Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51414.t1 | KEH17552.1 | 96.6 | 414 | 14 | 0 | 1 | 414 | 1 | 414 | 6.20E-226 | 793.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51414.t1 | Q9M0Y3 | 68.0 | 410 | 130 | 1 | 3 | 412 | 6 | 414 | 2.4e-162 | 573.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51414.t1 | A0A072TJE0 | 96.6 | 414 | 14 | 0 | 1 | 414 | 1 | 414 | 4.4e-226 | 793.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene064214 | MS.gene51414 | PPI |
| MS.gene35750 | MS.gene51414 | PPI |
| MS.gene064217 | MS.gene51414 | PPI |
| MS.gene51416 | MS.gene51414 | PPI |
| MS.gene046074 | MS.gene51414 | PPI |
| MS.gene046073 | MS.gene51414 | PPI |
| MS.gene046071 | MS.gene51414 | PPI |
| MS.gene45318 | MS.gene51414 | PPI |
| MS.gene45316 | MS.gene51414 | PPI |
| MS.gene064218 | MS.gene51414 | PPI |
| MS.gene043342 | MS.gene51414 | PPI |
| MS.gene51411 | MS.gene51414 | PPI |
| MS.gene45320 | MS.gene51414 | PPI |
| MS.gene029003 | MS.gene51414 | PPI |
| MS.gene31551 | MS.gene51414 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51414.t1 | MTR_0008s0130 | 96.618 | 414 | 14 | 0 | 1 | 414 | 1 | 414 | 0.0 | 812 |
| MS.gene51414.t1 | MTR_0008s0170 | 81.884 | 414 | 75 | 0 | 1 | 414 | 1 | 414 | 0.0 | 706 |
| MS.gene51414.t1 | MTR_4g050990 | 76.329 | 414 | 98 | 0 | 1 | 414 | 1 | 414 | 0.0 | 640 |
| MS.gene51414.t1 | MTR_2g089520 | 76.329 | 414 | 98 | 0 | 1 | 414 | 1 | 414 | 0.0 | 640 |
| MS.gene51414.t1 | MTR_1g071120 | 91.691 | 349 | 20 | 3 | 11 | 358 | 53 | 393 | 0.0 | 631 |
| MS.gene51414.t1 | MTR_2g047968 | 76.098 | 410 | 98 | 0 | 1 | 410 | 1 | 410 | 0.0 | 617 |
| MS.gene51414.t1 | MTR_2g011600 | 64.706 | 408 | 142 | 1 | 7 | 412 | 14 | 421 | 0.0 | 541 |
| MS.gene51414.t1 | MTR_2g011580 | 66.842 | 380 | 125 | 1 | 34 | 412 | 1 | 380 | 0.0 | 528 |
| MS.gene51414.t1 | MTR_2g011600 | 63.912 | 363 | 129 | 1 | 52 | 412 | 8 | 370 | 2.95e-168 | 476 |
| MS.gene51414.t1 | MTR_8g007285 | 55.647 | 363 | 159 | 1 | 52 | 412 | 2 | 364 | 7.38e-132 | 384 |
| MS.gene51414.t1 | MTR_0003s0470 | 33.656 | 413 | 238 | 11 | 11 | 410 | 26 | 415 | 1.47e-58 | 197 |
| MS.gene51414.t1 | MTR_3g462280 | 31.750 | 400 | 238 | 9 | 23 | 410 | 47 | 423 | 7.56e-49 | 171 |
| MS.gene51414.t1 | MTR_4g114710 | 27.804 | 428 | 256 | 9 | 1 | 410 | 6 | 398 | 4.57e-42 | 153 |
| MS.gene51414.t1 | MTR_2g011540 | 49.630 | 135 | 61 | 1 | 52 | 179 | 2 | 136 | 1.10e-35 | 129 |
| MS.gene51414.t1 | MTR_2g011530 | 61.957 | 92 | 34 | 1 | 278 | 368 | 2 | 93 | 3.39e-33 | 120 |
| MS.gene51414.t1 | MTR_2g011560 | 58.730 | 63 | 26 | 0 | 177 | 239 | 17 | 79 | 1.71e-16 | 75.9 |
| MS.gene51414.t1 | MTR_2g011570 | 66.667 | 45 | 15 | 0 | 137 | 181 | 1 | 45 | 2.11e-12 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51414.t1 | AT4G05120 | 68.049 | 410 | 130 | 1 | 3 | 412 | 6 | 414 | 0.0 | 588 |
| MS.gene51414.t1 | AT4G05120 | 68.049 | 410 | 130 | 1 | 3 | 412 | 6 | 414 | 0.0 | 588 |
| MS.gene51414.t1 | AT4G05110 | 64.390 | 410 | 145 | 1 | 3 | 412 | 6 | 414 | 0.0 | 559 |
| MS.gene51414.t1 | AT4G05110 | 64.390 | 410 | 145 | 1 | 3 | 412 | 6 | 414 | 0.0 | 559 |
| MS.gene51414.t1 | AT4G05110 | 64.146 | 410 | 146 | 1 | 3 | 412 | 6 | 414 | 0.0 | 558 |
| MS.gene51414.t1 | AT4G05140 | 63.659 | 410 | 149 | 0 | 3 | 412 | 6 | 415 | 0.0 | 544 |
| MS.gene51414.t1 | AT4G05130 | 60.680 | 412 | 161 | 1 | 3 | 414 | 6 | 416 | 0.0 | 533 |
| MS.gene51414.t1 | AT3G09990 | 61.481 | 405 | 155 | 1 | 11 | 414 | 13 | 417 | 0.0 | 518 |
| MS.gene51414.t1 | AT1G61630 | 59.024 | 410 | 167 | 1 | 4 | 412 | 5 | 414 | 3.08e-176 | 498 |
| MS.gene51414.t1 | AT1G70330 | 30.637 | 408 | 249 | 8 | 16 | 410 | 64 | 450 | 2.38e-55 | 189 |
| MS.gene51414.t1 | AT1G02630 | 27.182 | 401 | 255 | 7 | 16 | 410 | 20 | 389 | 1.73e-41 | 151 |
| MS.gene51414.t1 | AT1G02630 | 27.778 | 198 | 141 | 2 | 16 | 212 | 20 | 216 | 3.71e-21 | 94.4 |
Find 92 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTACTATCTTATTCTGTTTC+CGG | 0.185228 | 4.1:+53270448 | MS.gene51414:CDS |
| ATAATGTTGACATCTTTCTT+AGG | 0.207250 | 4.1:+53273021 | MS.gene51414:CDS |
| GCTGATTGGTTATGGTTAAT+TGG | 0.215263 | 4.1:+53273270 | MS.gene51414:CDS |
| TACTTCACAATTGGTAATTT+AGG | 0.225152 | 4.1:-53271970 | None:intergenic |
| GTATACCAACCATTTGCTTT+TGG | 0.251495 | 4.1:+53271188 | MS.gene51414:CDS |
| AGCAATATTTGAAAATTCTA+AGG | 0.295643 | 4.1:+53271695 | MS.gene51414:CDS |
| CATGAAATCTGGATGCATTA+AGG | 0.296180 | 4.1:-53271520 | None:intergenic |
| CTCAAATTGCTTTGATTCTC+CGG | 0.314278 | 4.1:-53272170 | None:intergenic |
| GGAAGCGGTGATCATCTTTC+TGG | 0.314654 | 4.1:-53272929 | None:intergenic |
| ACAAGGAAGCGGAATCTATC+TGG | 0.339747 | 4.1:+53271251 | MS.gene51414:CDS |
| TCTTTCTGGACTCCATGTTC+AGG | 0.340679 | 4.1:-53272915 | None:intergenic |
| TTCTTCACCTTATAGCCTTT+AGG | 0.351038 | 4.1:-53273087 | None:intergenic |
| TTGCTGCAATGTTGGTTTGC+TGG | 0.356438 | 4.1:+53270372 | MS.gene51414:CDS |
| TTCTGCACCTAAAGGCTATA+AGG | 0.356805 | 4.1:+53273080 | MS.gene51414:CDS |
| GTGTAACAGCTGATTGGTTA+TGG | 0.360918 | 4.1:+53273262 | MS.gene51414:CDS |
| ACGCTGACCTGCATGAAATC+TGG | 0.361704 | 4.1:-53271531 | None:intergenic |
| TGAGCCTCCACCACGTCTTC+AGG | 0.370397 | 4.1:+53270244 | MS.gene51414:CDS |
| AAGGAAATAAGCAGTTGTTA+TGG | 0.373767 | 4.1:+53272197 | MS.gene51414:CDS |
| ATGTTGGTTTGCTGGATTCT+TGG | 0.385441 | 4.1:+53270380 | MS.gene51414:CDS |
| GGAGGGCTTGGAACTTTCAT+TGG | 0.385609 | 4.1:+53271426 | MS.gene51414:CDS |
| TTTGCTGGATTCTTGGCAAC+GGG | 0.401023 | 4.1:+53270387 | MS.gene51414:CDS |
| GAACGATAGTACTTCACAAT+TGG | 0.401062 | 4.1:-53271979 | None:intergenic |
| ATCTTGGTGTTGTTCATCCT+TGG | 0.401749 | 4.1:+53273225 | MS.gene51414:CDS |
| AGGAAATAAGCAGTTGTTAT+GGG | 0.407173 | 4.1:+53272198 | MS.gene51414:CDS |
| CTTGCAGGTGAAGCAGCCTC+AGG | 0.408659 | 4.1:+53271639 | MS.gene51414:CDS |
| AAGTTCAAATAGTATTGATA+TGG | 0.411554 | 4.1:-53271917 | None:intergenic |
| AAATGCATTGGGAAATATCT+TGG | 0.414446 | 4.1:+53273209 | MS.gene51414:CDS |
| ATGCTGGTATAAGTACAAAT+CGG | 0.414479 | 4.1:-53272960 | None:intergenic |
| TAGTTGGATTTAGCATCATC+TGG | 0.418817 | 4.1:+53271399 | MS.gene51414:intron |
| TAATGTTGACATCTTTCTTA+GGG | 0.423378 | 4.1:+53273022 | MS.gene51414:CDS |
| TTGGTGTTGTTCATCCTTGG+AGG | 0.430268 | 4.1:+53273228 | MS.gene51414:CDS |
| TCATCTGGAAAAGGAGGGCT+TGG | 0.431588 | 4.1:+53271414 | MS.gene51414:CDS |
| GCCATTGTTCCAAAAGCAAA+TGG | 0.439292 | 4.1:-53271197 | None:intergenic |
| GGGAAAATTTGCTGCAATGT+TGG | 0.439962 | 4.1:+53270364 | MS.gene51414:intron |
| CTTGCACAAGGAGGAATGAT+TGG | 0.442301 | 4.1:+53271489 | MS.gene51414:CDS |
| ATACTTCTCCAAGTGAGGTC+TGG | 0.445286 | 4.1:-53272059 | None:intergenic |
| TTGCAGGTGTAACAGCTGAT+TGG | 0.468133 | 4.1:+53273256 | MS.gene51414:CDS |
| TGCTGGTATAAGTACAAATC+GGG | 0.473081 | 4.1:-53272959 | None:intergenic |
| GTTTGCTGGATTCTTGGCAA+CGG | 0.481193 | 4.1:+53270386 | MS.gene51414:CDS |
| GATTTAGCATCATCTGGAAA+AGG | 0.491285 | 4.1:+53271405 | MS.gene51414:CDS |
| TGGTTATGGTTAATTGGTAA+AGG | 0.491507 | 4.1:+53273276 | MS.gene51414:CDS |
| TGCAGAATTATCATCCCTCT+AGG | 0.499664 | 4.1:+53271153 | MS.gene51414:intron |
| GATACCGGAAAACACAGTTT+AGG | 0.503492 | 4.1:+53272298 | MS.gene51414:CDS |
| GGACCTGAACAAAATGCATT+GGG | 0.506071 | 4.1:+53273198 | MS.gene51414:CDS |
| GCAGCTGATCTTGCTGCAGT+TGG | 0.514654 | 4.1:+53272033 | MS.gene51414:CDS |
| GGGACCTGAACAAAATGCAT+TGG | 0.516104 | 4.1:+53273197 | MS.gene51414:intron |
| CAATCATTCCTCCTTGTGCA+AGG | 0.525533 | 4.1:-53271488 | None:intergenic |
| TATAATGCATGGGATCTTGT+CGG | 0.534381 | 4.1:+53272868 | MS.gene51414:CDS |
| GTTCTCACTTCTGCACCTAA+AGG | 0.535854 | 4.1:+53273072 | MS.gene51414:CDS |
| CAGGGTATATAGCTAATGTC+AGG | 0.540396 | 4.1:-53272261 | None:intergenic |
| CAAAGTATGGTACTCAAGGT+TGG | 0.542078 | 4.1:+53272995 | MS.gene51414:CDS |
| GTTGGCATCCAGACCTCACT+TGG | 0.543828 | 4.1:+53272051 | MS.gene51414:CDS |
| CGTTCAAAAGCGGCATCAGA+AGG | 0.554037 | 4.1:+53271997 | MS.gene51414:CDS |
| TTTGCAGTGAAATAAAATGC+TGG | 0.556803 | 4.1:-53272976 | None:intergenic |
| AAGTACAAATCGGGCACAGA+CGG | 0.559597 | 4.1:-53272950 | None:intergenic |
| ATATTTGAAAATTCTAAGGA+TGG | 0.560030 | 4.1:+53271699 | MS.gene51414:CDS |
| ATTGGTATATGCATAGTTAG+CGG | 0.560744 | 4.1:+53271444 | MS.gene51414:CDS |
| TTAGCATCATCTGGAAAAGG+AGG | 0.566396 | 4.1:+53271408 | MS.gene51414:CDS |
| ACTGCAAAGTATGGTACTCA+AGG | 0.567878 | 4.1:+53272991 | MS.gene51414:CDS |
| TATGGTTAATTGGTAAAGGA+TGG | 0.576724 | 4.1:+53273280 | MS.gene51414:CDS |
| TACAAGAGTAAGCACCCTAG+AGG | 0.583761 | 4.1:-53271168 | None:intergenic |
| ATTACCTGAAGACGTGGTGG+AGG | 0.587707 | 4.1:-53270248 | None:intergenic |
| ATTGATTAAAATCCTGAACA+TGG | 0.588743 | 4.1:+53272903 | MS.gene51414:CDS |
| CAAAACTCAATACAAGGAAG+CGG | 0.590950 | 4.1:+53271240 | MS.gene51414:CDS |
| TTGTTCCAAAAGCAAATGGT+TGG | 0.591187 | 4.1:-53271193 | None:intergenic |
| ACGAGGCAAAACTCAATACA+AGG | 0.597475 | 4.1:+53271234 | MS.gene51414:CDS |
| TCTTTCTTAGGGTTAACCAA+TGG | 0.599139 | 4.1:+53273033 | MS.gene51414:CDS |
| TCAAAGCAATTTGAGCGCAA+AGG | 0.603782 | 4.1:+53272178 | MS.gene51414:CDS |
| AATCATTCCTCCTTGTGCAA+GGG | 0.604579 | 4.1:-53271487 | None:intergenic |
| AAATCGGGCACAGACGGAAG+CGG | 0.605831 | 4.1:-53272944 | None:intergenic |
| ACAGACAGTGAGGTAGCCAT+TGG | 0.606633 | 4.1:-53273049 | None:intergenic |
| ATAGCAGATGCCCTTGCACA+AGG | 0.613845 | 4.1:+53271477 | MS.gene51414:CDS |
| AATTGCTATGTATAATGCAT+GGG | 0.613961 | 4.1:+53272858 | MS.gene51414:CDS |
| TAATTGCTATGTATAATGCA+TGG | 0.615728 | 4.1:+53272857 | MS.gene51414:CDS |
| GCAGAATTATCATCCCTCTA+GGG | 0.615909 | 4.1:+53271154 | MS.gene51414:intron |
| TCTAAGGATGGTCTTCGCAA+AGG | 0.620135 | 4.1:+53271711 | MS.gene51414:CDS |
| AAACAATACTTCTCCAAGTG+AGG | 0.625275 | 4.1:-53272064 | None:intergenic |
| AATGCATCCAGATTTCATGC+AGG | 0.629380 | 4.1:+53271524 | MS.gene51414:CDS |
| AACAGATGTTAGTGCACCTG+AGG | 0.631960 | 4.1:-53271655 | None:intergenic |
| TTATATATTACCTGAAGACG+TGG | 0.633165 | 4.1:-53270254 | None:intergenic |
| GAAAACACAGTTTAGGCACC+TGG | 0.634136 | 4.1:+53272305 | MS.gene51414:CDS |
| CTGACATTAGCTATATACCC+TGG | 0.634648 | 4.1:+53272262 | MS.gene51414:CDS |
| TAGCATCATCTGGAAAAGGA+GGG | 0.637573 | 4.1:+53271409 | MS.gene51414:CDS |
| AACATGATTTACAATTAACA+CGG | 0.638715 | 4.1:-53271303 | None:intergenic |
| ACAAGAGTAAGCACCCTAGA+GGG | 0.641862 | 4.1:-53271167 | None:intergenic |
| TTGCTGGATTCTTGGCAACG+GGG | 0.647875 | 4.1:+53270388 | MS.gene51414:CDS |
| TGGAGGCTCACTGTCAACCA+TGG | 0.655368 | 4.1:-53270231 | None:intergenic |
| TATATTACCTGAAGACGTGG+TGG | 0.664863 | 4.1:-53270251 | None:intergenic |
| AAGTGAGAACACAGACAGTG+AGG | 0.670493 | 4.1:-53273059 | None:intergenic |
| GAAGTACTATCGTTCAAAAG+CGG | 0.681297 | 4.1:+53271987 | MS.gene51414:CDS |
| GCAGATGCCCTTGCACAAGG+AGG | 0.698443 | 4.1:+53271480 | MS.gene51414:CDS |
| GGCAATACTTGCTTACCACG+AGG | 0.744049 | 4.1:+53271217 | MS.gene51414:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTTTAAAATTAAAAGTTTA+TGG | - | chr4.1:53272587-53272606 | None:intergenic | 10.0% |
| !!! | TTTCATCATTTAATTTTTTT+TGG | + | chr4.1:53270333-53270352 | MS.gene51414:intron | 10.0% |
| !! | TTAAAATTGGATATTAAAAC+TGG | - | chr4.1:53270812-53270831 | None:intergenic | 15.0% |
| !! | TTATTCCTTATAGTTAAAAT+TGG | - | chr4.1:53270825-53270844 | None:intergenic | 15.0% |
| !!! | AATATCCAATTTTAACTATA+AGG | + | chr4.1:53270817-53270836 | MS.gene51414:intron | 15.0% |
| !!! | AATTTATGCAAAATTTTAAC+GGG | + | chr4.1:53271593-53271612 | MS.gene51414:intron | 15.0% |
| !!! | CAATTTATGCAAAATTTTAA+CGG | + | chr4.1:53271592-53271611 | MS.gene51414:intron | 15.0% |
| !!! | GAAAAAAATTAGTTTCTTAA+AGG | - | chr4.1:53273114-53273133 | None:intergenic | 15.0% |
| !!! | TAAAATTTTGCATAAATTGA+AGG | - | chr4.1:53271591-53271610 | None:intergenic | 15.0% |
| !!! | TTTATTTTGTTTTGAAATCT+CGG | + | chr4.1:53270537-53270556 | MS.gene51414:intron | 15.0% |
| !! | AACATGATTTACAATTAACA+CGG | - | chr4.1:53271306-53271325 | None:intergenic | 20.0% |
| !! | AATTTGGTCAAAAAAAACTA+TGG | - | chr4.1:53272713-53272732 | None:intergenic | 20.0% |
| !! | ACTAATGAAAGATACATTTA+AGG | + | chr4.1:53272536-53272555 | MS.gene51414:intron | 20.0% |
| !! | AGCAATATTTGAAAATTCTA+AGG | + | chr4.1:53271695-53271714 | MS.gene51414:CDS | 20.0% |
| !! | CAAAGAATAATTGAAGTTTA+CGG | - | chr4.1:53272340-53272359 | None:intergenic | 20.0% |
| !! | GTCATAAACTTCAATTAAAT+AGG | + | chr4.1:53272369-53272388 | MS.gene51414:intron | 20.0% |
| !! | TAAATAGAAGACATATTTGA+TGG | + | chr4.1:53272505-53272524 | MS.gene51414:intron | 20.0% |
| !! | TCAGAAAATAGATAAATTAC+CGG | - | chr4.1:53270470-53270489 | None:intergenic | 20.0% |
| !! | TTAATTGAAGTTTATGACTA+AGG | - | chr4.1:53272367-53272386 | None:intergenic | 20.0% |
| !!! | AAGAAACTAATTTTTTTCAG+AGG | + | chr4.1:53273116-53273135 | MS.gene51414:intron | 20.0% |
| !!! | AAGTTCAAATAGTATTGATA+TGG | - | chr4.1:53271920-53271939 | None:intergenic | 20.0% |
| !!! | ATATTTGAAAATTCTAAGGA+TGG | + | chr4.1:53271699-53271718 | MS.gene51414:CDS | 20.0% |
| !!! | CATTTAATTTTTTTTGGCAT+TGG | + | chr4.1:53270339-53270358 | MS.gene51414:intron | 20.0% |
| !!! | TGTTTAGTGTTTTAAAACTA+TGG | - | chr4.1:53272740-53272759 | None:intergenic | 20.0% |
| ! | AACACACAAGTATTAATCAA+TGG | - | chr4.1:53273165-53273184 | None:intergenic | 25.0% |
| ! | AACATAAATGCATATTCTAG+AGG | - | chr4.1:53271351-53271370 | None:intergenic | 25.0% |
| ! | AATTGCTATGTATAATGCAT+GGG | + | chr4.1:53272858-53272877 | MS.gene51414:CDS | 25.0% |
| ! | ACATCTATTGTTCTATCTTT+CGG | + | chr4.1:53272457-53272476 | MS.gene51414:intron | 25.0% |
| ! | ATAATGTTGACATCTTTCTT+AGG | + | chr4.1:53273021-53273040 | MS.gene51414:CDS | 25.0% |
| ! | ATTGATTAAAATCCTGAACA+TGG | + | chr4.1:53272903-53272922 | MS.gene51414:CDS | 25.0% |
| ! | TAAACTGAATCTCAAAAGTT+AGG | - | chr4.1:53272118-53272137 | None:intergenic | 25.0% |
| ! | TAATGTTGACATCTTTCTTA+GGG | + | chr4.1:53273022-53273041 | MS.gene51414:CDS | 25.0% |
| ! | TAATTGCTATGTATAATGCA+TGG | + | chr4.1:53272857-53272876 | MS.gene51414:CDS | 25.0% |
| ! | TATCTTCTGATAAAAATCCA+GGG | - | chr4.1:53272282-53272301 | None:intergenic | 25.0% |
| ! | TCTATTTGGTCTGTTAAATT+TGG | + | chr4.1:53271791-53271810 | MS.gene51414:intron | 25.0% |
| ! | TTAAAACTATGGAGTGAATT+TGG | - | chr4.1:53272729-53272748 | None:intergenic | 25.0% |
| ! | TTACTATCTTATTCTGTTTC+CGG | + | chr4.1:53270448-53270467 | MS.gene51414:CDS | 25.0% |
| ! | TTGAAGAAAACAAGATATGA+GGG | - | chr4.1:53271005-53271024 | None:intergenic | 25.0% |
| !! | TACTTCACAATTGGTAATTT+AGG | - | chr4.1:53271973-53271992 | None:intergenic | 25.0% |
| !! | TCACAAATTCAGAAATTTTC+AGG | + | chr4.1:53270685-53270704 | MS.gene51414:intron | 25.0% |
| !!! | AATCTTTCCATATTTTTTGC+AGG | + | chr4.1:53272821-53272840 | MS.gene51414:intron | 25.0% |
| !!! | AGACTACTTTATGTTTTTTC+AGG | + | chr4.1:53272144-53272163 | MS.gene51414:intron | 25.0% |
| !!! | ATGTTCAGGATTTTAATCAA+TGG | - | chr4.1:53272904-53272923 | None:intergenic | 25.0% |
| !!! | CAGTTCATTTTTTGTTCAAA+AGG | - | chr4.1:53270924-53270943 | None:intergenic | 25.0% |
| !!! | TCTTTCGGTAGTAATTTTTT+TGG | + | chr4.1:53272472-53272491 | MS.gene51414:intron | 25.0% |
| !!! | TGTGTGTTTTTACTTATGTA+GGG | + | chr4.1:53273177-53273196 | MS.gene51414:intron | 25.0% |
| !!! | TTGTGTGTTTTTACTTATGT+AGG | + | chr4.1:53273176-53273195 | MS.gene51414:intron | 25.0% |
| !!! | TTTTATTTCACTGCAAAGTA+TGG | + | chr4.1:53272982-53273001 | MS.gene51414:CDS | 25.0% |
| AAATGCATTGGGAAATATCT+TGG | + | chr4.1:53273209-53273228 | MS.gene51414:CDS | 30.0% | |
| AACCTTGTAGTAAATTCCAT+TGG | - | chr4.1:53271559-53271578 | None:intergenic | 30.0% | |
| AAGGAAATAAGCAGTTGTTA+TGG | + | chr4.1:53272197-53272216 | MS.gene51414:CDS | 30.0% | |
| AATATAATGCACCAAAGTCA+AGG | + | chr4.1:53270617-53270636 | MS.gene51414:intron | 30.0% | |
| ACAATACTGAAAGATGCATA+TGG | - | chr4.1:53271029-53271048 | None:intergenic | 30.0% | |
| AGATTAACAAGCTCTTCAAT+TGG | - | chr4.1:53272806-53272825 | None:intergenic | 30.0% | |
| AGGAAATAAGCAGTTGTTAT+GGG | + | chr4.1:53272198-53272217 | MS.gene51414:CDS | 30.0% | |
| ATGCTGGTATAAGTACAAAT+CGG | - | chr4.1:53272963-53272982 | None:intergenic | 30.0% | |
| ATTGGTATATGCATAGTTAG+CGG | + | chr4.1:53271444-53271463 | MS.gene51414:CDS | 30.0% | |
| CAACATTCTAGATTGTTATG+TGG | + | chr4.1:53270733-53270752 | MS.gene51414:intron | 30.0% | |
| CAATACTGAAAGATGCATAT+GGG | - | chr4.1:53271028-53271047 | None:intergenic | 30.0% | |
| CATCTCAAAACAACAAAAGT+AGG | + | chr4.1:53272758-53272777 | MS.gene51414:intron | 30.0% | |
| GATTAACAAGCTCTTCAATT+GGG | - | chr4.1:53272805-53272824 | None:intergenic | 30.0% | |
| GTATCTTCTGATAAAAATCC+AGG | - | chr4.1:53272283-53272302 | None:intergenic | 30.0% | |
| GTTGAAGAAAACAAGATATG+AGG | - | chr4.1:53271006-53271025 | None:intergenic | 30.0% | |
| TATGGTTAATTGGTAAAGGA+TGG | + | chr4.1:53273280-53273299 | MS.gene51414:CDS | 30.0% | |
| TGGTTATGGTTAATTGGTAA+AGG | + | chr4.1:53273276-53273295 | MS.gene51414:CDS | 30.0% | |
| TTATATATTACCTGAAGACG+TGG | - | chr4.1:53270257-53270276 | None:intergenic | 30.0% | |
| TTTGCAGTGAAATAAAATGC+TGG | - | chr4.1:53272979-53272998 | None:intergenic | 30.0% | |
| ! | CACATAACAATCTAGAATGT+TGG | - | chr4.1:53270735-53270754 | None:intergenic | 30.0% |
| ! | CTTTTCTCTTCAGTTTTTCA+TGG | + | chr4.1:53272087-53272106 | MS.gene51414:intron | 30.0% |
| ! | GGATTTTTATCAGAAGATAC+CGG | + | chr4.1:53272283-53272302 | MS.gene51414:CDS | 30.0% |
| !!! | AATTTTTTTTGGCATTGGCA+GGG | + | chr4.1:53270344-53270363 | MS.gene51414:intron | 30.0% |
| !!! | GTGTTGTTTTAGTCTCTATT+TGG | + | chr4.1:53271777-53271796 | MS.gene51414:intron | 30.0% |
| !!! | TAATTTTTTTTGGCATTGGC+AGG | + | chr4.1:53270343-53270362 | MS.gene51414:intron | 30.0% |
| !!! | TTTATGTTTTTTCAGGTCAC+CGG | + | chr4.1:53272151-53272170 | MS.gene51414:intron | 30.0% |
| AAACAATACTTCTCCAAGTG+AGG | - | chr4.1:53272067-53272086 | None:intergenic | 35.0% | |
| AAATTGAACCAAAGAGGACT+TGG | - | chr4.1:53270778-53270797 | None:intergenic | 35.0% | |
| AATGCTTAGCATAGCAGAAT+AGG | + | chr4.1:53271755-53271774 | MS.gene51414:intron | 35.0% | |
| ATAGACACTTCACTACTTCA+GGG | - | chr4.1:53270666-53270685 | None:intergenic | 35.0% | |
| CAAAACTCAATACAAGGAAG+CGG | + | chr4.1:53271240-53271259 | MS.gene51414:CDS | 35.0% | |
| CACCAATGGAATTTACTACA+AGG | + | chr4.1:53271554-53271573 | MS.gene51414:intron | 35.0% | |
| CACTGAAAATTGAACCAAAG+AGG | - | chr4.1:53270784-53270803 | None:intergenic | 35.0% | |
| CATGAAATCTGGATGCATTA+AGG | - | chr4.1:53271523-53271542 | None:intergenic | 35.0% | |
| CTCAAATTGCTTTGATTCTC+CGG | - | chr4.1:53272173-53272192 | None:intergenic | 35.0% | |
| GAACGATAGTACTTCACAAT+TGG | - | chr4.1:53271982-53272001 | None:intergenic | 35.0% | |
| GAGCATACCTGCAAAAAATA+TGG | - | chr4.1:53272831-53272850 | None:intergenic | 35.0% | |
| GATGATAATTCTGCACAAAG+AGG | - | chr4.1:53271148-53271167 | None:intergenic | 35.0% | |
| GATGATGCTAAATCCAACTA+CGG | - | chr4.1:53271399-53271418 | None:intergenic | 35.0% | |
| GATTTAGCATCATCTGGAAA+AGG | + | chr4.1:53271405-53271424 | MS.gene51414:CDS | 35.0% | |
| GGATTAATCCAAGGACTAAT+CGG | + | chr4.1:53270575-53270594 | MS.gene51414:intron | 35.0% | |
| GTTAAAAACCAAGTCCTCTT+TGG | + | chr4.1:53270767-53270786 | MS.gene51414:intron | 35.0% | |
| TAGTTGGATTTAGCATCATC+TGG | + | chr4.1:53271399-53271418 | MS.gene51414:intron | 35.0% | |
| TATAATGCATGGGATCTTGT+CGG | + | chr4.1:53272868-53272887 | MS.gene51414:CDS | 35.0% | |
| TCCTTGGATTAATCCTTCTA+CGG | - | chr4.1:53270570-53270589 | None:intergenic | 35.0% | |
| TCTTTCTTAGGGTTAACCAA+TGG | + | chr4.1:53273033-53273052 | MS.gene51414:CDS | 35.0% | |
| TGCTGGTATAAGTACAAATC+GGG | - | chr4.1:53272962-53272981 | None:intergenic | 35.0% | |
| TTCTGATCCATAAATTTGCG+TGG | + | chr4.1:53272394-53272413 | MS.gene51414:intron | 35.0% | |
| TTCTTCACCTTATAGCCTTT+AGG | - | chr4.1:53273090-53273109 | None:intergenic | 35.0% | |
| TTGTTCCAAAAGCAAATGGT+TGG | - | chr4.1:53271196-53271215 | None:intergenic | 35.0% | |
| TTTGGTCTGTTAAATTTGGC+AGG | + | chr4.1:53271795-53271814 | MS.gene51414:intron | 35.0% | |
| ! | AACATTATCCGATTAGTCCT+TGG | - | chr4.1:53270586-53270605 | None:intergenic | 35.0% |
| ! | ACTCTTTTTCTTGAGCTCTA+TGG | + | chr4.1:53271280-53271299 | MS.gene51414:CDS | 35.0% |
| ! | GAAGTACTATCGTTCAAAAG+CGG | + | chr4.1:53271987-53272006 | MS.gene51414:CDS | 35.0% |
| ! | GCTGATTGGTTATGGTTAAT+TGG | + | chr4.1:53273270-53273289 | MS.gene51414:CDS | 35.0% |
| ! | GTATACCAACCATTTGCTTT+TGG | + | chr4.1:53271188-53271207 | MS.gene51414:CDS | 35.0% |
| ! | TTTCCCAATGCATTTTGTTC+AGG | - | chr4.1:53273204-53273223 | None:intergenic | 35.0% |
| !!! | ACCATTTGCTTTTGGAACAA+TGG | + | chr4.1:53271196-53271215 | MS.gene51414:CDS | 35.0% |
| AATCATTCCTCCTTGTGCAA+GGG | - | chr4.1:53271490-53271509 | None:intergenic | 40.0% | |
| AATGCATCCAGATTTCATGC+AGG | + | chr4.1:53271524-53271543 | MS.gene51414:CDS | 40.0% | |
| ACGAGGCAAAACTCAATACA+AGG | + | chr4.1:53271234-53271253 | MS.gene51414:CDS | 40.0% | |
| ACTGCAAAGTATGGTACTCA+AGG | + | chr4.1:53272991-53273010 | MS.gene51414:CDS | 40.0% | |
| AGTTTACGGATCAACATACC+AGG | - | chr4.1:53272326-53272345 | None:intergenic | 40.0% | |
| ATGCACCAAAGTCAAGGAAT+TGG | + | chr4.1:53270623-53270642 | MS.gene51414:intron | 40.0% | |
| CAAAGTATGGTACTCAAGGT+TGG | + | chr4.1:53272995-53273014 | MS.gene51414:CDS | 40.0% | |
| CAGGGTATATAGCTAATGTC+AGG | - | chr4.1:53272264-53272283 | None:intergenic | 40.0% | |
| CTATGCCAATTCCTTGACTT+TGG | - | chr4.1:53270631-53270650 | None:intergenic | 40.0% | |
| CTGACATTAGCTATATACCC+TGG | + | chr4.1:53272262-53272281 | MS.gene51414:CDS | 40.0% | |
| GAATCCACCACGCAAATTTA+TGG | - | chr4.1:53272404-53272423 | None:intergenic | 40.0% | |
| GATACCGGAAAACACAGTTT+AGG | + | chr4.1:53272298-53272317 | MS.gene51414:CDS | 40.0% | |
| GATAGACACTTCACTACTTC+AGG | - | chr4.1:53270667-53270686 | None:intergenic | 40.0% | |
| GCAGAATTATCATCCCTCTA+GGG | + | chr4.1:53271154-53271173 | MS.gene51414:intron | 40.0% | |
| GCCATTGTTCCAAAAGCAAA+TGG | - | chr4.1:53271200-53271219 | None:intergenic | 40.0% | |
| GGACCTGAACAAAATGCATT+GGG | + | chr4.1:53273198-53273217 | MS.gene51414:CDS | 40.0% | |
| TAGCATCATCTGGAAAAGGA+GGG | + | chr4.1:53271409-53271428 | MS.gene51414:CDS | 40.0% | |
| TATATTACCTGAAGACGTGG+TGG | - | chr4.1:53270254-53270273 | None:intergenic | 40.0% | |
| TCAAAGCAATTTGAGCGCAA+AGG | + | chr4.1:53272178-53272197 | MS.gene51414:CDS | 40.0% | |
| TCCAACTACGGCAAGTAAAT+AGG | - | chr4.1:53271387-53271406 | None:intergenic | 40.0% | |
| TCCTATTTACTTGCCGTAGT+TGG | + | chr4.1:53271383-53271402 | MS.gene51414:intron | 40.0% | |
| TGATCCATAAATTTGCGTGG+TGG | + | chr4.1:53272397-53272416 | MS.gene51414:intron | 40.0% | |
| TGCAGAATTATCATCCCTCT+AGG | + | chr4.1:53271153-53271172 | MS.gene51414:intron | 40.0% | |
| TGGCAAAGAACATAACTGCA+TGG | - | chr4.1:53271900-53271919 | None:intergenic | 40.0% | |
| TTAGCATCATCTGGAAAAGG+AGG | + | chr4.1:53271408-53271427 | MS.gene51414:CDS | 40.0% | |
| TTCTGCACCTAAAGGCTATA+AGG | + | chr4.1:53273080-53273099 | MS.gene51414:CDS | 40.0% | |
| ! | GTGCACTAACATCTGTTTTG+AGG | + | chr4.1:53271661-53271680 | MS.gene51414:CDS | 40.0% |
| ! | GTGTAACAGCTGATTGGTTA+TGG | + | chr4.1:53273262-53273281 | MS.gene51414:CDS | 40.0% |
| ! | TTGTATTGAGTTTTGCCTCG+TGG | - | chr4.1:53271235-53271254 | None:intergenic | 40.0% |
| !! | ATCTTGGTGTTGTTCATCCT+TGG | + | chr4.1:53273225-53273244 | MS.gene51414:CDS | 40.0% |
| !! | ATGTTGGTTTGCTGGATTCT+TGG | + | chr4.1:53270380-53270399 | MS.gene51414:CDS | 40.0% |
| !! | GGGAAAATTTGCTGCAATGT+TGG | + | chr4.1:53270364-53270383 | MS.gene51414:intron | 40.0% |
| !!! | ATCCTTGGAGGTATTTTTGC+AGG | + | chr4.1:53273240-53273259 | MS.gene51414:CDS | 40.0% |
| AACAGATGTTAGTGCACCTG+AGG | - | chr4.1:53271658-53271677 | None:intergenic | 45.0% | |
| AAGTACAAATCGGGCACAGA+CGG | - | chr4.1:53272953-53272972 | None:intergenic | 45.0% | |
| AAGTGAGAACACAGACAGTG+AGG | - | chr4.1:53273062-53273081 | None:intergenic | 45.0% | |
| ACAAGAGTAAGCACCCTAGA+GGG | - | chr4.1:53271170-53271189 | None:intergenic | 45.0% | |
| ACAAGGAAGCGGAATCTATC+TGG | + | chr4.1:53271251-53271270 | MS.gene51414:CDS | 45.0% | |
| ATACTTCTCCAAGTGAGGTC+TGG | - | chr4.1:53272062-53272081 | None:intergenic | 45.0% | |
| CAATCATTCCTCCTTGTGCA+AGG | - | chr4.1:53271491-53271510 | None:intergenic | 45.0% | |
| CACCTGCAAAAATACCTCCA+AGG | - | chr4.1:53273245-53273264 | None:intergenic | 45.0% | |
| CTTGCACAAGGAGGAATGAT+TGG | + | chr4.1:53271489-53271508 | MS.gene51414:CDS | 45.0% | |
| GAAAACACAGTTTAGGCACC+TGG | + | chr4.1:53272305-53272324 | MS.gene51414:CDS | 45.0% | |
| GCCGTAGAAGGATTAATCCA+AGG | + | chr4.1:53270566-53270585 | MS.gene51414:intron | 45.0% | |
| GGGACCTGAACAAAATGCAT+TGG | + | chr4.1:53273197-53273216 | MS.gene51414:intron | 45.0% | |
| GTTCTCACTTCTGCACCTAA+AGG | + | chr4.1:53273072-53273091 | MS.gene51414:CDS | 45.0% | |
| TACAAGAGTAAGCACCCTAG+AGG | - | chr4.1:53271171-53271190 | None:intergenic | 45.0% | |
| TCTAAGGATGGTCTTCGCAA+AGG | + | chr4.1:53271711-53271730 | MS.gene51414:CDS | 45.0% | |
| TCTTTCTGGACTCCATGTTC+AGG | - | chr4.1:53272918-53272937 | None:intergenic | 45.0% | |
| TTGCAGGTGTAACAGCTGAT+TGG | + | chr4.1:53273256-53273275 | MS.gene51414:CDS | 45.0% | |
| TTTGCTGGATTCTTGGCAAC+GGG | + | chr4.1:53270387-53270406 | MS.gene51414:CDS | 45.0% | |
| ! | GGTGCCTAAACTGTGTTTTC+CGG | - | chr4.1:53272305-53272324 | None:intergenic | 45.0% |
| ! | GTTTGCTGGATTCTTGGCAA+CGG | + | chr4.1:53270386-53270405 | MS.gene51414:CDS | 45.0% |
| ! | TCGTTGCAGTCTTTTCTTGC+AGG | + | chr4.1:53271624-53271643 | MS.gene51414:intron | 45.0% |
| ! | TGCATAGTTAGCGGCGTTTT+TGG | + | chr4.1:53271453-53271472 | MS.gene51414:CDS | 45.0% |
| !! | TTGCTGCAATGTTGGTTTGC+TGG | + | chr4.1:53270372-53270391 | MS.gene51414:CDS | 45.0% |
| !! | TTGGTGTTGTTCATCCTTGG+AGG | + | chr4.1:53273228-53273247 | MS.gene51414:CDS | 45.0% |
| ACAGACAGTGAGGTAGCCAT+TGG | - | chr4.1:53273052-53273071 | None:intergenic | 50.0% | |
| ACGCTGACCTGCATGAAATC+TGG | - | chr4.1:53271534-53271553 | None:intergenic | 50.0% | |
| ATAGCAGATGCCCTTGCACA+AGG | + | chr4.1:53271477-53271496 | MS.gene51414:CDS | 50.0% | |
| ATTACCTGAAGACGTGGTGG+AGG | - | chr4.1:53270251-53270270 | None:intergenic | 50.0% | |
| CGTTCAAAAGCGGCATCAGA+AGG | + | chr4.1:53271997-53272016 | MS.gene51414:CDS | 50.0% | |
| GGAAGCGGTGATCATCTTTC+TGG | - | chr4.1:53272932-53272951 | None:intergenic | 50.0% | |
| GGAGGGCTTGGAACTTTCAT+TGG | + | chr4.1:53271426-53271445 | MS.gene51414:CDS | 50.0% | |
| GGCAATACTTGCTTACCACG+AGG | + | chr4.1:53271217-53271236 | MS.gene51414:CDS | 50.0% | |
| TCATCTGGAAAAGGAGGGCT+TGG | + | chr4.1:53271414-53271433 | MS.gene51414:CDS | 50.0% | |
| TCTCGGTAATCAGCCGTAGA+AGG | + | chr4.1:53270554-53270573 | MS.gene51414:intron | 50.0% | |
| TTGCTGGATTCTTGGCAACG+GGG | + | chr4.1:53270388-53270407 | MS.gene51414:CDS | 50.0% | |
| ! | GCAACGGGGTTCTTTTCACT+TGG | + | chr4.1:53270402-53270421 | MS.gene51414:CDS | 50.0% |
| AAATCGGGCACAGACGGAAG+CGG | - | chr4.1:53272947-53272966 | None:intergenic | 55.0% | |
| ATGCAGGTCAGCGTCACCAA+TGG | + | chr4.1:53271540-53271559 | MS.gene51414:intron | 55.0% | |
| GCAGCTGATCTTGCTGCAGT+TGG | + | chr4.1:53272033-53272052 | MS.gene51414:CDS | 55.0% | |
| GTTGGCATCCAGACCTCACT+TGG | + | chr4.1:53272051-53272070 | MS.gene51414:CDS | 55.0% | |
| CTTGCAGGTGAAGCAGCCTC+AGG | + | chr4.1:53271639-53271658 | MS.gene51414:CDS | 60.0% | |
| GCAGATGCCCTTGCACAAGG+AGG | + | chr4.1:53271480-53271499 | MS.gene51414:CDS | 60.0% | |
| TGAGCCTCCACCACGTCTTC+AGG | + | chr4.1:53270244-53270263 | MS.gene51414:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 53270233 | 53273305 | 53270233 | ID=MS.gene51414 |
| chr4.1 | mRNA | 53270233 | 53273305 | 53270233 | ID=MS.gene51414.t1;Parent=MS.gene51414 |
| chr4.1 | exon | 53270233 | 53270265 | 53270233 | ID=MS.gene51414.t1.exon1;Parent=MS.gene51414.t1 |
| chr4.1 | CDS | 53270233 | 53270265 | 53270233 | ID=cds.MS.gene51414.t1;Parent=MS.gene51414.t1 |
| chr4.1 | exon | 53270365 | 53270469 | 53270365 | ID=MS.gene51414.t1.exon2;Parent=MS.gene51414.t1 |
| chr4.1 | CDS | 53270365 | 53270469 | 53270365 | ID=cds.MS.gene51414.t1;Parent=MS.gene51414.t1 |
| chr4.1 | exon | 53271158 | 53271313 | 53271158 | ID=MS.gene51414.t1.exon3;Parent=MS.gene51414.t1 |
| chr4.1 | CDS | 53271158 | 53271313 | 53271158 | ID=cds.MS.gene51414.t1;Parent=MS.gene51414.t1 |
| chr4.1 | exon | 53271402 | 53271545 | 53271402 | ID=MS.gene51414.t1.exon4;Parent=MS.gene51414.t1 |
| chr4.1 | CDS | 53271402 | 53271545 | 53271402 | ID=cds.MS.gene51414.t1;Parent=MS.gene51414.t1 |
| chr4.1 | exon | 53271633 | 53271738 | 53271633 | ID=MS.gene51414.t1.exon5;Parent=MS.gene51414.t1 |
| chr4.1 | CDS | 53271633 | 53271738 | 53271633 | ID=cds.MS.gene51414.t1;Parent=MS.gene51414.t1 |
| chr4.1 | exon | 53271905 | 53272077 | 53271905 | ID=MS.gene51414.t1.exon6;Parent=MS.gene51414.t1 |
| chr4.1 | CDS | 53271905 | 53272077 | 53271905 | ID=cds.MS.gene51414.t1;Parent=MS.gene51414.t1 |
| chr4.1 | exon | 53272166 | 53272326 | 53272166 | ID=MS.gene51414.t1.exon7;Parent=MS.gene51414.t1 |
| chr4.1 | CDS | 53272166 | 53272326 | 53272166 | ID=cds.MS.gene51414.t1;Parent=MS.gene51414.t1 |
| chr4.1 | exon | 53272843 | 53273101 | 53272843 | ID=MS.gene51414.t1.exon8;Parent=MS.gene51414.t1 |
| chr4.1 | CDS | 53272843 | 53273101 | 53272843 | ID=cds.MS.gene51414.t1;Parent=MS.gene51414.t1 |
| chr4.1 | exon | 53273198 | 53273305 | 53273198 | ID=MS.gene51414.t1.exon9;Parent=MS.gene51414.t1 |
| chr4.1 | CDS | 53273198 | 53273305 | 53273198 | ID=cds.MS.gene51414.t1;Parent=MS.gene51414.t1 |
| Gene Sequence |
| Protein sequence |
