Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51411.t1 | KEH17554.1 | 97.8 | 414 | 9 | 0 | 1 | 414 | 1 | 414 | 3.10E-225 | 790.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51411.t1 | Q9M0Y3 | 70.2 | 410 | 121 | 1 | 3 | 412 | 6 | 414 | 3.4e-164 | 579.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51411.t1 | A0A072TIZ8 | 97.8 | 414 | 9 | 0 | 1 | 414 | 1 | 414 | 2.2e-225 | 790.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene51411 | MS.gene31551 | PPI |
| MS.gene51411 | MS.gene45320 | PPI |
| MS.gene51411 | MS.gene046073 | PPI |
| MS.gene45318 | MS.gene51411 | PPI |
| MS.gene51411 | MS.gene45316 | PPI |
| MS.gene51411 | MS.gene064214 | PPI |
| MS.gene51411 | MS.gene51416 | PPI |
| MS.gene51411 | MS.gene51414 | PPI |
| MS.gene35750 | MS.gene51411 | PPI |
| MS.gene51411 | MS.gene029003 | PPI |
| MS.gene064217 | MS.gene51411 | PPI |
| MS.gene51411 | MS.gene043342 | PPI |
| MS.gene51416 | MS.gene51411 | PPI |
| MS.gene51411 | MS.gene45318 | PPI |
| MS.gene046074 | MS.gene51411 | PPI |
| MS.gene51411 | MS.gene046071 | PPI |
| MS.gene51411 | MS.gene064218 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51411.t1 | MTR_0008s0170 | 97.826 | 414 | 9 | 0 | 1 | 414 | 1 | 414 | 0.0 | 813 |
| MS.gene51411.t1 | MTR_0008s0130 | 80.918 | 414 | 79 | 0 | 1 | 414 | 1 | 414 | 0.0 | 694 |
| MS.gene51411.t1 | MTR_4g050990 | 82.850 | 414 | 71 | 0 | 1 | 414 | 1 | 414 | 0.0 | 685 |
| MS.gene51411.t1 | MTR_2g089520 | 82.850 | 414 | 71 | 0 | 1 | 414 | 1 | 414 | 0.0 | 685 |
| MS.gene51411.t1 | MTR_2g047968 | 80.344 | 407 | 80 | 0 | 4 | 410 | 4 | 410 | 0.0 | 639 |
| MS.gene51411.t1 | MTR_2g011600 | 68.873 | 408 | 125 | 1 | 7 | 412 | 14 | 421 | 0.0 | 567 |
| MS.gene51411.t1 | MTR_2g011580 | 69.737 | 380 | 114 | 1 | 34 | 412 | 1 | 380 | 0.0 | 543 |
| MS.gene51411.t1 | MTR_1g071120 | 76.504 | 349 | 73 | 3 | 11 | 358 | 53 | 393 | 0.0 | 533 |
| MS.gene51411.t1 | MTR_2g011600 | 67.120 | 368 | 119 | 1 | 47 | 412 | 3 | 370 | 6.85e-176 | 496 |
| MS.gene51411.t1 | MTR_8g007285 | 57.851 | 363 | 151 | 1 | 52 | 412 | 2 | 364 | 3.80e-136 | 394 |
| MS.gene51411.t1 | MTR_0003s0470 | 32.274 | 409 | 249 | 8 | 11 | 410 | 26 | 415 | 5.34e-58 | 195 |
| MS.gene51411.t1 | MTR_3g462280 | 30.982 | 397 | 245 | 8 | 23 | 410 | 47 | 423 | 2.36e-48 | 170 |
| MS.gene51411.t1 | MTR_4g114710 | 27.423 | 423 | 264 | 8 | 1 | 410 | 6 | 398 | 6.56e-42 | 152 |
| MS.gene51411.t1 | MTR_2g011540 | 51.852 | 135 | 58 | 1 | 52 | 179 | 2 | 136 | 1.37e-36 | 131 |
| MS.gene51411.t1 | MTR_2g011530 | 69.565 | 92 | 27 | 1 | 278 | 368 | 2 | 93 | 3.65e-35 | 125 |
| MS.gene51411.t1 | MTR_2g011560 | 36.842 | 152 | 40 | 3 | 177 | 323 | 17 | 117 | 5.35e-17 | 77.0 |
| MS.gene51411.t1 | MTR_2g011570 | 64.444 | 45 | 16 | 0 | 137 | 181 | 1 | 45 | 2.59e-12 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51411.t1 | AT4G05120 | 70.244 | 410 | 121 | 1 | 3 | 412 | 6 | 414 | 0.0 | 600 |
| MS.gene51411.t1 | AT4G05120 | 70.244 | 410 | 121 | 1 | 3 | 412 | 6 | 414 | 0.0 | 600 |
| MS.gene51411.t1 | AT4G05110 | 65.610 | 410 | 140 | 1 | 3 | 412 | 6 | 414 | 0.0 | 560 |
| MS.gene51411.t1 | AT4G05110 | 65.610 | 410 | 140 | 1 | 3 | 412 | 6 | 414 | 0.0 | 560 |
| MS.gene51411.t1 | AT4G05110 | 65.366 | 410 | 141 | 1 | 3 | 412 | 6 | 414 | 0.0 | 559 |
| MS.gene51411.t1 | AT4G05140 | 63.902 | 410 | 148 | 0 | 3 | 412 | 6 | 415 | 0.0 | 553 |
| MS.gene51411.t1 | AT4G05130 | 62.136 | 412 | 155 | 1 | 3 | 414 | 6 | 416 | 0.0 | 541 |
| MS.gene51411.t1 | AT3G09990 | 63.704 | 405 | 146 | 1 | 11 | 414 | 13 | 417 | 0.0 | 541 |
| MS.gene51411.t1 | AT1G61630 | 60.732 | 410 | 160 | 1 | 4 | 412 | 5 | 414 | 3.39e-180 | 508 |
| MS.gene51411.t1 | AT1G70330 | 32.067 | 421 | 253 | 9 | 2 | 410 | 51 | 450 | 5.84e-56 | 191 |
| MS.gene51411.t1 | AT1G02630 | 28.750 | 400 | 250 | 6 | 16 | 410 | 20 | 389 | 8.04e-46 | 162 |
| MS.gene51411.t1 | AT1G02630 | 29.798 | 198 | 137 | 2 | 16 | 212 | 20 | 216 | 4.70e-24 | 102 |
Find 91 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCACCTTATAGCCTTTC+GGG | 0.166232 | 4.1:-53256346 | None:intergenic |
| ACAAGGAAACGGATTCTATT+TGG | 0.191611 | 4.1:+53254242 | MS.gene51411:CDS |
| CTTGATTGGTTGTGGTTAAT+AGG | 0.208925 | 4.1:+53256532 | MS.gene51411:CDS |
| TACTTCACAATTGGTAATTT+AGG | 0.225152 | 4.1:-53255173 | None:intergenic |
| TTACTATGTTTATTTATTTC+CGG | 0.229116 | 4.1:+53253775 | MS.gene51411:CDS |
| TTCTTCACCTTATAGCCTTT+CGG | 0.245719 | 4.1:-53256347 | None:intergenic |
| GATAATGTTGACATCTTTCT+TGG | 0.252333 | 4.1:+53256280 | MS.gene51411:CDS |
| AGGAAATAAGCAATTGTTAA+TGG | 0.274561 | 4.1:+53255402 | MS.gene51411:CDS |
| ATGCTGACCTGAACAAATTC+TGG | 0.275263 | 4.1:-53254531 | None:intergenic |
| AGCAATATTTGAAAATTCTA+AGG | 0.295643 | 4.1:+53254862 | MS.gene51411:CDS |
| CTCAAATTGTCTTAATTCTT+CGG | 0.301282 | 4.1:-53255374 | None:intergenic |
| ATCTTGGTATTGTTTCTTCT+TGG | 0.303762 | 4.1:+53256487 | MS.gene51411:CDS |
| ATAGTGGTTTGTTGGCTTCT+TGG | 0.322214 | 4.1:+53253707 | MS.gene51411:CDS |
| CTTGGCGGTGCTGCAGCATC+AGG | 0.325226 | 4.1:+53254806 | MS.gene51411:CDS |
| TAATTGCTATGTATAATGTA+TGG | 0.328838 | 4.1:+53256117 | MS.gene51411:CDS |
| GTTTGTTGGCTTCTTGGAAA+TGG | 0.335314 | 4.1:+53253713 | MS.gene51411:CDS |
| TGCATAGTTAGTGGTGCATT+TGG | 0.338224 | 4.1:+53254453 | MS.gene51411:CDS |
| TTCTGCCCCGAAAGGCTATA+AGG | 0.352392 | 4.1:+53256340 | MS.gene51411:CDS |
| ATAATGTTGACATCTTTCTT+GGG | 0.400944 | 4.1:+53256281 | MS.gene51411:CDS |
| TCAGCTGACCTTGCTGCAGC+TGG | 0.400973 | 4.1:+53255236 | MS.gene51411:CDS |
| GGAGGGATTGGAACATTCAT+TGG | 0.406478 | 4.1:+53254426 | MS.gene51411:CDS |
| AAATGCATTGGGAAATATCT+TGG | 0.414446 | 4.1:+53256471 | MS.gene51411:CDS |
| TTTGTTGGCTTCTTGGAAAT+GGG | 0.415388 | 4.1:+53253714 | MS.gene51411:CDS |
| ACTGATCAAAATCTTGAAGT+TGG | 0.417735 | 4.1:+53256163 | MS.gene51411:CDS |
| GTACTTCTCGTAGTGAAGTC+TGG | 0.421441 | 4.1:-53255262 | None:intergenic |
| CATGAATCCAGAATTTGTTC+AGG | 0.422496 | 4.1:+53254524 | MS.gene51411:CDS |
| GTATCTTCTGATAAGAATCC+AGG | 0.425663 | 4.1:-53255484 | None:intergenic |
| TTGCAGGGGTAACACTTGAT+TGG | 0.425898 | 4.1:+53256518 | MS.gene51411:CDS |
| GAACGGTAGTACTTCACAAT+TGG | 0.426412 | 4.1:-53255182 | None:intergenic |
| TTATTGTTGTAGTCTTTCCT+TGG | 0.427988 | 4.1:+53254788 | MS.gene51411:intron |
| GTGCTCTAACATCGGCTTTG+AGG | 0.429741 | 4.1:+53254828 | MS.gene51411:CDS |
| TACAATTAAAACAGCCAAAA+CGG | 0.430063 | 4.1:-53254285 | None:intergenic |
| AAGGTCAGCTGAAACAGTTT+TGG | 0.431717 | 4.1:-53255225 | None:intergenic |
| TTGGTATTGTTTCTTCTTGG+CGG | 0.438078 | 4.1:+53256490 | MS.gene51411:CDS |
| CATGCACAAGGAGGAATGAT+TGG | 0.442301 | 4.1:+53254489 | MS.gene51411:CDS |
| AAGCTCAAACAAGGTTGATA+AGG | 0.443767 | 4.1:-53255120 | None:intergenic |
| TAGTTGGATTTAGCAACATC+TGG | 0.457762 | 4.1:+53254399 | MS.gene51411:intron |
| TATAATGTATGGGATCTTAT+CGG | 0.459552 | 4.1:+53256128 | MS.gene51411:CDS |
| GGGTAACACTTGATTGGTTG+TGG | 0.462903 | 4.1:+53256524 | MS.gene51411:CDS |
| ATGCTGCAATAGTGGTTTGT+TGG | 0.467401 | 4.1:+53253699 | MS.gene51411:CDS |
| ATTGGTATATGCATAGTTAG+TGG | 0.468620 | 4.1:+53254444 | MS.gene51411:CDS |
| TTGTTGTAGTCTTTCCTTGG+CGG | 0.468717 | 4.1:+53254791 | MS.gene51411:intron |
| ACATCTGGTAAAGGAGGGAT+TGG | 0.484610 | 4.1:+53254414 | MS.gene51411:CDS |
| GATACCGGATTACACAGTTT+AGG | 0.487502 | 4.1:+53255502 | MS.gene51411:CDS |
| AATTGCTATGTATAATGTAT+GGG | 0.488467 | 4.1:+53256118 | MS.gene51411:CDS |
| GGGACCTGAACAAAATGCAT+TGG | 0.488651 | 4.1:+53256459 | MS.gene51411:intron |
| GGGAAAATATGCTGCAATAG+TGG | 0.494596 | 4.1:+53253691 | MS.gene51411:intron |
| CTGACATTGTCTATATTCCC+TGG | 0.495635 | 4.1:+53255466 | MS.gene51411:CDS |
| AGCAATTCTTACTTACTATG+AGG | 0.505159 | 4.1:+53254208 | MS.gene51411:CDS |
| GGACCTGAACAAAATGCATT+GGG | 0.505661 | 4.1:+53256460 | MS.gene51411:CDS |
| GCTAGTGTTCCAACTGCAAA+TGG | 0.506628 | 4.1:-53254188 | None:intergenic |
| ATCACCTCAATTCGTGGTGG+AGG | 0.522623 | 4.1:-53253580 | None:intergenic |
| TGCAGAAATATCATCCCTCT+AGG | 0.522851 | 4.1:+53254144 | MS.gene51411:intron |
| GATTTAGCAACATCTGGTAA+AGG | 0.531613 | 4.1:+53254405 | MS.gene51411:CDS |
| TGTGCCTAAACTGTGTAATC+CGG | 0.542014 | 4.1:-53255506 | None:intergenic |
| CAAAGTATGGTACTCAAGGT+TGG | 0.542078 | 4.1:+53256255 | MS.gene51411:CDS |
| CGTTCAAAAGCTGCATCCGA+AGG | 0.544550 | 4.1:+53255200 | MS.gene51411:CDS |
| ACAGACAGCGAGGTAGCCAT+TGG | 0.547272 | 4.1:-53256309 | None:intergenic |
| ATTCTGGATTCATGTATGAC+AGG | 0.549368 | 4.1:-53254515 | None:intergenic |
| TGAGCCTCCACCACGAATTG+AGG | 0.549820 | 4.1:+53253576 | MS.gene51411:CDS |
| GGATTCTTATCAGAAGATAC+CGG | 0.550056 | 4.1:+53255487 | MS.gene51411:CDS |
| CTGATGCTGCAGCACCGCCA+AGG | 0.552472 | 4.1:-53254805 | None:intergenic |
| GTATATCAGCCATTTGCAGT+TGG | 0.555669 | 4.1:+53254179 | MS.gene51411:CDS |
| AAATTGTCTTAATTCTTCGG+TGG | 0.562541 | 4.1:-53255371 | None:intergenic |
| TCTTTCTTGGGGATATCCAA+TGG | 0.562937 | 4.1:+53256293 | MS.gene51411:CDS |
| TTTGCAGTGAAATAAAATGC+TGG | 0.563621 | 4.1:-53256236 | None:intergenic |
| ATATATATCACCTCAATTCG+TGG | 0.564481 | 4.1:-53253586 | None:intergenic |
| TAATGTTGACATCTTTCTTG+GGG | 0.567874 | 4.1:+53256282 | MS.gene51411:CDS |
| ACTGCAAAGTATGGTACTCA+AGG | 0.567878 | 4.1:+53256251 | MS.gene51411:CDS |
| TTAAGACAATTTGAGCGCAA+AGG | 0.573253 | 4.1:+53255382 | MS.gene51411:CDS |
| AGCATCAGGTGCTCTAACAT+CGG | 0.577110 | 4.1:+53254820 | MS.gene51411:CDS |
| TTAGCAACATCTGGTAAAGG+AGG | 0.580672 | 4.1:+53254408 | MS.gene51411:CDS |
| TACAAGAGTAAGCACCCTAG+AGG | 0.583761 | 4.1:-53254159 | None:intergenic |
| TGGTTGTGGTTAATAGGTAA+AGG | 0.585880 | 4.1:+53256538 | MS.gene51411:CDS |
| ATATTTGAAAATTCTAAGGA+CGG | 0.591838 | 4.1:+53254866 | MS.gene51411:CDS |
| GTTCTCACTTCTGCCCCGAA+AGG | 0.606657 | 4.1:+53256332 | MS.gene51411:CDS |
| CTTCACCTTATAGCCTTTCG+GGG | 0.611942 | 4.1:-53256345 | None:intergenic |
| TAGCAACATCTGGTAAAGGA+GGG | 0.612233 | 4.1:+53254409 | MS.gene51411:CDS |
| AACACAAAGAAGCTCAAACA+AGG | 0.615784 | 4.1:-53255129 | None:intergenic |
| TCTAAGGACGGTCTTCGCAA+AGG | 0.617233 | 4.1:+53254878 | MS.gene51411:CDS |
| TGTGGTTAATAGGTAAAGGA+TGG | 0.618128 | 4.1:+53256542 | MS.gene51411:CDS |
| TTAGCAGATGCTCATGCACA+AGG | 0.620251 | 4.1:+53254477 | MS.gene51411:CDS |
| GCAGAAATATCATCCCTCTA+GGG | 0.623345 | 4.1:+53254145 | MS.gene51411:intron |
| TATCTTCTGATAAGAATCCA+GGG | 0.624746 | 4.1:-53255483 | None:intergenic |
| GTTCAAAAGCTGCATCCGAA+GGG | 0.625870 | 4.1:+53255201 | MS.gene51411:CDS |
| ACAAGAGTAAGCACCCTAGA+GGG | 0.631895 | 4.1:-53254158 | None:intergenic |
| GATTACACAGTTTAGGCACA+TGG | 0.648704 | 4.1:+53255509 | MS.gene51411:CDS |
| TCTGGATTCCAGCTGCAGCA+AGG | 0.649624 | 4.1:-53255244 | None:intergenic |
| TATATCACCTCAATTCGTGG+TGG | 0.676520 | 4.1:-53253583 | None:intergenic |
| AAGTGAGAACACAGACAGCG+AGG | 0.688797 | 4.1:-53256319 | None:intergenic |
| GCAGATGCTCATGCACAAGG+AGG | 0.707799 | 4.1:+53254480 | MS.gene51411:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTACTATGTTTATTTATTTC+CGG | + | chr4.1:53253775-53253794 | MS.gene51411:CDS | 15.0% |
| !!! | AAATTGATTTCTTTTAGTAT+CGG | + | chr4.1:53255002-53255021 | MS.gene51411:intron | 15.0% |
| !!! | AATGATATTTTAAGAAGTAA+TGG | + | chr4.1:53255974-53255993 | MS.gene51411:intron | 15.0% |
| !!! | GTATGTTTTTTACTTTTTTA+GGG | + | chr4.1:53256439-53256458 | MS.gene51411:intron | 15.0% |
| !!! | TGTATGTTTTTTACTTTTTT+AGG | + | chr4.1:53256438-53256457 | MS.gene51411:intron | 15.0% |
| !! | AAATTGATATTTGAATGTGT+TGG | - | chr4.1:53255852-53255871 | None:intergenic | 20.0% |
| !! | AAGTTAACAAAACTATTAAC+AGG | - | chr4.1:53254314-53254333 | None:intergenic | 20.0% |
| !! | AATTGATATTTGAATGTGTT+GGG | - | chr4.1:53255851-53255870 | None:intergenic | 20.0% |
| !! | AATTGCTATGTATAATGTAT+GGG | + | chr4.1:53256118-53256137 | MS.gene51411:CDS | 20.0% |
| !! | AGCAATATTTGAAAATTCTA+AGG | + | chr4.1:53254862-53254881 | MS.gene51411:CDS | 20.0% |
| !! | ATTTAAATAACTCTAAACCT+CGG | - | chr4.1:53256396-53256415 | None:intergenic | 20.0% |
| !! | CAAAATAAATGATGTGTAAT+AGG | - | chr4.1:53253899-53253918 | None:intergenic | 20.0% |
| !! | TAATTGCTATGTATAATGTA+TGG | + | chr4.1:53256117-53256136 | MS.gene51411:CDS | 20.0% |
| !! | TTGATATTTCCATTTATTAC+AGG | + | chr4.1:53256081-53256100 | MS.gene51411:intron | 20.0% |
| !!! | ACATCATTTATTTTGTAATC+TGG | + | chr4.1:53253904-53253923 | MS.gene51411:intron | 20.0% |
| !!! | ATATTTGAAAATTCTAAGGA+CGG | + | chr4.1:53254866-53254885 | MS.gene51411:CDS | 20.0% |
| !!! | TAAATTATTTTGCATTTGCA+GGG | + | chr4.1:53253671-53253690 | MS.gene51411:intron | 20.0% |
| !!! | TTAAATTATTTTGCATTTGC+AGG | + | chr4.1:53253670-53253689 | MS.gene51411:intron | 20.0% |
| ! | AAAACTGAATCTCAACAATA+AGG | - | chr4.1:53255321-53255340 | None:intergenic | 25.0% |
| ! | AAATAGTCAGTTATCAACAA+GGG | - | chr4.1:53254021-53254040 | None:intergenic | 25.0% |
| ! | ACAATGCTAACTTTGATATT+CGG | + | chr4.1:53254591-53254610 | MS.gene51411:intron | 25.0% |
| ! | AGGAAATAAGCAATTGTTAA+TGG | + | chr4.1:53255402-53255421 | MS.gene51411:CDS | 25.0% |
| ! | ATAATGTTGACATCTTTCTT+GGG | + | chr4.1:53256281-53256300 | MS.gene51411:CDS | 25.0% |
| ! | ATATCATTCCAATATCTATC+TGG | - | chr4.1:53255962-53255981 | None:intergenic | 25.0% |
| ! | CAAAAATCAATACAAGGAAA+CGG | + | chr4.1:53254231-53254250 | MS.gene51411:CDS | 25.0% |
| ! | CTCAAATTGTCTTAATTCTT+CGG | - | chr4.1:53255377-53255396 | None:intergenic | 25.0% |
| ! | TAACTAGAGTGAATAGTTAA+CGG | - | chr4.1:53253841-53253860 | None:intergenic | 25.0% |
| ! | TACAACAGATATAACAAAAG+TGG | - | chr4.1:53253995-53254014 | None:intergenic | 25.0% |
| ! | TACAATTAAAACAGCCAAAA+CGG | - | chr4.1:53254288-53254307 | None:intergenic | 25.0% |
| ! | TATAATGTATGGGATCTTAT+CGG | + | chr4.1:53256128-53256147 | MS.gene51411:CDS | 25.0% |
| ! | TCGTTAGTTATTACGTATTT+CGG | - | chr4.1:53255735-53255754 | None:intergenic | 25.0% |
| ! | TGTATGTTCAATTTCAAAAC+TGG | + | chr4.1:53256058-53256077 | MS.gene51411:intron | 25.0% |
| ! | TTAACTATTCACTCTAGTTA+GGG | + | chr4.1:53253841-53253860 | MS.gene51411:intron | 25.0% |
| !! | AATCTAAATGCACATTTTGA+AGG | - | chr4.1:53254342-53254361 | None:intergenic | 25.0% |
| !! | ACATATGCAACTCTTTTTAA+AGG | + | chr4.1:53254763-53254782 | MS.gene51411:intron | 25.0% |
| !! | CTTTTCTTTTCAATTTCTCA+CGG | + | chr4.1:53255290-53255309 | MS.gene51411:intron | 25.0% |
| !! | TACTTCACAATTGGTAATTT+AGG | - | chr4.1:53255176-53255195 | None:intergenic | 25.0% |
| !! | TTATATAACGATTGCTATTG+CGG | + | chr4.1:53254680-53254699 | MS.gene51411:intron | 25.0% |
| !!! | GAAGTATTCTAGTTTCTTAA+AGG | - | chr4.1:53256374-53256393 | None:intergenic | 25.0% |
| !!! | GACTAATTTGTGTTTTTTTC+AGG | + | chr4.1:53255348-53255367 | MS.gene51411:intron | 25.0% |
| !!! | TTTTATTTCACTGCAAAGTA+TGG | + | chr4.1:53256242-53256261 | MS.gene51411:CDS | 25.0% |
| AAAAGAGTTGCATATGTTGA+AGG | - | chr4.1:53254760-53254779 | None:intergenic | 30.0% | |
| AAATGCATTGGGAAATATCT+TGG | + | chr4.1:53256471-53256490 | MS.gene51411:CDS | 30.0% | |
| AAATTGTCTTAATTCTTCGG+TGG | - | chr4.1:53255374-53255393 | None:intergenic | 30.0% | |
| AATAGCGAAAGATACATTTG+AGG | + | chr4.1:53255779-53255798 | MS.gene51411:intron | 30.0% | |
| ACTGATCAAAATCTTGAAGT+TGG | + | chr4.1:53256163-53256182 | MS.gene51411:CDS | 30.0% | |
| AGCAATTCTTACTTACTATG+AGG | + | chr4.1:53254208-53254227 | MS.gene51411:CDS | 30.0% | |
| AGTATCCATCACATACATTT+AGG | - | chr4.1:53255615-53255634 | None:intergenic | 30.0% | |
| ATATATATCACCTCAATTCG+TGG | - | chr4.1:53253589-53253608 | None:intergenic | 30.0% | |
| ATATCTCACCAGATAGATAT+TGG | + | chr4.1:53255951-53255970 | MS.gene51411:intron | 30.0% | |
| ATGAGGCAAAAATCAATACA+AGG | + | chr4.1:53254225-53254244 | MS.gene51411:CDS | 30.0% | |
| ATTGGTATATGCATAGTTAG+TGG | + | chr4.1:53254444-53254463 | MS.gene51411:CDS | 30.0% | |
| CAAATAGTCAGTTATCAACA+AGG | - | chr4.1:53254022-53254041 | None:intergenic | 30.0% | |
| CAATGCTAACTTTGATATTC+GGG | + | chr4.1:53254592-53254611 | MS.gene51411:intron | 30.0% | |
| CGAACATGAAAAACATATCT+CGG | + | chr4.1:53255652-53255671 | MS.gene51411:intron | 30.0% | |
| CTAAAAAGAACCAAGAACAA+AGG | - | chr4.1:53255561-53255580 | None:intergenic | 30.0% | |
| GATAATGTTGACATCTTTCT+TGG | + | chr4.1:53256280-53256299 | MS.gene51411:CDS | 30.0% | |
| GTATCCATCACATACATTTA+GGG | - | chr4.1:53255614-53255633 | None:intergenic | 30.0% | |
| GTATCTTTCGCTATTCAATT+TGG | - | chr4.1:53255774-53255793 | None:intergenic | 30.0% | |
| GTTAACTATTCACTCTAGTT+AGG | + | chr4.1:53253840-53253859 | MS.gene51411:intron | 30.0% | |
| TAACTATTCACTCTAGTTAG+GGG | + | chr4.1:53253842-53253861 | MS.gene51411:intron | 30.0% | |
| TAATGTTGACATCTTTCTTG+GGG | + | chr4.1:53256282-53256301 | MS.gene51411:CDS | 30.0% | |
| TATCTTCTGATAAGAATCCA+GGG | - | chr4.1:53255486-53255505 | None:intergenic | 30.0% | |
| TCAGAAAGTAGATACATTAC+CGG | - | chr4.1:53253797-53253816 | None:intergenic | 30.0% | |
| TGGATATCTTTATGAATCGT+AGG | - | chr4.1:53255030-53255049 | None:intergenic | 30.0% | |
| TTATTGTTGTAGTCTTTCCT+TGG | + | chr4.1:53254788-53254807 | MS.gene51411:intron | 30.0% | |
| TTTGCAGTGAAATAAAATGC+TGG | - | chr4.1:53256239-53256258 | None:intergenic | 30.0% | |
| ! | ATCTTGGTATTGTTTCTTCT+TGG | + | chr4.1:53256487-53256506 | MS.gene51411:CDS | 30.0% |
| ! | TATTTCTGCACAAAGAGAAA+AGG | - | chr4.1:53254134-53254153 | None:intergenic | 30.0% |
| !! | AAAACAACAAAAGTGGGTTA+AGG | + | chr4.1:53256023-53256042 | MS.gene51411:intron | 30.0% |
| !! | AACTTCAAGATTTTGATCAG+TGG | - | chr4.1:53256164-53256183 | None:intergenic | 30.0% |
| !! | AATGTATGTGATGGATACTA+TGG | + | chr4.1:53255616-53255635 | MS.gene51411:intron | 30.0% |
| !! | CTTGTTGATAACTGACTATT+TGG | + | chr4.1:53254020-53254039 | MS.gene51411:intron | 30.0% |
| !! | GCATAAAATTGTTTCTGCAT+GGG | - | chr4.1:53254637-53254656 | None:intergenic | 30.0% |
| !! | TGGATACACACTATTTTTCT+TGG | + | chr4.1:53254262-53254281 | MS.gene51411:CDS | 30.0% |
| !!! | TATAAAAGTTTTAGACGCCT+CGG | - | chr4.1:53254665-53254684 | None:intergenic | 30.0% |
| AACACAAAGAAGCTCAAACA+AGG | - | chr4.1:53255132-53255151 | None:intergenic | 35.0% | |
| AACCAAGAACAAAGGATGAA+AGG | - | chr4.1:53255553-53255572 | None:intergenic | 35.0% | |
| AAGAAACTAGAATACTTCCG+AGG | + | chr4.1:53256376-53256395 | MS.gene51411:intron | 35.0% | |
| AAGGAAAAGAACAAAACTGC+AGG | - | chr4.1:53255104-53255123 | None:intergenic | 35.0% | |
| ATAACTGACTATTTGGTTGC+TGG | + | chr4.1:53254027-53254046 | MS.gene51411:intron | 35.0% | |
| ATCCTTTCATCCTTTGTTCT+TGG | + | chr4.1:53255548-53255567 | MS.gene51411:intron | 35.0% | |
| ATTCTGGATTCATGTATGAC+AGG | - | chr4.1:53254518-53254537 | None:intergenic | 35.0% | |
| CAATCCCTAAATGTATGTGA+TGG | + | chr4.1:53255607-53255626 | MS.gene51411:intron | 35.0% | |
| CTATCTGGTGAGATATGATT+AGG | - | chr4.1:53255947-53255966 | None:intergenic | 35.0% | |
| CTGCTCAAAACAACAAAAGT+GGG | + | chr4.1:53256017-53256036 | MS.gene51411:intron | 35.0% | |
| GATGTTGCTAAATCCAACTA+CGG | - | chr4.1:53254399-53254418 | None:intergenic | 35.0% | |
| GATTTAGCAACATCTGGTAA+AGG | + | chr4.1:53254405-53254424 | MS.gene51411:CDS | 35.0% | |
| GGATTCTTATCAGAAGATAC+CGG | + | chr4.1:53255487-53255506 | MS.gene51411:CDS | 35.0% | |
| GTATCTTCTGATAAGAATCC+AGG | - | chr4.1:53255487-53255506 | None:intergenic | 35.0% | |
| TAACTGACTATTTGGTTGCT+GGG | + | chr4.1:53254028-53254047 | MS.gene51411:intron | 35.0% | |
| TAGTTGGATTTAGCAACATC+TGG | + | chr4.1:53254399-53254418 | MS.gene51411:intron | 35.0% | |
| TCTGCTCAAAACAACAAAAG+TGG | + | chr4.1:53256016-53256035 | MS.gene51411:intron | 35.0% | |
| TGGTTGTGGTTAATAGGTAA+AGG | + | chr4.1:53256538-53256557 | MS.gene51411:CDS | 35.0% | |
| TGTGGTTAATAGGTAAAGGA+TGG | + | chr4.1:53256542-53256561 | MS.gene51411:CDS | 35.0% | |
| TTAAGACAATTTGAGCGCAA+AGG | + | chr4.1:53255382-53255401 | MS.gene51411:CDS | 35.0% | |
| TTCTTCACCTTATAGCCTTT+CGG | - | chr4.1:53256350-53256369 | None:intergenic | 35.0% | |
| ! | AAGAGCGTACCTGTAATAAA+TGG | - | chr4.1:53256093-53256112 | None:intergenic | 35.0% |
| ! | ACAAGGAAACGGATTCTATT+TGG | + | chr4.1:53254242-53254261 | MS.gene51411:CDS | 35.0% |
| ! | CATGAATCCAGAATTTGTTC+AGG | + | chr4.1:53254524-53254543 | MS.gene51411:CDS | 35.0% |
| ! | CTTGATTGGTTGTGGTTAAT+AGG | + | chr4.1:53256532-53256551 | MS.gene51411:CDS | 35.0% |
| ! | TTGGTATTGTTTCTTCTTGG+CGG | + | chr4.1:53256490-53256509 | MS.gene51411:CDS | 35.0% |
| ! | TTTCCCAATGCATTTTGTTC+AGG | - | chr4.1:53256466-53256485 | None:intergenic | 35.0% |
| !! | AAGCTCAAACAAGGTTGATA+AGG | - | chr4.1:53255123-53255142 | None:intergenic | 35.0% |
| !! | ACTATTTTTCTTGGCCGTTT+TGG | + | chr4.1:53254271-53254290 | MS.gene51411:CDS | 35.0% |
| !! | GGCATAAAATTGTTTCTGCA+TGG | - | chr4.1:53254638-53254657 | None:intergenic | 35.0% |
| !! | TTTGTTGGCTTCTTGGAAAT+GGG | + | chr4.1:53253714-53253733 | MS.gene51411:CDS | 35.0% |
| ACTGCAAAGTATGGTACTCA+AGG | + | chr4.1:53256251-53256270 | MS.gene51411:CDS | 40.0% | |
| ATGCTGACCTGAACAAATTC+TGG | - | chr4.1:53254534-53254553 | None:intergenic | 40.0% | |
| CAAAGTATGGTACTCAAGGT+TGG | + | chr4.1:53256255-53256274 | MS.gene51411:CDS | 40.0% | |
| CTGACATTGTCTATATTCCC+TGG | + | chr4.1:53255466-53255485 | MS.gene51411:CDS | 40.0% | |
| GAACGGTAGTACTTCACAAT+TGG | - | chr4.1:53255185-53255204 | None:intergenic | 40.0% | |
| GATACCGGATTACACAGTTT+AGG | + | chr4.1:53255502-53255521 | MS.gene51411:CDS | 40.0% | |
| GATTACACAGTTTAGGCACA+TGG | + | chr4.1:53255509-53255528 | MS.gene51411:CDS | 40.0% | |
| GCAGAAATATCATCCCTCTA+GGG | + | chr4.1:53254145-53254164 | MS.gene51411:intron | 40.0% | |
| GGACCTGAACAAAATGCATT+GGG | + | chr4.1:53256460-53256479 | MS.gene51411:CDS | 40.0% | |
| GGGAAAATATGCTGCAATAG+TGG | + | chr4.1:53253691-53253710 | MS.gene51411:intron | 40.0% | |
| GTATATCAGCCATTTGCAGT+TGG | + | chr4.1:53254179-53254198 | MS.gene51411:CDS | 40.0% | |
| TAGCAACATCTGGTAAAGGA+GGG | + | chr4.1:53254409-53254428 | MS.gene51411:CDS | 40.0% | |
| TATATCACCTCAATTCGTGG+TGG | - | chr4.1:53253586-53253605 | None:intergenic | 40.0% | |
| TCTTCACCTTATAGCCTTTC+GGG | - | chr4.1:53256349-53256368 | None:intergenic | 40.0% | |
| TCTTTCTTGGGGATATCCAA+TGG | + | chr4.1:53256293-53256312 | MS.gene51411:CDS | 40.0% | |
| TGCAGAAATATCATCCCTCT+AGG | + | chr4.1:53254144-53254163 | MS.gene51411:intron | 40.0% | |
| TGCATAGTTAGTGGTGCATT+TGG | + | chr4.1:53254453-53254472 | MS.gene51411:CDS | 40.0% | |
| TGTGCCTAAACTGTGTAATC+CGG | - | chr4.1:53255509-53255528 | None:intergenic | 40.0% | |
| TTAGCAACATCTGGTAAAGG+AGG | + | chr4.1:53254408-53254427 | MS.gene51411:CDS | 40.0% | |
| TTGTTGTAGTCTTTCCTTGG+CGG | + | chr4.1:53254791-53254810 | MS.gene51411:intron | 40.0% | |
| ! | AAGGTCAGCTGAAACAGTTT+TGG | - | chr4.1:53255228-53255247 | None:intergenic | 40.0% |
| ! | ACAATTTTATGCCTTTGCCG+AGG | + | chr4.1:53254645-53254664 | MS.gene51411:intron | 40.0% |
| ! | AGAAAGTACACAGAACTGAG+AGG | - | chr4.1:53254066-53254085 | None:intergenic | 40.0% |
| ! | ATGCTGCAATAGTGGTTTGT+TGG | + | chr4.1:53253699-53253718 | MS.gene51411:CDS | 40.0% |
| ! | GAAATGGGTGTCTTTTCTCT+TGG | + | chr4.1:53253729-53253748 | MS.gene51411:CDS | 40.0% |
| !! | ATAGTGGTTTGTTGGCTTCT+TGG | + | chr4.1:53253707-53253726 | MS.gene51411:CDS | 40.0% |
| !! | GTTTGTTGGCTTCTTGGAAA+TGG | + | chr4.1:53253713-53253732 | MS.gene51411:CDS | 40.0% |
| !! | TTCTTGGCGGTATTTTTGCA+GGG | + | chr4.1:53256503-53256522 | MS.gene51411:CDS | 40.0% |
| !!! | TGAAACAGTTTTGGACCCTT+CGG | - | chr4.1:53255219-53255238 | None:intergenic | 40.0% |
| ACAAGAGTAAGCACCCTAGA+GGG | - | chr4.1:53254161-53254180 | None:intergenic | 45.0% | |
| ACATCAGCACAACCTAACGT+CGG | - | chr4.1:53253938-53253957 | None:intergenic | 45.0% | |
| ACATCTGGTAAAGGAGGGAT+TGG | + | chr4.1:53254414-53254433 | MS.gene51411:CDS | 45.0% | |
| ACCTATTTACGTGCCGTAGT+TGG | + | chr4.1:53254383-53254402 | MS.gene51411:intron | 45.0% | |
| AGCATCAGGTGCTCTAACAT+CGG | + | chr4.1:53254820-53254839 | MS.gene51411:CDS | 45.0% | |
| CAAAGCAGTAATCATGCTCG+TGG | - | chr4.1:53255050-53255069 | None:intergenic | 45.0% | |
| CAGCACTCTAATGCTTAGCA+TGG | + | chr4.1:53254913-53254932 | MS.gene51411:intron | 45.0% | |
| CATGCACAAGGAGGAATGAT+TGG | + | chr4.1:53254489-53254508 | MS.gene51411:CDS | 45.0% | |
| CTAGTTAGGGGTAATGTCTC+TGG | + | chr4.1:53253854-53253873 | MS.gene51411:intron | 45.0% | |
| CTTCACCTTATAGCCTTTCG+GGG | - | chr4.1:53256348-53256367 | None:intergenic | 45.0% | |
| GCTAGTGTTCCAACTGCAAA+TGG | - | chr4.1:53254191-53254210 | None:intergenic | 45.0% | |
| GGAGGGATTGGAACATTCAT+TGG | + | chr4.1:53254426-53254445 | MS.gene51411:CDS | 45.0% | |
| GGGACCTGAACAAAATGCAT+TGG | + | chr4.1:53256459-53256478 | MS.gene51411:intron | 45.0% | |
| GTACTTCTCGTAGTGAAGTC+TGG | - | chr4.1:53255265-53255284 | None:intergenic | 45.0% | |
| GTTCAAAAGCTGCATCCGAA+GGG | + | chr4.1:53255201-53255220 | MS.gene51411:CDS | 45.0% | |
| GTTCAGGTCAGCATCATCAA+TGG | + | chr4.1:53254540-53254559 | MS.gene51411:intron | 45.0% | |
| TACAAGAGTAAGCACCCTAG+AGG | - | chr4.1:53254162-53254181 | None:intergenic | 45.0% | |
| TCCAACTACGGCACGTAAAT+AGG | - | chr4.1:53254387-53254406 | None:intergenic | 45.0% | |
| TTAGCAGATGCTCATGCACA+AGG | + | chr4.1:53254477-53254496 | MS.gene51411:CDS | 45.0% | |
| TTGCAGGGGTAACACTTGAT+TGG | + | chr4.1:53256518-53256537 | MS.gene51411:CDS | 45.0% | |
| ! | CTTCGGATGCAGCTTTTGAA+CGG | - | chr4.1:53255202-53255221 | None:intergenic | 45.0% |
| ! | GGGTAACACTTGATTGGTTG+TGG | + | chr4.1:53256524-53256543 | MS.gene51411:CDS | 45.0% |
| !! | CTTCTTGGCGGTATTTTTGC+AGG | + | chr4.1:53256502-53256521 | MS.gene51411:CDS | 45.0% |
| !! | TCTTGGCGGTATTTTTGCAG+GGG | + | chr4.1:53256504-53256523 | MS.gene51411:CDS | 45.0% |
| AAGTGAGAACACAGACAGCG+AGG | - | chr4.1:53256322-53256341 | None:intergenic | 50.0% | |
| ATCACCTCAATTCGTGGTGG+AGG | - | chr4.1:53253583-53253602 | None:intergenic | 50.0% | |
| CATCAGCACAACCTAACGTC+GGG | - | chr4.1:53253937-53253956 | None:intergenic | 50.0% | |
| CGTTCAAAAGCTGCATCCGA+AGG | + | chr4.1:53255200-53255219 | MS.gene51411:CDS | 50.0% | |
| GACTATTTGGTTGCTGGGTC+AGG | + | chr4.1:53254033-53254052 | MS.gene51411:intron | 50.0% | |
| TCTAAGGACGGTCTTCGCAA+AGG | + | chr4.1:53254878-53254897 | MS.gene51411:CDS | 50.0% | |
| TTCTGCCCCGAAAGGCTATA+AGG | + | chr4.1:53256340-53256359 | MS.gene51411:CDS | 50.0% | |
| !! | GTGCTCTAACATCGGCTTTG+AGG | + | chr4.1:53254828-53254847 | MS.gene51411:CDS | 50.0% |
| !!! | AGTTTTAGACGCCTCGGCAA+AGG | - | chr4.1:53254659-53254678 | None:intergenic | 50.0% |
| !!! | CTGGTTTTATGCCCGACGTT+AGG | + | chr4.1:53253923-53253942 | MS.gene51411:intron | 50.0% |
| ACAGACAGCGAGGTAGCCAT+TGG | - | chr4.1:53256312-53256331 | None:intergenic | 55.0% | |
| GCAGATGCTCATGCACAAGG+AGG | + | chr4.1:53254480-53254499 | MS.gene51411:CDS | 55.0% | |
| GTTCTCACTTCTGCCCCGAA+AGG | + | chr4.1:53256332-53256351 | MS.gene51411:CDS | 55.0% | |
| TCTGGATTCCAGCTGCAGCA+AGG | - | chr4.1:53255247-53255266 | None:intergenic | 55.0% | |
| TGAGCCTCCACCACGAATTG+AGG | + | chr4.1:53253576-53253595 | MS.gene51411:CDS | 55.0% | |
| TCAGCTGACCTTGCTGCAGC+TGG | + | chr4.1:53255236-53255255 | MS.gene51411:CDS | 60.0% | |
| CTGATGCTGCAGCACCGCCA+AGG | - | chr4.1:53254808-53254827 | None:intergenic | 65.0% | |
| !! | CTTGGCGGTGCTGCAGCATC+AGG | + | chr4.1:53254806-53254825 | MS.gene51411:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 53253565 | 53256567 | 53253565 | ID=MS.gene51411 |
| chr4.1 | mRNA | 53253565 | 53256567 | 53253565 | ID=MS.gene51411.t1;Parent=MS.gene51411 |
| chr4.1 | exon | 53253565 | 53253597 | 53253565 | ID=MS.gene51411.t1.exon1;Parent=MS.gene51411.t1 |
| chr4.1 | CDS | 53253565 | 53253597 | 53253565 | ID=cds.MS.gene51411.t1;Parent=MS.gene51411.t1 |
| chr4.1 | exon | 53253692 | 53253796 | 53253692 | ID=MS.gene51411.t1.exon2;Parent=MS.gene51411.t1 |
| chr4.1 | CDS | 53253692 | 53253796 | 53253692 | ID=cds.MS.gene51411.t1;Parent=MS.gene51411.t1 |
| chr4.1 | exon | 53254149 | 53254304 | 53254149 | ID=MS.gene51411.t1.exon3;Parent=MS.gene51411.t1 |
| chr4.1 | CDS | 53254149 | 53254304 | 53254149 | ID=cds.MS.gene51411.t1;Parent=MS.gene51411.t1 |
| chr4.1 | exon | 53254402 | 53254545 | 53254402 | ID=MS.gene51411.t1.exon4;Parent=MS.gene51411.t1 |
| chr4.1 | CDS | 53254402 | 53254545 | 53254402 | ID=cds.MS.gene51411.t1;Parent=MS.gene51411.t1 |
| chr4.1 | exon | 53254800 | 53254905 | 53254800 | ID=MS.gene51411.t1.exon5;Parent=MS.gene51411.t1 |
| chr4.1 | CDS | 53254800 | 53254905 | 53254800 | ID=cds.MS.gene51411.t1;Parent=MS.gene51411.t1 |
| chr4.1 | exon | 53255108 | 53255280 | 53255108 | ID=MS.gene51411.t1.exon6;Parent=MS.gene51411.t1 |
| chr4.1 | CDS | 53255108 | 53255280 | 53255108 | ID=cds.MS.gene51411.t1;Parent=MS.gene51411.t1 |
| chr4.1 | exon | 53255370 | 53255530 | 53255370 | ID=MS.gene51411.t1.exon7;Parent=MS.gene51411.t1 |
| chr4.1 | CDS | 53255370 | 53255530 | 53255370 | ID=cds.MS.gene51411.t1;Parent=MS.gene51411.t1 |
| chr4.1 | exon | 53256103 | 53256361 | 53256103 | ID=MS.gene51411.t1.exon8;Parent=MS.gene51411.t1 |
| chr4.1 | CDS | 53256103 | 53256361 | 53256103 | ID=cds.MS.gene51411.t1;Parent=MS.gene51411.t1 |
| chr4.1 | exon | 53256460 | 53256567 | 53256460 | ID=MS.gene51411.t1.exon9;Parent=MS.gene51411.t1 |
| chr4.1 | CDS | 53256460 | 53256567 | 53256460 | ID=cds.MS.gene51411.t1;Parent=MS.gene51411.t1 |
| Gene Sequence |
| Protein sequence |
