AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene043342

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene043342.t1 MTR_4g050990 98.068 414 8 0 1 414 1 414 0.0 827
MS.gene043342.t1 MTR_2g089520 98.068 414 8 0 1 414 1 414 0.0 827
MS.gene043342.t1 MTR_0008s0170 82.850 414 71 0 1 414 1 414 0.0 704
MS.gene043342.t1 MTR_0008s0130 77.053 414 95 0 1 414 1 414 0.0 665
MS.gene043342.t1 MTR_2g047968 77.561 410 92 0 1 410 1 410 0.0 631
MS.gene043342.t1 MTR_2g011600 69.608 408 122 2 7 412 14 421 0.0 580
MS.gene043342.t1 MTR_2g011580 70.526 380 111 1 34 412 1 380 0.0 548
MS.gene043342.t1 MTR_2g011600 68.871 363 111 2 52 412 8 370 0.0 509
MS.gene043342.t1 MTR_1g071120 71.633 349 90 3 11 358 53 393 2.05e-177 501
MS.gene043342.t1 MTR_8g007285 60.606 363 141 1 52 412 2 364 8.92e-147 421
MS.gene043342.t1 MTR_0003s0470 32.289 415 241 12 11 410 26 415 5.39e-54 185
MS.gene043342.t1 MTR_3g462280 30.673 401 251 7 18 410 42 423 2.96e-45 162
MS.gene043342.t1 MTR_4g114710 28.706 425 256 11 1 410 6 398 8.03e-41 149
MS.gene043342.t1 MTR_2g011530 71.739 92 25 1 278 368 2 93 1.14e-37 132
MS.gene043342.t1 MTR_2g011540 49.630 135 61 1 52 179 2 136 4.65e-36 129
MS.gene043342.t1 MTR_2g011560 38.060 134 32 2 177 310 17 99 3.79e-17 77.4
MS.gene043342.t1 MTR_2g011570 55.385 65 22 1 137 201 1 58 1.65e-13 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene043342.t1 AT4G05120 71.324 408 116 1 5 412 8 414 0.0 612
MS.gene043342.t1 AT4G05120 71.324 408 116 1 5 412 8 414 0.0 612
MS.gene043342.t1 AT4G05110 67.647 408 131 1 5 412 8 414 0.0 580
MS.gene043342.t1 AT4G05110 67.647 408 131 1 5 412 8 414 0.0 580
MS.gene043342.t1 AT4G05110 67.402 408 132 1 5 412 8 414 0.0 578
MS.gene043342.t1 AT4G05140 66.912 408 135 0 5 412 8 415 0.0 575
MS.gene043342.t1 AT4G05130 64.720 411 142 2 5 414 8 416 0.0 556
MS.gene043342.t1 AT3G09990 64.706 408 143 1 8 414 10 417 0.0 543
MS.gene043342.t1 AT1G61630 61.483 418 151 3 1 412 1 414 0.0 512
MS.gene043342.t1 AT1G70330 31.719 413 238 8 16 410 64 450 1.38e-51 179
MS.gene043342.t1 AT1G02630 29.298 413 252 9 5 410 10 389 1.93e-48 169
MS.gene043342.t1 AT1G02630 28.708 209 146 3 5 212 10 216 3.18e-24 103

Find 89 sgRNAs with CRISPR-Local

Find 179 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTCTTGAAATTCTTGAAAT+TGG 0.116609 2.2:-10299136 MS.gene043342:CDS
GTGCATTAACCTCTGCTTTA+AGG 0.117350 2.2:-10300051 MS.gene043342:CDS
TTACTACATTTACTTGTTTC+CGG 0.228601 2.2:-10301226 MS.gene043342:intron
GAAAGAAATAGTACTTCTTT+AGG 0.270591 2.2:+10299628 None:intergenic
AGCAGCATTTGATAATTCTA+AGG 0.310431 2.2:-10300017 MS.gene043342:CDS
GGGAAAATATGCTGCAATAT+TGG 0.315284 2.2:-10301310 MS.gene043342:CDS
GATAATGTTGACATCATTCT+TGG 0.317000 2.2:-10299019 MS.gene043342:CDS
ATCTGCACCCAAAGGTTATA+AGG 0.323238 2.2:-10298959 MS.gene043342:intron
GTACTTCTTTAGGTATTGTT+TGG 0.329362 2.2:+10299638 None:intergenic
AGAGTGTCAATGCATAAATT+AGG 0.353300 2.2:+10299449 None:intergenic
AGGTCTTACCTTATAACCTT+TGG 0.354635 2.2:+10298951 None:intergenic
CTATGTGGTTTGGCAGCATC+TGG 0.357354 2.2:-10300073 MS.gene043342:CDS
GGTCTTACCTTATAACCTTT+GGG 0.357526 2.2:+10298952 None:intergenic
ATATTGGTATGCTTCCTTCT+TGG 0.358786 2.2:-10301294 MS.gene043342:CDS
CTAGACTGGTTGTGGTTGAT+AGG 0.364036 2.2:-10298636 MS.gene043342:CDS
AAGCTCAAAGAATGTTGATA+TGG 0.364975 2.2:+10299780 None:intergenic
TACAATGTGTGGGATCTAAT+AGG 0.376699 2.2:-10299171 MS.gene043342:CDS
TAGCTGACCTGAATGAATTC+TGG 0.378851 2.2:+10300562 None:intergenic
GATACTGGAGCACATAGTTT+AGG 0.386930 2.2:-10299400 MS.gene043342:CDS
AAGATCAGCTGAAACCGTTT+TGG 0.400371 2.2:+10299675 None:intergenic
GTACGGTAGTATTTCACAAT+TGG 0.413573 2.2:+10299718 None:intergenic
ACAGTCTTTCCTATGTGGTT+TGG 0.413718 2.2:-10300083 MS.gene043342:intron
ATAATGTTGACATCATTCTT+GGG 0.414131 2.2:-10299018 MS.gene043342:CDS
ACTAGATTCAGGAACCTGTT+TGG 0.415644 2.2:-10300839 MS.gene043342:CDS
GGATTTCTGTCTGAAGATAC+TGG 0.422546 2.2:-10299415 MS.gene043342:CDS
GGGTCCAGAACAAAATGCTT+TGG 0.429540 2.2:-10298709 MS.gene043342:CDS
GTATGCTTCCTTCTTGGCAA+TGG 0.430207 2.2:-10301288 MS.gene043342:CDS
CATGTTCAAGGTGGAATGAT+TGG 0.433600 2.2:-10300604 MS.gene043342:CDS
CAAAAGTCAATACTAGATTC+AGG 0.435364 2.2:-10300850 MS.gene043342:CDS
CATGAAGCCAGAATTCATTC+AGG 0.440760 2.2:-10300569 MS.gene043342:intron
GTATCTTCAGACAGAAATCC+AGG 0.444209 2.2:+10299418 None:intergenic
GGTCCAGAACAAAATGCTTT+GGG 0.444913 2.2:-10298708 MS.gene043342:CDS
TAGTTGGATTTAGCAACATC+TGG 0.446987 2.2:-10300694 MS.gene043342:CDS
TTGGTGTTGTTTCTACTTGG+AGG 0.450252 2.2:-10298678 MS.gene043342:CDS
TGCTATATTGTCTTATAATG+AGG 0.452571 2.2:-10300873 MS.gene043342:CDS
TTGTTGGTGTTGTTTCTACT+TGG 0.466918 2.2:-10298681 MS.gene043342:CDS
AAATGCTTTGGGAAACTTGT+TGG 0.472777 2.2:-10298697 MS.gene043342:CDS
TCTAAGGATGGTCTTAGAAA+AGG 0.472918 2.2:-10300001 MS.gene043342:CDS
TGTGCAATTAGTGGTGCCTT+TGG 0.477018 2.2:-10300640 MS.gene043342:CDS
TGCAGAATTATCATCCCTCC+AGG 0.479683 2.2:-10300937 MS.gene043342:intron
GCAAGTGTTCCAACTGCAAA+TGG 0.482568 2.2:+10300893 None:intergenic
GGGTTACACTAGACTGGTTG+TGG 0.484518 2.2:-10298644 MS.gene043342:CDS
ACTGCAAAGTATGGTGATCA+AGG 0.485522 2.2:-10299048 MS.gene043342:CDS
ATTGGTATATGTGCAATTAG+TGG 0.486598 2.2:-10300649 MS.gene043342:CDS
ATGTTACAGTCTTTCCTATG+TGG 0.489292 2.2:-10300088 MS.gene043342:intron
TCAGCTGATCTTGCAGCTGG+TGG 0.503591 2.2:-10299664 MS.gene043342:CDS
AAAGACATCCATTGCCAAGA+AGG 0.509411 2.2:+10301280 None:intergenic
GTTTCAGCTGATCTTGCAGC+TGG 0.510600 2.2:-10299667 MS.gene043342:CDS
GTGTTCCAACTGCAAATGGC+TGG 0.520973 2.2:+10300897 None:intergenic
TGTAATTAACCTTAAAGCAG+AGG 0.522589 2.2:+10300042 None:intergenic
TTGCAGGGGTTACACTAGAC+TGG 0.523837 2.2:-10298650 MS.gene043342:CDS
ATTTCAAGAATTTCAAGAGT+GGG 0.530371 2.2:+10299139 None:intergenic
GATTTAGCAACATCTGGTAA+AGG 0.531613 2.2:-10300688 MS.gene043342:CDS
ACATCTGGTAAAGGAGGACT+TGG 0.542893 2.2:-10300679 MS.gene043342:CDS
ACAAACAGTGAGGTAACCAT+TGG 0.544603 2.2:+10298990 None:intergenic
TTTGCAGTGAAATAAAATGC+TGG 0.546823 2.2:+10299063 None:intergenic
GCATAAACCTCTAGACGTGT+TGG 0.547583 2.2:+10301423 None:intergenic
GTTGCAGATGCTCATGTTCA+AGG 0.549362 2.2:-10300616 MS.gene043342:CDS
TGTGGTTGATAGGCAAAGGT+TGG 0.549746 2.2:-10298626 MS.gene043342:CDS
CAAAGTATGGTGATCAAGGT+TGG 0.550801 2.2:-10299044 MS.gene043342:CDS
GCATTTGATAATTCTAAGGA+TGG 0.554074 2.2:-10300013 MS.gene043342:CDS
TCATTCTTGGGGCTATCCAA+TGG 0.554884 2.2:-10299006 MS.gene043342:CDS
TGCACACAAACAAGAGAGGA+AGG 0.556796 2.2:-10299521 MS.gene043342:CDS
GTATACCAGCCATTTGCAGT+TGG 0.574201 2.2:-10300902 MS.gene043342:CDS
TAAACCTCTAGACGTGTTGG+AGG 0.581439 2.2:+10301426 None:intergenic
AGCATCAGAAGGATCCAAAA+CGG 0.581586 2.2:-10299689 MS.gene043342:CDS
TAATGTTGACATCATTCTTG+GGG 0.600627 2.2:-10299017 MS.gene043342:CDS
AATGAATTCTGGCTTCATGT+AGG 0.600985 2.2:+10300573 None:intergenic
TGAGCCTCCAACACGTCTAG+AGG 0.604316 2.2:-10301430 MS.gene043342:intron
AATTTCAAGAATTTCAAGAG+TGG 0.605836 2.2:+10299138 None:intergenic
TTAGCAACATCTGGTAAAGG+AGG 0.617570 2.2:-10300685 MS.gene043342:CDS
CAGATGCTGCCAAACCACAT+AGG 0.618573 2.2:+10300074 None:intergenic
TAATTGCAATGTACAATGTG+TGG 0.621011 2.2:-10299182 MS.gene043342:CDS
CGTACAAAAGCAGCATCAGA+AGG 0.622959 2.2:-10299700 MS.gene043342:CDS
ATGAGCATCTGCAACTCCAA+AGG 0.623544 2.2:+10300624 None:intergenic
AATTGCAATGTACAATGTGT+GGG 0.632930 2.2:-10299181 MS.gene043342:CDS
GTTATGACATCTGCACCCAA+AGG 0.634499 2.2:-10298967 MS.gene043342:CDS
TGGAGGCTCAACGTTGACCA+TGG 0.638186 2.2:+10301443 None:intergenic
TATCTTCAGACAGAAATCCA+GGG 0.655976 2.2:+10299419 None:intergenic
ACAAGTGTAAGCACCCTGGA+GGG 0.662948 2.2:+10300923 None:intergenic
GTATACAAGTGTAAGCACCC+TGG 0.665189 2.2:+10300919 None:intergenic
GAGCACATAGTTTAGGAACA+TGG 0.666302 2.2:-10299393 MS.gene043342:intron
TGGTTGTGGTTGATAGGCAA+AGG 0.669026 2.2:-10298630 MS.gene043342:CDS
GCACACAAACAAGAGAGGAA+GGG 0.670991 2.2:-10299520 MS.gene043342:CDS
ATCATGCACACAAACAAGAG+AGG 0.673529 2.2:-10299525 MS.gene043342:CDS
TACAAGTGTAAGCACCCTGG+AGG 0.676424 2.2:+10300922 None:intergenic
GCAGAATTATCATCCCTCCA+GGG 0.701785 2.2:-10300936 MS.gene043342:intron
GCAGATGCTCATGTTCAAGG+TGG 0.722859 2.2:-10300613 MS.gene043342:CDS
ATGTCATAACACAAACAGTG+AGG 0.743595 2.2:+10298980 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATTATTATCACATTATA+AGG + chr2.2:10300502-10300521 None:intergenic 10.0%
!!! ATTAAAATTATTAGCTTTTT+AGG + chr2.2:10299746-10299765 None:intergenic 10.0%
!!! TTATGTTTTAATTTATTGTA+GGG - chr2.2:10301335-10301354 MS.gene043342:intron 10.0%
!!! TTTATGTTTTAATTTATTGT+AGG - chr2.2:10301334-10301353 MS.gene043342:intron 10.0%
!! AAAATTACCAAAGATTTAAA+AGG + chr2.2:10300715-10300734 None:intergenic 15.0%
!! CATAAATATTAATGTGAATT+TGG + chr2.2:10301320-10301339 None:intergenic 15.0%
!! TATTATAGTAGTGTTTAATT+TGG - chr2.2:10301144-10301163 MS.gene043342:intron 15.0%
!!! AATAATTTTAATTTCTATGG+TGG - chr2.2:10299754-10299773 MS.gene043342:CDS 15.0%
!!! ATTAGATGAAATTTTGATTA+TGG + chr2.2:10300130-10300149 None:intergenic 15.0%
!!! GCTAATAATTTTAATTTCTA+TGG - chr2.2:10299751-10299770 MS.gene043342:CDS 15.0%
!!! TATTCTTTTTGTTAATTATC+CGG + chr2.2:10299003-10299022 None:intergenic 15.0%
!!! TTTCAATTTTTTGTTGTTAT+TGG - chr2.2:10298723-10298742 MS.gene043342:intron 15.0%
!! AAACCAAACATAACAATTTA+TGG + chr2.2:10299684-10299703 None:intergenic 20.0%
!! ACATTAAATTACAACATACA+AGG + chr2.2:10299052-10299071 None:intergenic 20.0%
!! ATCAAACATAAACGAAATTA+TGG + chr2.2:10299629-10299648 None:intergenic 20.0%
!! ATTTGGATTTCATATAGTAT+AGG + chr2.2:10301303-10301322 None:intergenic 20.0%
!! CTAAATAGTATATAGAGTAA+TGG + chr2.2:10300223-10300242 None:intergenic 20.0%
!! TCCAACTACATTAAATTTAT+TGG + chr2.2:10299358-10299377 None:intergenic 20.0%
!! TCCAATAAATTTAATGTAGT+TGG - chr2.2:10299354-10299373 MS.gene043342:intron 20.0%
!! TTTATGTTTGATTCTATCTT+TGG - chr2.2:10299637-10299656 MS.gene043342:intron 20.0%
!! TTTGGATTTCATATAGTATA+GGG + chr2.2:10301302-10301321 None:intergenic 20.0%
!!! AGTTGTGCTTATAATTTTTT+AGG - chr2.2:10300846-10300865 MS.gene043342:CDS 20.0%
!!! ATTTTACGTTCAATTAATTC+AGG - chr2.2:10299886-10299905 MS.gene043342:intron 20.0%
!!! GATAATAATTTTCCTTTTTC+AGG - chr2.2:10300510-10300529 MS.gene043342:intron 20.0%
!!! GATTTTTATCGATTTATGTT+AGG + chr2.2:10299835-10299854 None:intergenic 20.0%
!!! TATTTATGCTTTAAGGATAT+TGG + chr2.2:10301273-10301292 None:intergenic 20.0%
!!! TATTTCACAATTGGTATTTT+AGG + chr2.2:10300340-10300359 None:intergenic 20.0%
!!! TTTTTTCATAACCACTTTTT+TGG - chr2.2:10299257-10299276 MS.gene043342:intron 20.0%
! AACCTTAATTCCTTTACTTT+AGG - chr2.2:10299318-10299337 MS.gene043342:intron 25.0%
! AATTTCAAGAATTTCAAGAG+TGG + chr2.2:10300929-10300948 None:intergenic 25.0%
! ACTACTATAATATACTCTCA+AGG + chr2.2:10301136-10301155 None:intergenic 25.0%
! ACTCTTGAAATTCTTGAAAT+TGG - chr2.2:10300928-10300947 MS.gene043342:CDS 25.0%
! ATAATGTTGACATCATTCTT+GGG - chr2.2:10301046-10301065 MS.gene043342:intron 25.0%
! ATCCTAAAGTAAAGGAATTA+AGG + chr2.2:10299323-10299342 None:intergenic 25.0%
! ATCTATGATACTTACATCTA+TGG - chr2.2:10299947-10299966 MS.gene043342:intron 25.0%
! ATTTCAAGAATTTCAAGAGT+GGG + chr2.2:10300928-10300947 None:intergenic 25.0%
! CAATAGCAACAAATAAGAAT+TGG + chr2.2:10300177-10300196 None:intergenic 25.0%
! GAAAGAAATAGTACTTCTTT+AGG + chr2.2:10300439-10300458 None:intergenic 25.0%
! TACTATTAACACCAAAAAAG+TGG + chr2.2:10299271-10299290 None:intergenic 25.0%
! TCAAAATCATCCTAAAGTAA+AGG + chr2.2:10299331-10299350 None:intergenic 25.0%
! TGACCATAAATTGTTATGTT+TGG - chr2.2:10299678-10299697 MS.gene043342:CDS 25.0%
! TGCTATATTGTCTTATAATG+AGG - chr2.2:10299191-10299210 MS.gene043342:CDS 25.0%
! TTACTACATTTACTTGTTTC+CGG - chr2.2:10298838-10298857 MS.gene043342:intron 25.0%
!! AAAAAAGAGTATATCCAAAC+AGG + chr2.2:10299242-10299261 None:intergenic 25.0%
!! TCGCAATTTAGAACTATAAT+CGG + chr2.2:10299530-10299549 None:intergenic 25.0%
!! TGTTGTTATTGGTATTCATA+GGG - chr2.2:10298734-10298753 MS.gene043342:intron 25.0%
!! TTGTTGTTATTGGTATTCAT+AGG - chr2.2:10298733-10298752 MS.gene043342:intron 25.0%
!!! TAGTATTCTGAAGTTTGATT+AGG + chr2.2:10298969-10298988 None:intergenic 25.0%
!!! TTTTATTTCACTGCAAAGTA+TGG - chr2.2:10301007-10301026 MS.gene043342:intron 25.0%
AAAGTAGACCAATTACATAC+CGG + chr2.2:10298860-10298879 None:intergenic 30.0%
AAGCTCAAAGAATGTTGATA+TGG + chr2.2:10300287-10300306 None:intergenic 30.0%
AATTGCAATGTACAATGTGT+GGG - chr2.2:10300883-10300902 MS.gene043342:CDS 30.0%
ATTGGTATATGTGCAATTAG+TGG - chr2.2:10299415-10299434 MS.gene043342:CDS 30.0%
CAAAAGTCAATACTAGATTC+AGG - chr2.2:10299214-10299233 MS.gene043342:intron 30.0%
GATAATGTTGACATCATTCT+TGG - chr2.2:10301045-10301064 MS.gene043342:intron 30.0%
GATCTGGTATTTATGCTTTA+AGG + chr2.2:10301280-10301299 None:intergenic 30.0%
TAATGTTGACATCATTCTTG+GGG - chr2.2:10301047-10301066 MS.gene043342:intron 30.0%
TAATTGCAATGTACAATGTG+TGG - chr2.2:10300882-10300901 MS.gene043342:CDS 30.0%
TCTAGAGGTTTATGCTTAAT+TGG - chr2.2:10298649-10298668 MS.gene043342:CDS 30.0%
TGTAATTAACCTTAAAGCAG+AGG + chr2.2:10300025-10300044 None:intergenic 30.0%
TTACCAAAGATTTAAAAGGC+AGG + chr2.2:10300711-10300730 None:intergenic 30.0%
TTTATCTACAGCAATCCATT+AGG + chr2.2:10300791-10300810 None:intergenic 30.0%
TTTCATATAGTATAGGGATC+TGG + chr2.2:10301296-10301315 None:intergenic 30.0%
TTTCTGAGTGAAGTAGTTAT+TGG - chr2.2:10298926-10298945 MS.gene043342:intron 30.0%
TTTGCAGTGAAATAAAATGC+TGG + chr2.2:10301004-10301023 None:intergenic 30.0%
! AGAGTGTCAATGCATAAATT+AGG + chr2.2:10300618-10300637 None:intergenic 30.0%
! AGCAGCATTTGATAATTCTA+AGG - chr2.2:10300047-10300066 MS.gene043342:CDS 30.0%
! GCATTTGATAATTCTAAGGA+TGG - chr2.2:10300051-10300070 MS.gene043342:CDS 30.0%
! GTACTTCTTTAGGTATTGTT+TGG + chr2.2:10300429-10300448 None:intergenic 30.0%
! TTTTGTATCCATACATCTGT+CGG + chr2.2:10299792-10299811 None:intergenic 30.0%
!! AGTAGTGTTTAATTTGGAAC+CGG - chr2.2:10301150-10301169 MS.gene043342:intron 30.0%
!! TATTCTGAAGTTTGATTAGG+AGG + chr2.2:10298966-10298985 None:intergenic 30.0%
!! TTATGCTTTAAGGATATTGG+TGG + chr2.2:10301270-10301289 None:intergenic 30.0%
!!! AATTTTCCTTTTTCAGGATG+AGG - chr2.2:10300516-10300535 MS.gene043342:intron 30.0%
ACTTGTTTCCGGTATGTAAT+TGG - chr2.2:10298849-10298868 MS.gene043342:intron 35.0%
AGGTCTTACCTTATAACCTT+TGG + chr2.2:10301116-10301135 None:intergenic 35.0%
ATATTGGTATGCTTCCTTCT+TGG - chr2.2:10298770-10298789 MS.gene043342:intron 35.0%
ATGTCATAACACAAACAGTG+AGG + chr2.2:10301087-10301106 None:intergenic 35.0%
ATGTTACAGTCTTTCCTATG+TGG - chr2.2:10299976-10299995 MS.gene043342:intron 35.0%
ATTCAATTCCGACAGATGTA+TGG - chr2.2:10299781-10299800 MS.gene043342:CDS 35.0%
CTTCACTCAGAAATCAAACT+CGG + chr2.2:10298919-10298938 None:intergenic 35.0%
GATGGCTGTTTGATCAAAAT+CGG - chr2.2:10301212-10301231 MS.gene043342:intron 35.0%
GATTTAGCAACATCTGGTAA+AGG - chr2.2:10299376-10299395 MS.gene043342:intron 35.0%
GCGATTCATAATTGCAATTG+TGG - chr2.2:10299546-10299565 MS.gene043342:intron 35.0%
GGGAAAATATGCTGCAATAT+TGG - chr2.2:10298754-10298773 MS.gene043342:intron 35.0%
GGTCTTACCTTATAACCTTT+GGG + chr2.2:10301115-10301134 None:intergenic 35.0%
GTACGGTAGTATTTCACAAT+TGG + chr2.2:10300349-10300368 None:intergenic 35.0%
TAAGCGTGAGTTTGATTATG+CGG + chr2.2:10299928-10299947 None:intergenic 35.0%
TACAATGTGTGGGATCTAAT+AGG - chr2.2:10300893-10300912 MS.gene043342:CDS 35.0%
TAGTTGGATTTAGCAACATC+TGG - chr2.2:10299370-10299389 MS.gene043342:intron 35.0%
TATCTTCAGACAGAAATCCA+GGG + chr2.2:10300648-10300667 None:intergenic 35.0%
TTCACTCAGAAATCAAACTC+GGG + chr2.2:10298918-10298937 None:intergenic 35.0%
TTGATCAAAATCGGATAGTC+TGG - chr2.2:10301221-10301240 MS.gene043342:intron 35.0%
! CTACCTGCCTTTTAAATCTT+TGG - chr2.2:10300705-10300724 MS.gene043342:intron 35.0%
! GAATACTAGAACGACTTTTC+CGG - chr2.2:10298981-10299000 MS.gene043342:CDS 35.0%
! TCTAAGGATGGTCTTAGAAA+AGG - chr2.2:10300063-10300082 MS.gene043342:CDS 35.0%
! TTTTACGAATCGAAACGACA+AGG - chr2.2:10300758-10300777 MS.gene043342:intron 35.0%
!! AAATGCTTTGGGAAACTTGT+TGG - chr2.2:10301367-10301386 MS.gene043342:intron 35.0%
!! AATGAATTCTGGCTTCATGT+AGG + chr2.2:10299494-10299513 None:intergenic 35.0%
!! TTGTTGGTGTTGTTTCTACT+TGG - chr2.2:10301383-10301402 MS.gene043342:intron 35.0%
!! TTTCCCAAAGCATTTTGTTC+TGG + chr2.2:10301362-10301381 None:intergenic 35.0%
!!! TACTTGGAGGTATTTTTGCA+GGG - chr2.2:10301399-10301418 MS.gene043342:intron 35.0%
AAAGACATCCATTGCCAAGA+AGG + chr2.2:10298787-10298806 None:intergenic 40.0%
ACAAACAGTGAGGTAACCAT+TGG + chr2.2:10301077-10301096 None:intergenic 40.0%
ACAGTCTTTCCTATGTGGTT+TGG - chr2.2:10299981-10300000 MS.gene043342:intron 40.0%
ACTAGATTCAGGAACCTGTT+TGG - chr2.2:10299225-10299244 MS.gene043342:intron 40.0%
ACTGCAAAGTATGGTGATCA+AGG - chr2.2:10301016-10301035 MS.gene043342:intron 40.0%
AGCATCAGAAGGATCCAAAA+CGG - chr2.2:10300375-10300394 MS.gene043342:intron 40.0%
ATATCTCGAATGCGTGAATG+CGG + chr2.2:10301191-10301210 None:intergenic 40.0%
ATCATGCACACAAACAAGAG+AGG - chr2.2:10300539-10300558 MS.gene043342:intron 40.0%
ATCTGCACCCAAAGGTTATA+AGG - chr2.2:10301105-10301124 MS.gene043342:intron 40.0%
CAAAGTATGGTGATCAAGGT+TGG - chr2.2:10301020-10301039 MS.gene043342:intron 40.0%
CATGAAGCCAGAATTCATTC+AGG - chr2.2:10299495-10299514 MS.gene043342:CDS 40.0%
CATGATCCTCATCCTGAAAA+AGG + chr2.2:10300525-10300544 None:intergenic 40.0%
CATGTTCAAGGTGGAATGAT+TGG - chr2.2:10299460-10299479 MS.gene043342:CDS 40.0%
GAGCACATAGTTTAGGAACA+TGG - chr2.2:10300671-10300690 MS.gene043342:CDS 40.0%
GATACTGGAGCACATAGTTT+AGG - chr2.2:10300664-10300683 MS.gene043342:CDS 40.0%
GGATTTCTGTCTGAAGATAC+TGG - chr2.2:10300649-10300668 MS.gene043342:CDS 40.0%
GGTCCAGAACAAAATGCTTT+GGG - chr2.2:10301356-10301375 MS.gene043342:intron 40.0%
GTATCTTCAGACAGAAATCC+AGG + chr2.2:10300649-10300668 None:intergenic 40.0%
GTGCATTAACCTCTGCTTTA+AGG - chr2.2:10300013-10300032 MS.gene043342:CDS 40.0%
TACAGCAATCCATTAGGAGT+TGG + chr2.2:10300785-10300804 None:intergenic 40.0%
TAGCTGACCTGAATGAATTC+TGG + chr2.2:10299505-10299524 None:intergenic 40.0%
TTAGCAACATCTGGTAAAGG+AGG - chr2.2:10299379-10299398 MS.gene043342:intron 40.0%
! AAGATCAGCTGAAACCGTTT+TGG + chr2.2:10300392-10300411 None:intergenic 40.0%
! CTGCATTTTACGCGATATCA+AGG - chr2.2:10299578-10299597 MS.gene043342:intron 40.0%
! GCAATGGATGTCTTTTCTCT+TGG - chr2.2:10298792-10298811 MS.gene043342:intron 40.0%
! GGAGGACTTGGAACTTTTAT+TGG - chr2.2:10299397-10299416 MS.gene043342:CDS 40.0%
! TCAAACTCGGGTCTTATGAA+AGG + chr2.2:10298906-10298925 None:intergenic 40.0%
! TTGACACTCTCTATTTTCCC+TGG - chr2.2:10300628-10300647 MS.gene043342:CDS 40.0%
!! TTGGTGTTGTTTCTACTTGG+AGG - chr2.2:10301386-10301405 MS.gene043342:intron 40.0%
!!! ACCGTTCGGTTTTGATTGAA+CGG - chr2.2:10301244-10301263 MS.gene043342:CDS 40.0%
!!! ACTTGGAGGTATTTTTGCAG+GGG - chr2.2:10301400-10301419 MS.gene043342:intron 40.0%
!!! CTACTTGGAGGTATTTTTGC+AGG - chr2.2:10301398-10301417 MS.gene043342:intron 40.0%
!!! CTTCTGATGCTGCTTTTGTA+CGG + chr2.2:10300366-10300385 None:intergenic 40.0%
ACATCTGGTAAAGGAGGACT+TGG - chr2.2:10299385-10299404 MS.gene043342:intron 45.0%
ATGAGCATCTGCAACTCCAA+AGG + chr2.2:10299443-10299462 None:intergenic 45.0%
CGTACAAAAGCAGCATCAGA+AGG - chr2.2:10300364-10300383 MS.gene043342:intron 45.0%
GCAAGTGTTCCAACTGCAAA+TGG + chr2.2:10299174-10299193 None:intergenic 45.0%
GCACACAAACAAGAGAGGAA+GGG - chr2.2:10300544-10300563 MS.gene043342:intron 45.0%
GCAGAATTATCATCCCTCCA+GGG - chr2.2:10299128-10299147 MS.gene043342:CDS 45.0%
GCATAAACCTCTAGACGTGT+TGG + chr2.2:10298644-10298663 None:intergenic 45.0%
GCCGTTCAATCAAAACCGAA+CGG + chr2.2:10301248-10301267 None:intergenic 45.0%
GGGTCCAGAACAAAATGCTT+TGG - chr2.2:10301355-10301374 MS.gene043342:intron 45.0%
GTATACAAGTGTAAGCACCC+TGG + chr2.2:10299148-10299167 None:intergenic 45.0%
GTATACCAGCCATTTGCAGT+TGG - chr2.2:10299162-10299181 MS.gene043342:CDS 45.0%
GTATGCTTCCTTCTTGGCAA+TGG - chr2.2:10298776-10298795 MS.gene043342:intron 45.0%
GTTATGACATCTGCACCCAA+AGG - chr2.2:10301097-10301116 MS.gene043342:intron 45.0%
GTTGCAGATGCTCATGTTCA+AGG - chr2.2:10299448-10299467 MS.gene043342:CDS 45.0%
TAAACCTCTAGACGTGTTGG+AGG + chr2.2:10298641-10298660 None:intergenic 45.0%
TATCTCGAATGCGTGAATGC+GGG + chr2.2:10301190-10301209 None:intergenic 45.0%
TCACGCATTCGAGATATCGA+TGG - chr2.2:10301194-10301213 MS.gene043342:intron 45.0%
TCATTCTTGGGGCTATCCAA+TGG - chr2.2:10301058-10301077 MS.gene043342:intron 45.0%
TGCACACAAACAAGAGAGGA+AGG - chr2.2:10300543-10300562 MS.gene043342:intron 45.0%
TGCAGAATTATCATCCCTCC+AGG - chr2.2:10299127-10299146 MS.gene043342:CDS 45.0%
TGTGCAATTAGTGGTGCCTT+TGG - chr2.2:10299424-10299443 MS.gene043342:CDS 45.0%
! CTAGACTGGTTGTGGTTGAT+AGG - chr2.2:10301428-10301447 MS.gene043342:intron 45.0%
!! TGGTTGTGGTTGATAGGCAA+AGG - chr2.2:10301434-10301453 MS.gene043342:CDS 45.0%
!! TGTGGTTGATAGGCAAAGGT+TGG - chr2.2:10301438-10301457 MS.gene043342:CDS 45.0%
!!! AATTTGAAATTAAAATAAAA+TGG + chr2.2:10300739-10300758 None:intergenic 5.0%
ACAAGTGTAAGCACCCTGGA+GGG + chr2.2:10299144-10299163 None:intergenic 50.0%
ATCGGATAGTCTGGACCGTT+CGG - chr2.2:10301230-10301249 MS.gene043342:CDS 50.0%
CAGATGCTGCCAAACCACAT+AGG + chr2.2:10299993-10300012 None:intergenic 50.0%
CGACAAGGACCAACTCCTAA+TGG - chr2.2:10300773-10300792 MS.gene043342:intron 50.0%
GCAGATGCTCATGTTCAAGG+TGG - chr2.2:10299451-10299470 MS.gene043342:CDS 50.0%
GTGTTCCAACTGCAAATGGC+TGG + chr2.2:10299170-10299189 None:intergenic 50.0%
GTTTCAGCTGATCTTGCAGC+TGG - chr2.2:10300397-10300416 MS.gene043342:intron 50.0%
TACAAGTGTAAGCACCCTGG+AGG + chr2.2:10299145-10299164 None:intergenic 50.0%
TTGCAGGGGTTACACTAGAC+TGG - chr2.2:10301414-10301433 MS.gene043342:intron 50.0%
! CTATGTGGTTTGGCAGCATC+TGG - chr2.2:10299991-10300010 MS.gene043342:intron 50.0%
! GGGTTACACTAGACTGGTTG+TGG - chr2.2:10301420-10301439 MS.gene043342:intron 50.0%
! TAATTTGGAACCGGCTCCCT+GGG - chr2.2:10301159-10301178 MS.gene043342:intron 50.0%
! TTAATTTGGAACCGGCTCCC+TGG - chr2.2:10301158-10301177 MS.gene043342:intron 50.0%
GTGAATGCGGGAAATCCCCA+GGG + chr2.2:10301178-10301197 None:intergenic 55.0%
TCAGCTGATCTTGCAGCTGG+TGG - chr2.2:10300400-10300419 MS.gene043342:intron 55.0%
TGAGCCTCCAACACGTCTAG+AGG - chr2.2:10298634-10298653 MS.gene043342:CDS 55.0%
! AATTTGGAACCGGCTCCCTG+GGG - chr2.2:10301160-10301179 MS.gene043342:intron 55.0%
CGTGAATGCGGGAAATCCCC+AGG + chr2.2:10301179-10301198 None:intergenic 60.0%
GCGGGAAATCCCCAGGGAGC+CGG + chr2.2:10301172-10301191 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 10298623 10301463 10298623 ID=MS.gene043342
chr2.2 mRNA 10298623 10301463 10298623 ID=MS.gene043342.t1;Parent=MS.gene043342
chr2.2 exon 10301431 10301463 10301431 ID=MS.gene043342.t1.exon1;Parent=MS.gene043342.t1
chr2.2 CDS 10301431 10301463 10301431 ID=cds.MS.gene043342.t1;Parent=MS.gene043342.t1
chr2.2 exon 10301227 10301331 10301227 ID=MS.gene043342.t1.exon2;Parent=MS.gene043342.t1
chr2.2 CDS 10301227 10301331 10301227 ID=cds.MS.gene043342.t1;Parent=MS.gene043342.t1
chr2.2 exon 10300799 10300954 10300799 ID=MS.gene043342.t1.exon3;Parent=MS.gene043342.t1
chr2.2 CDS 10300799 10300954 10300799 ID=cds.MS.gene043342.t1;Parent=MS.gene043342.t1
chr2.2 exon 10300570 10300713 10300570 ID=MS.gene043342.t1.exon4;Parent=MS.gene043342.t1
chr2.2 CDS 10300570 10300713 10300570 ID=cds.MS.gene043342.t1;Parent=MS.gene043342.t1
chr2.2 exon 10299996 10300101 10299996 ID=MS.gene043342.t1.exon5;Parent=MS.gene043342.t1
chr2.2 CDS 10299996 10300101 10299996 ID=cds.MS.gene043342.t1;Parent=MS.gene043342.t1
chr2.2 exon 10299642 10299814 10299642 ID=MS.gene043342.t1.exon6;Parent=MS.gene043342.t1
chr2.2 CDS 10299642 10299814 10299642 ID=cds.MS.gene043342.t1;Parent=MS.gene043342.t1
chr2.2 exon 10299394 10299554 10299394 ID=MS.gene043342.t1.exon7;Parent=MS.gene043342.t1
chr2.2 CDS 10299394 10299554 10299394 ID=cds.MS.gene043342.t1;Parent=MS.gene043342.t1
chr2.2 exon 10298960 10299218 10298960 ID=MS.gene043342.t1.exon8;Parent=MS.gene043342.t1
chr2.2 CDS 10298960 10299218 10298960 ID=cds.MS.gene043342.t1;Parent=MS.gene043342.t1
chr2.2 exon 10298623 10298730 10298623 ID=MS.gene043342.t1.exon9;Parent=MS.gene043342.t1
chr2.2 CDS 10298623 10298730 10298623 ID=cds.MS.gene043342.t1;Parent=MS.gene043342.t1
Gene Sequence

>MS.gene043342

ATGGTCAACGTTGAGCCTCCAACACGTCTAGAGGTTTATGCTTAATTGGATCTCTTACTACTTTTGTTTGCTTAAGAATGCAAAGTGAACTTTTTCTTAATTTCAATTTTTTGTTGTTATTGGTATTCATAGGGAAAATATGCTGCAATATTGGTATGCTTCCTTCTTGGCAATGGATGTCTTTTCTCTTGGAACAGTATGCTCACAATAGAAGATTACTACATTTACTTGTTTCCGGTATGTAATTGGTCTACTTTTAATGACATATTTTGTTTCATTTCCTTTCATAAGACCCGAGTTTGATTTCTGAGTGAAGTAGTTATTGGTCAGACTTTACTTACCTCCTAATCAAACTTCAGAATACTAGAACGACTTTTCCGGATAATTAACAAAAAGAATATTTCTTACACTTAGTTATGTGCTTCTCCTTGTATGTTGTAATTTAATGTTGAAAACTAGAATCATCTTGTAAAGAAATAATTCAATTAATTAATTTTTCTCATGTGCAGAATTATCATCCCTCCAGGGTGCTTACACTTGTATACCAGCCATTTGCAGTTGGAACACTTGCTATATTGTCTTATAATGAGGCAAAAGTCAATACTAGATTCAGGAACCTGTTTGGATATACTCTTTTTTTCATAACCACTTTTTTGGTGTTAATAGTAAGTGCTTTATCTATTCAACTAATTGTGAACCTTAATTCCTTTACTTTAGGATGATTTTGATTTTCCAATAAATTTAATGTAGTTGGATTTAGCAACATCTGGTAAAGGAGGACTTGGAACTTTTATTGGTATATGTGCAATTAGTGGTGCCTTTGGAGTTGCAGATGCTCATGTTCAAGGTGGAATGATTGGAGACTTGTCCTACATGAAGCCAGAATTCATTCAGGTCAGCTATACCGATTATAGTTCTAAATTGCGATTCATAATTGCAATTGTGGTTACAACAGCTGCATTTTACGCGATATCAAGGTTTGCAGCGCAATTGTAAGTTGTAACCATAATTTCGTTTATGTTTGATTCTATCTTTGGATTTAGTCAAACGTGATTTGACCATAAATTGTTATGTTTGGTTTTTGACTTTATGATTGAATTTAGACTCAATATCAATTTTACCTAAAAAGCTAATAATTTTAATTTCTATGGTGGCGTGATTCAATTCCGACAGATGTATGGATACAAAAACAATTATGATCTAAACTATCCTAACATAAATCGATAAAAATCATATTTATGTGAATGTATTCTAACATTAATCATTTTACGTTCAATTAATTCAGGCAAAATCAAATTGTCACCGCATAATCAAACTCACGCTTATCTATGATACTTACATCTATGGTTTTTAATGTTACAGTCTTTCCTATGTGGTTTGGCAGCATCTGGTGCATTAACCTCTGCTTTAAGGTTAATTACAAAAGCAGCATTTGATAATTCTAAGGATGGTCTTAGAAAAGGAGCTAGTAAGTTCAACTTTTCTTTTTCTATTGTTACAGACACCATAATCAAAATTTCATCTAATTCATTTAGATTCTGTGATGATGTTCCAATTCTTATTTGTTGCTATTGAAATATTCATGATATAATCATGACCATTACTCTATATACTATTTAGTTGCTAATATATATACTTTTTCATTGCAGTTCTATTCTTTGCCATATCAACATTCTTTGAGCTTCTATGTGTTCTTCTCTATGCATTTGTTTTTCCTAAAATACCAATTGTGAAATACTACCGTACAAAAGCAGCATCAGAAGGATCCAAAACGGTTTCAGCTGATCTTGCAGCTGGTGGCATCCAAACAATACCTAAAGAAGTACTATTTCTTTCTTCTGTTTTAGTTTCAAACTTTCTCATTGTTTATGACTCACCTTATAATGTGATAATAATTTTCCTTTTTCAGGATGAGGATCATGCACACAAACAAGAGAGGAAGGGAAACAAAGAATTGTTTTTTGAAAACATTGATTATTTACTTGATATGTTCCTAATTTATGCATTGACACTCTCTATTTTCCCTGGATTTCTGTCTGAAGATACTGGAGCACATAGTTTAGGAACATGGTATGTTCATTGCTACCTGCCTTTTAAATCTTTGGTAATTTTGCCATTTTATTTTAATTTCAAATTTTTACGAATCGAAACGACAAGGACCAACTCCTAATGGATTGCTGTAGATAAAGATGTGTATTCTGTAGTTATATGTATCATTGAGAAAGTTGTGCTTATAATTTTTTAGGTATGCTCTTGTGTTAATTGCAATGTACAATGTGTGGGATCTAATAGGAAGATACATCCCACTCTTGAAATTCTTGAAATTGGAGTCAAGAAAGATGATCACAGTAGCAATACTATGTCGCTTCGTACTTGTTCCAGCATTTTATTTCACTGCAAAGTATGGTGATCAAGGTTGGATGATAATGTTGACATCATTCTTGGGGCTATCCAATGGTTACCTCACTGTTTGTGTTATGACATCTGCACCCAAAGGTTATAAGGTAAGACCTTGAGAGTATATTATAGTAGTGTTTAATTTGGAACCGGCTCCCTGGGGATTTCCCGCATTCACGCATTCGAGATATCGATGGCTGTTTGATCAAAATCGGATAGTCTGGACCGTTCGGTTTTGATTGAACGGCCACCAATATCCTTAAAGCATAAATACCAGATCCCTATACTATATGAAATCCAAATTCACATTAATATTTATGTTTTAATTTATTGTAGGGTCCAGAACAAAATGCTTTGGGAAACTTGTTGGTGTTGTTTCTACTTGGAGGTATTTTTGCAGGGGTTACACTAGACTGGTTGTGGTTGATAGGCAAAGGTTGGTGA
Protein sequence

>MS.gene043342.t1

MVNVEPPTRLEGKYAAILVCFLLGNGCLFSWNSMLTIEDYYIYLFPNYHPSRVLTLVYQPFAVGTLAILSYNEAKVNTRFRNLFGYTLFFITTFLVLILDLATSGKGGLGTFIGICAISGAFGVADAHVQGGMIGDLSYMKPEFIQSFLCGLAASGALTSALRLITKAAFDNSKDGLRKGAILFFAISTFFELLCVLLYAFVFPKIPIVKYYRTKAASEGSKTVSADLAAGGIQTIPKEDEDHAHKQERKGNKELFFENIDYLLDMFLIYALTLSIFPGFLSEDTGAHSLGTWYALVLIAMYNVWDLIGRYIPLLKFLKLESRKMITVAILCRFVLVPAFYFTAKYGDQGWMIMLTSFLGLSNGYLTVCVMTSAPKGYKGPEQNALGNLLVLFLLGGIFAGVTLDWLWLIGKGW