:intron 45.0%
GACCACTTGGGGAAATTTCT+TGG + chr2.3:11465879-11465898 None:intergenic 45.0%
GCAAGTGTTCCAACTGCAAA+TGG + chr2.3:11466201-11466220 None:intergenic 45.0%
GCACACAAACAAGAGAGGAA+GGG - chr2.3:11467571-11467590 MS.gene029003:intron 45.0%
GCAGAATTATCATCCCTCCA+GGG - chr2.3:11466155-11466174 MS.gene029003:intron 45.0%
GCATAAACCTCTAGACGTGT+TGG + chr2.3:11465259-11465278 None:intergenic 45.0%
GCCGTTCAATCAAAACCGAA+CGG + chr2.3:11468275-11468294 None:intergenic 45.0%
GGGTCCAGAACAAAATGCTT+TGG - chr2.3:11468382-11468401 MS.gene029003:intron 45.0%
GTATACAAGTGTAAGCACCC+TGG + chr2.3:11466175-11466194 None:intergenic 45.0%
GTATACCAGCCATTTGCAGT+TGG - chr2.3:11466189-11466208 MS.gene029003:intron 45.0%
GTATGCTTCCTTCTTGGCAA+TGG - chr2.3:11465392-11465411 MS.gene029003:intron 45.0%
GTTATGACATCTGCACCCAA+AGG - chr2.3:11468124-11468143 MS.gene029003:intron 45.0%
GTTGCAGATGCTCATGTTCA+AGG - chr2.3:11466476-11466495 MS.gene029003:intron 45.0%
TAAACCTCTAGACGTGTTGG+AGG + chr2.3:11465256-11465275 None:intergenic 45.0%
TATCTCGAATGCGTGAATGC+GGG + chr2.3:11468217-11468236 None:intergenic 45.0%
TCACGCATTCGAGATATCGA+TGG - chr2.3:11468221-11468240 MS.gene029003:intron 45.0%
TCATTCTTGGGGCTATCCAA+TGG - chr2.3:11468085-11468104 MS.gene029003:intron 45.0%
TGCACACAAACAAGAGAGGA+AGG - chr2.3:11467570-11467589 MS.gene029003:intron 45.0%
TGCAGAATTATCATCCCTCC+AGG - chr2.3:11466154-11466173 MS.gene029003:intron 45.0%
TGTGCAATTAGTGGTGCCTT+TGG - chr2.3:11466452-11466471 MS.gene029003:intron 45.0%
! CTAGACTGGTTGTGGTTGAT+AGG - chr2.3:11468455-11468474 MS.gene029003:intron 45.0%
!! TGGTTGTGGTTGATAGGCAA+AGG - chr2.3:11468461-11468480 MS.gene029003:CDS 45.0%
!! TGTGGTTGATAGGCAAAGGT+TGG - chr2.3:11468465-11468484 MS.gene029003:CDS 45.0%
!! GTAATTAAATTATTATAAAT+TGG + chr2.3:11465809-11465828 None:intergenic 5.0%
!!! AATTTGAAATTAAAATAAAA+TGG + chr2.3:11467766-11467785 None:intergenic 5.0%
ACAAGTGTAAGCACCCTGGA+GGG + chr2.3:11466171-11466190 None:intergenic 50.0%
ATCGGATAGTCTGGACCGTT+CGG - chr2.3:11468257-11468276 MS.gene029003:CDS 50.0%
CAGATGCTGCCAAACCACAT+AGG + chr2.3:11467020-11467039 None:intergenic 50.0%
CGACAAGGACCAACTCCTAA+TGG - chr2.3:11467800-11467819 MS.gene029003:intron 50.0%
GCAGATGCTCATGTTCAAGG+TGG - chr2.3:11466479-11466498 MS.gene029003:intron 50.0%
GTGTTCCAACTGCAAATGGC+TGG + chr2.3:11466197-11466216 None:intergenic 50.0%
GTTTCAGCTGATCTTGCAGC+TGG - chr2.3:11467424-11467443 MS.gene029003:CDS 50.0%
TACAAGTGTAAGCACCCTGG+AGG + chr2.3:11466172-11466191 None:intergenic 50.0%
TTGCAGGGGTTACACTAGAC+TGG - chr2.3:11468441-11468460 MS.gene029003:intron 50.0%
! CTATGTGGTTTGGCAGCATC+TGG - chr2.3:11467018-11467037 MS.gene029003:intron 50.0%
! GGGTTACACTAGACTGGTTG+TGG - chr2.3:11468447-11468466 MS.gene029003:intron 50.0%
! TAATTTGGAACCGGCTCCCT+GGG - chr2.3:11468186-11468205 MS.gene029003:intron 50.0%
! TTAATTTGGAACCGGCTCCC+TGG - chr2.3:11468185-11468204 MS.gene029003:intron 50.0%
GTGAATGCGGGAAATCCCCA+GGG + chr2.3:11468205-11468224 None:intergenic 55.0%
TCAGCTGATCTTGCAGCTGG+TGG - chr2.3:11467427-11467446 MS.gene029003:CDS 55.0%
TGAGCCTCCAACACGTCTAG+AGG - chr2.3:11465249-11465268 MS.gene029003:CDS 55.0%
! AATTTGGAACCGGCTCCCTG+GGG - chr2.3:11468187-11468206 MS.gene029003:intron 55.0%
CGTGAATGCGGGAAATCCCC+AGG + chr2.3:11468206-11468225 None:intergenic 60.0%
GCGGGAAATCCCCAGGGAGC+CGG + chr2.3:11468199-11468218 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 11465238 11468490 11465238 ID=MS.gene029003
chr2.3 mRNA 11465238 11468490 11465238 ID=MS.gene029003.t1;Parent=MS.gene029003
chr2.3 exon 11468458 11468490 11468458 ID=MS.gene029003.t1.exon1;Parent=MS.gene029003.t1
chr2.3 CDS 11468458 11468490 11468458 ID=cds.MS.gene029003.t1;Parent=MS.gene029003.t1
chr2.3 exon 11468253 11468357 11468253 ID=MS.gene029003.t1.exon2;Parent=MS.gene029003.t1
chr2.3 CDS 11468253 11468357 11468253 ID=cds.MS.gene029003.t1;Parent=MS.gene029003.t1
chr2.3 exon 11467414 11467569 11467414 ID=MS.gene029003.t1.exon3;Parent=MS.gene029003.t1
chr2.3 CDS 11467414 11467569 11467414 ID=cds.MS.gene029003.t1;Parent=MS.gene029003.t1
chr2.3 exon 11467184 11467327 11467184 ID=MS.gene029003.t1.exon4;Parent=MS.gene029003.t1
chr2.3 CDS 11467184 11467327 11467184 ID=cds.MS.gene029003.t1;Parent=MS.gene029003.t1
chr2.3 exon 11466611 11466716 11466611 ID=MS.gene029003.t1.exon5;Parent=MS.gene029003.t1
chr2.3 CDS 11466611 11466716 11466611 ID=cds.MS.gene029003.t1;Parent=MS.gene029003.t1
chr2.3 exon 11466257 11466429 11466257 ID=MS.gene029003.t1.exon6;Parent=MS.gene029003.t1
chr2.3 CDS 11466257 11466429 11466257 ID=cds.MS.gene029003.t1;Parent=MS.gene029003.t1
chr2.3 exon 11466009 11466169 11466009 ID=MS.gene029003.t1.exon7;Parent=MS.gene029003.t1
chr2.3 CDS 11466009 11466169 11466009 ID=cds.MS.gene029003.t1;Parent=MS.gene029003.t1
chr2.3 exon 11465575 11465833 11465575 ID=MS.gene029003.t1.exon8;Parent=MS.gene029003.t1
chr2.3 CDS 11465575 11465833 11465575 ID=cds.MS.gene029003.t1;Parent=MS.gene029003.t1
chr2.3 exon 11465238 11465345 11465238 ID=MS.gene029003.t1.exon9;Parent=MS.gene029003.t1
chr2.3 CDS 11465238 11465345 11465238 ID=cds.MS.gene029003.t1;Parent=MS.gene029003.t1
Gene Sequence

>MS.gene029003

ATGGTCAACGTTGAGCCTCCAACACGTCTAGAGGTTTATGCTTAATTGGATCTCTTACTACTTTTATTTGCTTAAGAATGGAAATGGAACTTTTTCTTAATTTCATTTTTTTTCTTGTTATTGGTATTCATAGGGAAAATATGCTGCAATATTGGTATGCTTCCTTCTTGGCAATGGATGTCTTTTCTCTTGGAACAGTATGCTCACAATAGAAGATTACTACATTTACTTGTTTCCGGTATGTAATTTGTGTACTTTAAATGATTTTATTTTTATAAATTTTTTTATAAAAAGATTAATTGCACAAATCTATTTTTTGGTATGTGAAATTAGTTACTTTTGTTAATTTATAATTAAGATTGAGAGGAGTTGACCAACATAGATTGAGCTTAGCGAAAAAAGTTAGATTTTTACAATGTAGCGGATCAATGTTCAAATTCAAATTTGAAGAGCTCATATTTAGTGCTTCAAAATCACCACAAAACCAAAACGTAAAACAAATTGTAGGGAGTAGTTTTTTTGTTCCCCAATGCAGTTTTATATTTATATCTAACACAAAAAAATCAAACCAATTTATAATAATTTAATTACAATACTATTATAATATTTTCTTTTGTTTTAAACATATTTCTTAGAAACCAAGAAATTTCCCCAAGTGGTCAATGAACTCTATCTGAGAATGAATAGTTTAGAAGAACCTGAGTTCAATTTCTGGTAGAACAATTATTGACCAGACTTTACTTACTTCCCGATTGAATTCCAGATTATCAAAACCTCTTTTCCGAAAAATCGATGGGTTAACAAAAAAAATTCTTACACTTAGTTATGTGCTTCTCCTTGTATGTTGGTGTAATTTAATGTTGAAAACTAGAATCATCTTGTAAAGAAATAATTCAATTAATTAATTTTTCTCATGTGCAGAATTATCATCCCTCCAGGGTGCTTACACTTGTATACCAGCCATTTGCAGTTGGAACACTTGCTATATTGTCTTATAATGAGGCAAAAGTCAATACTAGATTAAGGAACCTGTTTGGATATACTCTTTTTTTCATAACCACTTTTTTGGTGTTAATAGTAAGTCCTTTATCTATTCAACTAATTGTGAACTTTGATTCCTTTACCTTTAGGATGATTTTGATTTTCCAATAAATTTAATGTAGTTGGATTTAGCAACATCTGGTAAAGGAGGACTTGGAACTTTTATTGGTATATGTGCAATTAGTGGTGCCTTTGGAGTTGCAGATGCTCATGTTCAAGGTGGAATGATTGGAGACTTGTCCTACATGAAGCCAGAATTCATTCAGGTCAGCTATACCGATTATAGTTCTAAATTGCCATTCATAATTGCAATTGTGTTACAACAGCTGCATTTTACGCGATATCAAGGTTTGCAGCGCAATTGTAAGTTGTAACCATAATTTCGTTTATGTTTGATTCTATCTTTGGATTTAGTCAAACGTGATTTGACCATAAATTGTTATGTTTGGTTTTTGACTTTATGATTGAATTTAGACTCAATATCAATTTTACCTAAAAAGCTAATAATTTTAATTTCTATGGTGGCGTGATTCAATTCCGACAGATGTATGGATACAAAAACAATTATGATCTAAACTATCCTAACATAAATCGATAAAAATCATATTTATGTGAATGTATTTTAACATTAATCATTTTACGTTCAATTAATTCAGGCAAAATCAAATTGTCACCGCATAATCAAACTCACTCTTATCTATGATACTTACATCTATGGTTTTTAATGTTACAGTCTTTCCTATGTGGTTTGGCAGCATCTGGTGCATTAACCTCTGCTTTAAGGTTAATTACAAAAGCAGCATTTGATAATTCTAAGGATGGTCTTAGAAAAGGAGCTAGTAAGTTCAACTTTTCTTTTTCTATTGTTACAGACACCATAATCAAAATTTCATCTAATTCATTTAGATTCTGTGATGATGTTCCAATTCTTATTTGTTGCTATTGAAATATTCGTGATATAATCATGACCATTACTCTATATACTATTTAGTTGCTAATATATATACTTTTTCATTGCAGTTCTATTCTTTGCCATATCAACATTCTTTGAGCTTCTATGTGTTCTTCTCTATGCATTTGTTTTTCCTAAAATACCAATTGTGAAATACTACCGTACAAAAGCAGCATCAGAAGGATCCAAAACGGTTTCAGCTGATCTTGCAGCTGGTGGCATCCAAACAATACCTAAAGAAGTACTATTTCTTTCTTCTGTTTTAGTTTCAAACTTTCTCATTGTTTATGACTCACCTTATAATGTGATAATAATTTTCCTTTTTCAGGATGAGGATCATGCACACAAACAAGAGAGGAAGGGAAACAAAGAATTGTTTTTTGAAAACATTGATTATTTACTTGATATGTTCCTAATTTATGCATTGACACTCTCTATTTTCCCTGGATTTCTGTCTGAAGATACTGGAGCACATAGTTTAGGAACATGGTATGTTCATTGCTACCTGCCTTTTAAATCTTTGGTAATTTTGCCATTTTATTTTAATTTCAAATTTTTACGAATCGAAACGACAAGGACCAACTCCTAATGGATTGCTGTAGATAAAGATGTGTATTCTGTAGTTATATGTATCATTGAGAAAGTTGTGCTTATAATTTTTTAGGTATGCTCTTGTGTTAATTGCAATGTACAATGTGTGGGATCTAATAGGAAGATACATCCCACTCTTGAAATTCTTGAAATTGGAGTCAAGAAAGATGATCACAGTAGCAATACTATGTCGCTTCGTACTTGTTCCAGCATTTTATTTCACTGCAAAGTATGGTGATCAAGGTTGGATGATAATGTTGACATCATTCTTGGGGCTATCCAATGGTTACCTCACTGTTTGTGTTATGACATCTGCACCCAAAGGTTATAAGGTAAGACCTTGAGAGTATATTATAGTAGTGTTTAATTTGGAACCGGCTCCCTGGGGATTTCCCGCATTCACGCATTCGAGATATCGATGGCTGTTTGATCAAAATCGGATAGTCTGGACCGTTCGGTTTTGATTGAACGGCCACCAATATCCTTAAAGCATAAATACCAGATCCCTATACTATATGAAATCCAAATTCACATTAATATTTATGTTTTAATTTATTGTAGGGTCCAGAACAAAATGCTTTGGGAAACTTGTTGGTGTTGTTTCTACTTGGAGGTATTTTTGCAGGGGTTACACTAGACTGGTTGTGGTTGATAGGCAAAGGTTGGTGA

Protein sequence

>MS.gene029003.t1

MVNVEPPTRLEGKYAAILVCFLLGNGCLFSWNSMLTIEDYYIYLFPNYHPSRVLTLVYQPFAVGTLAILSYNEAKVNTRLRNLFGYTLFFITTFLVLILDLATSGKGGLGTFIGICAISGAFGVADAHVQGGMIGDLSYMKPEFIQSFLCGLAASGALTSALRLITKAAFDNSKDGLRKGAILFFAISTFFELLCVLLYAFVFPKIPIVKYYRTKAASEGSKTVSADLAAGGIQTIPKEDEDHAHKQERKGNKELFFENIDYLLDMFLIYALTLSIFPGFLSEDTGAHSLGTWYALVLIAMYNVWDLIGRYIPLLKFLKLESRKMITVAILCRFVLVPAFYFTAKYGDQGWMIMLTSFLGLSNGYLTVCVMTSAPKGYKGPEQNALGNLLVLFLLGGIFAGVTLDWLWLIGKGW