Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046073.t1 | KEH17552.1 | 97.3 | 414 | 11 | 0 | 1 | 414 | 1 | 414 | 2.30E-228 | 801.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046073.t1 | Q9M0Y3 | 67.8 | 410 | 131 | 1 | 3 | 412 | 6 | 414 | 7.8e-161 | 568.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046073.t1 | A0A072TJE0 | 97.3 | 414 | 11 | 0 | 1 | 414 | 1 | 414 | 1.6e-228 | 801.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene45316 | MS.gene046073 | PPI |
| MS.gene064218 | MS.gene046073 | PPI |
| MS.gene51411 | MS.gene046073 | PPI |
| MS.gene31551 | MS.gene046073 | PPI |
| MS.gene064214 | MS.gene046073 | PPI |
| MS.gene046073 | MS.gene51414 | PPI |
| MS.gene35750 | MS.gene046073 | PPI |
| MS.gene046073 | MS.gene043342 | PPI |
| MS.gene064217 | MS.gene046073 | PPI |
| MS.gene51416 | MS.gene046073 | PPI |
| MS.gene046074 | MS.gene046073 | PPI |
| MS.gene046073 | MS.gene45320 | PPI |
| MS.gene046073 | MS.gene029003 | PPI |
| MS.gene046071 | MS.gene046073 | PPI |
| MS.gene45318 | MS.gene046073 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046073.t1 | MTR_0008s0130 | 97.343 | 414 | 11 | 0 | 1 | 414 | 1 | 414 | 0.0 | 819 |
| MS.gene046073.t1 | MTR_0008s0170 | 82.367 | 414 | 73 | 0 | 1 | 414 | 1 | 414 | 0.0 | 707 |
| MS.gene046073.t1 | MTR_4g050990 | 75.845 | 414 | 100 | 0 | 1 | 414 | 1 | 414 | 0.0 | 636 |
| MS.gene046073.t1 | MTR_2g089520 | 75.845 | 414 | 100 | 0 | 1 | 414 | 1 | 414 | 0.0 | 636 |
| MS.gene046073.t1 | MTR_1g071120 | 91.691 | 349 | 20 | 3 | 11 | 358 | 53 | 393 | 0.0 | 630 |
| MS.gene046073.t1 | MTR_2g047968 | 75.366 | 410 | 101 | 0 | 1 | 410 | 1 | 410 | 0.0 | 612 |
| MS.gene046073.t1 | MTR_2g011600 | 64.706 | 408 | 142 | 1 | 7 | 412 | 14 | 421 | 0.0 | 540 |
| MS.gene046073.t1 | MTR_2g011580 | 66.842 | 380 | 125 | 1 | 34 | 412 | 1 | 380 | 0.0 | 528 |
| MS.gene046073.t1 | MTR_2g011600 | 63.912 | 363 | 129 | 1 | 52 | 412 | 8 | 370 | 2.76e-168 | 476 |
| MS.gene046073.t1 | MTR_8g007285 | 55.342 | 365 | 157 | 2 | 52 | 412 | 2 | 364 | 2.34e-131 | 382 |
| MS.gene046073.t1 | MTR_0003s0470 | 33.414 | 413 | 239 | 11 | 11 | 410 | 26 | 415 | 8.57e-57 | 192 |
| MS.gene046073.t1 | MTR_3g462280 | 32.000 | 400 | 237 | 9 | 23 | 410 | 47 | 423 | 2.40e-48 | 170 |
| MS.gene046073.t1 | MTR_4g114710 | 28.037 | 428 | 255 | 9 | 1 | 410 | 6 | 398 | 7.35e-42 | 152 |
| MS.gene046073.t1 | MTR_2g011540 | 49.630 | 135 | 61 | 1 | 52 | 179 | 2 | 136 | 1.15e-35 | 128 |
| MS.gene046073.t1 | MTR_2g011530 | 61.957 | 92 | 34 | 1 | 278 | 368 | 2 | 93 | 3.29e-33 | 120 |
| MS.gene046073.t1 | MTR_2g011560 | 58.730 | 63 | 26 | 0 | 177 | 239 | 17 | 79 | 2.42e-16 | 75.5 |
| MS.gene046073.t1 | MTR_2g011570 | 66.667 | 45 | 15 | 0 | 137 | 181 | 1 | 45 | 2.20e-12 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046073.t1 | AT4G05120 | 68.049 | 410 | 130 | 1 | 3 | 412 | 6 | 414 | 0.0 | 584 |
| MS.gene046073.t1 | AT4G05120 | 68.049 | 410 | 130 | 1 | 3 | 412 | 6 | 414 | 0.0 | 584 |
| MS.gene046073.t1 | AT4G05110 | 64.878 | 410 | 143 | 1 | 3 | 412 | 6 | 414 | 0.0 | 556 |
| MS.gene046073.t1 | AT4G05110 | 64.878 | 410 | 143 | 1 | 3 | 412 | 6 | 414 | 0.0 | 556 |
| MS.gene046073.t1 | AT4G05110 | 64.634 | 410 | 144 | 1 | 3 | 412 | 6 | 414 | 0.0 | 555 |
| MS.gene046073.t1 | AT4G05140 | 63.415 | 410 | 150 | 0 | 3 | 412 | 6 | 415 | 0.0 | 542 |
| MS.gene046073.t1 | AT4G05130 | 61.483 | 418 | 155 | 3 | 1 | 414 | 1 | 416 | 0.0 | 531 |
| MS.gene046073.t1 | AT3G09990 | 61.235 | 405 | 156 | 1 | 11 | 414 | 13 | 417 | 0.0 | 517 |
| MS.gene046073.t1 | AT1G61630 | 58.780 | 410 | 168 | 1 | 4 | 412 | 5 | 414 | 6.60e-177 | 500 |
| MS.gene046073.t1 | AT1G70330 | 30.392 | 408 | 250 | 8 | 16 | 410 | 64 | 450 | 7.24e-55 | 188 |
| MS.gene046073.t1 | AT1G02630 | 27.681 | 401 | 255 | 7 | 15 | 410 | 19 | 389 | 4.56e-41 | 150 |
| MS.gene046073.t1 | AT1G02630 | 27.778 | 198 | 141 | 2 | 16 | 212 | 20 | 216 | 5.35e-21 | 94.0 |
Find 96 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAATGTTGACATCTTTCTT+AGG | 0.207250 | 4.4:+56861366 | MS.gene046073:CDS |
| TTACTATCTTATCCTGTTTC+CGG | 0.218792 | 4.4:+56859156 | MS.gene046073:CDS |
| TACTTCACAATTGGTAATTT+AGG | 0.225152 | 4.4:-56860322 | None:intergenic |
| AAGGAAACAAGCAATTATTA+TGG | 0.260497 | 4.4:+56860549 | MS.gene046073:CDS |
| AGCAATATTTGAAAATTCTA+AGG | 0.295643 | 4.4:+56860024 | MS.gene046073:CDS |
| CATGAAATCTGGATGCATTA+AGG | 0.296180 | 4.4:-56859850 | None:intergenic |
| CTCAAATTGCTTTGATTCTC+CGG | 0.323862 | 4.4:-56860522 | None:intergenic |
| GGAAGCGGTGATCCACTTTC+TGG | 0.325958 | 4.4:-56861274 | None:intergenic |
| ACAAGGAAGCGAAATCTATC+TGG | 0.343599 | 4.4:+56859581 | MS.gene046073:CDS |
| TTCTTCACCTTATAGCCTTT+AGG | 0.351038 | 4.4:-56861432 | None:intergenic |
| TTGCTGCAATGTTGGTTTGC+TGG | 0.356438 | 4.4:+56859080 | MS.gene046073:CDS |
| TTCTGCACCTAAAGGCTATA+AGG | 0.356805 | 4.4:+56861425 | MS.gene046073:CDS |
| ATGCTGACCTGCATGAAATC+TGG | 0.362551 | 4.4:-56859861 | None:intergenic |
| TGAGCCTCCACCACGTCTTC+AGG | 0.370397 | 4.4:+56858953 | MS.gene046073:CDS |
| AAGTTCAAATAGTATTGATA+TGG | 0.371207 | 4.4:-56860269 | None:intergenic |
| TTTGCTGGATTCTTGGCAAT+GGG | 0.371217 | 4.4:+56859095 | MS.gene046073:CDS |
| GTTTGCTGGATTCTTGGCAA+TGG | 0.381323 | 4.4:+56859094 | MS.gene046073:CDS |
| ATGTTGGTTTGCTGGATTCT+TGG | 0.385441 | 4.4:+56859088 | MS.gene046073:CDS |
| GGAGGGCTTGGAACTTTCAT+TGG | 0.385609 | 4.4:+56859756 | MS.gene046073:CDS |
| GTGTAACAGCTGATTGGTTA+TGG | 0.389983 | 4.4:+56861607 | MS.gene046073:CDS |
| GTATACCAACCATTTGCTTT+CGG | 0.391006 | 4.4:+56859518 | MS.gene046073:CDS |
| GAACGATAGTACTTCACAAT+TGG | 0.401062 | 4.4:-56860331 | None:intergenic |
| ATCTTGGTGTTGTTCATCCT+TGG | 0.401749 | 4.4:+56861570 | MS.gene046073:CDS |
| ATAGATAAATTACCGGAAAC+AGG | 0.402606 | 4.4:-56859168 | None:intergenic |
| CTTGCAGGTGAAGCAGCCTC+AGG | 0.408659 | 4.4:+56859968 | MS.gene046073:CDS |
| ATGCTGGTATAAGTACAAAT+CGG | 0.414479 | 4.4:-56861305 | None:intergenic |
| AGGAAACAAGCAATTATTAT+GGG | 0.418462 | 4.4:+56860550 | MS.gene046073:CDS |
| TAGTTGGATTTAGCATCATC+TGG | 0.418817 | 4.4:+56859729 | MS.gene046073:intron |
| TAATGTTGACATCTTTCTTA+GGG | 0.423378 | 4.4:+56861367 | MS.gene046073:CDS |
| AAATGCCTTGGGAAATATCT+TGG | 0.429155 | 4.4:+56861554 | MS.gene046073:CDS |
| TTGGTGTTGTTCATCCTTGG+AGG | 0.430268 | 4.4:+56861573 | MS.gene046073:CDS |
| TCATCTGGAAAAGGAGGGCT+TGG | 0.431588 | 4.4:+56859744 | MS.gene046073:CDS |
| GGGAAAATTTGCTGCAATGT+TGG | 0.439962 | 4.4:+56859072 | MS.gene046073:intron |
| CTTGCACAAGGAGGTATGAT+TGG | 0.441599 | 4.4:+56859819 | MS.gene046073:CDS |
| GTACTTCTCCAAGTGAGGTC+TGG | 0.443118 | 4.4:-56860411 | None:intergenic |
| ACTTTCTGGACTCCATGTTC+AGG | 0.448514 | 4.4:-56861260 | None:intergenic |
| GCTGATTGGTTATGGTTGAT+TGG | 0.450606 | 4.4:+56861615 | MS.gene046073:CDS |
| GCCATTGTTCCGAAAGCAAA+TGG | 0.464270 | 4.4:-56859527 | None:intergenic |
| TTGCAGGTGTAACAGCTGAT+TGG | 0.468133 | 4.4:+56861601 | MS.gene046073:CDS |
| TGCTGGTATAAGTACAAATC+GGG | 0.473081 | 4.4:-56861304 | None:intergenic |
| GATTTAGCATCATCTGGAAA+AGG | 0.491285 | 4.4:+56859735 | MS.gene046073:CDS |
| TGGTTATGGTTGATTGGTAA+AGG | 0.499517 | 4.4:+56861621 | MS.gene046073:CDS |
| TGCAGAATTATCATCCCTCT+AGG | 0.499664 | 4.4:+56859483 | MS.gene046073:intron |
| GGGACCTGAACAAAATGCCT+TGG | 0.504290 | 4.4:+56861542 | MS.gene046073:intron |
| GCAGCTGATCTTGCTGCAGT+TGG | 0.514654 | 4.4:+56860385 | MS.gene046073:CDS |
| GGACCTGAACAAAATGCCTT+GGG | 0.523863 | 4.4:+56861543 | MS.gene046073:CDS |
| TATAATGCGTGGGATCTTGT+CGG | 0.529109 | 4.4:+56861213 | MS.gene046073:CDS |
| ACCATTTGCTTTCGGAACAA+TGG | 0.532435 | 4.4:+56859526 | MS.gene046073:CDS |
| GTTCTCACTTCTGCACCTAA+AGG | 0.535854 | 4.4:+56861417 | MS.gene046073:CDS |
| CAGGGTATATAGCTAATGTC+AGG | 0.540396 | 4.4:-56860613 | None:intergenic |
| CAAAGTATGGTACTCAAGGT+TGG | 0.542078 | 4.4:+56861340 | MS.gene046073:CDS |
| GTTGGCATCCAGACCTCACT+TGG | 0.543828 | 4.4:+56860403 | MS.gene046073:CDS |
| CGTTCAAAAGCGGCATCCGA+AGG | 0.548429 | 4.4:+56860349 | MS.gene046073:CDS |
| CAATCATACCTCCTTGTGCA+AGG | 0.549346 | 4.4:-56859818 | None:intergenic |
| TTTGCAGTGAAATAAAATGC+TGG | 0.556803 | 4.4:-56861321 | None:intergenic |
| AAGATCCCACGCATTATACA+TGG | 0.556846 | 4.4:-56861208 | None:intergenic |
| TGGAGGCTCACTGTCAGCCA+TGG | 0.557843 | 4.4:-56858940 | None:intergenic |
| AAGTACAAATCGGGCACAGA+CGG | 0.559597 | 4.4:-56861295 | None:intergenic |
| ATATTTGAAAATTCTAAGGA+TGG | 0.560030 | 4.4:+56860028 | MS.gene046073:CDS |
| ATTGGTATATGCATAGTTAG+CGG | 0.560744 | 4.4:+56859774 | MS.gene046073:CDS |
| TGAACATGGAGTCCAGAAAG+TGG | 0.561056 | 4.4:+56861262 | MS.gene046073:CDS |
| TTAGCATCATCTGGAAAAGG+AGG | 0.566396 | 4.4:+56859738 | MS.gene046073:CDS |
| ACTGCAAAGTATGGTACTCA+AGG | 0.567878 | 4.4:+56861336 | MS.gene046073:CDS |
| TATGGTTGATTGGTAAAGGA+TGG | 0.579079 | 4.4:+56861625 | MS.gene046073:CDS |
| ACGAAGCAAAACTCAATACA+AGG | 0.580082 | 4.4:+56859564 | MS.gene046073:CDS |
| TTGCTGGATTCTTGGCAATG+GGG | 0.582941 | 4.4:+56859096 | MS.gene046073:CDS |
| TACAAGAGTAAGCACCCTAG+AGG | 0.583761 | 4.4:-56859498 | None:intergenic |
| ATTACCTGAAGACGTGGTGG+AGG | 0.587707 | 4.4:-56858957 | None:intergenic |
| ATTGATTAAAATCCTGAACA+TGG | 0.588743 | 4.4:+56861248 | MS.gene046073:CDS |
| AAATTGCTTTGATTCTCCGG+TGG | 0.591972 | 4.4:-56860519 | None:intergenic |
| TTGTTCCGAAAGCAAATGGT+TGG | 0.598007 | 4.4:-56859523 | None:intergenic |
| TCTTTCTTAGGGTTAACCAA+TGG | 0.599139 | 4.4:+56861378 | MS.gene046073:CDS |
| TCAAAGCAATTTGAGCGCAA+AGG | 0.603782 | 4.4:+56860530 | MS.gene046073:CDS |
| AAATCGGGCACAGACGGAAG+CGG | 0.605831 | 4.4:-56861289 | None:intergenic |
| ACAGACAGTGAGGTAGCCAT+TGG | 0.606633 | 4.4:-56861394 | None:intergenic |
| GAAAACACAGTCTAGGCACC+TGG | 0.609266 | 4.4:+56860657 | MS.gene046073:CDS |
| ATAGCAGATGCCCTTGCACA+AGG | 0.613845 | 4.4:+56859807 | MS.gene046073:CDS |
| GCAGAATTATCATCCCTCTA+GGG | 0.615909 | 4.4:+56859484 | MS.gene046073:intron |
| TCTAAGGATGGTCTTCGCAA+AGG | 0.620135 | 4.4:+56860040 | MS.gene046073:CDS |
| AAAGAGTACTTCTCCAAGTG+AGG | 0.620552 | 4.4:-56860416 | None:intergenic |
| AATCATACCTCCTTGTGCAA+GGG | 0.628393 | 4.4:-56859817 | None:intergenic |
| GACACCGGAAAACACAGTCT+AGG | 0.629110 | 4.4:+56860650 | MS.gene046073:CDS |
| AATGCATCCAGATTTCATGC+AGG | 0.629380 | 4.4:+56859854 | MS.gene046073:CDS |
| AACAGATGTTAGTGCACCTG+AGG | 0.631960 | 4.4:-56859984 | None:intergenic |
| TTATATATTACCTGAAGACG+TGG | 0.633165 | 4.4:-56858963 | None:intergenic |
| CTGACATTAGCTATATACCC+TGG | 0.634648 | 4.4:+56860614 | MS.gene046073:CDS |
| TAGCATCATCTGGAAAAGGA+GGG | 0.637573 | 4.4:+56859739 | MS.gene046073:CDS |
| AACATGATTTACAATTAACA+CGG | 0.638715 | 4.4:-56859633 | None:intergenic |
| AATTGCCATGTATAATGCGT+GGG | 0.640595 | 4.4:+56861203 | MS.gene046073:CDS |
| ACAAGAGTAAGCACCCTAGA+GGG | 0.641862 | 4.4:-56859497 | None:intergenic |
| TATATTACCTGAAGACGTGG+TGG | 0.664863 | 4.4:-56858960 | None:intergenic |
| AAGTGAGAACACAGACAGTG+AGG | 0.670493 | 4.4:-56861404 | None:intergenic |
| CAACACCAAGATATTTCCCA+AGG | 0.677439 | 4.4:-56861559 | None:intergenic |
| TAATTGCCATGTATAATGCG+TGG | 0.680651 | 4.4:+56861202 | MS.gene046073:CDS |
| GAAGTACTATCGTTCAAAAG+CGG | 0.681297 | 4.4:+56860339 | MS.gene046073:CDS |
| GCAGATGCCCTTGCACAAGG+AGG | 0.712196 | 4.4:+56859810 | MS.gene046073:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAATTAGTATCTTAA+AGG | - | chr4.4:56861459-56861478 | None:intergenic | 10.0% |
| !!! | ATTTCATCATTTAATTTTTT+TGG | + | chr4.4:56859041-56859060 | MS.gene046073:intron | 10.0% |
| !!! | GTTTTAAAATTAAATGTTTA+TGG | - | chr4.4:56860967-56860986 | None:intergenic | 10.0% |
| !! | ACTAATGAAAGATAAATTTA+AGG | + | chr4.4:56860884-56860903 | MS.gene046073:intron | 15.0% |
| !! | ATTACAAATTATATCAGTAT+AGG | - | chr4.4:56860221-56860240 | None:intergenic | 15.0% |
| !! | CAATATATGCAAAAATTTAA+TGG | + | chr4.4:56859922-56859941 | MS.gene046073:intron | 15.0% |
| !!! | AAGATACTAATTTTTTTTAG+AGG | + | chr4.4:56861461-56861480 | MS.gene046073:intron | 15.0% |
| !!! | TAAATTTTTGCATATATTGA+AGG | - | chr4.4:56859921-56859940 | None:intergenic | 15.0% |
| !!! | TATTTTTTGTTTTGAAAACT+CGG | + | chr4.4:56859272-56859291 | MS.gene046073:intron | 15.0% |
| !! | AACACACAAGTATTAATTAA+TGG | - | chr4.4:56861510-56861529 | None:intergenic | 20.0% |
| !! | AACATGATTTACAATTAACA+CGG | - | chr4.4:56859636-56859655 | None:intergenic | 20.0% |
| !! | AGCAATATTTGAAAATTCTA+AGG | + | chr4.4:56860024-56860043 | MS.gene046073:CDS | 20.0% |
| !!! | AAGTTCAAATAGTATTGATA+TGG | - | chr4.4:56860272-56860291 | None:intergenic | 20.0% |
| !!! | ATATTTGAAAATTCTAAGGA+TGG | + | chr4.4:56860028-56860047 | MS.gene046073:CDS | 20.0% |
| !!! | GAGTTTTCAAAACAAAAAAT+AGG | - | chr4.4:56859273-56859292 | None:intergenic | 20.0% |
| !!! | TCATTTAATTTTTTTGGCAT+TGG | + | chr4.4:56859047-56859066 | MS.gene046073:intron | 20.0% |
| !!! | TCTTTCGTTAGTAATTTTTT+TGG | + | chr4.4:56860820-56860839 | MS.gene046073:intron | 20.0% |
| !!! | TGTTTAGTGTTTTAATACTA+CGG | - | chr4.4:56861085-56861104 | None:intergenic | 20.0% |
| ! | AACATAAATGCATATTCTAG+AGG | - | chr4.4:56859681-56859700 | None:intergenic | 25.0% |
| ! | AAGGAAACAAGCAATTATTA+TGG | + | chr4.4:56860549-56860568 | MS.gene046073:CDS | 25.0% |
| ! | AGGAAACAAGCAATTATTAT+GGG | + | chr4.4:56860550-56860569 | MS.gene046073:CDS | 25.0% |
| ! | ATAATGTTGACATCTTTCTT+AGG | + | chr4.4:56861366-56861385 | MS.gene046073:CDS | 25.0% |
| ! | ATCAACAACATGATTATTCT+TGG | + | chr4.4:56860687-56860706 | MS.gene046073:intron | 25.0% |
| ! | ATTGATTAAAATCCTGAACA+TGG | + | chr4.4:56861248-56861267 | MS.gene046073:CDS | 25.0% |
| ! | CGTAATCATCAATATCTTAA+TGG | - | chr4.4:56860183-56860202 | None:intergenic | 25.0% |
| ! | TAAACTGAAACTCAAAAGTT+AGG | - | chr4.4:56860470-56860489 | None:intergenic | 25.0% |
| ! | TAATGTTGACATCTTTCTTA+GGG | + | chr4.4:56861367-56861386 | MS.gene046073:CDS | 25.0% |
| ! | TCAGAACTGAAATAATGTAT+CGG | - | chr4.4:56859197-56859216 | None:intergenic | 25.0% |
| ! | TCGGAAAATAGATAAATTAC+CGG | - | chr4.4:56859178-56859197 | None:intergenic | 25.0% |
| !! | CTTTTCTTTTCAGTTTTTCA+TGG | + | chr4.4:56860439-56860458 | MS.gene046073:intron | 25.0% |
| !! | TACTTCACAATTGGTAATTT+AGG | - | chr4.4:56860325-56860344 | None:intergenic | 25.0% |
| !!! | AATCTTTCCATATTTTTTGC+AGG | + | chr4.4:56861166-56861185 | MS.gene046073:intron | 25.0% |
| !!! | ATGTTCAGGATTTTAATCAA+TGG | - | chr4.4:56861249-56861268 | None:intergenic | 25.0% |
| !!! | TGTGTGTTTTTACTTATGTA+GGG | + | chr4.4:56861522-56861541 | MS.gene046073:intron | 25.0% |
| !!! | TTGTGTGTTTTTACTTATGT+AGG | + | chr4.4:56861521-56861540 | MS.gene046073:intron | 25.0% |
| !!! | TTTTATTTCACTGCAAAGTA+TGG | + | chr4.4:56861327-56861346 | MS.gene046073:CDS | 25.0% |
| ACATCTCAAAACAACAAAAG+TGG | + | chr4.4:56861102-56861121 | MS.gene046073:intron | 30.0% | |
| ACTTATTGCATGAATGTGTT+AGG | - | chr4.4:56860932-56860951 | None:intergenic | 30.0% | |
| AGATTAACAAGCTCTTCAAT+TGG | - | chr4.4:56861151-56861170 | None:intergenic | 30.0% | |
| ATAGATAAATTACCGGAAAC+AGG | - | chr4.4:56859171-56859190 | None:intergenic | 30.0% | |
| ATGCTGGTATAAGTACAAAT+CGG | - | chr4.4:56861308-56861327 | None:intergenic | 30.0% | |
| ATTGGTATATGCATAGTTAG+CGG | + | chr4.4:56859774-56859793 | MS.gene046073:CDS | 30.0% | |
| CATCTCAAAACAACAAAAGT+GGG | + | chr4.4:56861103-56861122 | MS.gene046073:intron | 30.0% | |
| GATTAACAAGCTCTTCAATT+GGG | - | chr4.4:56861150-56861169 | None:intergenic | 30.0% | |
| TCCTTATATTAACCCTTCTA+CGG | - | chr4.4:56859305-56859324 | None:intergenic | 30.0% | |
| TGTCTTCTGATAAAAATCCA+GGG | - | chr4.4:56860634-56860653 | None:intergenic | 30.0% | |
| TTACTATCTTATCCTGTTTC+CGG | + | chr4.4:56859156-56859175 | MS.gene046073:CDS | 30.0% | |
| TTATATATTACCTGAAGACG+TGG | - | chr4.4:56858966-56858985 | None:intergenic | 30.0% | |
| TTTGCAGTGAAATAAAATGC+TGG | - | chr4.4:56861324-56861343 | None:intergenic | 30.0% | |
| ! | TGAAGGAAAATTTTGAACCT+TGG | - | chr4.4:56859904-56859923 | None:intergenic | 30.0% |
| !!! | TAATTTTTTTGGCATTGGCA+GGG | + | chr4.4:56859052-56859071 | MS.gene046073:intron | 30.0% |
| !!! | TTAATTTTTTTGGCATTGGC+AGG | + | chr4.4:56859051-56859070 | MS.gene046073:intron | 30.0% |
| AAATGCCTTGGGAAATATCT+TGG | + | chr4.4:56861554-56861573 | MS.gene046073:CDS | 35.0% | |
| AACCTTGGAGTAAATTCTGT+TGG | - | chr4.4:56859889-56859908 | None:intergenic | 35.0% | |
| AATTGCCATGTATAATGCGT+GGG | + | chr4.4:56861203-56861222 | MS.gene046073:CDS | 35.0% | |
| ACGAAGCAAAACTCAATACA+AGG | + | chr4.4:56859564-56859583 | MS.gene046073:CDS | 35.0% | |
| CATGAAATCTGGATGCATTA+AGG | - | chr4.4:56859853-56859872 | None:intergenic | 35.0% | |
| CTCAAATTGCTTTGATTCTC+CGG | - | chr4.4:56860525-56860544 | None:intergenic | 35.0% | |
| GAACGATAGTACTTCACAAT+TGG | - | chr4.4:56860334-56860353 | None:intergenic | 35.0% | |
| GAGCATACCTGCAAAAAATA+TGG | - | chr4.4:56861176-56861195 | None:intergenic | 35.0% | |
| GATGATAATTCTGCACAAAG+AGG | - | chr4.4:56859478-56859497 | None:intergenic | 35.0% | |
| GATGATGCTAAATCCAACTA+CGG | - | chr4.4:56859729-56859748 | None:intergenic | 35.0% | |
| GATTTAGCATCATCTGGAAA+AGG | + | chr4.4:56859735-56859754 | MS.gene046073:CDS | 35.0% | |
| GTATACCAACCATTTGCTTT+CGG | + | chr4.4:56859518-56859537 | MS.gene046073:CDS | 35.0% | |
| GTGTCTTCTGATAAAAATCC+AGG | - | chr4.4:56860635-56860654 | None:intergenic | 35.0% | |
| TAATTCTGCACAAAGAGGAA+AGG | - | chr4.4:56859473-56859492 | None:intergenic | 35.0% | |
| TAATTGCCATGTATAATGCG+TGG | + | chr4.4:56861202-56861221 | MS.gene046073:CDS | 35.0% | |
| TAGTTGGATTTAGCATCATC+TGG | + | chr4.4:56859729-56859748 | MS.gene046073:intron | 35.0% | |
| TATGGTTGATTGGTAAAGGA+TGG | + | chr4.4:56861625-56861644 | MS.gene046073:CDS | 35.0% | |
| TCTTTCTTAGGGTTAACCAA+TGG | + | chr4.4:56861378-56861397 | MS.gene046073:CDS | 35.0% | |
| TGCTGGTATAAGTACAAATC+GGG | - | chr4.4:56861307-56861326 | None:intergenic | 35.0% | |
| TGGAAAAGAACATAACTGCA+TGG | - | chr4.4:56860252-56860271 | None:intergenic | 35.0% | |
| TGGTTATGGTTGATTGGTAA+AGG | + | chr4.4:56861621-56861640 | MS.gene046073:CDS | 35.0% | |
| TTCTTCACCTTATAGCCTTT+AGG | - | chr4.4:56861435-56861454 | None:intergenic | 35.0% | |
| ! | ACTCTTTTTCTTGAGCTCTA+TGG | + | chr4.4:56859610-56859629 | MS.gene046073:CDS | 35.0% |
| ! | ATGTTGTTGATGAACTTACC+AGG | - | chr4.4:56860678-56860697 | None:intergenic | 35.0% |
| ! | GAAGTACTATCGTTCAAAAG+CGG | + | chr4.4:56860339-56860358 | MS.gene046073:CDS | 35.0% |
| ! | GGATTTTTATCAGAAGACAC+CGG | + | chr4.4:56860635-56860654 | MS.gene046073:CDS | 35.0% |
| ! | TTGTATTGAGTTTTGCTTCG+TGG | - | chr4.4:56859565-56859584 | None:intergenic | 35.0% |
| !!! | CTTATGTTTTTTCAGTCCAC+CGG | + | chr4.4:56860503-56860522 | MS.gene046073:intron | 35.0% |
| AAATTGCTTTGATTCTCCGG+TGG | - | chr4.4:56860522-56860541 | None:intergenic | 40.0% | |
| AAGATCCCACGCATTATACA+TGG | - | chr4.4:56861211-56861230 | None:intergenic | 40.0% | |
| AATCATACCTCCTTGTGCAA+GGG | - | chr4.4:56859820-56859839 | None:intergenic | 40.0% | |
| AATGCATCCAGATTTCATGC+AGG | + | chr4.4:56859854-56859873 | MS.gene046073:CDS | 40.0% | |
| ACAAGGAAGCGAAATCTATC+TGG | + | chr4.4:56859581-56859600 | MS.gene046073:CDS | 40.0% | |
| ACCATTTGCTTTCGGAACAA+TGG | + | chr4.4:56859526-56859545 | MS.gene046073:CDS | 40.0% | |
| ACTGCAAAGTATGGTACTCA+AGG | + | chr4.4:56861336-56861355 | MS.gene046073:CDS | 40.0% | |
| CAAAGTATGGTACTCAAGGT+TGG | + | chr4.4:56861340-56861359 | MS.gene046073:CDS | 40.0% | |
| CAACACCAAGATATTTCCCA+AGG | - | chr4.4:56861562-56861581 | None:intergenic | 40.0% | |
| CACCAACAGAATTTACTCCA+AGG | + | chr4.4:56859884-56859903 | MS.gene046073:intron | 40.0% | |
| CAGGGTATATAGCTAATGTC+AGG | - | chr4.4:56860616-56860635 | None:intergenic | 40.0% | |
| CTGACATTAGCTATATACCC+TGG | + | chr4.4:56860614-56860633 | MS.gene046073:CDS | 40.0% | |
| GCAGAATTATCATCCCTCTA+GGG | + | chr4.4:56859484-56859503 | MS.gene046073:intron | 40.0% | |
| GCCGTAGAAGGGTTAATATA+AGG | + | chr4.4:56859301-56859320 | MS.gene046073:intron | 40.0% | |
| GTGAGAAACACAACACTGAA+AGG | - | chr4.4:56859372-56859391 | None:intergenic | 40.0% | |
| TAGCATCATCTGGAAAAGGA+GGG | + | chr4.4:56859739-56859758 | MS.gene046073:CDS | 40.0% | |
| TATAATGCGTGGGATCTTGT+CGG | + | chr4.4:56861213-56861232 | MS.gene046073:CDS | 40.0% | |
| TATATTACCTGAAGACGTGG+TGG | - | chr4.4:56858963-56858982 | None:intergenic | 40.0% | |
| TCAAAGCAATTTGAGCGCAA+AGG | + | chr4.4:56860530-56860549 | MS.gene046073:CDS | 40.0% | |
| TCCAACTACGGCAAGTAAAT+AGG | - | chr4.4:56859717-56859736 | None:intergenic | 40.0% | |
| TCCTATTTACTTGCCGTAGT+TGG | + | chr4.4:56859713-56859732 | MS.gene046073:intron | 40.0% | |
| TGCAGAATTATCATCCCTCT+AGG | + | chr4.4:56859483-56859502 | MS.gene046073:intron | 40.0% | |
| TTAGCATCATCTGGAAAAGG+AGG | + | chr4.4:56859738-56859757 | MS.gene046073:CDS | 40.0% | |
| TTCTGCACCTAAAGGCTATA+AGG | + | chr4.4:56861425-56861444 | MS.gene046073:CDS | 40.0% | |
| TTGTTCCGAAAGCAAATGGT+TGG | - | chr4.4:56859526-56859545 | None:intergenic | 40.0% | |
| TTTGCTGGATTCTTGGCAAT+GGG | + | chr4.4:56859095-56859114 | MS.gene046073:CDS | 40.0% | |
| ! | ACAACACTGAAAGGTGCATA+TGG | - | chr4.4:56859363-56859382 | None:intergenic | 40.0% |
| ! | CAACACTGAAAGGTGCATAT+GGG | - | chr4.4:56859362-56859381 | None:intergenic | 40.0% |
| ! | GCTGATTGGTTATGGTTGAT+TGG | + | chr4.4:56861615-56861634 | MS.gene046073:CDS | 40.0% |
| ! | GTGCACTAACATCTGTTTTG+AGG | + | chr4.4:56859990-56860009 | MS.gene046073:CDS | 40.0% |
| ! | GTGTAACAGCTGATTGGTTA+TGG | + | chr4.4:56861607-56861626 | MS.gene046073:CDS | 40.0% |
| ! | TTGTTGCAGTCTTTTCTTGC+AGG | + | chr4.4:56859953-56859972 | MS.gene046073:intron | 40.0% |
| ! | TTTTGATCCCTAAATGTGCG+TGG | + | chr4.4:56860743-56860762 | MS.gene046073:intron | 40.0% |
| !! | AAAGAGTACTTCTCCAAGTG+AGG | - | chr4.4:56860419-56860438 | None:intergenic | 40.0% |
| !! | ATCTTGGTGTTGTTCATCCT+TGG | + | chr4.4:56861570-56861589 | MS.gene046073:CDS | 40.0% |
| !! | ATGTTGGTTTGCTGGATTCT+TGG | + | chr4.4:56859088-56859107 | MS.gene046073:CDS | 40.0% |
| !! | CGGTGGACTGAAAAAACATA+AGG | - | chr4.4:56860505-56860524 | None:intergenic | 40.0% |
| !! | GGGAAAATTTGCTGCAATGT+TGG | + | chr4.4:56859072-56859091 | MS.gene046073:intron | 40.0% |
| !! | TTTCCCAAGGCATTTTGTTC+AGG | - | chr4.4:56861549-56861568 | None:intergenic | 40.0% |
| !!! | ATCCTTGGAGGTATTTTTGC+AGG | + | chr4.4:56861585-56861604 | MS.gene046073:CDS | 40.0% |
| !!! | TGCGACAGTTTTAGATCCTT+CGG | - | chr4.4:56860368-56860387 | None:intergenic | 40.0% |
| AACAGATGTTAGTGCACCTG+AGG | - | chr4.4:56859987-56860006 | None:intergenic | 45.0% | |
| AAGTACAAATCGGGCACAGA+CGG | - | chr4.4:56861298-56861317 | None:intergenic | 45.0% | |
| AAGTGAGAACACAGACAGTG+AGG | - | chr4.4:56861407-56861426 | None:intergenic | 45.0% | |
| ACAAGAGTAAGCACCCTAGA+GGG | - | chr4.4:56859500-56859519 | None:intergenic | 45.0% | |
| ACTTTCTGGACTCCATGTTC+AGG | - | chr4.4:56861263-56861282 | None:intergenic | 45.0% | |
| ATGCTGACCTGCATGAAATC+TGG | - | chr4.4:56859864-56859883 | None:intergenic | 45.0% | |
| CAATCATACCTCCTTGTGCA+AGG | - | chr4.4:56859821-56859840 | None:intergenic | 45.0% | |
| CACCTGCAAAAATACCTCCA+AGG | - | chr4.4:56861590-56861609 | None:intergenic | 45.0% | |
| GAATCCACCACGCACATTTA+GGG | - | chr4.4:56860753-56860772 | None:intergenic | 45.0% | |
| GCCATTGTTCCGAAAGCAAA+TGG | - | chr4.4:56859530-56859549 | None:intergenic | 45.0% | |
| GGACCTGAACAAAATGCCTT+GGG | + | chr4.4:56861543-56861562 | MS.gene046073:CDS | 45.0% | |
| GTTCTCACTTCTGCACCTAA+AGG | + | chr4.4:56861417-56861436 | MS.gene046073:CDS | 45.0% | |
| TACAAGAGTAAGCACCCTAG+AGG | - | chr4.4:56859501-56859520 | None:intergenic | 45.0% | |
| TCTAAGGATGGTCTTCGCAA+AGG | + | chr4.4:56860040-56860059 | MS.gene046073:CDS | 45.0% | |
| TGAACATGGAGTCCAGAAAG+TGG | + | chr4.4:56861262-56861281 | MS.gene046073:CDS | 45.0% | |
| TGAATCCACCACGCACATTT+AGG | - | chr4.4:56860754-56860773 | None:intergenic | 45.0% | |
| TTGCAGGTGTAACAGCTGAT+TGG | + | chr4.4:56861601-56861620 | MS.gene046073:CDS | 45.0% | |
| TTGCTGGATTCTTGGCAATG+GGG | + | chr4.4:56859096-56859115 | MS.gene046073:CDS | 45.0% | |
| ! | CTTGCACAAGGAGGTATGAT+TGG | + | chr4.4:56859819-56859838 | MS.gene046073:CDS | 45.0% |
| ! | GCAATGGGGTTCTTTTCACT+TGG | + | chr4.4:56859110-56859129 | MS.gene046073:CDS | 45.0% |
| ! | GTTTGCTGGATTCTTGGCAA+TGG | + | chr4.4:56859094-56859113 | MS.gene046073:CDS | 45.0% |
| ! | TGCATAGTTAGCGGCGTTTT+TGG | + | chr4.4:56859783-56859802 | MS.gene046073:CDS | 45.0% |
| !! | TTGCTGCAATGTTGGTTTGC+TGG | + | chr4.4:56859080-56859099 | MS.gene046073:CDS | 45.0% |
| !! | TTGGTGTTGTTCATCCTTGG+AGG | + | chr4.4:56861573-56861592 | MS.gene046073:CDS | 45.0% |
| ACAGACAGTGAGGTAGCCAT+TGG | - | chr4.4:56861397-56861416 | None:intergenic | 50.0% | |
| ACTCGGTATTCAGCCGTAGA+AGG | + | chr4.4:56859289-56859308 | MS.gene046073:intron | 50.0% | |
| ATAGCAGATGCCCTTGCACA+AGG | + | chr4.4:56859807-56859826 | MS.gene046073:CDS | 50.0% | |
| ATTACCTGAAGACGTGGTGG+AGG | - | chr4.4:56858960-56858979 | None:intergenic | 50.0% | |
| CTCGGTATTCAGCCGTAGAA+GGG | + | chr4.4:56859290-56859309 | MS.gene046073:intron | 50.0% | |
| GAAAACACAGTCTAGGCACC+TGG | + | chr4.4:56860657-56860676 | MS.gene046073:CDS | 50.0% | |
| GACACCGGAAAACACAGTCT+AGG | + | chr4.4:56860650-56860669 | MS.gene046073:CDS | 50.0% | |
| GGAGGGCTTGGAACTTTCAT+TGG | + | chr4.4:56859756-56859775 | MS.gene046073:CDS | 50.0% | |
| GGGACCTGAACAAAATGCCT+TGG | + | chr4.4:56861542-56861561 | MS.gene046073:intron | 50.0% | |
| GTACTTCTCCAAGTGAGGTC+TGG | - | chr4.4:56860414-56860433 | None:intergenic | 50.0% | |
| TCATCTGGAAAAGGAGGGCT+TGG | + | chr4.4:56859744-56859763 | MS.gene046073:CDS | 50.0% | |
| TGATCCCTAAATGTGCGTGG+TGG | + | chr4.4:56860746-56860765 | MS.gene046073:intron | 50.0% | |
| ! | GGTGCCTAGACTGTGTTTTC+CGG | - | chr4.4:56860657-56860676 | None:intergenic | 50.0% |
| AAATCGGGCACAGACGGAAG+CGG | - | chr4.4:56861292-56861311 | None:intergenic | 55.0% | |
| CGTTCAAAAGCGGCATCCGA+AGG | + | chr4.4:56860349-56860368 | MS.gene046073:CDS | 55.0% | |
| GCAGCTGATCTTGCTGCAGT+TGG | + | chr4.4:56860385-56860404 | MS.gene046073:CDS | 55.0% | |
| GGAAGCGGTGATCCACTTTC+TGG | - | chr4.4:56861277-56861296 | None:intergenic | 55.0% | |
| GTTGGCATCCAGACCTCACT+TGG | + | chr4.4:56860403-56860422 | MS.gene046073:CDS | 55.0% | |
| CTTGCAGGTGAAGCAGCCTC+AGG | + | chr4.4:56859968-56859987 | MS.gene046073:CDS | 60.0% | |
| GCAGATGCCCTTGCACAAGG+AGG | + | chr4.4:56859810-56859829 | MS.gene046073:CDS | 60.0% | |
| TGAGCCTCCACCACGTCTTC+AGG | + | chr4.4:56858953-56858972 | MS.gene046073:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 56858942 | 56861650 | 56858942 | ID=MS.gene046073 |
| chr4.4 | mRNA | 56858942 | 56861650 | 56858942 | ID=MS.gene046073.t1;Parent=MS.gene046073 |
| chr4.4 | exon | 56858942 | 56858974 | 56858942 | ID=MS.gene046073.t1.exon1;Parent=MS.gene046073.t1 |
| chr4.4 | CDS | 56858942 | 56858974 | 56858942 | ID=cds.MS.gene046073.t1;Parent=MS.gene046073.t1 |
| chr4.4 | exon | 56859073 | 56859177 | 56859073 | ID=MS.gene046073.t1.exon2;Parent=MS.gene046073.t1 |
| chr4.4 | CDS | 56859073 | 56859177 | 56859073 | ID=cds.MS.gene046073.t1;Parent=MS.gene046073.t1 |
| chr4.4 | exon | 56859488 | 56859643 | 56859488 | ID=MS.gene046073.t1.exon3;Parent=MS.gene046073.t1 |
| chr4.4 | CDS | 56859488 | 56859643 | 56859488 | ID=cds.MS.gene046073.t1;Parent=MS.gene046073.t1 |
| chr4.4 | exon | 56859732 | 56859875 | 56859732 | ID=MS.gene046073.t1.exon4;Parent=MS.gene046073.t1 |
| chr4.4 | CDS | 56859732 | 56859875 | 56859732 | ID=cds.MS.gene046073.t1;Parent=MS.gene046073.t1 |
| chr4.4 | exon | 56859962 | 56860067 | 56859962 | ID=MS.gene046073.t1.exon5;Parent=MS.gene046073.t1 |
| chr4.4 | CDS | 56859962 | 56860067 | 56859962 | ID=cds.MS.gene046073.t1;Parent=MS.gene046073.t1 |
| chr4.4 | exon | 56860257 | 56860429 | 56860257 | ID=MS.gene046073.t1.exon6;Parent=MS.gene046073.t1 |
| chr4.4 | CDS | 56860257 | 56860429 | 56860257 | ID=cds.MS.gene046073.t1;Parent=MS.gene046073.t1 |
| chr4.4 | exon | 56860518 | 56860678 | 56860518 | ID=MS.gene046073.t1.exon7;Parent=MS.gene046073.t1 |
| chr4.4 | CDS | 56860518 | 56860678 | 56860518 | ID=cds.MS.gene046073.t1;Parent=MS.gene046073.t1 |
| chr4.4 | exon | 56861188 | 56861446 | 56861188 | ID=MS.gene046073.t1.exon8;Parent=MS.gene046073.t1 |
| chr4.4 | CDS | 56861188 | 56861446 | 56861188 | ID=cds.MS.gene046073.t1;Parent=MS.gene046073.t1 |
| chr4.4 | exon | 56861543 | 56861650 | 56861543 | ID=MS.gene046073.t1.exon9;Parent=MS.gene046073.t1 |
| chr4.4 | CDS | 56861543 | 56861650 | 56861543 | ID=cds.MS.gene046073.t1;Parent=MS.gene046073.t1 |
| Gene Sequence |
| Protein sequence |
