Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene45316.t1 | KEH17554.1 | 97.5 | 401 | 10 | 0 | 1 | 401 | 1 | 401 | 7.80E-216 | 759.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene45316.t1 | Q9M0Y3 | 69.4 | 399 | 121 | 1 | 3 | 401 | 6 | 403 | 1.4e-157 | 557.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene45316.t1 | A0A072TIZ8 | 97.5 | 401 | 10 | 0 | 1 | 401 | 1 | 401 | 5.6e-216 | 759.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene45316 | MS.gene046073 | PPI |
MS.gene064217 | MS.gene45316 | PPI |
MS.gene046074 | MS.gene45316 | PPI |
MS.gene046071 | MS.gene45316 | PPI |
MS.gene45318 | MS.gene45316 | PPI |
MS.gene064218 | MS.gene45316 | PPI |
MS.gene45316 | MS.gene043342 | PPI |
MS.gene51411 | MS.gene45316 | PPI |
MS.gene45316 | MS.gene51414 | PPI |
MS.gene45316 | MS.gene31551 | PPI |
MS.gene45316 | MS.gene45320 | PPI |
MS.gene31551 | MS.gene45316 | PPI |
MS.gene45316 | MS.gene029003 | PPI |
MS.gene064214 | MS.gene45316 | PPI |
MS.gene35750 | MS.gene45316 | PPI |
MS.gene51416 | MS.gene45316 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene45316.t1 | MTR_0008s0170 | 97.506 | 401 | 10 | 0 | 1 | 401 | 1 | 401 | 0.0 | 786 |
MS.gene45316.t1 | MTR_0008s0130 | 80.549 | 401 | 78 | 0 | 1 | 401 | 1 | 401 | 0.0 | 671 |
MS.gene45316.t1 | MTR_4g050990 | 82.294 | 401 | 71 | 0 | 1 | 401 | 1 | 401 | 0.0 | 657 |
MS.gene45316.t1 | MTR_2g089520 | 82.294 | 401 | 71 | 0 | 1 | 401 | 1 | 401 | 0.0 | 657 |
MS.gene45316.t1 | MTR_2g047968 | 80.519 | 385 | 75 | 0 | 4 | 388 | 4 | 388 | 0.0 | 620 |
MS.gene45316.t1 | MTR_2g011600 | 68.922 | 399 | 122 | 1 | 7 | 403 | 14 | 412 | 0.0 | 551 |
MS.gene45316.t1 | MTR_1g071120 | 76.504 | 349 | 73 | 3 | 11 | 358 | 53 | 393 | 0.0 | 535 |
MS.gene45316.t1 | MTR_2g011580 | 69.730 | 370 | 111 | 1 | 34 | 402 | 1 | 370 | 0.0 | 525 |
MS.gene45316.t1 | MTR_2g011600 | 67.131 | 359 | 116 | 1 | 47 | 403 | 3 | 361 | 2.54e-169 | 479 |
MS.gene45316.t1 | MTR_8g007285 | 57.910 | 335 | 139 | 1 | 52 | 384 | 2 | 336 | 8.39e-133 | 386 |
MS.gene45316.t1 | MTR_0003s0470 | 32.587 | 402 | 243 | 8 | 11 | 403 | 26 | 408 | 4.02e-55 | 188 |
MS.gene45316.t1 | MTR_3g462280 | 30.769 | 403 | 249 | 9 | 11 | 403 | 34 | 416 | 1.22e-45 | 163 |
MS.gene45316.t1 | MTR_4g114710 | 27.885 | 416 | 257 | 9 | 1 | 403 | 6 | 391 | 1.91e-38 | 143 |
MS.gene45316.t1 | MTR_2g011540 | 51.852 | 135 | 58 | 1 | 52 | 179 | 2 | 136 | 8.58e-37 | 132 |
MS.gene45316.t1 | MTR_2g011530 | 69.565 | 92 | 27 | 1 | 278 | 368 | 2 | 93 | 2.78e-35 | 126 |
MS.gene45316.t1 | MTR_2g011560 | 36.842 | 152 | 40 | 3 | 177 | 323 | 17 | 117 | 4.75e-17 | 77.4 |
MS.gene45316.t1 | MTR_2g011570 | 50.769 | 65 | 25 | 1 | 137 | 201 | 1 | 58 | 1.97e-12 | 62.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene45316.t1 | AT4G05120 | 69.424 | 399 | 121 | 1 | 3 | 401 | 6 | 403 | 0.0 | 578 |
MS.gene45316.t1 | AT4G05120 | 69.424 | 399 | 121 | 1 | 3 | 401 | 6 | 403 | 0.0 | 578 |
MS.gene45316.t1 | AT4G05110 | 65.163 | 399 | 138 | 1 | 3 | 401 | 6 | 403 | 0.0 | 540 |
MS.gene45316.t1 | AT4G05110 | 65.163 | 399 | 138 | 1 | 3 | 401 | 6 | 403 | 0.0 | 539 |
MS.gene45316.t1 | AT4G05110 | 65.163 | 399 | 138 | 1 | 3 | 401 | 6 | 403 | 0.0 | 539 |
MS.gene45316.t1 | AT4G05140 | 63.659 | 399 | 145 | 0 | 3 | 401 | 6 | 404 | 0.0 | 538 |
MS.gene45316.t1 | AT4G05130 | 62.750 | 400 | 146 | 2 | 3 | 401 | 6 | 403 | 0.0 | 523 |
MS.gene45316.t1 | AT3G09990 | 63.776 | 392 | 141 | 1 | 11 | 401 | 13 | 404 | 0.0 | 520 |
MS.gene45316.t1 | AT1G61630 | 60.401 | 399 | 157 | 1 | 4 | 401 | 5 | 403 | 1.80e-173 | 492 |
MS.gene45316.t1 | AT1G70330 | 32.126 | 414 | 248 | 9 | 2 | 403 | 51 | 443 | 5.18e-53 | 184 |
MS.gene45316.t1 | AT1G02630 | 28.462 | 390 | 238 | 8 | 22 | 403 | 26 | 382 | 3.67e-42 | 153 |
MS.gene45316.t1 | AT1G02630 | 29.688 | 192 | 133 | 2 | 22 | 212 | 26 | 216 | 3.21e-23 | 100 |
Find 89 sgRNAs with CRISPR-Local
Find 189 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCTTCACCTTATAGCCTTTC+GGG | 0.166232 | 4.3:-53533376 | None:intergenic |
AGGAAATAAGCAATTGTTAT+TGG | 0.204429 | 4.3:+53532442 | MS.gene45316:CDS |
ACAAGGAAGCGGATTCTATT+TGG | 0.224058 | 4.3:+53531292 | MS.gene45316:CDS |
TACTTCACAATTGGTAATTT+AGG | 0.225152 | 4.3:-53532213 | None:intergenic |
TTACTATGTTTATTTATTTC+CGG | 0.229116 | 4.3:+53530835 | MS.gene45316:CDS |
TTCTTCACCTTATAGCCTTT+CGG | 0.245719 | 4.3:-53533377 | None:intergenic |
GATAATGTTGACATCTTTCT+TGG | 0.252333 | 4.3:+53533310 | MS.gene45316:CDS |
ATCTTGGTATTGTTTCTTCT+TGG | 0.254429 | 4.3:+53533517 | MS.gene45316:CDS |
ATAATGGTTTGTTGGCTTCT+TGG | 0.291167 | 4.3:+53530767 | MS.gene45316:CDS |
ATGCTGACCTGAACAAATTC+TGG | 0.292956 | 4.3:-53531581 | None:intergenic |
AGCAATATTTGAAAATTCTA+AGG | 0.295643 | 4.3:+53531911 | MS.gene45316:CDS |
CTTGGCGGTGCTGCAGCATC+AGG | 0.325226 | 4.3:+53531855 | MS.gene45316:CDS |
TAATTGCTATGTATAATGTA+TGG | 0.328838 | 4.3:+53533147 | MS.gene45316:CDS |
TGCATAGTTAGTGGTGCATT+TGG | 0.338224 | 4.3:+53531503 | MS.gene45316:CDS |
GTTTGTTGGCTTCTTGGAAA+TGG | 0.345493 | 4.3:+53530773 | MS.gene45316:CDS |
TTCTGCCCCGAAAGGCTATA+AGG | 0.352392 | 4.3:+53533370 | MS.gene45316:CDS |
GGGAAAATATGCTGCAATAA+TGG | 0.365738 | 4.3:+53530751 | MS.gene45316:intron |
TTGGTATTGTTTCTTCTTGG+AGG | 0.389863 | 4.3:+53533520 | MS.gene45316:CDS |
ATAATGTTGACATCTTTCTT+GGG | 0.400944 | 4.3:+53533311 | MS.gene45316:CDS |
TCAGCTGACCTTGCTGCAGC+TGG | 0.400973 | 4.3:+53532276 | MS.gene45316:CDS |
GGAGGGATTGGAACATTCAT+TGG | 0.406478 | 4.3:+53531476 | MS.gene45316:CDS |
AAATGCATTGGGAAATATCT+TGG | 0.414446 | 4.3:+53533501 | MS.gene45316:CDS |
ACTGATCAAAATCTTGAAGT+TGG | 0.417735 | 4.3:+53533193 | MS.gene45316:CDS |
CATGAATCCAGAATTTGTTC+AGG | 0.422496 | 4.3:+53531574 | MS.gene45316:CDS |
GTATCTTCTGATAAGAATCC+AGG | 0.425663 | 4.3:-53532524 | None:intergenic |
GAACGGTAGTACTTCACAAT+TGG | 0.426412 | 4.3:-53532222 | None:intergenic |
TTATTGTTGTAGTCTTTCCT+TGG | 0.427988 | 4.3:+53531837 | MS.gene45316:intron |
GTGCTCTAACATCGGCTTTG+AGG | 0.429741 | 4.3:+53531877 | MS.gene45316:CDS |
TACAATTAAAACAGCCAAAA+CGG | 0.430063 | 4.3:-53531335 | None:intergenic |
AAGGTCAGCTGAAACAGTTT+TGG | 0.431717 | 4.3:-53532265 | None:intergenic |
TTTGTTGGCTTCTTGGAAAT+GGG | 0.439029 | 4.3:+53530774 | MS.gene45316:CDS |
CATGCACAAGGAGGAATGAT+TGG | 0.442301 | 4.3:+53531539 | MS.gene45316:CDS |
AAGCTCAAACAAGGTTGATA+AGG | 0.443767 | 4.3:-53532160 | None:intergenic |
TAGTTGGATTTAGCAACATC+TGG | 0.449427 | 4.3:+53531449 | MS.gene45316:intron |
ATGCTGCAATAATGGTTTGT+TGG | 0.453042 | 4.3:+53530759 | MS.gene45316:CDS |
CTGACATTGTCTATATTCCC+TGG | 0.457152 | 4.3:+53532506 | MS.gene45316:CDS |
TATAATGTATGGGATCTTAT+CGG | 0.459552 | 4.3:+53533158 | MS.gene45316:CDS |
ATTGGTATATGCATAGTTAG+TGG | 0.468620 | 4.3:+53531494 | MS.gene45316:CDS |
TTGTTGTAGTCTTTCCTTGG+CGG | 0.468717 | 4.3:+53531840 | MS.gene45316:intron |
ACATCTGGTAAAGGAGGGAT+TGG | 0.484610 | 4.3:+53531464 | MS.gene45316:CDS |
GATACCGGATTACACAGTTT+AGG | 0.487502 | 4.3:+53532542 | MS.gene45316:CDS |
AATTGCTATGTATAATGTAT+GGG | 0.488467 | 4.3:+53533148 | MS.gene45316:CDS |
GGGACCTGAACAAAATGCAT+TGG | 0.488651 | 4.3:+53533489 | MS.gene45316:intron |
GTACTTCTCGAAATGAGGTC+TGG | 0.497951 | 4.3:-53532302 | None:intergenic |
AGCAATTCTTACTTACTATG+AGG | 0.505159 | 4.3:+53531258 | MS.gene45316:CDS |
GGACCTGAACAAAATGCATT+GGG | 0.505661 | 4.3:+53533490 | MS.gene45316:CDS |
GCTAGTGTTCCAACTGCAAA+TGG | 0.506628 | 4.3:-53531238 | None:intergenic |
ATCACCTCAATTCGTGGTGG+AGG | 0.522623 | 4.3:-53530640 | None:intergenic |
TGCAGAAATATCATCCCTCT+AGG | 0.522851 | 4.3:+53531194 | MS.gene45316:intron |
TCTGCGTATAAAGCTACAAA+AGG | 0.524042 | 4.3:+53533775 | MS.gene45316:CDS |
GATTTAGCAACATCTGGTAA+AGG | 0.531613 | 4.3:+53531455 | MS.gene45316:CDS |
AAACCGTACTTCTCGAAATG+AGG | 0.538163 | 4.3:-53532307 | None:intergenic |
TGTGCCTAAACTGTGTAATC+CGG | 0.542014 | 4.3:-53532546 | None:intergenic |
CAAAGTATGGTACTCAAGGT+TGG | 0.542078 | 4.3:+53533285 | MS.gene45316:CDS |
ACAGACAGCGAGGTAGCCAT+TGG | 0.547272 | 4.3:-53533339 | None:intergenic |
ATTCTGGATTCATGTATGAC+AGG | 0.549368 | 4.3:-53531565 | None:intergenic |
TGAGCCTCCACCACGAATTG+AGG | 0.549820 | 4.3:+53530636 | MS.gene45316:CDS |
GGATTCTTATCAGAAGATAC+CGG | 0.550056 | 4.3:+53532527 | MS.gene45316:CDS |
CTGATGCTGCAGCACCGCCA+AGG | 0.552472 | 4.3:-53531854 | None:intergenic |
GTATATCAGCCATTTGCAGT+TGG | 0.555669 | 4.3:+53531229 | MS.gene45316:CDS |
TTAAAACAATTTGAGCGCAA+AGG | 0.557575 | 4.3:+53532422 | MS.gene45316:CDS |
TCTTTCTTGGGGATATCCAA+TGG | 0.562937 | 4.3:+53533323 | MS.gene45316:CDS |
TTTGCAGTGAAATAAAATGC+TGG | 0.563621 | 4.3:-53533266 | None:intergenic |
ATATATATCACCTCAATTCG+TGG | 0.564481 | 4.3:-53530646 | None:intergenic |
TAATGTTGACATCTTTCTTG+GGG | 0.567874 | 4.3:+53533312 | MS.gene45316:CDS |
ACTGCAAAGTATGGTACTCA+AGG | 0.567878 | 4.3:+53533281 | MS.gene45316:CDS |
GGTAGTAGCCACCACAACAT+AGG | 0.568265 | 4.3:+53533796 | MS.gene45316:CDS |
AGCATCAGGTGCTCTAACAT+CGG | 0.577110 | 4.3:+53531869 | MS.gene45316:CDS |
TTAGCAACATCTGGTAAAGG+AGG | 0.580672 | 4.3:+53531458 | MS.gene45316:CDS |
CGTTCAAAAGCAGCATCCGA+AGG | 0.583519 | 4.3:+53532240 | MS.gene45316:CDS |
TACAAGAGTAAGCACCCTAG+AGG | 0.583761 | 4.3:-53531209 | None:intergenic |
ATATTTGAAAATTCTAAGGA+CGG | 0.599191 | 4.3:+53531915 | MS.gene45316:CDS |
GTTCTCACTTCTGCCCCGAA+AGG | 0.606657 | 4.3:+53533362 | MS.gene45316:CDS |
CTTCACCTTATAGCCTTTCG+GGG | 0.611942 | 4.3:-53533375 | None:intergenic |
TAGCAACATCTGGTAAAGGA+GGG | 0.612233 | 4.3:+53531459 | MS.gene45316:CDS |
AACACAAAGAAGCTCAAACA+AGG | 0.615784 | 4.3:-53532169 | None:intergenic |
TTAGCAGATGCTCATGCACA+AGG | 0.620251 | 4.3:+53531527 | MS.gene45316:CDS |
GCAGAAATATCATCCCTCTA+GGG | 0.623345 | 4.3:+53531195 | MS.gene45316:intron |
TATCTTCTGATAAGAATCCA+GGG | 0.624746 | 4.3:-53532523 | None:intergenic |
GTTCAAAAGCAGCATCCGAA+GGG | 0.625870 | 4.3:+53532241 | MS.gene45316:CDS |
TTTAGTTGCCTATGTTGTGG+TGG | 0.627226 | 4.3:-53533804 | None:intergenic |
GGGTTTAGTTGCCTATGTTG+TGG | 0.627938 | 4.3:-53533807 | None:intergenic |
ACAAGAGTAAGCACCCTAGA+GGG | 0.631895 | 4.3:-53531208 | None:intergenic |
TCTAAGGACGGACTTCGCAA+AGG | 0.638434 | 4.3:+53531927 | MS.gene45316:CDS |
GATTACACAGTTTAGGCACA+TGG | 0.648704 | 4.3:+53532549 | MS.gene45316:CDS |
TCTGGATTCCAGCTGCAGCA+AGG | 0.649624 | 4.3:-53532284 | None:intergenic |
TATATCACCTCAATTCGTGG+TGG | 0.676520 | 4.3:-53530643 | None:intergenic |
AAGTGAGAACACAGACAGCG+AGG | 0.688797 | 4.3:-53533349 | None:intergenic |
GCAGATGCTCATGCACAAGG+AGG | 0.707799 | 4.3:+53531530 | MS.gene45316:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAGTTAACAAAAAAATTAAC+AGG | - | chr4.3:53531364-53531383 | None:intergenic | 15.0% |
!! | TTACTATGTTTATTTATTTC+CGG | + | chr4.3:53530835-53530854 | MS.gene45316:CDS | 15.0% |
!!! | AAATTGATTTCTTTTAGTAT+CGG | + | chr4.3:53532051-53532070 | MS.gene45316:intron | 15.0% |
!!! | GTATGTTTTTTACTTTTTTA+GGG | + | chr4.3:53533469-53533488 | MS.gene45316:intron | 15.0% |
!!! | GTTTTAAATTCAAAAGTTTA+TGG | - | chr4.3:53532915-53532934 | None:intergenic | 15.0% |
!!! | TGTATGTTTTTTACTTTTTT+AGG | + | chr4.3:53533468-53533487 | MS.gene45316:intron | 15.0% |
!! | AAATTGAAATTTGAATGTGT+TGG | - | chr4.3:53532881-53532900 | None:intergenic | 20.0% |
!! | AATTGAAATTTGAATGTGTT+GGG | - | chr4.3:53532880-53532899 | None:intergenic | 20.0% |
!! | AATTGCTATGTATAATGTAT+GGG | + | chr4.3:53533148-53533167 | MS.gene45316:CDS | 20.0% |
!! | ACAAAATAAATGAGTGTAAA+AGG | - | chr4.3:53530959-53530978 | None:intergenic | 20.0% |
!! | AGCAATATTTGAAAATTCTA+AGG | + | chr4.3:53531911-53531930 | MS.gene45316:CDS | 20.0% |
!! | ATTTAAATAACTCTAAACCT+CGG | - | chr4.3:53533426-53533445 | None:intergenic | 20.0% |
!! | TAATTGCTATGTATAATGTA+TGG | + | chr4.3:53533147-53533166 | MS.gene45316:CDS | 20.0% |
!! | TCGTTAGTTATTACTTATTT+CGG | - | chr4.3:53532777-53532796 | None:intergenic | 20.0% |
!! | TTGATATTTCCATTTATTAC+AGG | + | chr4.3:53533111-53533130 | MS.gene45316:intron | 20.0% |
!!! | ATATTTGAAAATTCTAAGGA+CGG | + | chr4.3:53531915-53531934 | MS.gene45316:CDS | 20.0% |
!!! | TAAATTATTTTGCATTTGCA+GGG | + | chr4.3:53530731-53530750 | MS.gene45316:intron | 20.0% |
!!! | TTAAATTATTTTGCATTTGC+AGG | + | chr4.3:53530730-53530749 | MS.gene45316:intron | 20.0% |
! | ACAATGCTAACTTTGATATT+CGG | + | chr4.3:53531640-53531659 | MS.gene45316:intron | 25.0% |
! | AGGAAATAAGCAATTGTTAT+TGG | + | chr4.3:53532442-53532461 | MS.gene45316:CDS | 25.0% |
! | ATAATGTTGACATCTTTCTT+GGG | + | chr4.3:53533311-53533330 | MS.gene45316:CDS | 25.0% |
! | ATATCATTCCAATATCTATC+CGG | - | chr4.3:53532991-53533010 | None:intergenic | 25.0% |
! | GATTAACAAATACACATTTG+AGG | + | chr4.3:53532750-53532769 | MS.gene45316:intron | 25.0% |
! | TAACCAGAGTGAATATTTAA+CGG | - | chr4.3:53530901-53530920 | None:intergenic | 25.0% |
! | TACAATTAAAACAGCCAAAA+CGG | - | chr4.3:53531338-53531357 | None:intergenic | 25.0% |
! | TATAATGTATGGGATCTTAT+CGG | + | chr4.3:53533158-53533177 | MS.gene45316:CDS | 25.0% |
! | TGGATATCTTTATGAATTGT+AGG | - | chr4.3:53532079-53532098 | None:intergenic | 25.0% |
! | TGTATGTTCAATTTCAAAAC+TGG | + | chr4.3:53533088-53533107 | MS.gene45316:intron | 25.0% |
! | TTATTTAGTGATTGCAATTG+CGG | + | chr4.3:53531729-53531748 | MS.gene45316:intron | 25.0% |
!! | ACATATGCAACTCTTTTTAA+AGG | + | chr4.3:53531812-53531831 | MS.gene45316:intron | 25.0% |
!! | CTTTTCTTTTCAATTTCTCA+CGG | + | chr4.3:53532330-53532349 | MS.gene45316:intron | 25.0% |
!! | TACTTCACAATTGGTAATTT+AGG | - | chr4.3:53532216-53532235 | None:intergenic | 25.0% |
!!! | CACTCATTTATTTTGTAATC+TGG | + | chr4.3:53530963-53530982 | MS.gene45316:intron | 25.0% |
!!! | GAAGTATTCTAGTTTCTTAA+AGG | - | chr4.3:53533404-53533423 | None:intergenic | 25.0% |
!!! | GACTAATTTGTGTTTTTTTC+AGG | + | chr4.3:53532388-53532407 | MS.gene45316:intron | 25.0% |
!!! | TTTTATTTCACTGCAAAGTA+TGG | + | chr4.3:53533272-53533291 | MS.gene45316:CDS | 25.0% |
AAAAGAGTTGCATATGTTGA+AGG | - | chr4.3:53531809-53531828 | None:intergenic | 30.0% | |
AAATGCATTGGGAAATATCT+TGG | + | chr4.3:53533501-53533520 | MS.gene45316:CDS | 30.0% | |
ACTGATCAAAATCTTGAAGT+TGG | + | chr4.3:53533193-53533212 | MS.gene45316:CDS | 30.0% | |
AGCAATTCTTACTTACTATG+AGG | + | chr4.3:53531258-53531277 | MS.gene45316:CDS | 30.0% | |
AGTATCCATCACATACATTT+AGG | - | chr4.3:53532656-53532675 | None:intergenic | 30.0% | |
ATATATATCACCTCAATTCG+TGG | - | chr4.3:53530649-53530668 | None:intergenic | 30.0% | |
ATGAGGCAAAAATCAATACA+AGG | + | chr4.3:53531275-53531294 | MS.gene45316:CDS | 30.0% | |
ATTCCTTCAAAATGTGCATT+TGG | + | chr4.3:53531386-53531405 | MS.gene45316:intron | 30.0% | |
ATTCTATCTGTTTGTGAATG+AGG | - | chr4.3:53533631-53533650 | None:intergenic | 30.0% | |
ATTGGTATATGCATAGTTAG+TGG | + | chr4.3:53531494-53531513 | MS.gene45316:CDS | 30.0% | |
CAAAAATCAATACAAGGAAG+CGG | + | chr4.3:53531281-53531300 | MS.gene45316:CDS | 30.0% | |
CAAACTGAATCTCAATAGTA+AGG | - | chr4.3:53532361-53532380 | None:intergenic | 30.0% | |
CGAAAATGAAAAACATCTCT+CGG | + | chr4.3:53532693-53532712 | MS.gene45316:intron | 30.0% | |
CTAAAAAGAACCAAGAACAA+AGG | - | chr4.3:53532601-53532620 | None:intergenic | 30.0% | |
GATAATGTTGACATCTTTCT+TGG | + | chr4.3:53533310-53533329 | MS.gene45316:CDS | 30.0% | |
GTATCCATCACATACATTTA+GGG | - | chr4.3:53532655-53532674 | None:intergenic | 30.0% | |
TAAATATTCACTCTGGTTAG+CGG | + | chr4.3:53530902-53530921 | MS.gene45316:intron | 30.0% | |
TAATGTTGACATCTTTCTTG+GGG | + | chr4.3:53533312-53533331 | MS.gene45316:CDS | 30.0% | |
TACAGCAGACATAATAAAAG+TGG | - | chr4.3:53531048-53531067 | None:intergenic | 30.0% | |
TATCCGTTAAATATTCACTC+TGG | + | chr4.3:53530895-53530914 | MS.gene45316:intron | 30.0% | |
TATCTTCTGATAAGAATCCA+GGG | - | chr4.3:53532526-53532545 | None:intergenic | 30.0% | |
TATGGTTAATAGGTAAAGGA+TGG | + | chr4.3:53533572-53533591 | MS.gene45316:intron | 30.0% | |
TCAGAAAGTAGATACATTAC+CGG | - | chr4.3:53530857-53530876 | None:intergenic | 30.0% | |
TGGTTATGGTTAATAGGTAA+AGG | + | chr4.3:53533568-53533587 | MS.gene45316:intron | 30.0% | |
TTAAAACAATTTGAGCGCAA+AGG | + | chr4.3:53532422-53532441 | MS.gene45316:CDS | 30.0% | |
TTATTGTTGTAGTCTTTCCT+TGG | + | chr4.3:53531837-53531856 | MS.gene45316:intron | 30.0% | |
TTCCTTCAAAATGTGCATTT+GGG | + | chr4.3:53531387-53531406 | MS.gene45316:intron | 30.0% | |
TTTGCAGTGAAATAAAATGC+TGG | - | chr4.3:53533269-53533288 | None:intergenic | 30.0% | |
! | ATCTTGGTATTGTTTCTTCT+TGG | + | chr4.3:53533517-53533536 | MS.gene45316:CDS | 30.0% |
! | CTTGATTGGTTATGGTTAAT+AGG | + | chr4.3:53533562-53533581 | MS.gene45316:intron | 30.0% |
! | GTACTTTTCGCTATTCAATT+TGG | - | chr4.3:53532816-53532835 | None:intergenic | 30.0% |
!! | AAAACAACAAAAGTGGGTTA+AGG | + | chr4.3:53533053-53533072 | MS.gene45316:intron | 30.0% |
!! | AACTTCAAGATTTTGATCAG+TGG | - | chr4.3:53533194-53533213 | None:intergenic | 30.0% |
!! | AATGTATGTGATGGATACTA+TGG | + | chr4.3:53532657-53532676 | MS.gene45316:intron | 30.0% |
!! | TGGATACACACTATTTTTCT+TGG | + | chr4.3:53531312-53531331 | MS.gene45316:CDS | 30.0% |
!!! | ACAATTTTTTGACTTTGCAG+AGG | + | chr4.3:53531694-53531713 | MS.gene45316:intron | 30.0% |
AACACAAAGAAGCTCAAACA+AGG | - | chr4.3:53532172-53532191 | None:intergenic | 35.0% | |
AACCAAGAACAAAGGATGAA+AGG | - | chr4.3:53532593-53532612 | None:intergenic | 35.0% | |
AAGAAACTAGAATACTTCCG+AGG | + | chr4.3:53533406-53533425 | MS.gene45316:intron | 35.0% | |
ACCAAGCTAAATTAAGAGAG+AGG | + | chr4.3:53533605-53533624 | MS.gene45316:intron | 35.0% | |
ATATCTCACCGGATAGATAT+TGG | + | chr4.3:53532980-53532999 | MS.gene45316:intron | 35.0% | |
ATCCATGATCATGATTCATG+TGG | + | chr4.3:53532094-53532113 | MS.gene45316:intron | 35.0% | |
ATCCTTTCATCCTTTGTTCT+TGG | + | chr4.3:53532588-53532607 | MS.gene45316:intron | 35.0% | |
ATTCTGGATTCATGTATGAC+AGG | - | chr4.3:53531568-53531587 | None:intergenic | 35.0% | |
CAATCCCTAAATGTATGTGA+TGG | + | chr4.3:53532648-53532667 | MS.gene45316:intron | 35.0% | |
CTGCTCAAAACAACAAAAGT+GGG | + | chr4.3:53533047-53533066 | MS.gene45316:intron | 35.0% | |
GATTTAGCAACATCTGGTAA+AGG | + | chr4.3:53531455-53531474 | MS.gene45316:CDS | 35.0% | |
GGATTCTTATCAGAAGATAC+CGG | + | chr4.3:53532527-53532546 | MS.gene45316:CDS | 35.0% | |
GGGAAAATATGCTGCAATAA+TGG | + | chr4.3:53530751-53530770 | MS.gene45316:intron | 35.0% | |
GTATCTTCTGATAAGAATCC+AGG | - | chr4.3:53532527-53532546 | None:intergenic | 35.0% | |
TACCACATGAATCATGATCA+TGG | - | chr4.3:53532099-53532118 | None:intergenic | 35.0% | |
TAGTTGGATTTAGCAACATC+TGG | + | chr4.3:53531449-53531468 | MS.gene45316:intron | 35.0% | |
TCTGCGTATAAAGCTACAAA+AGG | + | chr4.3:53533775-53533794 | MS.gene45316:CDS | 35.0% | |
TCTGCTCAAAACAACAAAAG+TGG | + | chr4.3:53533046-53533065 | MS.gene45316:intron | 35.0% | |
TTCTTCACCTTATAGCCTTT+CGG | - | chr4.3:53533380-53533399 | None:intergenic | 35.0% | |
! | AACCCAAATGCACATTTTGA+AGG | - | chr4.3:53531392-53531411 | None:intergenic | 35.0% |
! | AAGAGCGTACCTGTAATAAA+TGG | - | chr4.3:53533123-53533142 | None:intergenic | 35.0% |
! | AGAAAGTACAAAGAACTGAG+AGG | - | chr4.3:53531114-53531133 | None:intergenic | 35.0% |
! | ATGCTGCAATAATGGTTTGT+TGG | + | chr4.3:53530759-53530778 | MS.gene45316:CDS | 35.0% |
! | CATGAATCCAGAATTTGTTC+AGG | + | chr4.3:53531574-53531593 | MS.gene45316:CDS | 35.0% |
! | GAAAGTACAAAGAACTGAGA+GGG | - | chr4.3:53531113-53531132 | None:intergenic | 35.0% |
! | GATGATATTTCTGCACAAAG+AGG | - | chr4.3:53531189-53531208 | None:intergenic | 35.0% |
! | TACGCAGAATTTTTCTGCAT+CGG | - | chr4.3:53533763-53533782 | None:intergenic | 35.0% |
! | TATTTCTGCACAAAGAGGAA+AGG | - | chr4.3:53531184-53531203 | None:intergenic | 35.0% |
! | TTGGTATTGTTTCTTCTTGG+AGG | + | chr4.3:53533520-53533539 | MS.gene45316:CDS | 35.0% |
! | TTTCCCAATGCATTTTGTTC+AGG | - | chr4.3:53533496-53533515 | None:intergenic | 35.0% |
!! | AAGCTCAAACAAGGTTGATA+AGG | - | chr4.3:53532163-53532182 | None:intergenic | 35.0% |
!! | ACTATTTTTCTTGGCCGTTT+TGG | + | chr4.3:53531321-53531340 | MS.gene45316:CDS | 35.0% |
!! | ATAATGGTTTGTTGGCTTCT+TGG | + | chr4.3:53530767-53530786 | MS.gene45316:CDS | 35.0% |
!! | TTTGTTGGCTTCTTGGAAAT+GGG | + | chr4.3:53530774-53530793 | MS.gene45316:CDS | 35.0% |
!!! | TTCTTGGAGGTATTTTTGCA+GGG | + | chr4.3:53533533-53533552 | MS.gene45316:CDS | 35.0% |
AAACCGTACTTCTCGAAATG+AGG | - | chr4.3:53532310-53532329 | None:intergenic | 40.0% | |
AAGAACTGCATGAATCAGAG+AGG | - | chr4.3:53532133-53532152 | None:intergenic | 40.0% | |
ACCTATTTACGTGTCGTAGT+TGG | + | chr4.3:53531433-53531452 | MS.gene45316:intron | 40.0% | |
ACTGCAAAGTATGGTACTCA+AGG | + | chr4.3:53533281-53533300 | MS.gene45316:CDS | 40.0% | |
AGACCTCATTTCGAGAAGTA+CGG | + | chr4.3:53532304-53532323 | MS.gene45316:intron | 40.0% | |
ATGCTGACCTGAACAAATTC+TGG | - | chr4.3:53531584-53531603 | None:intergenic | 40.0% | |
CAAAGTATGGTACTCAAGGT+TGG | + | chr4.3:53533285-53533304 | MS.gene45316:CDS | 40.0% | |
CTATCCGGTGAGATATGATT+AGG | - | chr4.3:53532976-53532995 | None:intergenic | 40.0% | |
CTGACATTGTCTATATTCCC+TGG | + | chr4.3:53532506-53532525 | MS.gene45316:CDS | 40.0% | |
GAACGGTAGTACTTCACAAT+TGG | - | chr4.3:53532225-53532244 | None:intergenic | 40.0% | |
GATACCGGATTACACAGTTT+AGG | + | chr4.3:53532542-53532561 | MS.gene45316:CDS | 40.0% | |
GATTACACAGTTTAGGCACA+TGG | + | chr4.3:53532549-53532568 | MS.gene45316:CDS | 40.0% | |
GCAGAAATATCATCCCTCTA+GGG | + | chr4.3:53531195-53531214 | MS.gene45316:intron | 40.0% | |
GCATCCTAATCATATCTCAC+CGG | + | chr4.3:53532969-53532988 | MS.gene45316:intron | 40.0% | |
GCCTCTCTCTTAATTTAGCT+TGG | - | chr4.3:53533609-53533628 | None:intergenic | 40.0% | |
GGACCTGAACAAAATGCATT+GGG | + | chr4.3:53533490-53533509 | MS.gene45316:CDS | 40.0% | |
GTATATCAGCCATTTGCAGT+TGG | + | chr4.3:53531229-53531248 | MS.gene45316:CDS | 40.0% | |
TAGCAACATCTGGTAAAGGA+GGG | + | chr4.3:53531459-53531478 | MS.gene45316:CDS | 40.0% | |
TATATCACCTCAATTCGTGG+TGG | - | chr4.3:53530646-53530665 | None:intergenic | 40.0% | |
TCCAACTACGACACGTAAAT+AGG | - | chr4.3:53531437-53531456 | None:intergenic | 40.0% | |
TCTTCACCTTATAGCCTTTC+GGG | - | chr4.3:53533379-53533398 | None:intergenic | 40.0% | |
TCTTTCTTGGGGATATCCAA+TGG | + | chr4.3:53533323-53533342 | MS.gene45316:CDS | 40.0% | |
TGCAGAAATATCATCCCTCT+AGG | + | chr4.3:53531194-53531213 | MS.gene45316:intron | 40.0% | |
TGCATAGTTAGTGGTGCATT+TGG | + | chr4.3:53531503-53531522 | MS.gene45316:CDS | 40.0% | |
TGTGCCTAAACTGTGTAATC+CGG | - | chr4.3:53532549-53532568 | None:intergenic | 40.0% | |
TGTTCAGGTCAGCATCATAA+TGG | + | chr4.3:53531589-53531608 | MS.gene45316:intron | 40.0% | |
TTAGCAACATCTGGTAAAGG+AGG | + | chr4.3:53531458-53531477 | MS.gene45316:CDS | 40.0% | |
TTGTTGTAGTCTTTCCTTGG+CGG | + | chr4.3:53531840-53531859 | MS.gene45316:intron | 40.0% | |
! | AAGGTCAGCTGAAACAGTTT+TGG | - | chr4.3:53532268-53532287 | None:intergenic | 40.0% |
! | ACAAGGAAGCGGATTCTATT+TGG | + | chr4.3:53531292-53531311 | MS.gene45316:CDS | 40.0% |
! | GAAATGGGTGTCTTTTCTCT+TGG | + | chr4.3:53530789-53530808 | MS.gene45316:CDS | 40.0% |
! | GGGTAACACTTGATTGGTTA+TGG | + | chr4.3:53533554-53533573 | MS.gene45316:intron | 40.0% |
!! | GTTTGTTGGCTTCTTGGAAA+TGG | + | chr4.3:53530773-53530792 | MS.gene45316:CDS | 40.0% |
!!! | CTTCTTGGAGGTATTTTTGC+AGG | + | chr4.3:53533532-53533551 | MS.gene45316:CDS | 40.0% |
!!! | TCTTGGAGGTATTTTTGCAG+GGG | + | chr4.3:53533534-53533553 | MS.gene45316:CDS | 40.0% |
!!! | TGAAACAGTTTTGGACCCTT+CGG | - | chr4.3:53532259-53532278 | None:intergenic | 40.0% |
ACAAGAGTAAGCACCCTAGA+GGG | - | chr4.3:53531211-53531230 | None:intergenic | 45.0% | |
ACATCTGGTAAAGGAGGGAT+TGG | + | chr4.3:53531464-53531483 | MS.gene45316:CDS | 45.0% | |
AGCATCAGGTGCTCTAACAT+CGG | + | chr4.3:53531869-53531888 | MS.gene45316:CDS | 45.0% | |
CATGCACAAGGAGGAATGAT+TGG | + | chr4.3:53531539-53531558 | MS.gene45316:CDS | 45.0% | |
CTTCACCTTATAGCCTTTCG+GGG | - | chr4.3:53533378-53533397 | None:intergenic | 45.0% | |
GCTAGTGTTCCAACTGCAAA+TGG | - | chr4.3:53531241-53531260 | None:intergenic | 45.0% | |
GCTGTAATACTCTTCTCGAG+CGG | + | chr4.3:53531062-53531081 | MS.gene45316:intron | 45.0% | |
GGAGGGATTGGAACATTCAT+TGG | + | chr4.3:53531476-53531495 | MS.gene45316:CDS | 45.0% | |
GGGACCTGAACAAAATGCAT+TGG | + | chr4.3:53533489-53533508 | MS.gene45316:intron | 45.0% | |
GTAAGACTCTATCGCACTCA+CGG | - | chr4.3:53532945-53532964 | None:intergenic | 45.0% | |
GTACTTCTCGAAATGAGGTC+TGG | - | chr4.3:53532305-53532324 | None:intergenic | 45.0% | |
GTATGTTGCAGCTGTCTGTT+GGG | + | chr4.3:53531004-53531023 | MS.gene45316:intron | 45.0% | |
GTTCAAAAGCAGCATCCGAA+GGG | + | chr4.3:53532241-53532260 | MS.gene45316:CDS | 45.0% | |
TACAAGAGTAAGCACCCTAG+AGG | - | chr4.3:53531212-53531231 | None:intergenic | 45.0% | |
TTAGCAGATGCTCATGCACA+AGG | + | chr4.3:53531527-53531546 | MS.gene45316:CDS | 45.0% | |
TTGCAGGGGTAACACTTGAT+TGG | + | chr4.3:53533548-53533567 | MS.gene45316:intron | 45.0% | |
! | CTGGTTCGTTATGATGCTTG+CGG | + | chr4.3:53530933-53530952 | MS.gene45316:intron | 45.0% |
!!! | CTTCGGATGCTGCTTTTGAA+CGG | - | chr4.3:53532242-53532261 | None:intergenic | 45.0% |
AAGTGAGAACACAGACAGCG+AGG | - | chr4.3:53533352-53533371 | None:intergenic | 50.0% | |
AGCTGCAACATACCCAAAGC+GGG | - | chr4.3:53530997-53531016 | None:intergenic | 50.0% | |
ATCACCTCAATTCGTGGTGG+AGG | - | chr4.3:53530643-53530662 | None:intergenic | 50.0% | |
CAGCACTCTGATGCTTAGCA+TGG | + | chr4.3:53531962-53531981 | MS.gene45316:intron | 50.0% | |
CAGCTGCAACATACCCAAAG+CGG | - | chr4.3:53530998-53531017 | None:intergenic | 50.0% | |
CGTTCAAAAGCAGCATCCGA+AGG | + | chr4.3:53532240-53532259 | MS.gene45316:CDS | 50.0% | |
CTGGTTAGCGGTGATATCTC+TGG | + | chr4.3:53530914-53530933 | MS.gene45316:intron | 50.0% | |
GGTAGTAGCCACCACAACAT+AGG | + | chr4.3:53533796-53533815 | MS.gene45316:CDS | 50.0% | |
GGTATGTTGCAGCTGTCTGT+TGG | + | chr4.3:53531003-53531022 | MS.gene45316:intron | 50.0% | |
TTCTGCCCCGAAAGGCTATA+AGG | + | chr4.3:53533370-53533389 | MS.gene45316:CDS | 50.0% | |
! | TCTAAGGACGGACTTCGCAA+AGG | + | chr4.3:53531927-53531946 | MS.gene45316:CDS | 50.0% |
!! | CTCGAGCGGACTATTTGGTT+GGG | + | chr4.3:53531076-53531095 | MS.gene45316:intron | 50.0% |
!! | CTCTTCTCGAGCGGACTATT+TGG | + | chr4.3:53531071-53531090 | MS.gene45316:intron | 50.0% |
!! | GTGCTCTAACATCGGCTTTG+AGG | + | chr4.3:53531877-53531896 | MS.gene45316:CDS | 50.0% |
!! | TCTCGAGCGGACTATTTGGT+TGG | + | chr4.3:53531075-53531094 | MS.gene45316:intron | 50.0% |
!!! | CTGGTTTTAAGCCCCGCTTT+GGG | + | chr4.3:53530982-53531001 | MS.gene45316:intron | 50.0% |
!!! | TCTGGTTTTAAGCCCCGCTT+TGG | + | chr4.3:53530981-53531000 | MS.gene45316:intron | 50.0% |
ACAGACAGCGAGGTAGCCAT+TGG | - | chr4.3:53533342-53533361 | None:intergenic | 55.0% | |
GCAGATGCTCATGCACAAGG+AGG | + | chr4.3:53531530-53531549 | MS.gene45316:CDS | 55.0% | |
GCTGCAACATACCCAAAGCG+GGG | - | chr4.3:53530996-53531015 | None:intergenic | 55.0% | |
GTTCTCACTTCTGCCCCGAA+AGG | + | chr4.3:53533362-53533381 | MS.gene45316:CDS | 55.0% | |
TCTGGATTCCAGCTGCAGCA+AGG | - | chr4.3:53532287-53532306 | None:intergenic | 55.0% | |
TGAGCCTCCACCACGAATTG+AGG | + | chr4.3:53530636-53530655 | MS.gene45316:CDS | 55.0% | |
TCAGCTGACCTTGCTGCAGC+TGG | + | chr4.3:53532276-53532295 | MS.gene45316:CDS | 60.0% | |
! | GAACTGAGAGGGCGTAAGCC+TGG | - | chr4.3:53531102-53531121 | None:intergenic | 60.0% |
! | GCGGACTATTTGGTTGGGCC+AGG | + | chr4.3:53531081-53531100 | MS.gene45316:intron | 60.0% |
CTGATGCTGCAGCACCGCCA+AGG | - | chr4.3:53531857-53531876 | None:intergenic | 65.0% | |
!! | CTTGGCGGTGCTGCAGCATC+AGG | + | chr4.3:53531855-53531874 | MS.gene45316:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.3 | gene | 53530625 | 53533825 | 53530625 | ID=MS.gene45316 |
chr4.3 | mRNA | 53530625 | 53533825 | 53530625 | ID=MS.gene45316.t1;Parent=MS.gene45316 |
chr4.3 | exon | 53530625 | 53530657 | 53530625 | ID=MS.gene45316.t1.exon1;Parent=MS.gene45316.t1 |
chr4.3 | CDS | 53530625 | 53530657 | 53530625 | ID=cds.MS.gene45316.t1;Parent=MS.gene45316.t1 |
chr4.3 | exon | 53530752 | 53530856 | 53530752 | ID=MS.gene45316.t1.exon2;Parent=MS.gene45316.t1 |
chr4.3 | CDS | 53530752 | 53530856 | 53530752 | ID=cds.MS.gene45316.t1;Parent=MS.gene45316.t1 |
chr4.3 | exon | 53531199 | 53531354 | 53531199 | ID=MS.gene45316.t1.exon3;Parent=MS.gene45316.t1 |
chr4.3 | CDS | 53531199 | 53531354 | 53531199 | ID=cds.MS.gene45316.t1;Parent=MS.gene45316.t1 |
chr4.3 | exon | 53531452 | 53531595 | 53531452 | ID=MS.gene45316.t1.exon4;Parent=MS.gene45316.t1 |
chr4.3 | CDS | 53531452 | 53531595 | 53531452 | ID=cds.MS.gene45316.t1;Parent=MS.gene45316.t1 |
chr4.3 | exon | 53531849 | 53531954 | 53531849 | ID=MS.gene45316.t1.exon5;Parent=MS.gene45316.t1 |
chr4.3 | CDS | 53531849 | 53531954 | 53531849 | ID=cds.MS.gene45316.t1;Parent=MS.gene45316.t1 |
chr4.3 | exon | 53532148 | 53532320 | 53532148 | ID=MS.gene45316.t1.exon6;Parent=MS.gene45316.t1 |
chr4.3 | CDS | 53532148 | 53532320 | 53532148 | ID=cds.MS.gene45316.t1;Parent=MS.gene45316.t1 |
chr4.3 | exon | 53532410 | 53532570 | 53532410 | ID=MS.gene45316.t1.exon7;Parent=MS.gene45316.t1 |
chr4.3 | CDS | 53532410 | 53532570 | 53532410 | ID=cds.MS.gene45316.t1;Parent=MS.gene45316.t1 |
chr4.3 | exon | 53533133 | 53533391 | 53533133 | ID=MS.gene45316.t1.exon8;Parent=MS.gene45316.t1 |
chr4.3 | CDS | 53533133 | 53533391 | 53533133 | ID=cds.MS.gene45316.t1;Parent=MS.gene45316.t1 |
chr4.3 | exon | 53533490 | 53533555 | 53533490 | ID=MS.gene45316.t1.exon9;Parent=MS.gene45316.t1 |
chr4.3 | CDS | 53533490 | 53533555 | 53533490 | ID=cds.MS.gene45316.t1;Parent=MS.gene45316.t1 |
chr4.3 | exon | 53533742 | 53533825 | 53533742 | ID=MS.gene45316.t1.exon10;Parent=MS.gene45316.t1 |
chr4.3 | CDS | 53533742 | 53533825 | 53533742 | ID=cds.MS.gene45316.t1;Parent=MS.gene45316.t1 |
Gene Sequence |
Protein sequence |