AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene45316


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene45316.t1 MTR_0008s0170 97.506 401 10 0 1 401 1 401 0.0 786
MS.gene45316.t1 MTR_0008s0130 80.549 401 78 0 1 401 1 401 0.0 671
MS.gene45316.t1 MTR_4g050990 82.294 401 71 0 1 401 1 401 0.0 657
MS.gene45316.t1 MTR_2g089520 82.294 401 71 0 1 401 1 401 0.0 657
MS.gene45316.t1 MTR_2g047968 80.519 385 75 0 4 388 4 388 0.0 620
MS.gene45316.t1 MTR_2g011600 68.922 399 122 1 7 403 14 412 0.0 551
MS.gene45316.t1 MTR_1g071120 76.504 349 73 3 11 358 53 393 0.0 535
MS.gene45316.t1 MTR_2g011580 69.730 370 111 1 34 402 1 370 0.0 525
MS.gene45316.t1 MTR_2g011600 67.131 359 116 1 47 403 3 361 2.54e-169 479
MS.gene45316.t1 MTR_8g007285 57.910 335 139 1 52 384 2 336 8.39e-133 386
MS.gene45316.t1 MTR_0003s0470 32.587 402 243 8 11 403 26 408 4.02e-55 188
MS.gene45316.t1 MTR_3g462280 30.769 403 249 9 11 403 34 416 1.22e-45 163
MS.gene45316.t1 MTR_4g114710 27.885 416 257 9 1 403 6 391 1.91e-38 143
MS.gene45316.t1 MTR_2g011540 51.852 135 58 1 52 179 2 136 8.58e-37 132
MS.gene45316.t1 MTR_2g011530 69.565 92 27 1 278 368 2 93 2.78e-35 126
MS.gene45316.t1 MTR_2g011560 36.842 152 40 3 177 323 17 117 4.75e-17 77.4
MS.gene45316.t1 MTR_2g011570 50.769 65 25 1 137 201 1 58 1.97e-12 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene45316.t1 AT4G05120 69.424 399 121 1 3 401 6 403 0.0 578
MS.gene45316.t1 AT4G05120 69.424 399 121 1 3 401 6 403 0.0 578
MS.gene45316.t1 AT4G05110 65.163 399 138 1 3 401 6 403 0.0 540
MS.gene45316.t1 AT4G05110 65.163 399 138 1 3 401 6 403 0.0 539
MS.gene45316.t1 AT4G05110 65.163 399 138 1 3 401 6 403 0.0 539
MS.gene45316.t1 AT4G05140 63.659 399 145 0 3 401 6 404 0.0 538
MS.gene45316.t1 AT4G05130 62.750 400 146 2 3 401 6 403 0.0 523
MS.gene45316.t1 AT3G09990 63.776 392 141 1 11 401 13 404 0.0 520
MS.gene45316.t1 AT1G61630 60.401 399 157 1 4 401 5 403 1.80e-173 492
MS.gene45316.t1 AT1G70330 32.126 414 248 9 2 403 51 443 5.18e-53 184
MS.gene45316.t1 AT1G02630 28.462 390 238 8 22 403 26 382 3.67e-42 153
MS.gene45316.t1 AT1G02630 29.688 192 133 2 22 212 26 216 3.21e-23 100

Find 89 sgRNAs with CRISPR-Local

Find 189 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTCACCTTATAGCCTTTC+GGG 0.166232 4.3:-53533376 None:intergenic
AGGAAATAAGCAATTGTTAT+TGG 0.204429 4.3:+53532442 MS.gene45316:CDS
ACAAGGAAGCGGATTCTATT+TGG 0.224058 4.3:+53531292 MS.gene45316:CDS
TACTTCACAATTGGTAATTT+AGG 0.225152 4.3:-53532213 None:intergenic
TTACTATGTTTATTTATTTC+CGG 0.229116 4.3:+53530835 MS.gene45316:CDS
TTCTTCACCTTATAGCCTTT+CGG 0.245719 4.3:-53533377 None:intergenic
GATAATGTTGACATCTTTCT+TGG 0.252333 4.3:+53533310 MS.gene45316:CDS
ATCTTGGTATTGTTTCTTCT+TGG 0.254429 4.3:+53533517 MS.gene45316:CDS
ATAATGGTTTGTTGGCTTCT+TGG 0.291167 4.3:+53530767 MS.gene45316:CDS
ATGCTGACCTGAACAAATTC+TGG 0.292956 4.3:-53531581 None:intergenic
AGCAATATTTGAAAATTCTA+AGG 0.295643 4.3:+53531911 MS.gene45316:CDS
CTTGGCGGTGCTGCAGCATC+AGG 0.325226 4.3:+53531855 MS.gene45316:CDS
TAATTGCTATGTATAATGTA+TGG 0.328838 4.3:+53533147 MS.gene45316:CDS
TGCATAGTTAGTGGTGCATT+TGG 0.338224 4.3:+53531503 MS.gene45316:CDS
GTTTGTTGGCTTCTTGGAAA+TGG 0.345493 4.3:+53530773 MS.gene45316:CDS
TTCTGCCCCGAAAGGCTATA+AGG 0.352392 4.3:+53533370 MS.gene45316:CDS
GGGAAAATATGCTGCAATAA+TGG 0.365738 4.3:+53530751 MS.gene45316:intron
TTGGTATTGTTTCTTCTTGG+AGG 0.389863 4.3:+53533520 MS.gene45316:CDS
ATAATGTTGACATCTTTCTT+GGG 0.400944 4.3:+53533311 MS.gene45316:CDS
TCAGCTGACCTTGCTGCAGC+TGG 0.400973 4.3:+53532276 MS.gene45316:CDS
GGAGGGATTGGAACATTCAT+TGG 0.406478 4.3:+53531476 MS.gene45316:CDS
AAATGCATTGGGAAATATCT+TGG 0.414446 4.3:+53533501 MS.gene45316:CDS
ACTGATCAAAATCTTGAAGT+TGG 0.417735 4.3:+53533193 MS.gene45316:CDS
CATGAATCCAGAATTTGTTC+AGG 0.422496 4.3:+53531574 MS.gene45316:CDS
GTATCTTCTGATAAGAATCC+AGG 0.425663 4.3:-53532524 None:intergenic
GAACGGTAGTACTTCACAAT+TGG 0.426412 4.3:-53532222 None:intergenic
TTATTGTTGTAGTCTTTCCT+TGG 0.427988 4.3:+53531837 MS.gene45316:intron
GTGCTCTAACATCGGCTTTG+AGG 0.429741 4.3:+53531877 MS.gene45316:CDS
TACAATTAAAACAGCCAAAA+CGG 0.430063 4.3:-53531335 None:intergenic
AAGGTCAGCTGAAACAGTTT+TGG 0.431717 4.3:-53532265 None:intergenic
TTTGTTGGCTTCTTGGAAAT+GGG 0.439029 4.3:+53530774 MS.gene45316:CDS
CATGCACAAGGAGGAATGAT+TGG 0.442301 4.3:+53531539 MS.gene45316:CDS
AAGCTCAAACAAGGTTGATA+AGG 0.443767 4.3:-53532160 None:intergenic
TAGTTGGATTTAGCAACATC+TGG 0.449427 4.3:+53531449 MS.gene45316:intron
ATGCTGCAATAATGGTTTGT+TGG 0.453042 4.3:+53530759 MS.gene45316:CDS
CTGACATTGTCTATATTCCC+TGG 0.457152 4.3:+53532506 MS.gene45316:CDS
TATAATGTATGGGATCTTAT+CGG 0.459552 4.3:+53533158 MS.gene45316:CDS
ATTGGTATATGCATAGTTAG+TGG 0.468620 4.3:+53531494 MS.gene45316:CDS
TTGTTGTAGTCTTTCCTTGG+CGG 0.468717 4.3:+53531840 MS.gene45316:intron
ACATCTGGTAAAGGAGGGAT+TGG 0.484610 4.3:+53531464 MS.gene45316:CDS
GATACCGGATTACACAGTTT+AGG 0.487502 4.3:+53532542 MS.gene45316:CDS
AATTGCTATGTATAATGTAT+GGG 0.488467 4.3:+53533148 MS.gene45316:CDS
GGGACCTGAACAAAATGCAT+TGG 0.488651 4.3:+53533489 MS.gene45316:intron
GTACTTCTCGAAATGAGGTC+TGG 0.497951 4.3:-53532302 None:intergenic
AGCAATTCTTACTTACTATG+AGG 0.505159 4.3:+53531258 MS.gene45316:CDS
GGACCTGAACAAAATGCATT+GGG 0.505661 4.3:+53533490 MS.gene45316:CDS
GCTAGTGTTCCAACTGCAAA+TGG 0.506628 4.3:-53531238 None:intergenic
ATCACCTCAATTCGTGGTGG+AGG 0.522623 4.3:-53530640 None:intergenic
TGCAGAAATATCATCCCTCT+AGG 0.522851 4.3:+53531194 MS.gene45316:intron
TCTGCGTATAAAGCTACAAA+AGG 0.524042 4.3:+53533775 MS.gene45316:CDS
GATTTAGCAACATCTGGTAA+AGG 0.531613 4.3:+53531455 MS.gene45316:CDS
AAACCGTACTTCTCGAAATG+AGG 0.538163 4.3:-53532307 None:intergenic
TGTGCCTAAACTGTGTAATC+CGG 0.542014 4.3:-53532546 None:intergenic
CAAAGTATGGTACTCAAGGT+TGG 0.542078 4.3:+53533285 MS.gene45316:CDS
ACAGACAGCGAGGTAGCCAT+TGG 0.547272 4.3:-53533339 None:intergenic
ATTCTGGATTCATGTATGAC+AGG 0.549368 4.3:-53531565 None:intergenic
TGAGCCTCCACCACGAATTG+AGG 0.549820 4.3:+53530636 MS.gene45316:CDS
GGATTCTTATCAGAAGATAC+CGG 0.550056 4.3:+53532527 MS.gene45316:CDS
CTGATGCTGCAGCACCGCCA+AGG 0.552472 4.3:-53531854 None:intergenic
GTATATCAGCCATTTGCAGT+TGG 0.555669 4.3:+53531229 MS.gene45316:CDS
TTAAAACAATTTGAGCGCAA+AGG 0.557575 4.3:+53532422 MS.gene45316:CDS
TCTTTCTTGGGGATATCCAA+TGG 0.562937 4.3:+53533323 MS.gene45316:CDS
TTTGCAGTGAAATAAAATGC+TGG 0.563621 4.3:-53533266 None:intergenic
ATATATATCACCTCAATTCG+TGG 0.564481 4.3:-53530646 None:intergenic
TAATGTTGACATCTTTCTTG+GGG 0.567874 4.3:+53533312 MS.gene45316:CDS
ACTGCAAAGTATGGTACTCA+AGG 0.567878 4.3:+53533281 MS.gene45316:CDS
GGTAGTAGCCACCACAACAT+AGG 0.568265 4.3:+53533796 MS.gene45316:CDS
AGCATCAGGTGCTCTAACAT+CGG 0.577110 4.3:+53531869 MS.gene45316:CDS
TTAGCAACATCTGGTAAAGG+AGG 0.580672 4.3:+53531458 MS.gene45316:CDS
CGTTCAAAAGCAGCATCCGA+AGG 0.583519 4.3:+53532240 MS.gene45316:CDS
TACAAGAGTAAGCACCCTAG+AGG 0.583761 4.3:-53531209 None:intergenic
ATATTTGAAAATTCTAAGGA+CGG 0.599191 4.3:+53531915 MS.gene45316:CDS
GTTCTCACTTCTGCCCCGAA+AGG 0.606657 4.3:+53533362 MS.gene45316:CDS
CTTCACCTTATAGCCTTTCG+GGG 0.611942 4.3:-53533375 None:intergenic
TAGCAACATCTGGTAAAGGA+GGG 0.612233 4.3:+53531459 MS.gene45316:CDS
AACACAAAGAAGCTCAAACA+AGG 0.615784 4.3:-53532169 None:intergenic
TTAGCAGATGCTCATGCACA+AGG 0.620251 4.3:+53531527 MS.gene45316:CDS
GCAGAAATATCATCCCTCTA+GGG 0.623345 4.3:+53531195 MS.gene45316:intron
TATCTTCTGATAAGAATCCA+GGG 0.624746 4.3:-53532523 None:intergenic
GTTCAAAAGCAGCATCCGAA+GGG 0.625870 4.3:+53532241 MS.gene45316:CDS
TTTAGTTGCCTATGTTGTGG+TGG 0.627226 4.3:-53533804 None:intergenic
GGGTTTAGTTGCCTATGTTG+TGG 0.627938 4.3:-53533807 None:intergenic
ACAAGAGTAAGCACCCTAGA+GGG 0.631895 4.3:-53531208 None:intergenic
TCTAAGGACGGACTTCGCAA+AGG 0.638434 4.3:+53531927 MS.gene45316:CDS
GATTACACAGTTTAGGCACA+TGG 0.648704 4.3:+53532549 MS.gene45316:CDS
TCTGGATTCCAGCTGCAGCA+AGG 0.649624 4.3:-53532284 None:intergenic
TATATCACCTCAATTCGTGG+TGG 0.676520 4.3:-53530643 None:intergenic
AAGTGAGAACACAGACAGCG+AGG 0.688797 4.3:-53533349 None:intergenic
GCAGATGCTCATGCACAAGG+AGG 0.707799 4.3:+53531530 MS.gene45316:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGTTAACAAAAAAATTAAC+AGG - chr4.3:53531364-53531383 None:intergenic 15.0%
!! TTACTATGTTTATTTATTTC+CGG + chr4.3:53530835-53530854 MS.gene45316:CDS 15.0%
!!! AAATTGATTTCTTTTAGTAT+CGG + chr4.3:53532051-53532070 MS.gene45316:intron 15.0%
!!! GTATGTTTTTTACTTTTTTA+GGG + chr4.3:53533469-53533488 MS.gene45316:intron 15.0%
!!! GTTTTAAATTCAAAAGTTTA+TGG - chr4.3:53532915-53532934 None:intergenic 15.0%
!!! TGTATGTTTTTTACTTTTTT+AGG + chr4.3:53533468-53533487 MS.gene45316:intron 15.0%
!! AAATTGAAATTTGAATGTGT+TGG - chr4.3:53532881-53532900 None:intergenic 20.0%
!! AATTGAAATTTGAATGTGTT+GGG - chr4.3:53532880-53532899 None:intergenic 20.0%
!! AATTGCTATGTATAATGTAT+GGG + chr4.3:53533148-53533167 MS.gene45316:CDS 20.0%
!! ACAAAATAAATGAGTGTAAA+AGG - chr4.3:53530959-53530978 None:intergenic 20.0%
!! AGCAATATTTGAAAATTCTA+AGG + chr4.3:53531911-53531930 MS.gene45316:CDS 20.0%
!! ATTTAAATAACTCTAAACCT+CGG - chr4.3:53533426-53533445 None:intergenic 20.0%
!! TAATTGCTATGTATAATGTA+TGG + chr4.3:53533147-53533166 MS.gene45316:CDS 20.0%
!! TCGTTAGTTATTACTTATTT+CGG - chr4.3:53532777-53532796 None:intergenic 20.0%
!! TTGATATTTCCATTTATTAC+AGG + chr4.3:53533111-53533130 MS.gene45316:intron 20.0%
!!! ATATTTGAAAATTCTAAGGA+CGG + chr4.3:53531915-53531934 MS.gene45316:CDS 20.0%
!!! TAAATTATTTTGCATTTGCA+GGG + chr4.3:53530731-53530750 MS.gene45316:intron 20.0%
!!! TTAAATTATTTTGCATTTGC+AGG + chr4.3:53530730-53530749 MS.gene45316:intron 20.0%
! ACAATGCTAACTTTGATATT+CGG + chr4.3:53531640-53531659 MS.gene45316:intron 25.0%
! AGGAAATAAGCAATTGTTAT+TGG + chr4.3:53532442-53532461 MS.gene45316:CDS 25.0%
! ATAATGTTGACATCTTTCTT+GGG + chr4.3:53533311-53533330 MS.gene45316:CDS 25.0%
! ATATCATTCCAATATCTATC+CGG - chr4.3:53532991-53533010 None:intergenic 25.0%
! GATTAACAAATACACATTTG+AGG + chr4.3:53532750-53532769 MS.gene45316:intron 25.0%
! TAACCAGAGTGAATATTTAA+CGG - chr4.3:53530901-53530920 None:intergenic 25.0%
! TACAATTAAAACAGCCAAAA+CGG - chr4.3:53531338-53531357 None:intergenic 25.0%
! TATAATGTATGGGATCTTAT+CGG + chr4.3:53533158-53533177 MS.gene45316:CDS 25.0%
! TGGATATCTTTATGAATTGT+AGG - chr4.3:53532079-53532098 None:intergenic 25.0%
! TGTATGTTCAATTTCAAAAC+TGG + chr4.3:53533088-53533107 MS.gene45316:intron 25.0%
! TTATTTAGTGATTGCAATTG+CGG + chr4.3:53531729-53531748 MS.gene45316:intron 25.0%
!! ACATATGCAACTCTTTTTAA+AGG + chr4.3:53531812-53531831 MS.gene45316:intron 25.0%
!! CTTTTCTTTTCAATTTCTCA+CGG + chr4.3:53532330-53532349 MS.gene45316:intron 25.0%
!! TACTTCACAATTGGTAATTT+AGG - chr4.3:53532216-53532235 None:intergenic 25.0%
!!! CACTCATTTATTTTGTAATC+TGG + chr4.3:53530963-53530982 MS.gene45316:intron 25.0%
!!! GAAGTATTCTAGTTTCTTAA+AGG - chr4.3:53533404-53533423 None:intergenic 25.0%
!!! GACTAATTTGTGTTTTTTTC+AGG + chr4.3:53532388-53532407 MS.gene45316:intron 25.0%
!!! TTTTATTTCACTGCAAAGTA+TGG + chr4.3:53533272-53533291 MS.gene45316:CDS 25.0%
AAAAGAGTTGCATATGTTGA+AGG - chr4.3:53531809-53531828 None:intergenic 30.0%
AAATGCATTGGGAAATATCT+TGG + chr4.3:53533501-53533520 MS.gene45316:CDS 30.0%
ACTGATCAAAATCTTGAAGT+TGG + chr4.3:53533193-53533212 MS.gene45316:CDS 30.0%
AGCAATTCTTACTTACTATG+AGG + chr4.3:53531258-53531277 MS.gene45316:CDS 30.0%
AGTATCCATCACATACATTT+AGG - chr4.3:53532656-53532675 None:intergenic 30.0%
ATATATATCACCTCAATTCG+TGG - chr4.3:53530649-53530668 None:intergenic 30.0%
ATGAGGCAAAAATCAATACA+AGG + chr4.3:53531275-53531294 MS.gene45316:CDS 30.0%
ATTCCTTCAAAATGTGCATT+TGG + chr4.3:53531386-53531405 MS.gene45316:intron 30.0%
ATTCTATCTGTTTGTGAATG+AGG - chr4.3:53533631-53533650 None:intergenic 30.0%
ATTGGTATATGCATAGTTAG+TGG + chr4.3:53531494-53531513 MS.gene45316:CDS 30.0%
CAAAAATCAATACAAGGAAG+CGG + chr4.3:53531281-53531300 MS.gene45316:CDS 30.0%
CAAACTGAATCTCAATAGTA+AGG - chr4.3:53532361-53532380 None:intergenic 30.0%
CGAAAATGAAAAACATCTCT+CGG + chr4.3:53532693-53532712 MS.gene45316:intron 30.0%
CTAAAAAGAACCAAGAACAA+AGG - chr4.3:53532601-53532620 None:intergenic 30.0%
GATAATGTTGACATCTTTCT+TGG + chr4.3:53533310-53533329 MS.gene45316:CDS 30.0%
GTATCCATCACATACATTTA+GGG - chr4.3:53532655-53532674 None:intergenic 30.0%
TAAATATTCACTCTGGTTAG+CGG + chr4.3:53530902-53530921 MS.gene45316:intron 30.0%
TAATGTTGACATCTTTCTTG+GGG + chr4.3:53533312-53533331 MS.gene45316:CDS 30.0%
TACAGCAGACATAATAAAAG+TGG - chr4.3:53531048-53531067 None:intergenic 30.0%
TATCCGTTAAATATTCACTC+TGG + chr4.3:53530895-53530914 MS.gene45316:intron 30.0%
TATCTTCTGATAAGAATCCA+GGG - chr4.3:53532526-53532545 None:intergenic 30.0%
TATGGTTAATAGGTAAAGGA+TGG + chr4.3:53533572-53533591 MS.gene45316:intron 30.0%
TCAGAAAGTAGATACATTAC+CGG - chr4.3:53530857-53530876 None:intergenic 30.0%
TGGTTATGGTTAATAGGTAA+AGG + chr4.3:53533568-53533587 MS.gene45316:intron 30.0%
TTAAAACAATTTGAGCGCAA+AGG + chr4.3:53532422-53532441 MS.gene45316:CDS 30.0%
TTATTGTTGTAGTCTTTCCT+TGG + chr4.3:53531837-53531856 MS.gene45316:intron 30.0%
TTCCTTCAAAATGTGCATTT+GGG + chr4.3:53531387-53531406 MS.gene45316:intron 30.0%
TTTGCAGTGAAATAAAATGC+TGG - chr4.3:53533269-53533288 None:intergenic 30.0%
! ATCTTGGTATTGTTTCTTCT+TGG + chr4.3:53533517-53533536 MS.gene45316:CDS 30.0%
! CTTGATTGGTTATGGTTAAT+AGG + chr4.3:53533562-53533581 MS.gene45316:intron 30.0%
! GTACTTTTCGCTATTCAATT+TGG - chr4.3:53532816-53532835 None:intergenic 30.0%
!! AAAACAACAAAAGTGGGTTA+AGG + chr4.3:53533053-53533072 MS.gene45316:intron 30.0%
!! AACTTCAAGATTTTGATCAG+TGG - chr4.3:53533194-53533213 None:intergenic 30.0%
!! AATGTATGTGATGGATACTA+TGG + chr4.3:53532657-53532676 MS.gene45316:intron 30.0%
!! TGGATACACACTATTTTTCT+TGG + chr4.3:53531312-53531331 MS.gene45316:CDS 30.0%
!!! ACAATTTTTTGACTTTGCAG+AGG + chr4.3:53531694-53531713 MS.gene45316:intron 30.0%
AACACAAAGAAGCTCAAACA+AGG - chr4.3:53532172-53532191 None:intergenic 35.0%
AACCAAGAACAAAGGATGAA+AGG - chr4.3:53532593-53532612 None:intergenic 35.0%
AAGAAACTAGAATACTTCCG+AGG + chr4.3:53533406-53533425 MS.gene45316:intron 35.0%
ACCAAGCTAAATTAAGAGAG+AGG + chr4.3:53533605-53533624 MS.gene45316:intron 35.0%
ATATCTCACCGGATAGATAT+TGG + chr4.3:53532980-53532999 MS.gene45316:intron 35.0%
ATCCATGATCATGATTCATG+TGG + chr4.3:53532094-53532113 MS.gene45316:intron 35.0%
ATCCTTTCATCCTTTGTTCT+TGG + chr4.3:53532588-53532607 MS.gene45316:intron 35.0%
ATTCTGGATTCATGTATGAC+AGG - chr4.3:53531568-53531587 None:intergenic 35.0%
CAATCCCTAAATGTATGTGA+TGG + chr4.3:53532648-53532667 MS.gene45316:intron 35.0%
CTGCTCAAAACAACAAAAGT+GGG + chr4.3:53533047-53533066 MS.gene45316:intron 35.0%
GATTTAGCAACATCTGGTAA+AGG + chr4.3:53531455-53531474 MS.gene45316:CDS 35.0%
GGATTCTTATCAGAAGATAC+CGG + chr4.3:53532527-53532546 MS.gene45316:CDS 35.0%
GGGAAAATATGCTGCAATAA+TGG + chr4.3:53530751-53530770 MS.gene45316:intron 35.0%
GTATCTTCTGATAAGAATCC+AGG - chr4.3:53532527-53532546 None:intergenic 35.0%
TACCACATGAATCATGATCA+TGG - chr4.3:53532099-53532118 None:intergenic 35.0%
TAGTTGGATTTAGCAACATC+TGG + chr4.3:53531449-53531468 MS.gene45316:intron 35.0%
TCTGCGTATAAAGCTACAAA+AGG + chr4.3:53533775-53533794 MS.gene45316:CDS 35.0%
TCTGCTCAAAACAACAAAAG+TGG + chr4.3:53533046-53533065 MS.gene45316:intron 35.0%
TTCTTCACCTTATAGCCTTT+CGG - chr4.3:53533380-53533399 None:intergenic 35.0%
! AACCCAAATGCACATTTTGA+AGG - chr4.3:53531392-53531411 None:intergenic 35.0%
! AAGAGCGTACCTGTAATAAA+TGG - chr4.3:53533123-53533142 None:intergenic 35.0%
! AGAAAGTACAAAGAACTGAG+AGG - chr4.3:53531114-53531133 None:intergenic 35.0%
! ATGCTGCAATAATGGTTTGT+TGG + chr4.3:53530759-53530778 MS.gene45316:CDS 35.0%
! CATGAATCCAGAATTTGTTC+AGG + chr4.3:53531574-53531593 MS.gene45316:CDS 35.0%
! GAAAGTACAAAGAACTGAGA+GGG - chr4.3:53531113-53531132 None:intergenic 35.0%
! GATGATATTTCTGCACAAAG+AGG - chr4.3:53531189-53531208 None:intergenic 35.0%
! TACGCAGAATTTTTCTGCAT+CGG - chr4.3:53533763-53533782 None:intergenic 35.0%
! TATTTCTGCACAAAGAGGAA+AGG - chr4.3:53531184-53531203 None:intergenic 35.0%
! TTGGTATTGTTTCTTCTTGG+AGG + chr4.3:53533520-53533539 MS.gene45316:CDS 35.0%
! TTTCCCAATGCATTTTGTTC+AGG - chr4.3:53533496-53533515 None:intergenic 35.0%
!! AAGCTCAAACAAGGTTGATA+AGG - chr4.3:53532163-53532182 None:intergenic 35.0%
!! ACTATTTTTCTTGGCCGTTT+TGG + chr4.3:53531321-53531340 MS.gene45316:CDS 35.0%
!! ATAATGGTTTGTTGGCTTCT+TGG + chr4.3:53530767-53530786 MS.gene45316:CDS 35.0%
!! TTTGTTGGCTTCTTGGAAAT+GGG + chr4.3:53530774-53530793 MS.gene45316:CDS 35.0%
!!! TTCTTGGAGGTATTTTTGCA+GGG + chr4.3:53533533-53533552 MS.gene45316:CDS 35.0%
AAACCGTACTTCTCGAAATG+AGG - chr4.3:53532310-53532329 None:intergenic 40.0%
AAGAACTGCATGAATCAGAG+AGG - chr4.3:53532133-53532152 None:intergenic 40.0%
ACCTATTTACGTGTCGTAGT+TGG + chr4.3:53531433-53531452 MS.gene45316:intron 40.0%
ACTGCAAAGTATGGTACTCA+AGG + chr4.3:53533281-53533300 MS.gene45316:CDS 40.0%
AGACCTCATTTCGAGAAGTA+CGG + chr4.3:53532304-53532323 MS.gene45316:intron 40.0%
ATGCTGACCTGAACAAATTC+TGG - chr4.3:53531584-53531603 None:intergenic 40.0%
CAAAGTATGGTACTCAAGGT+TGG + chr4.3:53533285-53533304 MS.gene45316:CDS 40.0%
CTATCCGGTGAGATATGATT+AGG - chr4.3:53532976-53532995 None:intergenic 40.0%
CTGACATTGTCTATATTCCC+TGG + chr4.3:53532506-53532525 MS.gene45316:CDS 40.0%
GAACGGTAGTACTTCACAAT+TGG - chr4.3:53532225-53532244 None:intergenic 40.0%
GATACCGGATTACACAGTTT+AGG + chr4.3:53532542-53532561 MS.gene45316:CDS 40.0%
GATTACACAGTTTAGGCACA+TGG + chr4.3:53532549-53532568 MS.gene45316:CDS 40.0%
GCAGAAATATCATCCCTCTA+GGG + chr4.3:53531195-53531214 MS.gene45316:intron 40.0%
GCATCCTAATCATATCTCAC+CGG + chr4.3:53532969-53532988 MS.gene45316:intron 40.0%
GCCTCTCTCTTAATTTAGCT+TGG - chr4.3:53533609-53533628 None:intergenic 40.0%
GGACCTGAACAAAATGCATT+GGG + chr4.3:53533490-53533509 MS.gene45316:CDS 40.0%
GTATATCAGCCATTTGCAGT+TGG + chr4.3:53531229-53531248 MS.gene45316:CDS 40.0%
TAGCAACATCTGGTAAAGGA+GGG + chr4.3:53531459-53531478 MS.gene45316:CDS 40.0%
TATATCACCTCAATTCGTGG+TGG - chr4.3:53530646-53530665 None:intergenic 40.0%
TCCAACTACGACACGTAAAT+AGG - chr4.3:53531437-53531456 None:intergenic 40.0%
TCTTCACCTTATAGCCTTTC+GGG - chr4.3:53533379-53533398 None:intergenic 40.0%
TCTTTCTTGGGGATATCCAA+TGG + chr4.3:53533323-53533342 MS.gene45316:CDS 40.0%
TGCAGAAATATCATCCCTCT+AGG + chr4.3:53531194-53531213 MS.gene45316:intron 40.0%
TGCATAGTTAGTGGTGCATT+TGG + chr4.3:53531503-53531522 MS.gene45316:CDS 40.0%
TGTGCCTAAACTGTGTAATC+CGG - chr4.3:53532549-53532568 None:intergenic 40.0%
TGTTCAGGTCAGCATCATAA+TGG + chr4.3:53531589-53531608 MS.gene45316:intron 40.0%
TTAGCAACATCTGGTAAAGG+AGG + chr4.3:53531458-53531477 MS.gene45316:CDS 40.0%
TTGTTGTAGTCTTTCCTTGG+CGG + chr4.3:53531840-53531859 MS.gene45316:intron 40.0%
! AAGGTCAGCTGAAACAGTTT+TGG - chr4.3:53532268-53532287 None:intergenic 40.0%
! ACAAGGAAGCGGATTCTATT+TGG + chr4.3:53531292-53531311 MS.gene45316:CDS 40.0%
! GAAATGGGTGTCTTTTCTCT+TGG + chr4.3:53530789-53530808 MS.gene45316:CDS 40.0%
! GGGTAACACTTGATTGGTTA+TGG + chr4.3:53533554-53533573 MS.gene45316:intron 40.0%
!! GTTTGTTGGCTTCTTGGAAA+TGG + chr4.3:53530773-53530792 MS.gene45316:CDS 40.0%
!!! CTTCTTGGAGGTATTTTTGC+AGG + chr4.3:53533532-53533551 MS.gene45316:CDS 40.0%
!!! TCTTGGAGGTATTTTTGCAG+GGG + chr4.3:53533534-53533553 MS.gene45316:CDS 40.0%
!!! TGAAACAGTTTTGGACCCTT+CGG - chr4.3:53532259-53532278 None:intergenic 40.0%
ACAAGAGTAAGCACCCTAGA+GGG - chr4.3:53531211-53531230 None:intergenic 45.0%
ACATCTGGTAAAGGAGGGAT+TGG + chr4.3:53531464-53531483 MS.gene45316:CDS 45.0%
AGCATCAGGTGCTCTAACAT+CGG + chr4.3:53531869-53531888 MS.gene45316:CDS 45.0%
CATGCACAAGGAGGAATGAT+TGG + chr4.3:53531539-53531558 MS.gene45316:CDS 45.0%
CTTCACCTTATAGCCTTTCG+GGG - chr4.3:53533378-53533397 None:intergenic 45.0%
GCTAGTGTTCCAACTGCAAA+TGG - chr4.3:53531241-53531260 None:intergenic 45.0%
GCTGTAATACTCTTCTCGAG+CGG + chr4.3:53531062-53531081 MS.gene45316:intron 45.0%
GGAGGGATTGGAACATTCAT+TGG + chr4.3:53531476-53531495 MS.gene45316:CDS 45.0%
GGGACCTGAACAAAATGCAT+TGG + chr4.3:53533489-53533508 MS.gene45316:intron 45.0%
GTAAGACTCTATCGCACTCA+CGG - chr4.3:53532945-53532964 None:intergenic 45.0%
GTACTTCTCGAAATGAGGTC+TGG - chr4.3:53532305-53532324 None:intergenic 45.0%
GTATGTTGCAGCTGTCTGTT+GGG + chr4.3:53531004-53531023 MS.gene45316:intron 45.0%
GTTCAAAAGCAGCATCCGAA+GGG + chr4.3:53532241-53532260 MS.gene45316:CDS 45.0%
TACAAGAGTAAGCACCCTAG+AGG - chr4.3:53531212-53531231 None:intergenic 45.0%
TTAGCAGATGCTCATGCACA+AGG + chr4.3:53531527-53531546 MS.gene45316:CDS 45.0%
TTGCAGGGGTAACACTTGAT+TGG + chr4.3:53533548-53533567 MS.gene45316:intron 45.0%
! CTGGTTCGTTATGATGCTTG+CGG + chr4.3:53530933-53530952 MS.gene45316:intron 45.0%
!!! CTTCGGATGCTGCTTTTGAA+CGG - chr4.3:53532242-53532261 None:intergenic 45.0%
AAGTGAGAACACAGACAGCG+AGG - chr4.3:53533352-53533371 None:intergenic 50.0%
AGCTGCAACATACCCAAAGC+GGG - chr4.3:53530997-53531016 None:intergenic 50.0%
ATCACCTCAATTCGTGGTGG+AGG - chr4.3:53530643-53530662 None:intergenic 50.0%
CAGCACTCTGATGCTTAGCA+TGG + chr4.3:53531962-53531981 MS.gene45316:intron 50.0%
CAGCTGCAACATACCCAAAG+CGG - chr4.3:53530998-53531017 None:intergenic 50.0%
CGTTCAAAAGCAGCATCCGA+AGG + chr4.3:53532240-53532259 MS.gene45316:CDS 50.0%
CTGGTTAGCGGTGATATCTC+TGG + chr4.3:53530914-53530933 MS.gene45316:intron 50.0%
GGTAGTAGCCACCACAACAT+AGG + chr4.3:53533796-53533815 MS.gene45316:CDS 50.0%
GGTATGTTGCAGCTGTCTGT+TGG + chr4.3:53531003-53531022 MS.gene45316:intron 50.0%
TTCTGCCCCGAAAGGCTATA+AGG + chr4.3:53533370-53533389 MS.gene45316:CDS 50.0%
! TCTAAGGACGGACTTCGCAA+AGG + chr4.3:53531927-53531946 MS.gene45316:CDS 50.0%
!! CTCGAGCGGACTATTTGGTT+GGG + chr4.3:53531076-53531095 MS.gene45316:intron 50.0%
!! CTCTTCTCGAGCGGACTATT+TGG + chr4.3:53531071-53531090 MS.gene45316:intron 50.0%
!! GTGCTCTAACATCGGCTTTG+AGG + chr4.3:53531877-53531896 MS.gene45316:CDS 50.0%
!! TCTCGAGCGGACTATTTGGT+TGG + chr4.3:53531075-53531094 MS.gene45316:intron 50.0%
!!! CTGGTTTTAAGCCCCGCTTT+GGG + chr4.3:53530982-53531001 MS.gene45316:intron 50.0%
!!! TCTGGTTTTAAGCCCCGCTT+TGG + chr4.3:53530981-53531000 MS.gene45316:intron 50.0%
ACAGACAGCGAGGTAGCCAT+TGG - chr4.3:53533342-53533361 None:intergenic 55.0%
GCAGATGCTCATGCACAAGG+AGG + chr4.3:53531530-53531549 MS.gene45316:CDS 55.0%
GCTGCAACATACCCAAAGCG+GGG - chr4.3:53530996-53531015 None:intergenic 55.0%
GTTCTCACTTCTGCCCCGAA+AGG + chr4.3:53533362-53533381 MS.gene45316:CDS 55.0%
TCTGGATTCCAGCTGCAGCA+AGG - chr4.3:53532287-53532306 None:intergenic 55.0%
TGAGCCTCCACCACGAATTG+AGG + chr4.3:53530636-53530655 MS.gene45316:CDS 55.0%
TCAGCTGACCTTGCTGCAGC+TGG + chr4.3:53532276-53532295 MS.gene45316:CDS 60.0%
! GAACTGAGAGGGCGTAAGCC+TGG - chr4.3:53531102-53531121 None:intergenic 60.0%
! GCGGACTATTTGGTTGGGCC+AGG + chr4.3:53531081-53531100 MS.gene45316:intron 60.0%
CTGATGCTGCAGCACCGCCA+AGG - chr4.3:53531857-53531876 None:intergenic 65.0%
!! CTTGGCGGTGCTGCAGCATC+AGG + chr4.3:53531855-53531874 MS.gene45316:CDS 65.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 53530625 53533825 53530625 ID=MS.gene45316
chr4.3 mRNA 53530625 53533825 53530625 ID=MS.gene45316.t1;Parent=MS.gene45316
chr4.3 exon 53530625 53530657 53530625 ID=MS.gene45316.t1.exon1;Parent=MS.gene45316.t1
chr4.3 CDS 53530625 53530657 53530625 ID=cds.MS.gene45316.t1;Parent=MS.gene45316.t1
chr4.3 exon 53530752 53530856 53530752 ID=MS.gene45316.t1.exon2;Parent=MS.gene45316.t1
chr4.3 CDS 53530752 53530856 53530752 ID=cds.MS.gene45316.t1;Parent=MS.gene45316.t1
chr4.3 exon 53531199 53531354 53531199 ID=MS.gene45316.t1.exon3;Parent=MS.gene45316.t1
chr4.3 CDS 53531199 53531354 53531199 ID=cds.MS.gene45316.t1;Parent=MS.gene45316.t1
chr4.3 exon 53531452 53531595 53531452 ID=MS.gene45316.t1.exon4;Parent=MS.gene45316.t1
chr4.3 CDS 53531452 53531595 53531452 ID=cds.MS.gene45316.t1;Parent=MS.gene45316.t1
chr4.3 exon 53531849 53531954 53531849 ID=MS.gene45316.t1.exon5;Parent=MS.gene45316.t1
chr4.3 CDS 53531849 53531954 53531849 ID=cds.MS.gene45316.t1;Parent=MS.gene45316.t1
chr4.3 exon 53532148 53532320 53532148 ID=MS.gene45316.t1.exon6;Parent=MS.gene45316.t1
chr4.3 CDS 53532148 53532320 53532148 ID=cds.MS.gene45316.t1;Parent=MS.gene45316.t1
chr4.3 exon 53532410 53532570 53532410 ID=MS.gene45316.t1.exon7;Parent=MS.gene45316.t1
chr4.3 CDS 53532410 53532570 53532410 ID=cds.MS.gene45316.t1;Parent=MS.gene45316.t1
chr4.3 exon 53533133 53533391 53533133 ID=MS.gene45316.t1.exon8;Parent=MS.gene45316.t1
chr4.3 CDS 53533133 53533391 53533133 ID=cds.MS.gene45316.t1;Parent=MS.gene45316.t1
chr4.3 exon 53533490 53533555 53533490 ID=MS.gene45316.t1.exon9;Parent=MS.gene45316.t1
chr4.3 CDS 53533490 53533555 53533490 ID=cds.MS.gene45316.t1;Parent=MS.gene45316.t1
chr4.3 exon 53533742 53533825 53533742 ID=MS.gene45316.t1.exon10;Parent=MS.gene45316.t1
chr4.3 CDS 53533742 53533825 53533742 ID=cds.MS.gene45316.t1;Parent=MS.gene45316.t1
Gene Sequence

>MS.gene45316

ATGGGCGACAGTGAGCCTCCACCACGAATTGAGGTGATATATATTACTAATTACTAACTTAATTATTACTTTAGCAAAGATTATATATGCTTTATAGTTCATCATTTAAATTATTTTGCATTTGCAGGGAAAATATGCTGCAATAATGGTTTGTTGGCTTCTTGGAAATGGGTGTCTTTTCTCTTGGAACAGTATGCTAACAATTGAAGATTACTATGTTTATTTATTTCCGGTAATGTATCTACTTTCTGATGCATTTTTTAGTTGATGTATCCGTTAAATATTCACTCTGGTTAGCGGTGATATCTCTGGTTCGTTATGATGCTTGCGGCCTTTTACACTCATTTATTTTGTAATCTGGTTTTAAGCCCCGCTTTGGGTATGTTGCAGCTGTCTGTTGGGCATTTGTTTTTCTTTATACCACTTTTATTATGTCTGCTGTAATACTCTTCTCGAGCGGACTATTTGGTTGGGCCAGGCTTACGCCCTCTCAGTTCTTTGTACTTTCTCTTTATTTTATATATTTTTCTTTGCTTAAAAAAAAAAACTTAAATTTCCTTTCCTCTTTGTGCAGAAATATCATCCCTCTAGGGTGCTTACTCTTGTATATCAGCCATTTGCAGTTGGAACACTAGCAATTCTTACTTACTATGAGGCAAAAATCAATACAAGGAAGCGGATTCTATTTGGATACACACTATTTTTCTTGGCCGTTTTGGCTGTTTTAATTGTAAATCCTGTTAATTTTTTTGTTAACTTTGATTCCTTCAAAATGTGCATTTGGGTTTTGAATTTTGATTTACACTAAACCTATTTACGTGTCGTAGTTGGATTTAGCAACATCTGGTAAAGGAGGGATTGGAACATTCATTGGTATATGCATAGTTAGTGGTGCATTTGGATTAGCAGATGCTCATGCACAAGGAGGAATGATTGGAGACCTGTCATACATGAATCCAGAATTTGTTCAGGTCAGCATCATAATGGAACATAGTTCTTAATTACAGTCGCATCTACAATGCTAACTTTGATATTCGGCAAAATATGAGCAATTGTAGCACATGCAGAAACAATTTTTTGACTTTGCAGAGGTGTCTAAAACTTTTATTTAGTGATTGCAATTGCGGTTACAGACTGCAATTTAGAACTATGAATGAAATTACTACGATATTTAGAAACTTCCTTCAACATATGCAACTCTTTTTAAAGGTTTTATTGTTGTAGTCTTTCCTTGGCGGTGCTGCAGCATCAGGTGCTCTAACATCGGCTTTGAGGTTAATTACAAAAGCAATATTTGAAAATTCTAAGGACGGACTTCGCAAAGGAGCGAGTAAGTTCAGCACTCTGATGCTTAGCATGGAAACATAGAAGTAGTTTTTGTCTCTATTTCTATTCAGTTAATTTTGACAATAATTTCTTAGCATGCAAATTGATTTCTTTTAGTATCGGTTCCTACAATTCATAAAGATATCCATGATCATGATTCATGTGGTAAACTGAATATTCCTCTCTGATTCATGCAGTTCTTTTCTTTTCCTTATCAACCTTGTTTGAGCTTCTTTGTGTTGTTCTCTATGCATTTGTGTTTCCTAAATTACCAATTGTGAAGTACTACCGTTCAAAAGCAGCATCCGAAGGGTCCAAAACTGTTTCAGCTGACCTTGCTGCAGCTGGAATCCAGACCTCATTTCGAGAAGTACGGTTTCTTTTCTTTTCAATTTCTCACGGAACTGCCTTACTATTGAGATTCAGTTTGTTTATTAGACTAATTTGTGTTTTTTTCAGGCAACTGAAGAATTAAAACAATTTGAGCGCAAAGGAAATAAGCAATTGTTATTGGAAAACATTGATTATGCAATTGATTTGTTTCTAATATTTGCTCTGACATTGTCTATATTCCCTGGATTCTTATCAGAAGATACCGGATTACACAGTTTAGGCACATGGTAAGTTCACTACTTGAATCCTTTCATCCTTTGTTCTTGGTTCTTTTTAGTCATAAACTTCGACTAAACAGTCATTTCAATCCCTAAATGTATGTGATGGATACTATGGTCACTGAATCTATCGAAAATGAAAAACATCTCTCGGTGTATGTCTCGTTAGTATTTATTTGAACAAAAGTGATTAACAAATACACATTTGAGGACCGAAATAAGTAATAACTAACGAAAGATATATTTCATAACCAAATTGAATAGCGAAAAGTACATTTGAGAATGTCTTTAAAATCATGATAACAACTAACAATGCCCAACACATTCAAATTTCAATTTAACTATTTACTCCATAAACTTTTGAATTTAAAACTTATGCGCCGTGAGTGCGATAGAGTCTTACAAATGCATCCTAATCATATCTCACCGGATAGATATTGGAATGATATTTTAAGAAGTAATCAAAACAAAGACACTAAACATTTCTGCTCAAAACAACAAAAGTGGGTTAAGGTCTTTGTTTGTATGTATGTTCAATTTCAAAACTGGTTGATATTTCCATTTATTACAGGTACGCTCTTGTTTTAATTGCTATGTATAATGTATGGGATCTTATCGGAAGATACATTCCACTGATCAAAATCTTGAAGTTGGAGTCTAGAAAGCTGATCACTACAGCAGTTATTTCTCGAGTTTTACTCGTACCAGCATTTTATTTCACTGCAAAGTATGGTACTCAAGGTTGGATGATAATGTTGACATCTTTCTTGGGGATATCCAATGGCTACCTCGCTGTCTGTGTTCTCACTTCTGCCCCGAAAGGCTATAAGGTGAAGAATCCTTTAAGAAACTAGAATACTTCCGAGGTTTAGAGTTATTTAAATATTGAATAGATTCGTTGATATTTGTATGTTTTTTACTTTTTTAGGGACCTGAACAAAATGCATTGGGAAATATCTTGGTATTGTTTCTTCTTGGAGGTATTTTTGCAGGGGTAACACTTGATTGGTTATGGTTAATAGGTAAAGGATGGTGAGATCTCAACCAAGCTAAATTAAGAGAGAGGCCTCATTCACAAACAGATAGAATTGTGTTTTATTTTACATTTTTACATTCTTATCATTTAGTCAATGTTGATGATTCGTTAATTTCAAAGCTAAATTCAATTGTTTAATTCAAGTCTCTCGAAAGAGCTTCACCGATGCAGAAAAATTCTGCGTATAAAGCTACAAAAGGTAGTAGCCACCACAACATAGGCAACTAA

Protein sequence

>MS.gene45316.t1

MGDSEPPPRIEGKYAAIMVCWLLGNGCLFSWNSMLTIEDYYVYLFPKYHPSRVLTLVYQPFAVGTLAILTYYEAKINTRKRILFGYTLFFLAVLAVLILDLATSGKGGIGTFIGICIVSGAFGLADAHAQGGMIGDLSYMNPEFVQSFLGGAAASGALTSALRLITKAIFENSKDGLRKGAILFFSLSTLFELLCVVLYAFVFPKLPIVKYYRSKAASEGSKTVSADLAAAGIQTSFREATEELKQFERKGNKQLLLENIDYAIDLFLIFALTLSIFPGFLSEDTGLHSLGTWYALVLIAMYNVWDLIGRYIPLIKILKLESRKLITTAVISRVLLVPAFYFTAKYGTQGWMIMLTSFLGISNGYLAVCVLTSAPKGYKGPEQNALGNILVLFLLGGIFAGSLERASPMQKNSAYKATKGSSHHNIGN