Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51416.t1 | XP_024631389.1 | 96.9 | 414 | 13 | 0 | 1 | 414 | 1 | 414 | 1.20E-224 | 788.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51416.t1 | Q9M0Y3 | 67.7 | 409 | 131 | 1 | 4 | 412 | 7 | 414 | 2.9e-155 | 549.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51416.t1 | A0A072V6W8 | 96.8 | 410 | 13 | 0 | 1 | 410 | 1 | 410 | 1.5e-221 | 778.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene35750 | MS.gene51416 | PPI |
| MS.gene51416 | MS.gene043342 | PPI |
| MS.gene51416 | MS.gene064214 | PPI |
| MS.gene064217 | MS.gene51416 | PPI |
| MS.gene51416 | MS.gene046071 | PPI |
| MS.gene51416 | MS.gene51414 | PPI |
| MS.gene51416 | MS.gene31551 | PPI |
| MS.gene046074 | MS.gene51416 | PPI |
| MS.gene51416 | MS.gene45320 | PPI |
| MS.gene51416 | MS.gene029003 | PPI |
| MS.gene51416 | MS.gene45318 | PPI |
| MS.gene45318 | MS.gene51416 | PPI |
| MS.gene51416 | MS.gene064218 | PPI |
| MS.gene51411 | MS.gene51416 | PPI |
| MS.gene51416 | MS.gene046073 | PPI |
| MS.gene51416 | MS.gene51411 | PPI |
| MS.gene51416 | MS.gene45316 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51416.t1 | MTR_2g047968 | 96.829 | 410 | 13 | 0 | 1 | 410 | 1 | 410 | 0.0 | 804 |
| MS.gene51416.t1 | MTR_0008s0170 | 80.779 | 411 | 79 | 0 | 4 | 414 | 4 | 414 | 0.0 | 677 |
| MS.gene51416.t1 | MTR_0008s0130 | 76.829 | 410 | 95 | 0 | 5 | 414 | 5 | 414 | 0.0 | 647 |
| MS.gene51416.t1 | MTR_4g050990 | 77.295 | 414 | 94 | 0 | 1 | 414 | 1 | 414 | 0.0 | 641 |
| MS.gene51416.t1 | MTR_2g089520 | 77.295 | 414 | 94 | 0 | 1 | 414 | 1 | 414 | 0.0 | 641 |
| MS.gene51416.t1 | MTR_2g011600 | 69.853 | 408 | 121 | 1 | 7 | 412 | 14 | 421 | 0.0 | 577 |
| MS.gene51416.t1 | MTR_2g011580 | 67.895 | 380 | 121 | 1 | 34 | 412 | 1 | 380 | 0.0 | 518 |
| MS.gene51416.t1 | MTR_2g011600 | 67.663 | 368 | 117 | 1 | 47 | 412 | 3 | 370 | 1.02e-177 | 500 |
| MS.gene51416.t1 | MTR_1g071120 | 72.206 | 349 | 88 | 3 | 11 | 358 | 53 | 393 | 2.22e-176 | 499 |
| MS.gene51416.t1 | MTR_8g007285 | 58.242 | 364 | 148 | 2 | 52 | 412 | 2 | 364 | 6.06e-135 | 391 |
| MS.gene51416.t1 | MTR_0003s0470 | 33.253 | 415 | 237 | 12 | 11 | 410 | 26 | 415 | 6.28e-56 | 190 |
| MS.gene51416.t1 | MTR_3g462280 | 30.673 | 401 | 241 | 9 | 23 | 410 | 47 | 423 | 5.13e-46 | 164 |
| MS.gene51416.t1 | MTR_4g114710 | 29.040 | 427 | 247 | 14 | 4 | 410 | 8 | 398 | 4.00e-40 | 147 |
| MS.gene51416.t1 | MTR_2g011530 | 68.478 | 92 | 28 | 1 | 278 | 368 | 2 | 93 | 4.00e-36 | 128 |
| MS.gene51416.t1 | MTR_2g011540 | 48.889 | 135 | 62 | 1 | 52 | 179 | 2 | 136 | 5.37e-33 | 121 |
| MS.gene51416.t1 | MTR_2g011560 | 40.132 | 152 | 35 | 3 | 177 | 323 | 17 | 117 | 4.89e-18 | 80.1 |
| MS.gene51416.t1 | MTR_2g011570 | 55.385 | 65 | 22 | 1 | 137 | 201 | 1 | 58 | 4.07e-13 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51416.t1 | AT4G05120 | 67.726 | 409 | 131 | 1 | 4 | 412 | 7 | 414 | 0.0 | 569 |
| MS.gene51416.t1 | AT4G05120 | 67.726 | 409 | 131 | 1 | 4 | 412 | 7 | 414 | 0.0 | 569 |
| MS.gene51416.t1 | AT4G05110 | 64.792 | 409 | 143 | 1 | 4 | 412 | 7 | 414 | 0.0 | 546 |
| MS.gene51416.t1 | AT4G05110 | 64.792 | 409 | 143 | 1 | 4 | 412 | 7 | 414 | 0.0 | 546 |
| MS.gene51416.t1 | AT4G05110 | 64.548 | 409 | 144 | 1 | 4 | 412 | 7 | 414 | 0.0 | 545 |
| MS.gene51416.t1 | AT4G05140 | 63.814 | 409 | 148 | 0 | 4 | 412 | 7 | 415 | 0.0 | 540 |
| MS.gene51416.t1 | AT4G05130 | 62.774 | 411 | 152 | 1 | 4 | 414 | 7 | 416 | 0.0 | 534 |
| MS.gene51416.t1 | AT3G09990 | 62.963 | 405 | 149 | 1 | 11 | 414 | 13 | 417 | 0.0 | 528 |
| MS.gene51416.t1 | AT1G61630 | 60.976 | 410 | 159 | 1 | 4 | 412 | 5 | 414 | 0.0 | 515 |
| MS.gene51416.t1 | AT1G70330 | 29.268 | 410 | 252 | 8 | 16 | 410 | 64 | 450 | 4.35e-51 | 178 |
| MS.gene51416.t1 | AT1G02630 | 29.286 | 420 | 251 | 11 | 1 | 410 | 6 | 389 | 3.02e-46 | 164 |
| MS.gene51416.t1 | AT1G02630 | 28.372 | 215 | 147 | 4 | 1 | 212 | 6 | 216 | 4.84e-24 | 102 |
Find 97 sgRNAs with CRISPR-Local
Find 243 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCGCAGTCTTGTACTGATTT+TGG | 0.152135 | 4.1:-53319757 | None:intergenic |
| GTACTTCACGATTGGTAATT+TGG | 0.154465 | 4.1:-53320547 | None:intergenic |
| GTATATCAGCCATTTATATT+TGG | 0.187219 | 4.1:+53319705 | MS.gene51416:CDS |
| ATATTCTTGACATCATTCTT+AGG | 0.193217 | 4.1:+53321183 | MS.gene51416:CDS |
| TGCATAGTTAGTGGTGTATT+TGG | 0.235166 | 4.1:+53319970 | MS.gene51416:CDS |
| CTTCTTGGAGGTCTATTTGC+AGG | 0.236906 | 4.1:+53321400 | MS.gene51416:CDS |
| CCACCATTCCGCCTTGTATA+TGG | 0.254233 | 4.1:-53320005 | None:intergenic |
| ATTTGGAACACAAGCAATAT+TGG | 0.269430 | 4.1:+53319722 | MS.gene51416:CDS |
| CTTGACTGGCTATGGTTAAT+AGG | 0.280707 | 4.1:+53321430 | MS.gene51416:CDS |
| TTTGCTGGTTTCTTGGCATT+GGG | 0.292449 | 4.1:+53318389 | MS.gene51416:CDS |
| GCTTGTGTTCCAAATATAAA+TGG | 0.295680 | 4.1:-53319714 | None:intergenic |
| CATGCTTCCGGAATTCATTC+AGG | 0.308853 | 4.1:+53320041 | MS.gene51416:CDS |
| ATTTGCTGGTTTCTTGGCAT+TGG | 0.318253 | 4.1:+53318388 | MS.gene51416:CDS |
| TGCAGAAATACCATCCTTCT+AGG | 0.326458 | 4.1:+53319670 | MS.gene51416:intron |
| TACTTCACGATTGGTAATTT+GGG | 0.335339 | 4.1:-53320546 | None:intergenic |
| TTGTTGCAGTCGTTCCTTGC+TGG | 0.335887 | 4.1:+53320135 | MS.gene51416:intron |
| AAGATCAGCTGTAACAGTTT+TGG | 0.342976 | 4.1:-53320598 | None:intergenic |
| TTACTATATTTACTTGTTCC+CGG | 0.355375 | 4.1:+53318450 | MS.gene51416:CDS |
| ACAATGTTAGCACATATATT+AGG | 0.355997 | 4.1:-53320839 | None:intergenic |
| ATGTTGATGCTGTGTCTTCT+TGG | 0.363115 | 4.1:+53321385 | MS.gene51416:CDS |
| ATGGTGATTTGCTGGTTTCT+TGG | 0.368089 | 4.1:+53318382 | MS.gene51416:CDS |
| AGGAATAAAACAATTGTTAT+CGG | 0.393822 | 4.1:+53320788 | MS.gene51416:CDS |
| GGGACCTGAACAAAATGCTT+TGG | 0.400480 | 4.1:+53321357 | MS.gene51416:intron |
| AGACCTATCTTACATGCTTC+CGG | 0.402295 | 4.1:+53320029 | MS.gene51416:CDS |
| GATACTGGATCACACAGTTT+AGG | 0.403544 | 4.1:+53320888 | MS.gene51416:CDS |
| CTTGCTGGTTCAGCAGCGTC+TGG | 0.404416 | 4.1:+53320150 | MS.gene51416:CDS |
| TCACTACAGCAGTAATTTCT+CGG | 0.407068 | 4.1:+53321103 | MS.gene51416:CDS |
| AGACCCACCTTGTAACCTTT+AGG | 0.407785 | 4.1:-53321249 | None:intergenic |
| ATGCAGCAATGGTGATTTGC+TGG | 0.414070 | 4.1:+53318374 | MS.gene51416:CDS |
| ATTGGTATATGCATAGTTAG+TGG | 0.422297 | 4.1:+53319961 | MS.gene51416:CDS |
| CACCATTCCGCCTTGTATAT+GGG | 0.424233 | 4.1:-53320004 | None:intergenic |
| GGCTTCTTATCAGAAGATAC+TGG | 0.428216 | 4.1:+53320873 | MS.gene51416:CDS |
| TATTCTTGACATCATTCTTA+GGG | 0.429143 | 4.1:+53321184 | MS.gene51416:CDS |
| CAAAGTATGGTAAGCAGGGC+TGG | 0.429657 | 4.1:+53321157 | MS.gene51416:CDS |
| GTACTATGCCAGGTGAGGTC+TGG | 0.433470 | 4.1:-53320635 | None:intergenic |
| CATGGAAGATTCAAAACAAC+AGG | 0.436749 | 4.1:+53320758 | MS.gene51416:CDS |
| ACAGCTGATCTTGCTGCAGC+TGG | 0.441389 | 4.1:+53320609 | MS.gene51416:CDS |
| TTCTTGGAGGTCTATTTGCA+GGG | 0.442770 | 4.1:+53321401 | MS.gene51416:CDS |
| GGACCTGAACAAAATGCTTT+GGG | 0.445382 | 4.1:+53321358 | MS.gene51416:CDS |
| GTATCTTCTGATAAGAAGCC+AGG | 0.448844 | 4.1:-53320870 | None:intergenic |
| TAGTTGGATTTAGCAACATC+TGG | 0.449427 | 4.1:+53319916 | MS.gene51416:intron |
| CACCGCAAAGTATGGTAAGC+AGG | 0.454790 | 4.1:+53321152 | MS.gene51416:CDS |
| ATGCTGACCTGAATGAATTC+CGG | 0.460793 | 4.1:-53320048 | None:intergenic |
| ACATCTGGTAAAGGAGAGAT+TGG | 0.463035 | 4.1:+53319931 | MS.gene51416:CDS |
| GCCCTGCTTACCATACTTTG+CGG | 0.464646 | 4.1:-53321154 | None:intergenic |
| ACAATGGTAAGCACCCTAGA+AGG | 0.465663 | 4.1:-53319684 | None:intergenic |
| GCTGGCATCCAGACCTCACC+TGG | 0.481003 | 4.1:+53320627 | MS.gene51416:CDS |
| ACTCGTGAAAATCTTGAAGA+TGG | 0.489152 | 4.1:+53321065 | MS.gene51416:CDS |
| ACAAGACTGCGGAACCTGTT+CGG | 0.491522 | 4.1:+53319768 | MS.gene51416:CDS |
| AAACCACAGTGTATCCGAAC+AGG | 0.499026 | 4.1:-53319782 | None:intergenic |
| TTGATGCTGTGTCTTCTTGG+AGG | 0.504384 | 4.1:+53321388 | MS.gene51416:CDS |
| GCCGCGTTTGAGAATTCTCC+TGG | 0.506870 | 4.1:+53320207 | MS.gene51416:CDS |
| TGCTGGTTTCTTGGCATTGG+GGG | 0.514420 | 4.1:+53318391 | MS.gene51416:CDS |
| TTGCAGGGGTAACACTTGAC+TGG | 0.516302 | 4.1:+53321416 | MS.gene51416:CDS |
| TGGCTATGGTTAATAGGTAA+AGG | 0.519736 | 4.1:+53321436 | MS.gene51416:CDS |
| GAACGGTAGTACTTCACGAT+TGG | 0.520220 | 4.1:-53320555 | None:intergenic |
| TTGCTGGTTTCTTGGCATTG+GGG | 0.520379 | 4.1:+53318390 | MS.gene51416:CDS |
| CTTCGGAGGCTGCTTTCGAA+CGG | 0.527518 | 4.1:-53320572 | None:intergenic |
| TTCTGCACCTAAAGGTTACA+AGG | 0.528109 | 4.1:+53321242 | MS.gene51416:CDS |
| ATTCCGGAAGCATGTAAGAT+AGG | 0.528985 | 4.1:-53320032 | None:intergenic |
| GATTTAGCAACATCTGGTAA+AGG | 0.531613 | 4.1:+53319922 | MS.gene51416:CDS |
| CATATACAAGGCGGAATGGT+GGG | 0.535308 | 4.1:+53320006 | MS.gene51416:CDS |
| GGGTAACACTTGACTGGCTA+TGG | 0.535952 | 4.1:+53321422 | MS.gene51416:CDS |
| CGTTCGAAAGCAGCCTCCGA+AGG | 0.538878 | 4.1:+53320573 | MS.gene51416:CDS |
| AAAAGAAACAGTACTATGCC+AGG | 0.552448 | 4.1:-53320645 | None:intergenic |
| ACAGATAGTGAGGTAACCAT+TGG | 0.553661 | 4.1:-53321211 | None:intergenic |
| TATGGTTAATAGGTAAAGGA+TGG | 0.554780 | 4.1:+53321440 | MS.gene51416:CDS |
| TCTCCTGGTGGTCTTCGTAA+AGG | 0.561046 | 4.1:+53320222 | MS.gene51416:CDS |
| AGCAATATTGGCTTACAATG+AGG | 0.563692 | 4.1:+53319734 | MS.gene51416:CDS |
| ATAGCTGATGCCCATATACA+AGG | 0.577441 | 4.1:+53319994 | MS.gene51416:CDS |
| TGAGACTCCACCACGTCTTG+AGG | 0.583689 | 4.1:+53318278 | MS.gene51416:CDS |
| TGCCCATATACAAGGCGGAA+TGG | 0.587617 | 4.1:+53320002 | MS.gene51416:CDS |
| TCATTCTTAGGGTTATCCAA+TGG | 0.594998 | 4.1:+53321195 | MS.gene51416:CDS |
| GCAGGGCAAATATGCAGCAA+TGG | 0.599931 | 4.1:+53318363 | MS.gene51416:intron |
| GCAGAAATACCATCCTTCTA+GGG | 0.600947 | 4.1:+53319671 | MS.gene51416:intron |
| GCTCCTTTACGAAGACCACC+AGG | 0.601739 | 4.1:-53320225 | None:intergenic |
| TATCTTCTGATAAGAAGCCA+GGG | 0.601972 | 4.1:-53320869 | None:intergenic |
| ACCGCAAAGTATGGTAAGCA+GGG | 0.604384 | 4.1:+53321153 | MS.gene51416:CDS |
| CCATATACAAGGCGGAATGG+TGG | 0.604392 | 4.1:+53320005 | MS.gene51416:CDS |
| TCTTGGAGGTCTATTTGCAG+GGG | 0.607411 | 4.1:+53321402 | MS.gene51416:CDS |
| TATAAATGGCTGATATACAA+TGG | 0.614615 | 4.1:-53319700 | None:intergenic |
| AAGTGAAAACACAGATAGTG+AGG | 0.626913 | 4.1:-53321221 | None:intergenic |
| GATCACACAGTTTAGGAACC+TGG | 0.633884 | 4.1:+53320895 | MS.gene51416:CDS |
| TGGTAAGCACCCTAGAAGGA+TGG | 0.634640 | 4.1:-53319680 | None:intergenic |
| TCAAAACAACAGGATCGCAA+AGG | 0.642728 | 4.1:+53320768 | MS.gene51416:CDS |
| CAGACGCTGCTGAACCAGCA+AGG | 0.656300 | 4.1:-53320149 | None:intergenic |
| AAACAGTACTATGCCAGGTG+AGG | 0.658783 | 4.1:-53320640 | None:intergenic |
| TTTGCGGTGAAATAAAACGC+TGG | 0.660087 | 4.1:-53321138 | None:intergenic |
| TATATTACCTCAAGACGTGG+TGG | 0.674673 | 4.1:-53318285 | None:intergenic |
| TGGAGTCTCACTGATGACCA+TGG | 0.695742 | 4.1:-53318265 | None:intergenic |
| GCGTTTGAGAATTCTCCTGG+TGG | 0.696893 | 4.1:+53320210 | MS.gene51416:CDS |
| ACCAGGAGAATTCTCAAACG+CGG | 0.707033 | 4.1:-53320208 | None:intergenic |
| GAACCTGTTCGGATACACTG+TGG | 0.714589 | 4.1:+53319779 | MS.gene51416:CDS |
| TTATATATTACCTCAAGACG+TGG | 0.729092 | 4.1:-53318288 | None:intergenic |
| CCAAAATCAGTACAAGACTG+CGG | 0.733677 | 4.1:+53319757 | MS.gene51416:CDS |
| AAGATCAAACACATTAAACG+TGG | 0.738203 | 4.1:-53321025 | None:intergenic |
| GCTGATGCCCATATACAAGG+CGG | 0.752747 | 4.1:+53319997 | MS.gene51416:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATGTTTTTTTATATTTTGTA+GGG | + | chr4.1:53321337-53321356 | MS.gene51416:intron | 10.0% |
| !!! | TATGTTTTTTTATATTTTGT+AGG | + | chr4.1:53321336-53321355 | MS.gene51416:intron | 10.0% |
| !! | ATTGTAAAATCTTAAGATTT+GGG | - | chr4.1:53319195-53319214 | None:intergenic | 15.0% |
| !! | GATATCAAATTTAACAATAA+AGG | + | chr4.1:53319417-53319436 | MS.gene51416:intron | 15.0% |
| !! | TAATCTGAATCTTAAAAATT+AGG | - | chr4.1:53320708-53320727 | None:intergenic | 15.0% |
| !! | TATTGTAAAATCTTAAGATT+TGG | - | chr4.1:53319196-53319215 | None:intergenic | 15.0% |
| !!! | AAAATTATTGAGTTTGTTAA+AGG | - | chr4.1:53319291-53319310 | None:intergenic | 15.0% |
| !!! | ATAATTTTAAGGAAAAATGT+AGG | + | chr4.1:53319303-53319322 | MS.gene51416:intron | 15.0% |
| !!! | GATTAAAAACTTTTATTCAA+AGG | - | chr4.1:53319636-53319655 | None:intergenic | 15.0% |
| !!! | TAACAAACTCAATAATTTTA+AGG | + | chr4.1:53319292-53319311 | MS.gene51416:intron | 15.0% |
| !!! | TAATTTTAAGGAAAAATGTA+GGG | + | chr4.1:53319304-53319323 | MS.gene51416:intron | 15.0% |
| !! | AGGAATAAAACAATTGTTAT+CGG | + | chr4.1:53320788-53320807 | MS.gene51416:CDS | 20.0% |
| !! | ATATACACAATGTATAAGAA+AGG | - | chr4.1:53320944-53320963 | None:intergenic | 20.0% |
| !! | ATGTTATCAAAATAACAATC+TGG | - | chr4.1:53319342-53319361 | None:intergenic | 20.0% |
| !! | TCAACATATACATTTGATAA+TGG | + | chr4.1:53320107-53320126 | MS.gene51416:intron | 20.0% |
| !! | TGAGAAAATAGATAAATTAC+CGG | - | chr4.1:53318472-53318491 | None:intergenic | 20.0% |
| !! | TGTTATCAAAATAACAATCT+GGG | - | chr4.1:53319341-53319360 | None:intergenic | 20.0% |
| !!! | ATTTAAAGTTTTAAACCATG+AGG | + | chr4.1:53318890-53318909 | MS.gene51416:intron | 20.0% |
| ! | AAACATACATGCAATATTTG+TGG | + | chr4.1:53318319-53318338 | MS.gene51416:intron | 25.0% |
| ! | AACATAAATGCATATTCTAG+AGG | - | chr4.1:53319868-53319887 | None:intergenic | 25.0% |
| ! | AAGCACTTAAAATTGAACTA+AGG | - | chr4.1:53319385-53319404 | None:intergenic | 25.0% |
| ! | AAGCTCAAAAAATGATGATA+TGG | - | chr4.1:53320496-53320515 | None:intergenic | 25.0% |
| ! | AAGTATACAAACAAATGAAC+AGG | - | chr4.1:53319840-53319859 | None:intergenic | 25.0% |
| ! | AATATTCTGTTCAGAAAGTT+TGG | - | chr4.1:53319497-53319516 | None:intergenic | 25.0% |
| ! | ACAATGTTAGCACATATATT+AGG | - | chr4.1:53320842-53320861 | None:intergenic | 25.0% |
| ! | ATAATGACAAATAATCACTC+TGG | - | chr4.1:53320429-53320448 | None:intergenic | 25.0% |
| ! | ATATTCTTGACATCATTCTT+AGG | + | chr4.1:53321183-53321202 | MS.gene51416:CDS | 25.0% |
| ! | ATTTGATAGAAACATGAAAG+TGG | - | chr4.1:53318586-53318605 | None:intergenic | 25.0% |
| ! | ATTTGTGGATTTCAATTCTT+TGG | + | chr4.1:53318334-53318353 | MS.gene51416:intron | 25.0% |
| ! | GAGAAAATAGATAAATTACC+GGG | - | chr4.1:53318471-53318490 | None:intergenic | 25.0% |
| ! | GTATATCAGCCATTTATATT+TGG | + | chr4.1:53319705-53319724 | MS.gene51416:CDS | 25.0% |
| ! | TAACTCTTCAATGTTTAGTT+TGG | + | chr4.1:53320257-53320276 | MS.gene51416:intron | 25.0% |
| ! | TAATGACAAATAATCACTCT+GGG | - | chr4.1:53320428-53320447 | None:intergenic | 25.0% |
| ! | TATAAATGGCTGATATACAA+TGG | - | chr4.1:53319703-53319722 | None:intergenic | 25.0% |
| ! | TATTCTTGACATCATTCTTA+GGG | + | chr4.1:53321184-53321203 | MS.gene51416:CDS | 25.0% |
| ! | TTACTATATTTACTTGTTCC+CGG | + | chr4.1:53318450-53318469 | MS.gene51416:CDS | 25.0% |
| ! | TTGATATTTCCATTTGTTTC+AGG | + | chr4.1:53320983-53321002 | MS.gene51416:intron | 25.0% |
| !! | AAAATAACAATCTGGGATAT+TGG | - | chr4.1:53319334-53319353 | None:intergenic | 25.0% |
| !! | TAAGCCAATTCTTTGAATTT+TGG | - | chr4.1:53319242-53319261 | None:intergenic | 25.0% |
| !! | TAAGGAGCTTAAACTTTTAA+GGG | + | chr4.1:53321274-53321293 | MS.gene51416:intron | 25.0% |
| !! | TTAAGGAGCTTAAACTTTTA+AGG | + | chr4.1:53321273-53321292 | MS.gene51416:intron | 25.0% |
| !!! | GATTTCAATTCTTTGGAATT+TGG | + | chr4.1:53318341-53318360 | MS.gene51416:intron | 25.0% |
| !!! | GTAAATAAGAGTGTTTTATG+TGG | + | chr4.1:53318866-53318885 | MS.gene51416:intron | 25.0% |
| AAAATCTTAAGATTTGGGCT+GGG | - | chr4.1:53319190-53319209 | None:intergenic | 30.0% | |
| AAAATGAATATGAACCTACC+AGG | - | chr4.1:53320916-53320935 | None:intergenic | 30.0% | |
| AAATTCTAACAGTTCCATGT+TGG | + | chr4.1:53318964-53318983 | MS.gene51416:intron | 30.0% | |
| AAGATCAAACACATTAAACG+TGG | - | chr4.1:53321028-53321047 | None:intergenic | 30.0% | |
| ATATGTGATGATTTAAGAGC+TGG | + | chr4.1:53320960-53320979 | MS.gene51416:intron | 30.0% | |
| ATTGGTATATGCATAGTTAG+TGG | + | chr4.1:53319961-53319980 | MS.gene51416:CDS | 30.0% | |
| CTGACCAAAATTCAAAGAAT+TGG | + | chr4.1:53319235-53319254 | MS.gene51416:intron | 30.0% | |
| GAGATATGACATGAAAATGT+GGG | + | chr4.1:53319121-53319140 | MS.gene51416:intron | 30.0% | |
| GCTTGTGTTCCAAATATAAA+TGG | - | chr4.1:53319717-53319736 | None:intergenic | 30.0% | |
| TAAAATCTTAAGATTTGGGC+TGG | - | chr4.1:53319191-53319210 | None:intergenic | 30.0% | |
| TACCTAAAAACGTGTTTACA+TGG | + | chr4.1:53318996-53319015 | MS.gene51416:intron | 30.0% | |
| TATGGTTAATAGGTAAAGGA+TGG | + | chr4.1:53321440-53321459 | MS.gene51416:CDS | 30.0% | |
| TGAGATATGACATGAAAATG+TGG | + | chr4.1:53319120-53319139 | MS.gene51416:intron | 30.0% | |
| TTATATATTACCTCAAGACG+TGG | - | chr4.1:53318291-53318310 | None:intergenic | 30.0% | |
| TTCACTCACCTATTAGTATT+CGG | - | chr4.1:53318741-53318760 | None:intergenic | 30.0% | |
| TTTAGTTGAAACCTTAGTCA+AGG | + | chr4.1:53318499-53318518 | MS.gene51416:intron | 30.0% | |
| ! | AAGGAGCTTAAACTTTTAAG+GGG | + | chr4.1:53321275-53321294 | MS.gene51416:intron | 30.0% |
| ! | ATTTGGAACACAAGCAATAT+TGG | + | chr4.1:53319722-53319741 | MS.gene51416:CDS | 30.0% |
| ! | TACTTCACGATTGGTAATTT+GGG | - | chr4.1:53320549-53320568 | None:intergenic | 30.0% |
| ! | TAGTTTCCTGAATTTGAGAT+GGG | + | chr4.1:53318553-53318572 | MS.gene51416:intron | 30.0% |
| ! | TCAGAGTTTAGCTTCATTAA+TGG | + | chr4.1:53320294-53320313 | MS.gene51416:intron | 30.0% |
| !! | CAATAAAAGCACCAATTGTT+GGG | - | chr4.1:53318668-53318687 | None:intergenic | 30.0% |
| !! | TCAATAAAAGCACCAATTGT+TGG | - | chr4.1:53318669-53318688 | None:intergenic | 30.0% |
| !! | TTTTATTTCACCGCAAAGTA+TGG | + | chr4.1:53321144-53321163 | MS.gene51416:CDS | 30.0% |
| AAAAGAAACAGTACTATGCC+AGG | - | chr4.1:53320648-53320667 | None:intergenic | 35.0% | |
| AAGTGAAAACACAGATAGTG+AGG | - | chr4.1:53321224-53321243 | None:intergenic | 35.0% | |
| ACTCGTGAAAATCTTGAAGA+TGG | + | chr4.1:53321065-53321084 | MS.gene51416:CDS | 35.0% | |
| AGGTAAAAACTCATCCAACA+TGG | - | chr4.1:53318981-53319000 | None:intergenic | 35.0% | |
| AGTGCTTAAATCCCAACAAT+TGG | + | chr4.1:53318654-53318673 | MS.gene51416:intron | 35.0% | |
| ATGTCCGTGACAAATTGAAA+AGG | - | chr4.1:53320684-53320703 | None:intergenic | 35.0% | |
| CATGGAAGATTCAAAACAAC+AGG | + | chr4.1:53320758-53320777 | MS.gene51416:CDS | 35.0% | |
| CATTGAAGAGTTAAACCTAC+TGG | - | chr4.1:53320250-53320269 | None:intergenic | 35.0% | |
| CTAAAAACGTGTTTACATGG+TGG | + | chr4.1:53318999-53319018 | MS.gene51416:intron | 35.0% | |
| CTAGTTTCCTGAATTTGAGA+TGG | + | chr4.1:53318552-53318571 | MS.gene51416:intron | 35.0% | |
| GACAAATTGAAAAGGGACAA+AGG | - | chr4.1:53320676-53320695 | None:intergenic | 35.0% | |
| GATGTTGCTAAATCCAACTA+TGG | - | chr4.1:53319916-53319935 | None:intergenic | 35.0% | |
| GATTTAGCAACATCTGGTAA+AGG | + | chr4.1:53319922-53319941 | MS.gene51416:CDS | 35.0% | |
| GTAATTACTACGAGGTTCAA+AGG | + | chr4.1:53320078-53320097 | MS.gene51416:intron | 35.0% | |
| TAACTAATGTGCTTCTTTCC+AGG | + | chr4.1:53320734-53320753 | MS.gene51416:intron | 35.0% | |
| TAGTTGGATTTAGCAACATC+TGG | + | chr4.1:53319916-53319935 | MS.gene51416:intron | 35.0% | |
| TATACGCACATACACGAAAT+AGG | - | chr4.1:53320382-53320401 | None:intergenic | 35.0% | |
| TATCTTCTGATAAGAAGCCA+GGG | - | chr4.1:53320872-53320891 | None:intergenic | 35.0% | |
| TCACTACAGCAGTAATTTCT+CGG | + | chr4.1:53321103-53321122 | MS.gene51416:CDS | 35.0% | |
| TCATTCTTAGGGTTATCCAA+TGG | + | chr4.1:53321195-53321214 | MS.gene51416:CDS | 35.0% | |
| TCCAACTATGGCAAGTAAAT+AGG | - | chr4.1:53319904-53319923 | None:intergenic | 35.0% | |
| TCCTATTTACTTGCCATAGT+TGG | + | chr4.1:53319900-53319919 | MS.gene51416:intron | 35.0% | |
| TCGCAATTGTAATTACTACG+AGG | + | chr4.1:53320070-53320089 | MS.gene51416:intron | 35.0% | |
| TCTTACCTCACAAAATCTGT+TGG | + | chr4.1:53319030-53319049 | MS.gene51416:intron | 35.0% | |
| TGCATAGTTAGTGGTGTATT+TGG | + | chr4.1:53319970-53319989 | MS.gene51416:CDS | 35.0% | |
| TGGCTATGGTTAATAGGTAA+AGG | + | chr4.1:53321436-53321455 | MS.gene51416:CDS | 35.0% | |
| TGTCCGTGACAAATTGAAAA+GGG | - | chr4.1:53320683-53320702 | None:intergenic | 35.0% | |
| TGTTAGAATTTAAGCCCATG+AGG | - | chr4.1:53318955-53318974 | None:intergenic | 35.0% | |
| TTCTTCAAATCATACGCATC+TGG | + | chr4.1:53319571-53319590 | MS.gene51416:intron | 35.0% | |
| ! | AAGAGCATACCTGAAACAAA+TGG | - | chr4.1:53320995-53321014 | None:intergenic | 35.0% |
| ! | AAGATCAGCTGTAACAGTTT+TGG | - | chr4.1:53320601-53320620 | None:intergenic | 35.0% |
| ! | ACACTCTTATTTACTCGATG+TGG | - | chr4.1:53318860-53318879 | None:intergenic | 35.0% |
| ! | ATCTTCAAGATTTTCACGAG+TGG | - | chr4.1:53321066-53321085 | None:intergenic | 35.0% |
| ! | CACCATGTAAACACGTTTTT+AGG | - | chr4.1:53319001-53319020 | None:intergenic | 35.0% |
| ! | CACTCTTATTTACTCGATGT+GGG | - | chr4.1:53318859-53318878 | None:intergenic | 35.0% |
| ! | CACTCTTATTTAGTCGATGT+GGG | - | chr4.1:53318638-53318657 | None:intergenic | 35.0% |
| ! | CTAACATTGTCTATTTTCCC+TGG | + | chr4.1:53320852-53320871 | MS.gene51416:CDS | 35.0% |
| ! | GGAGAGATTGGAACTTTTAT+TGG | + | chr4.1:53319943-53319962 | MS.gene51416:CDS | 35.0% |
| ! | GTACTTCACGATTGGTAATT+TGG | - | chr4.1:53320550-53320569 | None:intergenic | 35.0% |
| ! | TATTTCTGCACAAGGAAGAA+AGG | - | chr4.1:53319660-53319679 | None:intergenic | 35.0% |
| ! | TGTCCCTTTTCAATTTGTCA+CGG | + | chr4.1:53320677-53320696 | MS.gene51416:intron | 35.0% |
| ! | TGTGGTTTTCTTTGGCATTT+TGG | + | chr4.1:53319797-53319816 | MS.gene51416:CDS | 35.0% |
| !! | AGCAATATTGGCTTACAATG+AGG | + | chr4.1:53319734-53319753 | MS.gene51416:CDS | 35.0% |
| !! | CAATTCTTTGGAATTTGGCA+GGG | + | chr4.1:53318346-53318365 | MS.gene51416:intron | 35.0% |
| !! | CCAGTTTTGTAAGTTGAGTT+GGG | + | chr4.1:53319164-53319183 | MS.gene51416:intron | 35.0% |
| !! | TCAATTCTTTGGAATTTGGC+AGG | + | chr4.1:53318345-53318364 | MS.gene51416:intron | 35.0% |
| !! | TTGGTGCTTTTATTGAGAGT+TGG | + | chr4.1:53318673-53318692 | MS.gene51416:intron | 35.0% |
| !! | TTTCCCAAAGCATTTTGTTC+AGG | - | chr4.1:53321364-53321383 | None:intergenic | 35.0% |
| !!! | TGTAACAGTTTTGGATCCTT+CGG | - | chr4.1:53320592-53320611 | None:intergenic | 35.0% |
| AACACCTTAATCCAGACTAG+AGG | - | chr4.1:53318715-53318734 | None:intergenic | 40.0% | |
| ACAGATAGTGAGGTAACCAT+TGG | - | chr4.1:53321214-53321233 | None:intergenic | 40.0% | |
| ACATCTGGTAAAGGAGAGAT+TGG | + | chr4.1:53319931-53319950 | MS.gene51416:CDS | 40.0% | |
| ACTCACCTATTAGTATTCGG+TGG | - | chr4.1:53318738-53318757 | None:intergenic | 40.0% | |
| AGACCTATCTTACATGCTTC+CGG | + | chr4.1:53320029-53320048 | MS.gene51416:CDS | 40.0% | |
| ATAGAGGAAAGGGCTATCAT+CGG | + | chr4.1:53318767-53318786 | MS.gene51416:intron | 40.0% | |
| ATAGCTGATGCCCATATACA+AGG | + | chr4.1:53319994-53320013 | MS.gene51416:CDS | 40.0% | |
| ATGCTGACCTGAATGAATTC+CGG | - | chr4.1:53320051-53320070 | None:intergenic | 40.0% | |
| ATGTTGATGCTGTGTCTTCT+TGG | + | chr4.1:53321385-53321404 | MS.gene51416:CDS | 40.0% | |
| CACATCGCTAGTGACAATAT+CGG | - | chr4.1:53319601-53319620 | None:intergenic | 40.0% | |
| CCAAAATCAGTACAAGACTG+CGG | + | chr4.1:53319757-53319776 | MS.gene51416:CDS | 40.0% | |
| CCCAACTCAACTTACAAAAC+TGG | - | chr4.1:53319167-53319186 | None:intergenic | 40.0% | |
| GATACTGGATCACACAGTTT+AGG | + | chr4.1:53320888-53320907 | MS.gene51416:CDS | 40.0% | |
| GCAGAAATACCATCCTTCTA+GGG | + | chr4.1:53319671-53319690 | MS.gene51416:intron | 40.0% | |
| GGACCTGAACAAAATGCTTT+GGG | + | chr4.1:53321358-53321377 | MS.gene51416:CDS | 40.0% | |
| GGCTTCTTATCAGAAGATAC+TGG | + | chr4.1:53320873-53320892 | MS.gene51416:CDS | 40.0% | |
| GTATCTTCTGATAAGAAGCC+AGG | - | chr4.1:53320873-53320892 | None:intergenic | 40.0% | |
| GTGTTCCACCGAATACTAAT+AGG | + | chr4.1:53318730-53318749 | MS.gene51416:intron | 40.0% | |
| GTTACCTCTAGTCTGGATTA+AGG | + | chr4.1:53318708-53318727 | MS.gene51416:intron | 40.0% | |
| TATATTACCTCAAGACGTGG+TGG | - | chr4.1:53318288-53318307 | None:intergenic | 40.0% | |
| TCAAAACAACAGGATCGCAA+AGG | + | chr4.1:53320768-53320787 | MS.gene51416:CDS | 40.0% | |
| TGAGAGTTGGAACACAGAAA+GGG | + | chr4.1:53318686-53318705 | MS.gene51416:intron | 40.0% | |
| TGCAGAAATACCATCCTTCT+AGG | + | chr4.1:53319670-53319689 | MS.gene51416:intron | 40.0% | |
| TTCTGCACCTAAAGGTTACA+AGG | + | chr4.1:53321242-53321261 | MS.gene51416:CDS | 40.0% | |
| TTCTTGGAGGTCTATTTGCA+GGG | + | chr4.1:53321401-53321420 | MS.gene51416:CDS | 40.0% | |
| TTGAGAGTTGGAACACAGAA+AGG | + | chr4.1:53318685-53318704 | MS.gene51416:intron | 40.0% | |
| TTTGCGGTGAAATAAAACGC+TGG | - | chr4.1:53321141-53321160 | None:intergenic | 40.0% | |
| ! | AAGGATGGTATTTCTGCACA+AGG | - | chr4.1:53319668-53319687 | None:intergenic | 40.0% |
| ! | ACCCAAAAGACTAGTCCATT+AGG | - | chr4.1:53318924-53318943 | None:intergenic | 40.0% |
| ! | ATTCCGGAAGCATGTAAGAT+AGG | - | chr4.1:53320035-53320054 | None:intergenic | 40.0% |
| ! | CAAAAGACTAGTCCATTAGG+GGG | - | chr4.1:53318921-53318940 | None:intergenic | 40.0% |
| ! | CCAAAAGACTAGTCCATTAG+GGG | - | chr4.1:53318922-53318941 | None:intergenic | 40.0% |
| ! | CCCAAAAGACTAGTCCATTA+GGG | - | chr4.1:53318923-53318942 | None:intergenic | 40.0% |
| ! | CTTGACTGGCTATGGTTAAT+AGG | + | chr4.1:53321430-53321449 | MS.gene51416:CDS | 40.0% |
| ! | GCACTCTTATTTAGTCGATG+TGG | - | chr4.1:53318639-53318658 | None:intergenic | 40.0% |
| ! | GGATACACTGTGGTTTTCTT+TGG | + | chr4.1:53319789-53319808 | MS.gene51416:CDS | 40.0% |
| ! | GTTTTCACTTCTGCACCTAA+AGG | + | chr4.1:53321234-53321253 | MS.gene51416:CDS | 40.0% |
| !! | ATGGTGATTTGCTGGTTTCT+TGG | + | chr4.1:53318382-53318401 | MS.gene51416:CDS | 40.0% |
| !! | ATTTGCTGGTTTCTTGGCAT+TGG | + | chr4.1:53318388-53318407 | MS.gene51416:CDS | 40.0% |
| !! | GCCAGTTTTGTAAGTTGAGT+TGG | + | chr4.1:53319163-53319182 | MS.gene51416:intron | 40.0% |
| !! | GTTTTGAATCTTCCATGTCC+TGG | - | chr4.1:53320755-53320774 | None:intergenic | 40.0% |
| !! | TTTGCTGGTTTCTTGGCATT+GGG | + | chr4.1:53318389-53318408 | MS.gene51416:CDS | 40.0% |
| !!! | CCCTAATGGACTAGTCTTTT+GGG | + | chr4.1:53318920-53318939 | MS.gene51416:intron | 40.0% |
| AAACAGTACTATGCCAGGTG+AGG | - | chr4.1:53320643-53320662 | None:intergenic | 45.0% | |
| AAACCACAGTGTATCCGAAC+AGG | - | chr4.1:53319785-53319804 | None:intergenic | 45.0% | |
| ACAATGGTAAGCACCCTAGA+AGG | - | chr4.1:53319687-53319706 | None:intergenic | 45.0% | |
| ACACAGTTTAGGAACCTGGT+AGG | + | chr4.1:53320899-53320918 | MS.gene51416:intron | 45.0% | |
| ACCAGGAGAATTCTCAAACG+CGG | - | chr4.1:53320211-53320230 | None:intergenic | 45.0% | |
| ACCGCAAAGTATGGTAAGCA+GGG | + | chr4.1:53321153-53321172 | MS.gene51416:CDS | 45.0% | |
| AGAAAGGGTTACCTCTAGTC+TGG | + | chr4.1:53318701-53318720 | MS.gene51416:intron | 45.0% | |
| AGACCCACCTTGTAACCTTT+AGG | - | chr4.1:53321252-53321271 | None:intergenic | 45.0% | |
| AGTCGATGTGGGACTATAAC+AGG | - | chr4.1:53318627-53318646 | None:intergenic | 45.0% | |
| ATGGCAAAGAACAGAACTGC+AGG | - | chr4.1:53320477-53320496 | None:intergenic | 45.0% | |
| ATGTGCTTCTTTCCAGGACA+TGG | + | chr4.1:53320740-53320759 | MS.gene51416:intron | 45.0% | |
| CAATAGAGTGAAAACCGTCG+TGG | + | chr4.1:53318798-53318817 | MS.gene51416:intron | 45.0% | |
| CACCATTCCGCCTTGTATAT+GGG | - | chr4.1:53320007-53320026 | None:intergenic | 45.0% | |
| CACTCTTAGTCCTGAGTATG+AGG | + | chr4.1:53319071-53319090 | MS.gene51416:intron | 45.0% | |
| CATATACAAGGCGGAATGGT+GGG | + | chr4.1:53320006-53320025 | MS.gene51416:CDS | 45.0% | |
| CATGCTTCCGGAATTCATTC+AGG | + | chr4.1:53320041-53320060 | MS.gene51416:CDS | 45.0% | |
| CTCATACTCAGGACTAAGAG+TGG | - | chr4.1:53319073-53319092 | None:intergenic | 45.0% | |
| CTTCTTGGAGGTCTATTTGC+AGG | + | chr4.1:53321400-53321419 | MS.gene51416:CDS | 45.0% | |
| GAACGGTAGTACTTCACGAT+TGG | - | chr4.1:53320558-53320577 | None:intergenic | 45.0% | |
| GATCACACAGTTTAGGAACC+TGG | + | chr4.1:53320895-53320914 | MS.gene51416:CDS | 45.0% | |
| GATGATAGCCCTTTCCTCTA+TGG | - | chr4.1:53318768-53318787 | None:intergenic | 45.0% | |
| GCACCTAAAGGTTACAAGGT+GGG | + | chr4.1:53321246-53321265 | MS.gene51416:intron | 45.0% | |
| GGGACCTGAACAAAATGCTT+TGG | + | chr4.1:53321357-53321376 | MS.gene51416:intron | 45.0% | |
| GTGTGTTGAGAGTCTCACAT+TGG | + | chr4.1:53319096-53319115 | MS.gene51416:intron | 45.0% | |
| GTTACAAGGTGGGTCTGTTA+AGG | + | chr4.1:53321256-53321275 | MS.gene51416:intron | 45.0% | |
| TAGAGGAAAGGGCTATCATC+GGG | + | chr4.1:53318768-53318787 | MS.gene51416:intron | 45.0% | |
| TCTTAGTCCTGAGTATGAGG+AGG | + | chr4.1:53319074-53319093 | MS.gene51416:intron | 45.0% | |
| TCTTGGAGGTCTATTTGCAG+GGG | + | chr4.1:53321402-53321421 | MS.gene51416:CDS | 45.0% | |
| TGCACCTAAAGGTTACAAGG+TGG | + | chr4.1:53321245-53321264 | MS.gene51416:intron | 45.0% | |
| TGCTGCTACAACCTTGACTA+AGG | - | chr4.1:53318513-53318532 | None:intergenic | 45.0% | |
| TGGCAAAGAACAGAACTGCA+GGG | - | chr4.1:53320476-53320495 | None:intergenic | 45.0% | |
| TTGATGCTGTGTCTTCTTGG+AGG | + | chr4.1:53321388-53321407 | MS.gene51416:CDS | 45.0% | |
| ! | ATGCAGCAATGGTGATTTGC+TGG | + | chr4.1:53318374-53318393 | MS.gene51416:CDS | 45.0% |
| ! | CACGACGGTTTTCACTCTAT+TGG | - | chr4.1:53318800-53318819 | None:intergenic | 45.0% |
| ! | GTGGACCAACAGATTTTGTG+AGG | - | chr4.1:53319038-53319057 | None:intergenic | 45.0% |
| !! | TTGCTGGTTTCTTGGCATTG+GGG | + | chr4.1:53318390-53318409 | MS.gene51416:CDS | 45.0% |
| !!! | AACAGTTTTGGATCCTTCGG+AGG | - | chr4.1:53320589-53320608 | None:intergenic | 45.0% |
| !!! | CCCCTAATGGACTAGTCTTT+TGG | + | chr4.1:53318919-53318938 | MS.gene51416:intron | 45.0% |
| !!! | CCGCAGTCTTGTACTGATTT+TGG | - | chr4.1:53319760-53319779 | None:intergenic | 45.0% |
| ACAAGACTGCGGAACCTGTT+CGG | + | chr4.1:53319768-53319787 | MS.gene51416:CDS | 50.0% | |
| AGAGTGGTAGATAGCGTTCG+TGG | - | chr4.1:53319057-53319076 | None:intergenic | 50.0% | |
| CAAAGTATGGTAAGCAGGGC+TGG | + | chr4.1:53321157-53321176 | MS.gene51416:CDS | 50.0% | |
| CAACACACCTCCTCATACTC+AGG | - | chr4.1:53319084-53319103 | None:intergenic | 50.0% | |
| CACCGCAAAGTATGGTAAGC+AGG | + | chr4.1:53321152-53321171 | MS.gene51416:CDS | 50.0% | |
| CCACCATTCCGCCTTGTATA+TGG | - | chr4.1:53320008-53320027 | None:intergenic | 50.0% | |
| CCATATACAAGGCGGAATGG+TGG | + | chr4.1:53320005-53320024 | MS.gene51416:CDS | 50.0% | |
| GAACCTGTTCGGATACACTG+TGG | + | chr4.1:53319779-53319798 | MS.gene51416:CDS | 50.0% | |
| GATAGCCCTTTCCTCTATGG+CGG | - | chr4.1:53318765-53318784 | None:intergenic | 50.0% | |
| GCAGGGCAAATATGCAGCAA+TGG | + | chr4.1:53318363-53318382 | MS.gene51416:intron | 50.0% | |
| GCCCTGCTTACCATACTTTG+CGG | - | chr4.1:53321157-53321176 | None:intergenic | 50.0% | |
| GCGTTTGAGAATTCTCCTGG+TGG | + | chr4.1:53320210-53320229 | MS.gene51416:CDS | 50.0% | |
| GCTGATGCCCATATACAAGG+CGG | + | chr4.1:53319997-53320016 | MS.gene51416:CDS | 50.0% | |
| GCTGTGCCCATCTCAAATTC+AGG | - | chr4.1:53318562-53318581 | None:intergenic | 50.0% | |
| GTCACTAGCGATGTGATCGT+AGG | + | chr4.1:53319606-53319625 | MS.gene51416:intron | 50.0% | |
| GTCTTCGTAAAGGAGCCAGT+AGG | + | chr4.1:53320232-53320251 | MS.gene51416:intron | 50.0% | |
| TCTCCTGGTGGTCTTCGTAA+AGG | + | chr4.1:53320222-53320241 | MS.gene51416:CDS | 50.0% | |
| TGAAGCCGCCATAGAGGAAA+GGG | + | chr4.1:53318757-53318776 | MS.gene51416:intron | 50.0% | |
| TGCCCATATACAAGGCGGAA+TGG | + | chr4.1:53320002-53320021 | MS.gene51416:CDS | 50.0% | |
| TGGTAAGCACCCTAGAAGGA+TGG | - | chr4.1:53319683-53319702 | None:intergenic | 50.0% | |
| TTGCAGGGGTAACACTTGAC+TGG | + | chr4.1:53321416-53321435 | MS.gene51416:CDS | 50.0% | |
| TTGGGTTACGCTCTCCTCAT+GGG | + | chr4.1:53318938-53318957 | MS.gene51416:intron | 50.0% | |
| TTGTTGCAGTCGTTCCTTGC+TGG | + | chr4.1:53320135-53320154 | MS.gene51416:intron | 50.0% | |
| ! | GGGTAACACTTGACTGGCTA+TGG | + | chr4.1:53321422-53321441 | MS.gene51416:CDS | 50.0% |
| ! | TTTGGGTTACGCTCTCCTCA+TGG | + | chr4.1:53318937-53318956 | MS.gene51416:intron | 50.0% |
| !! | TGCTGGTTTCTTGGCATTGG+GGG | + | chr4.1:53318391-53318410 | MS.gene51416:CDS | 50.0% |
| ACAGCTGATCTTGCTGCAGC+TGG | + | chr4.1:53320609-53320628 | MS.gene51416:CDS | 55.0% | |
| AGTGAAAACCGTCGTGGACG+CGG | + | chr4.1:53318804-53318823 | MS.gene51416:intron | 55.0% | |
| CATGAGGCTCTACCCCCTAA+TGG | + | chr4.1:53318906-53318925 | MS.gene51416:intron | 55.0% | |
| CATTAGGGGGTAGAGCCTCA+TGG | - | chr4.1:53318908-53318927 | None:intergenic | 55.0% | |
| GCCGCGTTTGAGAATTCTCC+TGG | + | chr4.1:53320207-53320226 | MS.gene51416:CDS | 55.0% | |
| GCTCCTTTACGAAGACCACC+AGG | - | chr4.1:53320228-53320247 | None:intergenic | 55.0% | |
| GTACTATGCCAGGTGAGGTC+TGG | - | chr4.1:53320638-53320657 | None:intergenic | 55.0% | |
| GTGAAGCCGCCATAGAGGAA+AGG | + | chr4.1:53318756-53318775 | MS.gene51416:intron | 55.0% | |
| TCGTGGACGCGGCTCTTAAA+GGG | + | chr4.1:53318815-53318834 | MS.gene51416:intron | 55.0% | |
| TGAGACTCCACCACGTCTTG+AGG | + | chr4.1:53318278-53318297 | MS.gene51416:CDS | 55.0% | |
| TTTAAGAGCCGCGTCCACGA+CGG | - | chr4.1:53318815-53318834 | None:intergenic | 55.0% | |
| ! | CTTCGGAGGCTGCTTTCGAA+CGG | - | chr4.1:53320575-53320594 | None:intergenic | 55.0% |
| ! | GCATTGGGGGTCTTTTCGCT+TGG | + | chr4.1:53318404-53318423 | MS.gene51416:CDS | 55.0% |
| CAGACGCTGCTGAACCAGCA+AGG | - | chr4.1:53320152-53320171 | None:intergenic | 60.0% | |
| CGTTCGAAAGCAGCCTCCGA+AGG | + | chr4.1:53320573-53320592 | MS.gene51416:CDS | 60.0% | |
| GGTGAGTGAAGCCGCCATAG+AGG | + | chr4.1:53318751-53318770 | MS.gene51416:intron | 60.0% | |
| GTCGTGGACGCGGCTCTTAA+AGG | + | chr4.1:53318814-53318833 | MS.gene51416:intron | 60.0% | |
| !! | CTTGCTGGTTCAGCAGCGTC+TGG | + | chr4.1:53320150-53320169 | MS.gene51416:CDS | 60.0% |
| GCTGGCATCCAGACCTCACC+TGG | + | chr4.1:53320627-53320646 | MS.gene51416:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 53318267 | 53321465 | 53318267 | ID=MS.gene51416 |
| chr4.1 | mRNA | 53318267 | 53321465 | 53318267 | ID=MS.gene51416.t1;Parent=MS.gene51416 |
| chr4.1 | exon | 53318267 | 53318299 | 53318267 | ID=MS.gene51416.t1.exon1;Parent=MS.gene51416.t1 |
| chr4.1 | CDS | 53318267 | 53318299 | 53318267 | ID=cds.MS.gene51416.t1;Parent=MS.gene51416.t1 |
| chr4.1 | exon | 53318367 | 53318471 | 53318367 | ID=MS.gene51416.t1.exon2;Parent=MS.gene51416.t1 |
| chr4.1 | CDS | 53318367 | 53318471 | 53318367 | ID=cds.MS.gene51416.t1;Parent=MS.gene51416.t1 |
| chr4.1 | exon | 53319675 | 53319830 | 53319675 | ID=MS.gene51416.t1.exon3;Parent=MS.gene51416.t1 |
| chr4.1 | CDS | 53319675 | 53319830 | 53319675 | ID=cds.MS.gene51416.t1;Parent=MS.gene51416.t1 |
| chr4.1 | exon | 53319919 | 53320062 | 53319919 | ID=MS.gene51416.t1.exon4;Parent=MS.gene51416.t1 |
| chr4.1 | CDS | 53319919 | 53320062 | 53319919 | ID=cds.MS.gene51416.t1;Parent=MS.gene51416.t1 |
| chr4.1 | exon | 53320144 | 53320249 | 53320144 | ID=MS.gene51416.t1.exon5;Parent=MS.gene51416.t1 |
| chr4.1 | CDS | 53320144 | 53320249 | 53320144 | ID=cds.MS.gene51416.t1;Parent=MS.gene51416.t1 |
| chr4.1 | exon | 53320481 | 53320653 | 53320481 | ID=MS.gene51416.t1.exon6;Parent=MS.gene51416.t1 |
| chr4.1 | CDS | 53320481 | 53320653 | 53320481 | ID=cds.MS.gene51416.t1;Parent=MS.gene51416.t1 |
| chr4.1 | exon | 53320756 | 53320916 | 53320756 | ID=MS.gene51416.t1.exon7;Parent=MS.gene51416.t1 |
| chr4.1 | CDS | 53320756 | 53320916 | 53320756 | ID=cds.MS.gene51416.t1;Parent=MS.gene51416.t1 |
| chr4.1 | exon | 53321005 | 53321263 | 53321005 | ID=MS.gene51416.t1.exon8;Parent=MS.gene51416.t1 |
| chr4.1 | CDS | 53321005 | 53321263 | 53321005 | ID=cds.MS.gene51416.t1;Parent=MS.gene51416.t1 |
| chr4.1 | exon | 53321358 | 53321465 | 53321358 | ID=MS.gene51416.t1.exon9;Parent=MS.gene51416.t1 |
| chr4.1 | CDS | 53321358 | 53321465 | 53321358 | ID=cds.MS.gene51416.t1;Parent=MS.gene51416.t1 |
| Gene Sequence |
| Protein sequence |
