Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35750.t1 | XP_003597087.1 | 97.8 | 414 | 9 | 0 | 1 | 414 | 1 | 414 | 6.40E-231 | 809.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35750.t1 | Q9M0Y3 | 71.1 | 408 | 117 | 1 | 5 | 412 | 8 | 414 | 1.7e-168 | 593.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35750.t1 | G7IRM9 | 97.8 | 414 | 9 | 0 | 1 | 414 | 1 | 414 | 4.6e-231 | 809.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049822 | MS.gene35750 | 0.811856 | 5.68E-51 | -1.69E-46 |
| MS.gene054536 | MS.gene35750 | 0.803599 | 3.23E-49 | -1.69E-46 |
| MS.gene056975 | MS.gene35750 | 0.805199 | 1.50E-49 | -1.69E-46 |
| MS.gene057999 | MS.gene35750 | 0.812152 | 4.90E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene35750 | MS.gene51416 | PPI |
| MS.gene35750 | MS.gene51414 | PPI |
| MS.gene35750 | MS.gene046074 | PPI |
| MS.gene35750 | MS.gene043342 | PPI |
| MS.gene35750 | MS.gene064214 | PPI |
| MS.gene35750 | MS.gene046071 | PPI |
| MS.gene35750 | MS.gene31551 | PPI |
| MS.gene35750 | MS.gene45320 | PPI |
| MS.gene35750 | MS.gene029003 | PPI |
| MS.gene35750 | MS.gene45318 | PPI |
| MS.gene35750 | MS.gene064217 | PPI |
| MS.gene35750 | MS.gene064218 | PPI |
| MS.gene064217 | MS.gene35750 | PPI |
| MS.gene35750 | MS.gene046073 | PPI |
| MS.gene35750 | MS.gene51411 | PPI |
| MS.gene35750 | MS.gene45316 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35750.t1 | MTR_4g050990 | 97.826 | 414 | 9 | 0 | 1 | 414 | 1 | 414 | 0.0 | 827 |
| MS.gene35750.t1 | MTR_2g089520 | 97.826 | 414 | 9 | 0 | 1 | 414 | 1 | 414 | 0.0 | 827 |
| MS.gene35750.t1 | MTR_0008s0170 | 82.609 | 414 | 72 | 0 | 1 | 414 | 1 | 414 | 0.0 | 703 |
| MS.gene35750.t1 | MTR_0008s0130 | 76.812 | 414 | 96 | 0 | 1 | 414 | 1 | 414 | 0.0 | 665 |
| MS.gene35750.t1 | MTR_2g047968 | 77.561 | 410 | 92 | 0 | 1 | 410 | 1 | 410 | 0.0 | 631 |
| MS.gene35750.t1 | MTR_2g011600 | 69.363 | 408 | 123 | 2 | 7 | 412 | 14 | 421 | 0.0 | 579 |
| MS.gene35750.t1 | MTR_2g011580 | 70.263 | 380 | 112 | 1 | 34 | 412 | 1 | 380 | 0.0 | 547 |
| MS.gene35750.t1 | MTR_2g011600 | 68.595 | 363 | 112 | 2 | 52 | 412 | 8 | 370 | 0.0 | 509 |
| MS.gene35750.t1 | MTR_1g071120 | 71.347 | 349 | 91 | 3 | 11 | 358 | 53 | 393 | 3.50e-177 | 501 |
| MS.gene35750.t1 | MTR_8g007285 | 60.331 | 363 | 142 | 1 | 52 | 412 | 2 | 364 | 1.91e-146 | 421 |
| MS.gene35750.t1 | MTR_0003s0470 | 32.048 | 415 | 242 | 12 | 11 | 410 | 26 | 415 | 1.25e-53 | 184 |
| MS.gene35750.t1 | MTR_3g462280 | 30.424 | 401 | 252 | 7 | 18 | 410 | 42 | 423 | 6.04e-45 | 161 |
| MS.gene35750.t1 | MTR_4g114710 | 28.706 | 425 | 256 | 11 | 1 | 410 | 6 | 398 | 1.08e-40 | 149 |
| MS.gene35750.t1 | MTR_2g011530 | 71.739 | 92 | 25 | 1 | 278 | 368 | 2 | 93 | 1.16e-37 | 132 |
| MS.gene35750.t1 | MTR_2g011540 | 48.889 | 135 | 62 | 1 | 52 | 179 | 2 | 136 | 1.13e-35 | 129 |
| MS.gene35750.t1 | MTR_2g011560 | 38.060 | 134 | 32 | 2 | 177 | 310 | 17 | 99 | 3.86e-17 | 77.4 |
| MS.gene35750.t1 | MTR_2g011570 | 55.385 | 65 | 22 | 1 | 137 | 201 | 1 | 58 | 1.62e-13 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35750.t1 | AT4G05120 | 71.078 | 408 | 117 | 1 | 5 | 412 | 8 | 414 | 0.0 | 611 |
| MS.gene35750.t1 | AT4G05120 | 71.078 | 408 | 117 | 1 | 5 | 412 | 8 | 414 | 0.0 | 611 |
| MS.gene35750.t1 | AT4G05110 | 67.402 | 408 | 132 | 1 | 5 | 412 | 8 | 414 | 0.0 | 579 |
| MS.gene35750.t1 | AT4G05110 | 67.402 | 408 | 132 | 1 | 5 | 412 | 8 | 414 | 0.0 | 579 |
| MS.gene35750.t1 | AT4G05110 | 67.157 | 408 | 133 | 1 | 5 | 412 | 8 | 414 | 0.0 | 578 |
| MS.gene35750.t1 | AT4G05140 | 66.912 | 408 | 135 | 0 | 5 | 412 | 8 | 415 | 0.0 | 575 |
| MS.gene35750.t1 | AT4G05130 | 64.477 | 411 | 143 | 2 | 5 | 414 | 8 | 416 | 0.0 | 555 |
| MS.gene35750.t1 | AT3G09990 | 64.461 | 408 | 144 | 1 | 8 | 414 | 10 | 417 | 0.0 | 542 |
| MS.gene35750.t1 | AT1G61630 | 61.244 | 418 | 152 | 3 | 1 | 412 | 1 | 414 | 0.0 | 511 |
| MS.gene35750.t1 | AT1G70330 | 31.477 | 413 | 239 | 8 | 16 | 410 | 64 | 450 | 3.53e-51 | 178 |
| MS.gene35750.t1 | AT1G02630 | 29.298 | 413 | 252 | 9 | 5 | 410 | 10 | 389 | 2.99e-48 | 169 |
| MS.gene35750.t1 | AT1G02630 | 28.708 | 209 | 146 | 3 | 5 | 212 | 10 | 216 | 4.89e-24 | 102 |
Find 91 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTCTTGAAATTCTTGAAAT+TGG | 0.116609 | 2.1:-12562093 | MS.gene35750:CDS |
| GTGCATTAACCTCTGCTTTA+AGG | 0.117350 | 2.1:-12563008 | MS.gene35750:CDS |
| TTACTACATTTACTTGTTTC+CGG | 0.228601 | 2.1:-12564159 | MS.gene35750:intron |
| GAAAGAAATAGTACTTCTTT+AGG | 0.270591 | 2.1:+12562585 | None:intergenic |
| AGCAGCATTTGATAATTCTA+AGG | 0.310431 | 2.1:-12562974 | MS.gene35750:CDS |
| GGGAAAATATGCTGCAATAT+TGG | 0.315284 | 2.1:-12564243 | MS.gene35750:CDS |
| GATAATGTTGACATCATTCT+TGG | 0.317000 | 2.1:-12561976 | MS.gene35750:CDS |
| ATCTGCACCCAAAGGTTATA+AGG | 0.329152 | 2.1:-12561916 | MS.gene35750:intron |
| GTACTTCTTTAGGTATTGTT+TGG | 0.329362 | 2.1:+12562595 | None:intergenic |
| AGAGTGTCAATGCATAAATT+AGG | 0.353300 | 2.1:+12562406 | None:intergenic |
| CTATGTGGTTTGGCAGCATC+TGG | 0.357354 | 2.1:-12563030 | MS.gene35750:CDS |
| ATATTGGTATGCTTCCTTCT+TGG | 0.358786 | 2.1:-12564227 | MS.gene35750:CDS |
| CTAGACTGGTTGTGGTTGAT+AGG | 0.364036 | 2.1:-12561593 | MS.gene35750:CDS |
| AAGCTCAAAGAATGTTGATA+TGG | 0.364975 | 2.1:+12562737 | None:intergenic |
| AGGTCTCACCTTATAACCTT+TGG | 0.376157 | 2.1:+12561908 | None:intergenic |
| TACAATGTGTGGGATCTAAT+AGG | 0.376699 | 2.1:-12562128 | MS.gene35750:CDS |
| TAGCTGACCTGAATGAATTC+TGG | 0.378851 | 2.1:+12563519 | None:intergenic |
| GATACTGGAGCACATAGTTT+AGG | 0.386930 | 2.1:-12562357 | MS.gene35750:CDS |
| GGTCTCACCTTATAACCTTT+GGG | 0.400024 | 2.1:+12561909 | None:intergenic |
| AAGATCAGCTGAAACCGTTT+TGG | 0.400371 | 2.1:+12562632 | None:intergenic |
| CTGTTGGTGTTGTTTCTACT+AGG | 0.406878 | 2.1:-12561638 | MS.gene35750:CDS |
| ACAGTCTTTCCTATGTGGTT+TGG | 0.413718 | 2.1:-12563040 | MS.gene35750:intron |
| ATAATGTTGACATCATTCTT+GGG | 0.414131 | 2.1:-12561975 | MS.gene35750:CDS |
| ACTAGATTCAGGAACCTGTT+TGG | 0.415644 | 2.1:-12563796 | MS.gene35750:CDS |
| GGATTTCTGTCTGAAGATAC+TGG | 0.422546 | 2.1:-12562372 | MS.gene35750:CDS |
| GGGTCCAGAACAAAATGCTT+TGG | 0.429540 | 2.1:-12561666 | MS.gene35750:CDS |
| GTATGCTTCCTTCTTGGCAA+TGG | 0.430207 | 2.1:-12564221 | MS.gene35750:CDS |
| CATGTTCAAGGTGGAATGAT+TGG | 0.433600 | 2.1:-12563561 | MS.gene35750:CDS |
| CAAAAGTCAATACTAGATTC+AGG | 0.435364 | 2.1:-12563807 | MS.gene35750:CDS |
| GTACGGTAGTACTTCACAAT+TGG | 0.437196 | 2.1:+12562675 | None:intergenic |
| CATGAAGCCAGAATTCATTC+AGG | 0.440760 | 2.1:-12563526 | MS.gene35750:intron |
| GTATCTTCAGACAGAAATCC+AGG | 0.444209 | 2.1:+12562375 | None:intergenic |
| GGTCCAGAACAAAATGCTTT+GGG | 0.444913 | 2.1:-12561665 | MS.gene35750:CDS |
| TAGTTGGATTTAGCAACATC+TGG | 0.446987 | 2.1:-12563651 | MS.gene35750:CDS |
| TGCTATATTGTCTTATAATG+AGG | 0.452571 | 2.1:-12563830 | MS.gene35750:CDS |
| CTAGTAGAAACAACACCAAC+AGG | 0.458306 | 2.1:+12561639 | None:intergenic |
| TCTAAGGATGGTCTTAGAAA+AGG | 0.472918 | 2.1:-12562958 | MS.gene35750:CDS |
| TGTGCAATTAGTGGTGCCTT+TGG | 0.477018 | 2.1:-12563597 | MS.gene35750:CDS |
| TGCAGAATTATCATCCCTCC+AGG | 0.479683 | 2.1:-12563894 | MS.gene35750:intron |
| GCAAGTGTTCCAACTGCAAA+TGG | 0.482568 | 2.1:+12563850 | None:intergenic |
| GGGTTACACTAGACTGGTTG+TGG | 0.484518 | 2.1:-12561601 | MS.gene35750:CDS |
| ACTGCAAAGTATGGTGATCA+AGG | 0.485522 | 2.1:-12562005 | MS.gene35750:CDS |
| ATTGGTATATGTGCAATTAG+TGG | 0.486598 | 2.1:-12563606 | MS.gene35750:CDS |
| ATGTTACAGTCTTTCCTATG+TGG | 0.489292 | 2.1:-12563045 | MS.gene35750:intron |
| TCAGCTGATCTTGCAGCTGG+TGG | 0.503591 | 2.1:-12562621 | MS.gene35750:CDS |
| AAAGACATCCATTGCCAAGA+AGG | 0.509411 | 2.1:+12564213 | None:intergenic |
| GTTTCAGCTGATCTTGCAGC+TGG | 0.510600 | 2.1:-12562624 | MS.gene35750:CDS |
| GTGTTCCAACTGCAAATGGC+TGG | 0.520973 | 2.1:+12563854 | None:intergenic |
| TGTAATTAACCTTAAAGCAG+AGG | 0.522589 | 2.1:+12562999 | None:intergenic |
| TTGCAGGGGTTACACTAGAC+TGG | 0.523837 | 2.1:-12561607 | MS.gene35750:CDS |
| ATTTCAAGAATTTCAAGAGT+GGG | 0.530371 | 2.1:+12562096 | None:intergenic |
| GATTTAGCAACATCTGGTAA+AGG | 0.531613 | 2.1:-12563645 | MS.gene35750:CDS |
| ACATCTGGTAAAGGAGGACT+TGG | 0.542893 | 2.1:-12563636 | MS.gene35750:CDS |
| ACAAACAGTGAGGTAACCAT+TGG | 0.544603 | 2.1:+12561947 | None:intergenic |
| ACAAGAGAGGAAGGGAAACA+AGG | 0.545216 | 2.1:-12562469 | MS.gene35750:CDS |
| TTTGCAGTGAAATAAAATGC+TGG | 0.546823 | 2.1:+12562020 | None:intergenic |
| GCATAAACCTCTAGACGTGT+TGG | 0.547583 | 2.1:+12564356 | None:intergenic |
| GTTGCAGATGCTCATGTTCA+AGG | 0.549362 | 2.1:-12563573 | MS.gene35750:CDS |
| TGTGGTTGATAGGCAAAGGT+TGG | 0.549746 | 2.1:-12561583 | MS.gene35750:CDS |
| CAAAGTATGGTGATCAAGGT+TGG | 0.550801 | 2.1:-12562001 | MS.gene35750:CDS |
| GCATTTGATAATTCTAAGGA+TGG | 0.554074 | 2.1:-12562970 | MS.gene35750:CDS |
| TCATTCTTGGGGCTATCCAA+TGG | 0.554884 | 2.1:-12561963 | MS.gene35750:CDS |
| TGCACACAAACAAGAGAGGA+AGG | 0.556796 | 2.1:-12562478 | MS.gene35750:CDS |
| TTGGTGTTGTTTCTACTAGG+AGG | 0.562464 | 2.1:-12561635 | MS.gene35750:CDS |
| GTATACCAGCCATTTGCAGT+TGG | 0.574201 | 2.1:-12563859 | MS.gene35750:CDS |
| TAAACCTCTAGACGTGTTGG+AGG | 0.581439 | 2.1:+12564359 | None:intergenic |
| AGCATCAGAAGGATCCAAAA+CGG | 0.581586 | 2.1:-12562646 | MS.gene35750:CDS |
| TAATGTTGACATCATTCTTG+GGG | 0.600627 | 2.1:-12561974 | MS.gene35750:CDS |
| AATGAATTCTGGCTTCATGT+AGG | 0.600985 | 2.1:+12563530 | None:intergenic |
| TGAGCCTCCAACACGTCTAG+AGG | 0.604316 | 2.1:-12564363 | MS.gene35750:intron |
| AATTTCAAGAATTTCAAGAG+TGG | 0.605836 | 2.1:+12562095 | None:intergenic |
| TTAGCAACATCTGGTAAAGG+AGG | 0.617570 | 2.1:-12563642 | MS.gene35750:CDS |
| CAGATGCTGCCAAACCACAT+AGG | 0.618573 | 2.1:+12563031 | None:intergenic |
| TAATTGCAATGTACAATGTG+TGG | 0.621011 | 2.1:-12562139 | MS.gene35750:CDS |
| CGTACAAAAGCAGCATCAGA+AGG | 0.622959 | 2.1:-12562657 | MS.gene35750:CDS |
| ATGAGCATCTGCAACTCCAA+AGG | 0.623544 | 2.1:+12563581 | None:intergenic |
| AAATGCTTTGGGAAACCTGT+TGG | 0.630835 | 2.1:-12561654 | MS.gene35750:CDS |
| AATTGCAATGTACAATGTGT+GGG | 0.632930 | 2.1:-12562138 | MS.gene35750:CDS |
| GTTATGACATCTGCACCCAA+AGG | 0.634499 | 2.1:-12561924 | MS.gene35750:CDS |
| TGGAGGCTCAACGTTGACCA+TGG | 0.638186 | 2.1:+12564376 | None:intergenic |
| TATCTTCAGACAGAAATCCA+GGG | 0.655976 | 2.1:+12562376 | None:intergenic |
| ACAAGTGTAAGCACCCTGGA+GGG | 0.662948 | 2.1:+12563880 | None:intergenic |
| GTATACAAGTGTAAGCACCC+TGG | 0.665189 | 2.1:+12563876 | None:intergenic |
| GAGCACATAGTTTAGGAACA+TGG | 0.666302 | 2.1:-12562350 | MS.gene35750:intron |
| TGGTTGTGGTTGATAGGCAA+AGG | 0.669026 | 2.1:-12561587 | MS.gene35750:CDS |
| GCACACAAACAAGAGAGGAA+GGG | 0.670991 | 2.1:-12562477 | MS.gene35750:CDS |
| ATCATGCACACAAACAAGAG+AGG | 0.673529 | 2.1:-12562482 | MS.gene35750:CDS |
| TACAAGTGTAAGCACCCTGG+AGG | 0.676424 | 2.1:+12563879 | None:intergenic |
| GCAGAATTATCATCCCTCCA+GGG | 0.701785 | 2.1:-12563893 | MS.gene35750:intron |
| GCAGATGCTCATGTTCAAGG+TGG | 0.722859 | 2.1:-12563570 | MS.gene35750:CDS |
| ATGTCATAACACAAACAGTG+AGG | 0.743595 | 2.1:+12561937 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTAAAATTATTAGCTTTTT+AGG | + | chr2.1:12562679-12562698 | None:intergenic | 10.0% |
| !! | AAAATTACCAAAGATTTAAA+AGG | + | chr2.1:12563648-12563667 | None:intergenic | 15.0% |
| !! | GAAATTATTATCACATTATA+AGG | + | chr2.1:12563435-12563454 | None:intergenic | 15.0% |
| !!! | AATAATTTTAATTTCTATGG+TGG | - | chr2.1:12562687-12562706 | MS.gene35750:CDS | 15.0% |
| !!! | ATTAGATGAAATTTTGATTA+TGG | + | chr2.1:12563063-12563082 | None:intergenic | 15.0% |
| !!! | GCTAATAATTTTAATTTCTA+TGG | - | chr2.1:12562684-12562703 | MS.gene35750:CDS | 15.0% |
| !!! | TTATGTTTTAATTTACTGTA+GGG | - | chr2.1:12564268-12564287 | MS.gene35750:intron | 15.0% |
| !!! | TTTATGTTTTAATTTACTGT+AGG | - | chr2.1:12564267-12564286 | MS.gene35750:intron | 15.0% |
| !!! | TTTCAATTTTTTGTTGTTAT+TGG | - | chr2.1:12561680-12561699 | MS.gene35750:intron | 15.0% |
| !! | AAAAAATAGTATATCCAAAC+AGG | + | chr2.1:12562175-12562194 | None:intergenic | 20.0% |
| !! | AAACCAAACATAACAATTTA+TGG | + | chr2.1:12562617-12562636 | None:intergenic | 20.0% |
| !! | ACATTAAATTACAACATACA+AGG | + | chr2.1:12561985-12562004 | None:intergenic | 20.0% |
| !! | ATCAAACATAAACGAAATTA+TGG | + | chr2.1:12562562-12562581 | None:intergenic | 20.0% |
| !! | ATTTGGATTTCATATAGTAT+AGG | + | chr2.1:12564236-12564255 | None:intergenic | 20.0% |
| !! | CATAAACATTAATGTGAATT+TGG | + | chr2.1:12564253-12564272 | None:intergenic | 20.0% |
| !! | CTAAATAGTATATAGAGTAA+TGG | + | chr2.1:12563156-12563175 | None:intergenic | 20.0% |
| !! | TATTATAGTGGTGTTTAATT+TGG | - | chr2.1:12564077-12564096 | MS.gene35750:intron | 20.0% |
| !! | TCCAACTACATTAAATTTAT+TGG | + | chr2.1:12562291-12562310 | None:intergenic | 20.0% |
| !! | TCCAATAAATTTAATGTAGT+TGG | - | chr2.1:12562287-12562306 | MS.gene35750:intron | 20.0% |
| !! | TTTATGTTTGATTCTATCTT+TGG | - | chr2.1:12562570-12562589 | MS.gene35750:intron | 20.0% |
| !! | TTTGGATTTCATATAGTATA+GGG | + | chr2.1:12564235-12564254 | None:intergenic | 20.0% |
| !!! | AGTTGTGCTTATAATTTTTT+AGG | - | chr2.1:12563779-12563798 | MS.gene35750:CDS | 20.0% |
| !!! | ATTTTACGTTCAATTAATTC+AGG | - | chr2.1:12562819-12562838 | MS.gene35750:intron | 20.0% |
| !!! | GATTTTTATCGATTTATGTT+AGG | + | chr2.1:12562768-12562787 | None:intergenic | 20.0% |
| !!! | TATTTACGCTTTAAGAATAT+TGG | + | chr2.1:12564206-12564225 | None:intergenic | 20.0% |
| !!! | TTTTTTCATAACCACTTTTT+TGG | - | chr2.1:12562190-12562209 | MS.gene35750:intron | 20.0% |
| ! | AACCTTAATTCCTTTACTTT+AGG | - | chr2.1:12562251-12562270 | MS.gene35750:intron | 25.0% |
| ! | AATTTCAAGAATTTCAAGAG+TGG | + | chr2.1:12563862-12563881 | None:intergenic | 25.0% |
| ! | ACTCTTGAAATTCTTGAAAT+TGG | - | chr2.1:12563861-12563880 | MS.gene35750:CDS | 25.0% |
| ! | ATAATGTTGACATCATTCTT+GGG | - | chr2.1:12563979-12563998 | MS.gene35750:intron | 25.0% |
| ! | ATCCTAAAGTAAAGGAATTA+AGG | + | chr2.1:12562256-12562275 | None:intergenic | 25.0% |
| ! | ATCTATGATACTTACATCTA+TGG | - | chr2.1:12562880-12562899 | MS.gene35750:intron | 25.0% |
| ! | ATTTCAAGAATTTCAAGAGT+GGG | + | chr2.1:12563861-12563880 | None:intergenic | 25.0% |
| ! | CAATAGCAACAAATAACAAT+TGG | + | chr2.1:12563110-12563129 | None:intergenic | 25.0% |
| ! | GAAAGAAATAGTACTTCTTT+AGG | + | chr2.1:12563372-12563391 | None:intergenic | 25.0% |
| ! | TACTATTAACACCAAAAAAG+TGG | + | chr2.1:12562204-12562223 | None:intergenic | 25.0% |
| ! | TATTCTTAAAGCGTAAATAC+CGG | - | chr2.1:12564207-12564226 | MS.gene35750:CDS | 25.0% |
| ! | TCAAAATCATCCTAAAGTAA+AGG | + | chr2.1:12562264-12562283 | None:intergenic | 25.0% |
| ! | TGACCATAAATTGTTATGTT+TGG | - | chr2.1:12562611-12562630 | MS.gene35750:CDS | 25.0% |
| ! | TGCTATATTGTCTTATAATG+AGG | - | chr2.1:12562124-12562143 | MS.gene35750:CDS | 25.0% |
| ! | TTACTACATTTACTTGTTTC+CGG | - | chr2.1:12561795-12561814 | MS.gene35750:intron | 25.0% |
| !! | GATAATAATTTCCCTTTTTC+AGG | - | chr2.1:12563443-12563462 | MS.gene35750:intron | 25.0% |
| !! | TACTTCACAATTGGTATTTT+AGG | + | chr2.1:12563273-12563292 | None:intergenic | 25.0% |
| !! | TCGCAATTTAGAACTATAAT+CGG | + | chr2.1:12562463-12562482 | None:intergenic | 25.0% |
| !! | TGTTGTTATTGGTATTCATA+GGG | - | chr2.1:12561691-12561710 | MS.gene35750:intron | 25.0% |
| !! | TTGTTGTTATTGGTATTCAT+AGG | - | chr2.1:12561690-12561709 | MS.gene35750:intron | 25.0% |
| !!! | GTTAATTCTGAAGTTTGATT+AGG | + | chr2.1:12561926-12561945 | None:intergenic | 25.0% |
| !!! | TTTTATTTCACTGCAAAGTA+TGG | - | chr2.1:12563940-12563959 | MS.gene35750:intron | 25.0% |
| AAAGTAGACCAATTACTTAC+CGG | + | chr2.1:12561817-12561836 | None:intergenic | 30.0% | |
| AAGCTCAAAGAATGTTGATA+TGG | + | chr2.1:12563220-12563239 | None:intergenic | 30.0% | |
| AATTGCAATGTACAATGTGT+GGG | - | chr2.1:12563816-12563835 | MS.gene35750:CDS | 30.0% | |
| ACCACTATAATATACTCTCA+AGG | + | chr2.1:12564069-12564088 | None:intergenic | 30.0% | |
| AGTGGTTGTTCAATCAAAAT+CGG | - | chr2.1:12564145-12564164 | MS.gene35750:intron | 30.0% | |
| ATTGGTATATGTGCAATTAG+TGG | - | chr2.1:12562348-12562367 | MS.gene35750:intron | 30.0% | |
| CAAAAGTCAATACTAGATTC+AGG | - | chr2.1:12562147-12562166 | MS.gene35750:CDS | 30.0% | |
| GATAATGTTGACATCATTCT+TGG | - | chr2.1:12563978-12563997 | MS.gene35750:intron | 30.0% | |
| TAATGTTGACATCATTCTTG+GGG | - | chr2.1:12563980-12563999 | MS.gene35750:intron | 30.0% | |
| TAATTGCAATGTACAATGTG+TGG | - | chr2.1:12563815-12563834 | MS.gene35750:CDS | 30.0% | |
| TCTAGAGGTTTATGCTTAAT+TGG | - | chr2.1:12561606-12561625 | MS.gene35750:CDS | 30.0% | |
| TGTAATTAACCTTAAAGCAG+AGG | + | chr2.1:12562958-12562977 | None:intergenic | 30.0% | |
| TTACCAAAGATTTAAAAGGC+AGG | + | chr2.1:12563644-12563663 | None:intergenic | 30.0% | |
| TTCATTTAGATTCTGTGATG+AGG | - | chr2.1:12563082-12563101 | MS.gene35750:intron | 30.0% | |
| TTTATCTACAGCAATCCATT+AGG | + | chr2.1:12563724-12563743 | None:intergenic | 30.0% | |
| TTTCATATAGTATAGGGATC+CGG | + | chr2.1:12564229-12564248 | None:intergenic | 30.0% | |
| TTTCTGAGTGAAGTAGTTAT+TGG | - | chr2.1:12561883-12561902 | MS.gene35750:intron | 30.0% | |
| TTTGCAGTGAAATAAAATGC+TGG | + | chr2.1:12563937-12563956 | None:intergenic | 30.0% | |
| ! | ACCTTGAGAGTATATTATAG+TGG | - | chr2.1:12564065-12564084 | MS.gene35750:intron | 30.0% |
| ! | AGAGTGTCAATGCATAAATT+AGG | + | chr2.1:12563551-12563570 | None:intergenic | 30.0% |
| ! | AGCAGCATTTGATAATTCTA+AGG | - | chr2.1:12562980-12562999 | MS.gene35750:CDS | 30.0% |
| ! | GCATTTGATAATTCTAAGGA+TGG | - | chr2.1:12562984-12563003 | MS.gene35750:CDS | 30.0% |
| ! | GTACTTCTTTAGGTATTGTT+TGG | + | chr2.1:12563362-12563381 | None:intergenic | 30.0% |
| ! | TTTTGTATCCATACATCTGT+CGG | + | chr2.1:12562725-12562744 | None:intergenic | 30.0% |
| !! | AATTCTGAAGTTTGATTAGG+AGG | + | chr2.1:12561923-12561942 | None:intergenic | 30.0% |
| !! | TTACGCTTTAAGAATATTGG+TGG | + | chr2.1:12564203-12564222 | None:intergenic | 30.0% |
| ACTTGTTTCCGGTAAGTAAT+TGG | - | chr2.1:12561806-12561825 | MS.gene35750:intron | 35.0% | |
| ATATTGGTATGCTTCCTTCT+TGG | - | chr2.1:12561727-12561746 | MS.gene35750:intron | 35.0% | |
| ATGATCCTCATCCTGAAAAA+GGG | + | chr2.1:12563457-12563476 | None:intergenic | 35.0% | |
| ATGTCATAACACAAACAGTG+AGG | + | chr2.1:12564020-12564039 | None:intergenic | 35.0% | |
| ATGTTACAGTCTTTCCTATG+TGG | - | chr2.1:12562909-12562928 | MS.gene35750:intron | 35.0% | |
| ATTCAATTCCGACAGATGTA+TGG | - | chr2.1:12562714-12562733 | MS.gene35750:CDS | 35.0% | |
| CTTCACTCAGAAATCAAACT+CGG | + | chr2.1:12561876-12561895 | None:intergenic | 35.0% | |
| GATTTAGCAACATCTGGTAA+AGG | - | chr2.1:12562309-12562328 | MS.gene35750:intron | 35.0% | |
| GCGATTCATAATTGCAATTG+TGG | - | chr2.1:12562479-12562498 | MS.gene35750:CDS | 35.0% | |
| GGGAAAATATGCTGCAATAT+TGG | - | chr2.1:12561711-12561730 | MS.gene35750:intron | 35.0% | |
| TAAGCGTGAGTTTGATTATG+CGG | + | chr2.1:12562861-12562880 | None:intergenic | 35.0% | |
| TACAATGTGTGGGATCTAAT+AGG | - | chr2.1:12563826-12563845 | MS.gene35750:CDS | 35.0% | |
| TAGTTGGATTTAGCAACATC+TGG | - | chr2.1:12562303-12562322 | MS.gene35750:intron | 35.0% | |
| TATCTTCAGACAGAAATCCA+GGG | + | chr2.1:12563581-12563600 | None:intergenic | 35.0% | |
| TTCACTCAGAAATCAAACTC+GGG | + | chr2.1:12561875-12561894 | None:intergenic | 35.0% | |
| ! | CTACCTGCCTTTTAAATCTT+TGG | - | chr2.1:12563638-12563657 | MS.gene35750:CDS | 35.0% |
| ! | TAATTTGGAACTGGCTTACT+GGG | - | chr2.1:12564092-12564111 | MS.gene35750:intron | 35.0% |
| ! | TCTAAGGATGGTCTTAGAAA+AGG | - | chr2.1:12562996-12563015 | MS.gene35750:CDS | 35.0% |
| ! | TTAATTTGGAACTGGCTTAC+TGG | - | chr2.1:12564091-12564110 | MS.gene35750:intron | 35.0% |
| ! | TTTTACGAATCGAAACGACA+AGG | - | chr2.1:12563691-12563710 | MS.gene35750:intron | 35.0% |
| !! | AATGAATTCTGGCTTCATGT+AGG | + | chr2.1:12562427-12562446 | None:intergenic | 35.0% |
| !! | AGTGGTGTTTAATTTGGAAC+TGG | - | chr2.1:12564083-12564102 | MS.gene35750:intron | 35.0% |
| !! | TTTCCCAAAGCATTTTGTTC+TGG | + | chr2.1:12564295-12564314 | None:intergenic | 35.0% |
| !!! | AATTTCCCTTTTTCAGGATG+AGG | - | chr2.1:12563449-12563468 | MS.gene35750:intron | 35.0% |
| !!! | TACTAGGAGGTATTTTTGCA+GGG | - | chr2.1:12564332-12564351 | MS.gene35750:intron | 35.0% |
| AAAGACATCCATTGCCAAGA+AGG | + | chr2.1:12561744-12561763 | None:intergenic | 40.0% | |
| ACAAACAGTGAGGTAACCAT+TGG | + | chr2.1:12564010-12564029 | None:intergenic | 40.0% | |
| ACAGTCTTTCCTATGTGGTT+TGG | - | chr2.1:12562914-12562933 | MS.gene35750:intron | 40.0% | |
| ACTAGATTCAGGAACCTGTT+TGG | - | chr2.1:12562158-12562177 | MS.gene35750:intron | 40.0% | |
| ACTGCAAAGTATGGTGATCA+AGG | - | chr2.1:12563949-12563968 | MS.gene35750:intron | 40.0% | |
| AGCATCAGAAGGATCCAAAA+CGG | - | chr2.1:12563308-12563327 | MS.gene35750:intron | 40.0% | |
| AGGTCTCACCTTATAACCTT+TGG | + | chr2.1:12564049-12564068 | None:intergenic | 40.0% | |
| ATATCTCGAATGCGTGAATG+CGG | + | chr2.1:12564124-12564143 | None:intergenic | 40.0% | |
| ATCATGCACACAAACAAGAG+AGG | - | chr2.1:12563472-12563491 | MS.gene35750:intron | 40.0% | |
| ATCTGCACCCAAAGGTTATA+AGG | - | chr2.1:12564038-12564057 | MS.gene35750:intron | 40.0% | |
| CAAAGTATGGTGATCAAGGT+TGG | - | chr2.1:12563953-12563972 | MS.gene35750:intron | 40.0% | |
| CATGAAGCCAGAATTCATTC+AGG | - | chr2.1:12562428-12562447 | MS.gene35750:CDS | 40.0% | |
| CATGATCCTCATCCTGAAAA+AGG | + | chr2.1:12563458-12563477 | None:intergenic | 40.0% | |
| CATGTTCAAGGTGGAATGAT+TGG | - | chr2.1:12562393-12562412 | MS.gene35750:CDS | 40.0% | |
| CTAGTAGAAACAACACCAAC+AGG | + | chr2.1:12564318-12564337 | None:intergenic | 40.0% | |
| GAGCACATAGTTTAGGAACA+TGG | - | chr2.1:12563604-12563623 | MS.gene35750:CDS | 40.0% | |
| GATACTGGAGCACATAGTTT+AGG | - | chr2.1:12563597-12563616 | MS.gene35750:CDS | 40.0% | |
| GGATTTCTGTCTGAAGATAC+TGG | - | chr2.1:12563582-12563601 | MS.gene35750:CDS | 40.0% | |
| GGTCCAGAACAAAATGCTTT+GGG | - | chr2.1:12564289-12564308 | MS.gene35750:intron | 40.0% | |
| GGTCTCACCTTATAACCTTT+GGG | + | chr2.1:12564048-12564067 | None:intergenic | 40.0% | |
| GTACGGTAGTACTTCACAAT+TGG | + | chr2.1:12563282-12563301 | None:intergenic | 40.0% | |
| GTATCTTCAGACAGAAATCC+AGG | + | chr2.1:12563582-12563601 | None:intergenic | 40.0% | |
| GTGCATTAACCTCTGCTTTA+AGG | - | chr2.1:12562946-12562965 | MS.gene35750:intron | 40.0% | |
| TACAGCAATCCATTAGGAGT+TGG | + | chr2.1:12563718-12563737 | None:intergenic | 40.0% | |
| TAGCTGACCTGAATGAATTC+TGG | + | chr2.1:12562438-12562457 | None:intergenic | 40.0% | |
| TTAGCAACATCTGGTAAAGG+AGG | - | chr2.1:12562312-12562331 | MS.gene35750:intron | 40.0% | |
| ! | AAGATCAGCTGAAACCGTTT+TGG | + | chr2.1:12563325-12563344 | None:intergenic | 40.0% |
| ! | AATTTGGAACTGGCTTACTG+GGG | - | chr2.1:12564093-12564112 | MS.gene35750:intron | 40.0% |
| ! | CTGCATTTTACGCGATATCA+AGG | - | chr2.1:12562511-12562530 | MS.gene35750:intron | 40.0% |
| ! | GCAATGGATGTCTTTTCTCT+TGG | - | chr2.1:12561749-12561768 | MS.gene35750:intron | 40.0% |
| ! | GGAGGACTTGGAACTTTTAT+TGG | - | chr2.1:12562330-12562349 | MS.gene35750:intron | 40.0% |
| ! | TCAAACTCGGGTCTTATGAA+AGG | + | chr2.1:12561863-12561882 | None:intergenic | 40.0% |
| ! | TTGACACTCTCTATTTTCCC+TGG | - | chr2.1:12563561-12563580 | MS.gene35750:CDS | 40.0% |
| !! | AAATGCTTTGGGAAACCTGT+TGG | - | chr2.1:12564300-12564319 | MS.gene35750:intron | 40.0% |
| !! | CTGTTGGTGTTGTTTCTACT+AGG | - | chr2.1:12564316-12564335 | MS.gene35750:intron | 40.0% |
| !! | TTGGTGTTGTTTCTACTAGG+AGG | - | chr2.1:12564319-12564338 | MS.gene35750:intron | 40.0% |
| !!! | ACCGTTCGGTTTTGATTGAA+CGG | - | chr2.1:12564177-12564196 | MS.gene35750:CDS | 40.0% |
| !!! | ACTAGGAGGTATTTTTGCAG+GGG | - | chr2.1:12564333-12564352 | MS.gene35750:intron | 40.0% |
| !!! | CTACTAGGAGGTATTTTTGC+AGG | - | chr2.1:12564331-12564350 | MS.gene35750:intron | 40.0% |
| !!! | CTTCTGATGCTGCTTTTGTA+CGG | + | chr2.1:12563299-12563318 | None:intergenic | 40.0% |
| ACAAGAGAGGAAGGGAAACA+AGG | - | chr2.1:12563485-12563504 | MS.gene35750:intron | 45.0% | |
| ACATCTGGTAAAGGAGGACT+TGG | - | chr2.1:12562318-12562337 | MS.gene35750:intron | 45.0% | |
| ATCGGATAGTCTAGACCGTT+CGG | - | chr2.1:12564163-12564182 | MS.gene35750:CDS | 45.0% | |
| ATGAGCATCTGCAACTCCAA+AGG | + | chr2.1:12562376-12562395 | None:intergenic | 45.0% | |
| CGTACAAAAGCAGCATCAGA+AGG | - | chr2.1:12563297-12563316 | MS.gene35750:intron | 45.0% | |
| GCAAGTGTTCCAACTGCAAA+TGG | + | chr2.1:12562107-12562126 | None:intergenic | 45.0% | |
| GCACACAAACAAGAGAGGAA+GGG | - | chr2.1:12563477-12563496 | MS.gene35750:intron | 45.0% | |
| GCAGAATTATCATCCCTCCA+GGG | - | chr2.1:12562061-12562080 | MS.gene35750:CDS | 45.0% | |
| GCATAAACCTCTAGACGTGT+TGG | + | chr2.1:12561601-12561620 | None:intergenic | 45.0% | |
| GCCGTTCAATCAAAACCGAA+CGG | + | chr2.1:12564181-12564200 | None:intergenic | 45.0% | |
| GGGTCCAGAACAAAATGCTT+TGG | - | chr2.1:12564288-12564307 | MS.gene35750:intron | 45.0% | |
| GTATACAAGTGTAAGCACCC+TGG | + | chr2.1:12562081-12562100 | None:intergenic | 45.0% | |
| GTATACCAGCCATTTGCAGT+TGG | - | chr2.1:12562095-12562114 | MS.gene35750:CDS | 45.0% | |
| GTATGCTTCCTTCTTGGCAA+TGG | - | chr2.1:12561733-12561752 | MS.gene35750:intron | 45.0% | |
| GTTATGACATCTGCACCCAA+AGG | - | chr2.1:12564030-12564049 | MS.gene35750:intron | 45.0% | |
| GTTGCAGATGCTCATGTTCA+AGG | - | chr2.1:12562381-12562400 | MS.gene35750:CDS | 45.0% | |
| TAAACCTCTAGACGTGTTGG+AGG | + | chr2.1:12561598-12561617 | None:intergenic | 45.0% | |
| TATCTCGAATGCGTGAATGC+GGG | + | chr2.1:12564123-12564142 | None:intergenic | 45.0% | |
| TCACGCATTCGAGATATCAG+TGG | - | chr2.1:12564127-12564146 | MS.gene35750:intron | 45.0% | |
| TCATTCTTGGGGCTATCCAA+TGG | - | chr2.1:12563991-12564010 | MS.gene35750:intron | 45.0% | |
| TGCACACAAACAAGAGAGGA+AGG | - | chr2.1:12563476-12563495 | MS.gene35750:intron | 45.0% | |
| TGCAGAATTATCATCCCTCC+AGG | - | chr2.1:12562060-12562079 | MS.gene35750:CDS | 45.0% | |
| TGTGCAATTAGTGGTGCCTT+TGG | - | chr2.1:12562357-12562376 | MS.gene35750:CDS | 45.0% | |
| ! | CTAGACTGGTTGTGGTTGAT+AGG | - | chr2.1:12564361-12564380 | MS.gene35750:intron | 45.0% |
| !! | TGGTTGTGGTTGATAGGCAA+AGG | - | chr2.1:12564367-12564386 | MS.gene35750:CDS | 45.0% |
| !! | TGTGGTTGATAGGCAAAGGT+TGG | - | chr2.1:12564371-12564390 | MS.gene35750:CDS | 45.0% |
| !!! | AATTTGAAATTAAAATAAAA+TGG | + | chr2.1:12563672-12563691 | None:intergenic | 5.0% |
| ACAAGTGTAAGCACCCTGGA+GGG | + | chr2.1:12562077-12562096 | None:intergenic | 50.0% | |
| CAGATGCTGCCAAACCACAT+AGG | + | chr2.1:12562926-12562945 | None:intergenic | 50.0% | |
| CGACAAGGACCAACTCCTAA+TGG | - | chr2.1:12563706-12563725 | MS.gene35750:intron | 50.0% | |
| GCAGATGCTCATGTTCAAGG+TGG | - | chr2.1:12562384-12562403 | MS.gene35750:CDS | 50.0% | |
| GTGTTCCAACTGCAAATGGC+TGG | + | chr2.1:12562103-12562122 | None:intergenic | 50.0% | |
| GTTTCAGCTGATCTTGCAGC+TGG | - | chr2.1:12563330-12563349 | MS.gene35750:intron | 50.0% | |
| TACAAGTGTAAGCACCCTGG+AGG | + | chr2.1:12562078-12562097 | None:intergenic | 50.0% | |
| TTGCAGGGGTTACACTAGAC+TGG | - | chr2.1:12564347-12564366 | MS.gene35750:intron | 50.0% | |
| ! | CTATGTGGTTTGGCAGCATC+TGG | - | chr2.1:12562924-12562943 | MS.gene35750:intron | 50.0% |
| ! | GGGTTACACTAGACTGGTTG+TGG | - | chr2.1:12564353-12564372 | MS.gene35750:intron | 50.0% |
| TCAGCTGATCTTGCAGCTGG+TGG | - | chr2.1:12563333-12563352 | MS.gene35750:intron | 55.0% | |
| TGAGCCTCCAACACGTCTAG+AGG | - | chr2.1:12561591-12561610 | MS.gene35750:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.1 | gene | 12561580 | 12564396 | 12561580 | ID=MS.gene35750 |
| chr2.1 | mRNA | 12561580 | 12564396 | 12561580 | ID=MS.gene35750.t1;Parent=MS.gene35750 |
| chr2.1 | exon | 12564364 | 12564396 | 12564364 | ID=MS.gene35750.t1.exon1;Parent=MS.gene35750.t1 |
| chr2.1 | CDS | 12564364 | 12564396 | 12564364 | ID=cds.MS.gene35750.t1;Parent=MS.gene35750.t1 |
| chr2.1 | exon | 12564160 | 12564264 | 12564160 | ID=MS.gene35750.t1.exon2;Parent=MS.gene35750.t1 |
| chr2.1 | CDS | 12564160 | 12564264 | 12564160 | ID=cds.MS.gene35750.t1;Parent=MS.gene35750.t1 |
| chr2.1 | exon | 12563756 | 12563911 | 12563756 | ID=MS.gene35750.t1.exon3;Parent=MS.gene35750.t1 |
| chr2.1 | CDS | 12563756 | 12563911 | 12563756 | ID=cds.MS.gene35750.t1;Parent=MS.gene35750.t1 |
| chr2.1 | exon | 12563527 | 12563670 | 12563527 | ID=MS.gene35750.t1.exon4;Parent=MS.gene35750.t1 |
| chr2.1 | CDS | 12563527 | 12563670 | 12563527 | ID=cds.MS.gene35750.t1;Parent=MS.gene35750.t1 |
| chr2.1 | exon | 12562953 | 12563058 | 12562953 | ID=MS.gene35750.t1.exon5;Parent=MS.gene35750.t1 |
| chr2.1 | CDS | 12562953 | 12563058 | 12562953 | ID=cds.MS.gene35750.t1;Parent=MS.gene35750.t1 |
| chr2.1 | exon | 12562599 | 12562771 | 12562599 | ID=MS.gene35750.t1.exon6;Parent=MS.gene35750.t1 |
| chr2.1 | CDS | 12562599 | 12562771 | 12562599 | ID=cds.MS.gene35750.t1;Parent=MS.gene35750.t1 |
| chr2.1 | exon | 12562351 | 12562511 | 12562351 | ID=MS.gene35750.t1.exon7;Parent=MS.gene35750.t1 |
| chr2.1 | CDS | 12562351 | 12562511 | 12562351 | ID=cds.MS.gene35750.t1;Parent=MS.gene35750.t1 |
| chr2.1 | exon | 12561917 | 12562175 | 12561917 | ID=MS.gene35750.t1.exon8;Parent=MS.gene35750.t1 |
| chr2.1 | CDS | 12561917 | 12562175 | 12561917 | ID=cds.MS.gene35750.t1;Parent=MS.gene35750.t1 |
| chr2.1 | exon | 12561580 | 12561687 | 12561580 | ID=MS.gene35750.t1.exon9;Parent=MS.gene35750.t1 |
| chr2.1 | CDS | 12561580 | 12561687 | 12561580 | ID=cds.MS.gene35750.t1;Parent=MS.gene35750.t1 |
| Gene Sequence |
| Protein sequence |
