Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45318.t1 | KEH17552.1 | 96.1 | 414 | 16 | 0 | 1 | 414 | 1 | 414 | 8.90E-225 | 789.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45318.t1 | Q9M0Y3 | 67.3 | 410 | 133 | 1 | 3 | 412 | 6 | 414 | 1.0e-160 | 567.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45318.t1 | A0A072TJE0 | 96.1 | 414 | 16 | 0 | 1 | 414 | 1 | 414 | 6.4e-225 | 789.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene45318 | MS.gene51411 | PPI |
| MS.gene45318 | MS.gene45316 | PPI |
| MS.gene35750 | MS.gene45318 | PPI |
| MS.gene51416 | MS.gene45318 | PPI |
| MS.gene45318 | MS.gene51416 | PPI |
| MS.gene046074 | MS.gene45318 | PPI |
| MS.gene45318 | MS.gene51414 | PPI |
| MS.gene45318 | MS.gene043342 | PPI |
| MS.gene064217 | MS.gene45318 | PPI |
| MS.gene45318 | MS.gene064214 | PPI |
| MS.gene45318 | MS.gene046071 | PPI |
| MS.gene51411 | MS.gene45318 | PPI |
| MS.gene45318 | MS.gene064218 | PPI |
| MS.gene45318 | MS.gene31551 | PPI |
| MS.gene45318 | MS.gene45320 | PPI |
| MS.gene45318 | MS.gene046073 | PPI |
| MS.gene45318 | MS.gene029003 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45318.t1 | MTR_0008s0130 | 96.135 | 414 | 16 | 0 | 1 | 414 | 1 | 414 | 0.0 | 809 |
| MS.gene45318.t1 | MTR_0008s0170 | 81.884 | 414 | 75 | 0 | 1 | 414 | 1 | 414 | 0.0 | 705 |
| MS.gene45318.t1 | MTR_4g050990 | 76.087 | 414 | 99 | 0 | 1 | 414 | 1 | 414 | 0.0 | 638 |
| MS.gene45318.t1 | MTR_2g089520 | 76.087 | 414 | 99 | 0 | 1 | 414 | 1 | 414 | 0.0 | 638 |
| MS.gene45318.t1 | MTR_1g071120 | 91.117 | 349 | 22 | 3 | 11 | 358 | 53 | 393 | 0.0 | 628 |
| MS.gene45318.t1 | MTR_2g047968 | 75.610 | 410 | 100 | 0 | 1 | 410 | 1 | 410 | 0.0 | 614 |
| MS.gene45318.t1 | MTR_2g011600 | 64.216 | 408 | 144 | 1 | 7 | 412 | 14 | 421 | 0.0 | 538 |
| MS.gene45318.t1 | MTR_2g011580 | 66.579 | 380 | 126 | 1 | 34 | 412 | 1 | 380 | 0.0 | 526 |
| MS.gene45318.t1 | MTR_2g011600 | 63.361 | 363 | 131 | 1 | 52 | 412 | 8 | 370 | 3.37e-167 | 474 |
| MS.gene45318.t1 | MTR_8g007285 | 55.372 | 363 | 160 | 1 | 52 | 412 | 2 | 364 | 3.14e-131 | 382 |
| MS.gene45318.t1 | MTR_0003s0470 | 33.172 | 413 | 240 | 11 | 11 | 410 | 26 | 415 | 4.65e-57 | 193 |
| MS.gene45318.t1 | MTR_3g462280 | 31.750 | 400 | 238 | 9 | 23 | 410 | 47 | 423 | 1.07e-48 | 171 |
| MS.gene45318.t1 | MTR_4g114710 | 27.660 | 423 | 263 | 8 | 1 | 410 | 6 | 398 | 1.00e-41 | 152 |
| MS.gene45318.t1 | MTR_2g011540 | 49.630 | 135 | 61 | 1 | 52 | 179 | 2 | 136 | 1.39e-35 | 128 |
| MS.gene45318.t1 | MTR_2g011530 | 60.870 | 92 | 35 | 1 | 278 | 368 | 2 | 93 | 1.27e-32 | 119 |
| MS.gene45318.t1 | MTR_2g011560 | 58.730 | 63 | 26 | 0 | 177 | 239 | 17 | 79 | 2.26e-16 | 75.5 |
| MS.gene45318.t1 | MTR_2g011570 | 66.667 | 45 | 15 | 0 | 137 | 181 | 1 | 45 | 2.17e-12 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45318.t1 | AT4G05120 | 67.317 | 410 | 133 | 1 | 3 | 412 | 6 | 414 | 0.0 | 583 |
| MS.gene45318.t1 | AT4G05120 | 67.317 | 410 | 133 | 1 | 3 | 412 | 6 | 414 | 0.0 | 583 |
| MS.gene45318.t1 | AT4G05110 | 63.659 | 410 | 148 | 1 | 3 | 412 | 6 | 414 | 0.0 | 553 |
| MS.gene45318.t1 | AT4G05110 | 63.659 | 410 | 148 | 1 | 3 | 412 | 6 | 414 | 0.0 | 553 |
| MS.gene45318.t1 | AT4G05110 | 63.415 | 410 | 149 | 1 | 3 | 412 | 6 | 414 | 0.0 | 552 |
| MS.gene45318.t1 | AT4G05140 | 62.927 | 410 | 152 | 0 | 3 | 412 | 6 | 415 | 0.0 | 538 |
| MS.gene45318.t1 | AT4G05130 | 59.951 | 412 | 164 | 1 | 3 | 414 | 6 | 416 | 0.0 | 528 |
| MS.gene45318.t1 | AT3G09990 | 60.988 | 405 | 157 | 1 | 11 | 414 | 13 | 417 | 0.0 | 514 |
| MS.gene45318.t1 | AT1G61630 | 58.537 | 410 | 169 | 1 | 4 | 412 | 5 | 414 | 4.11e-175 | 495 |
| MS.gene45318.t1 | AT1G70330 | 29.557 | 406 | 256 | 6 | 16 | 410 | 64 | 450 | 2.49e-54 | 187 |
| MS.gene45318.t1 | AT1G02630 | 26.933 | 401 | 256 | 7 | 16 | 410 | 20 | 389 | 1.01e-40 | 149 |
| MS.gene45318.t1 | AT1G02630 | 27.778 | 198 | 141 | 2 | 16 | 212 | 20 | 216 | 6.12e-21 | 93.6 |
Find 95 sgRNAs with CRISPR-Local
Find 183 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAATGTTAACATCTTTCTT+AGG | 0.175640 | 4.3:+53549176 | MS.gene45318:CDS |
| TTACTATCTTATTCTGTTTC+CGG | 0.185228 | 4.3:+53546539 | MS.gene45318:CDS |
| TACTTCACAATTGGTAATTT+AGG | 0.225152 | 4.3:-53548097 | None:intergenic |
| GTATACCAACCATTTGCTTT+TGG | 0.251495 | 4.3:+53547279 | MS.gene45318:CDS |
| GCTGATTGGTTATGGTTAAT+AGG | 0.266056 | 4.3:+53549425 | MS.gene45318:CDS |
| AGCAATATTTGAAAATTCTA+AGG | 0.295643 | 4.3:+53547785 | MS.gene45318:CDS |
| CTCAAATTGCTTTGATTCTC+CGG | 0.314278 | 4.3:-53548297 | None:intergenic |
| ACAAGGAACCGGAATCTATC+TGG | 0.329557 | 4.3:+53547342 | MS.gene45318:CDS |
| AAGGAAATAAACAATTGTTA+TGG | 0.338580 | 4.3:+53548324 | MS.gene45318:CDS |
| TTCTTCACCTTATAGCCTTT+AGG | 0.351038 | 4.3:-53549242 | None:intergenic |
| TTGCTGCAATGTTGGTTTGC+TGG | 0.356438 | 4.3:+53546463 | MS.gene45318:CDS |
| TTCTGCACCTAAAGGCTATA+AGG | 0.356805 | 4.3:+53549235 | MS.gene45318:CDS |
| GTGTAACAGCTGATTGGTTA+TGG | 0.360918 | 4.3:+53549417 | MS.gene45318:CDS |
| ATGCTGACCTGCATGAAATC+TGG | 0.362551 | 4.3:-53547622 | None:intergenic |
| TGAGCCTCCACCACGTCTTC+AGG | 0.370397 | 4.3:+53546335 | MS.gene45318:CDS |
| AAGTTCAAAGAGTATTGATA+TGG | 0.385350 | 4.3:-53548044 | None:intergenic |
| ATGTTGGTTTGCTGGATTCT+TGG | 0.385441 | 4.3:+53546471 | MS.gene45318:CDS |
| GGAGGGCTTGGAACTTTCAT+TGG | 0.385609 | 4.3:+53547517 | MS.gene45318:CDS |
| AGGAAATAAACAATTGTTAT+GGG | 0.387491 | 4.3:+53548325 | MS.gene45318:CDS |
| TTTGCTGGATTCTTGGCAAC+GGG | 0.401023 | 4.3:+53546478 | MS.gene45318:CDS |
| GAACGATAGTACTTCACAAT+TGG | 0.401062 | 4.3:-53548106 | None:intergenic |
| ATCTTGGTGTTGTTCATCCT+TGG | 0.401749 | 4.3:+53549380 | MS.gene45318:CDS |
| CTTGCAGGTGAAGCAGCCTC+AGG | 0.408659 | 4.3:+53547729 | MS.gene45318:CDS |
| ATGCTGGTATAAGTACAAAT+CGG | 0.414479 | 4.3:-53549115 | None:intergenic |
| TCTGTCTGGACTCCATGTTT+AGG | 0.416636 | 4.3:-53549070 | None:intergenic |
| TAGTTGGATTTAGCATCATC+TGG | 0.418817 | 4.3:+53547490 | MS.gene45318:intron |
| TAATGTTAACATCTTTCTTA+GGG | 0.425817 | 4.3:+53549177 | MS.gene45318:CDS |
| AAATGCCTTGGGAAATATCT+TGG | 0.429155 | 4.3:+53549364 | MS.gene45318:CDS |
| TTGGTGTTGTTCATCCTTGG+AGG | 0.430268 | 4.3:+53549383 | MS.gene45318:CDS |
| TCATCTGGAAAAGGAGGGCT+TGG | 0.431588 | 4.3:+53547505 | MS.gene45318:CDS |
| GCCATTGTTCCAAAAGCAAA+TGG | 0.439292 | 4.3:-53547288 | None:intergenic |
| GGGAAAATTTGCTGCAATGT+TGG | 0.439962 | 4.3:+53546455 | MS.gene45318:intron |
| CTTGCACAAGGAGGAATGAT+TGG | 0.442301 | 4.3:+53547580 | MS.gene45318:CDS |
| ATACTTCTCCAAGTGAGGTC+TGG | 0.445286 | 4.3:-53548186 | None:intergenic |
| TTGCAGGTGTAACAGCTGAT+TGG | 0.468133 | 4.3:+53549411 | MS.gene45318:CDS |
| TGCTGGTATAAGTACAAATC+GGG | 0.473081 | 4.3:-53549114 | None:intergenic |
| GTGTATATCCAGATAGATTC+CGG | 0.476983 | 4.3:-53547350 | None:intergenic |
| GTTTGCTGGATTCTTGGCAA+CGG | 0.481193 | 4.3:+53546477 | MS.gene45318:CDS |
| TGGTTATGGTTAATAGGTAA+AGG | 0.488739 | 4.3:+53549431 | MS.gene45318:CDS |
| GATTTAGCATCATCTGGAAA+AGG | 0.491285 | 4.3:+53547496 | MS.gene45318:CDS |
| TATATATCAGAAACAAATCA+AGG | 0.495914 | 4.3:-53548364 | None:intergenic |
| TGCAGAATTATCATCCCTCT+AGG | 0.499664 | 4.3:+53547244 | MS.gene45318:intron |
| CAAAACTCAATACAAGGAAC+CGG | 0.500124 | 4.3:+53547331 | MS.gene45318:CDS |
| GATACCGGAAAACACAGTTT+AGG | 0.503492 | 4.3:+53548425 | MS.gene45318:CDS |
| GGGACCTGAACAAAATGCCT+TGG | 0.504290 | 4.3:+53549352 | MS.gene45318:intron |
| GGAAGCGGTGATCATCTGTC+TGG | 0.518186 | 4.3:-53549084 | None:intergenic |
| GGACCTGAACAAAATGCCTT+GGG | 0.523863 | 4.3:+53549353 | MS.gene45318:CDS |
| CAATCATTCCTCCTTGTGCA+AGG | 0.525533 | 4.3:-53547579 | None:intergenic |
| TATAATGCATGGGATCTTGT+CGG | 0.534381 | 4.3:+53549023 | MS.gene45318:CDS |
| GTTCTCACTTCTGCACCTAA+AGG | 0.535854 | 4.3:+53549227 | MS.gene45318:CDS |
| CAGGGTATATAGCTAATGTC+AGG | 0.540396 | 4.3:-53548388 | None:intergenic |
| CAAAGTATGGTACTCAAGGT+TGG | 0.542078 | 4.3:+53549150 | MS.gene45318:CDS |
| GTTGGTATCCAGACCTCACT+TGG | 0.548566 | 4.3:+53548178 | MS.gene45318:CDS |
| CGTTCAAAAGCGGCATCAGA+AGG | 0.554037 | 4.3:+53548124 | MS.gene45318:CDS |
| TATGGTTAATAGGTAAAGGA+TGG | 0.554780 | 4.3:+53549435 | MS.gene45318:CDS |
| TTTGCAGTGAAATAAAATGC+TGG | 0.556803 | 4.3:-53549131 | None:intergenic |
| ATTGGTATATGCATAGTTAG+CGG | 0.556867 | 4.3:+53547535 | MS.gene45318:CDS |
| AAGTACAAATCGGGCACAGA+CGG | 0.559597 | 4.3:-53549105 | None:intergenic |
| ATATTTGAAAATTCTAAGGA+TGG | 0.560030 | 4.3:+53547789 | MS.gene45318:CDS |
| GCAGCTGATCTTGCTGCAGT+TGG | 0.562004 | 4.3:+53548160 | MS.gene45318:CDS |
| TTAGCATCATCTGGAAAAGG+AGG | 0.566396 | 4.3:+53547499 | MS.gene45318:CDS |
| ACTGCAAAGTATGGTACTCA+AGG | 0.567878 | 4.3:+53549146 | MS.gene45318:CDS |
| TACAAGAGTAAGCACCCTAG+AGG | 0.583761 | 4.3:-53547259 | None:intergenic |
| ATTGATTAAAATCCTAAACA+TGG | 0.585029 | 4.3:+53549058 | MS.gene45318:CDS |
| ATTACCTGAAGACGTGGTGG+AGG | 0.587707 | 4.3:-53546339 | None:intergenic |
| TTGTTCCAAAAGCAAATGGT+TGG | 0.591187 | 4.3:-53547284 | None:intergenic |
| ACGAGGCAAAACTCAATACA+AGG | 0.597475 | 4.3:+53547325 | MS.gene45318:CDS |
| TCAAAGCAATTTGAGCGCAA+AGG | 0.603782 | 4.3:+53548305 | MS.gene45318:CDS |
| AATCATTCCTCCTTGTGCAA+GGG | 0.604579 | 4.3:-53547578 | None:intergenic |
| AAATCGGGCACAGACGGAAG+CGG | 0.605831 | 4.3:-53549099 | None:intergenic |
| ACAGACAGTGAGGTAGCCAT+TGG | 0.606633 | 4.3:-53549204 | None:intergenic |
| TCTTTCTTAGGGTTAACCAA+TGG | 0.611647 | 4.3:+53549188 | MS.gene45318:CDS |
| ATAGCAGATGCCCTTGCACA+AGG | 0.613845 | 4.3:+53547568 | MS.gene45318:CDS |
| AATTGCTATGTATAATGCAT+GGG | 0.613961 | 4.3:+53549013 | MS.gene45318:CDS |
| TAATTGCTATGTATAATGCA+TGG | 0.615728 | 4.3:+53549012 | MS.gene45318:CDS |
| GCAGAATTATCATCCCTCTA+GGG | 0.615909 | 4.3:+53547245 | MS.gene45318:intron |
| TCTAAGGATGGTCTTCGCAA+AGG | 0.620135 | 4.3:+53547801 | MS.gene45318:CDS |
| AAACAATACTTCTCCAAGTG+AGG | 0.625275 | 4.3:-53548191 | None:intergenic |
| AATGCATCCAGATTTCATGC+AGG | 0.629380 | 4.3:+53547615 | MS.gene45318:CDS |
| AACAGATGTTAGTGCACCTG+AGG | 0.631960 | 4.3:-53547745 | None:intergenic |
| TTATATATTACCTGAAGACG+TGG | 0.633165 | 4.3:-53546345 | None:intergenic |
| GAAAACACAGTTTAGGCACC+TGG | 0.634136 | 4.3:+53548432 | MS.gene45318:CDS |
| CTGACATTAGCTATATACCC+TGG | 0.634648 | 4.3:+53548389 | MS.gene45318:CDS |
| TAGCATCATCTGGAAAAGGA+GGG | 0.637573 | 4.3:+53547500 | MS.gene45318:CDS |
| AACATGATTTACAATTAACA+CGG | 0.638715 | 4.3:-53547394 | None:intergenic |
| ACAAGAGTAAGCACCCTAGA+GGG | 0.641862 | 4.3:-53547258 | None:intergenic |
| ATATATCAGAAACAAATCAA+GGG | 0.646059 | 4.3:-53548363 | None:intergenic |
| TTGCTGGATTCTTGGCAACG+GGG | 0.647875 | 4.3:+53546479 | MS.gene45318:CDS |
| TGGAGGCTCACTGTCAACCA+TGG | 0.655368 | 4.3:-53546322 | None:intergenic |
| TATATTACCTGAAGACGTGG+TGG | 0.664863 | 4.3:-53546342 | None:intergenic |
| AAGTGAGAACACAGACAGTG+AGG | 0.670493 | 4.3:-53549214 | None:intergenic |
| CAACACCAAGATATTTCCCA+AGG | 0.677439 | 4.3:-53549369 | None:intergenic |
| GAAGTACTATCGTTCAAAAG+CGG | 0.681297 | 4.3:+53548114 | MS.gene45318:CDS |
| GCAGATGCCCTTGCACAAGG+AGG | 0.698443 | 4.3:+53547571 | MS.gene45318:CDS |
| GGCAATACTTGCTTACCACG+AGG | 0.744049 | 4.3:+53547308 | MS.gene45318:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATTACAAATTATTAGTA+TGG | - | chr4.3:53547999-53548018 | None:intergenic | 10.0% |
| !! | TAATTACAAATTATTAGTAT+GGG | - | chr4.3:53547998-53548017 | None:intergenic | 10.0% |
| !!! | AAAAAAAATTAGTTTCTTAA+AGG | - | chr4.3:53549269-53549288 | None:intergenic | 10.0% |
| !!! | GTTTTAAAATTAAAAGTTTA+TGG | - | chr4.3:53548748-53548767 | None:intergenic | 10.0% |
| !!! | TTTCATCATTTAATTTTTTT+TGG | + | chr4.3:53546424-53546443 | MS.gene45318:intron | 10.0% |
| !! | CAATATATGCAAAAATTTAA+TGG | + | chr4.3:53547683-53547702 | MS.gene45318:intron | 15.0% |
| !! | GTTATAAACTTCAATTAAAT+AGG | + | chr4.3:53548496-53548515 | MS.gene45318:intron | 15.0% |
| !! | TTAAAATTGGATATTAAAAC+TGG | - | chr4.3:53546903-53546922 | None:intergenic | 15.0% |
| !! | TTAATTGAAGTTTATAACTA+AGG | - | chr4.3:53548494-53548513 | None:intergenic | 15.0% |
| !! | TTATTCCTTATAGTTAAAAT+TGG | - | chr4.3:53546916-53546935 | None:intergenic | 15.0% |
| !!! | AAGAAACTAATTTTTTTTAG+AGG | + | chr4.3:53549271-53549290 | MS.gene45318:intron | 15.0% |
| !!! | AATATCCAATTTTAACTATA+AGG | + | chr4.3:53546908-53546927 | MS.gene45318:intron | 15.0% |
| !!! | TAAATTTTTGCATATATTGA+AGG | - | chr4.3:53547682-53547701 | None:intergenic | 15.0% |
| !!! | TTTATTTTGTTTTGAAATCT+CGG | + | chr4.3:53546628-53546647 | MS.gene45318:intron | 15.0% |
| !! | AAAGTTTATGGAGTATAAAT+AGG | - | chr4.3:53548736-53548755 | None:intergenic | 20.0% |
| !! | AACATGATTTACAATTAACA+CGG | - | chr4.3:53547397-53547416 | None:intergenic | 20.0% |
| !! | AAGGAAATAAACAATTGTTA+TGG | + | chr4.3:53548324-53548343 | MS.gene45318:CDS | 20.0% |
| !! | ACTAATGAAAGATACATTTA+AGG | + | chr4.3:53548663-53548682 | MS.gene45318:intron | 20.0% |
| !! | AGCAATATTTGAAAATTCTA+AGG | + | chr4.3:53547785-53547804 | MS.gene45318:CDS | 20.0% |
| !! | AGGAAATAAACAATTGTTAT+GGG | + | chr4.3:53548325-53548344 | MS.gene45318:CDS | 20.0% |
| !! | ATAATGTTAACATCTTTCTT+AGG | + | chr4.3:53549176-53549195 | MS.gene45318:CDS | 20.0% |
| !! | ATATATCAGAAACAAATCAA+GGG | - | chr4.3:53548366-53548385 | None:intergenic | 20.0% |
| !! | ATTGATTAAAATCCTAAACA+TGG | + | chr4.3:53549058-53549077 | MS.gene45318:CDS | 20.0% |
| !! | CAAAGAATAATTGAAGTTTA+CGG | - | chr4.3:53548467-53548486 | None:intergenic | 20.0% |
| !! | TAATGTTAACATCTTTCTTA+GGG | + | chr4.3:53549177-53549196 | MS.gene45318:CDS | 20.0% |
| !! | TATATATCAGAAACAAATCA+AGG | - | chr4.3:53548367-53548386 | None:intergenic | 20.0% |
| !! | TATTTGTAGTCTGTTTAATT+TGG | + | chr4.3:53547883-53547902 | MS.gene45318:intron | 20.0% |
| !! | TCAGAAAATAGATAAATTAC+CGG | - | chr4.3:53546561-53546580 | None:intergenic | 20.0% |
| !!! | ATATTTGAAAATTCTAAGGA+TGG | + | chr4.3:53547789-53547808 | MS.gene45318:CDS | 20.0% |
| !!! | ATGTTTAGGATTTTAATCAA+TGG | - | chr4.3:53549059-53549078 | None:intergenic | 20.0% |
| !!! | CATTTAATTTTTTTTGGCAT+TGG | + | chr4.3:53546430-53546449 | MS.gene45318:intron | 20.0% |
| !!! | TGTATGTTTTTACTTATGTA+GGG | + | chr4.3:53549332-53549351 | MS.gene45318:intron | 20.0% |
| !!! | TGTTTAGTGTTTTAAAACTA+TGG | - | chr4.3:53548895-53548914 | None:intergenic | 20.0% |
| !!! | TTGTATGTTTTTACTTATGT+AGG | + | chr4.3:53549331-53549350 | MS.gene45318:intron | 20.0% |
| ! | AACATAAATGCATATTCTAG+AGG | - | chr4.3:53547442-53547461 | None:intergenic | 25.0% |
| ! | AACATACAAGCATTAATCAA+TGG | - | chr4.3:53549320-53549339 | None:intergenic | 25.0% |
| ! | AATTGCTATGTATAATGCAT+GGG | + | chr4.3:53549013-53549032 | MS.gene45318:CDS | 25.0% |
| ! | ACATCTATTGTTCTATCTTT+CGG | + | chr4.3:53548584-53548603 | MS.gene45318:intron | 25.0% |
| ! | AGATTAACAAGCTATTCAAT+TGG | - | chr4.3:53548961-53548980 | None:intergenic | 25.0% |
| ! | GATTAACAAGCTATTCAATT+GGG | - | chr4.3:53548960-53548979 | None:intergenic | 25.0% |
| ! | TAAACTGAATCTCAAAAGTT+AGG | - | chr4.3:53548245-53548264 | None:intergenic | 25.0% |
| ! | TAATTGCTATGTATAATGCA+TGG | + | chr4.3:53549012-53549031 | MS.gene45318:CDS | 25.0% |
| ! | TATCTTCTGATAAAAATCCA+GGG | - | chr4.3:53548409-53548428 | None:intergenic | 25.0% |
| ! | TTAAAACTATGGAGTGAATT+TGG | - | chr4.3:53548884-53548903 | None:intergenic | 25.0% |
| ! | TTACTATCTTATTCTGTTTC+CGG | + | chr4.3:53546539-53546558 | MS.gene45318:CDS | 25.0% |
| ! | TTGAAGAAAAAGAGATATGA+GGG | - | chr4.3:53547096-53547115 | None:intergenic | 25.0% |
| !! | CTTTTCTTTTCAGTTTTTCA+TGG | + | chr4.3:53548214-53548233 | MS.gene45318:intron | 25.0% |
| !! | TACTTCACAATTGGTAATTT+AGG | - | chr4.3:53548100-53548119 | None:intergenic | 25.0% |
| !! | TCACAAATTCAGAAATTTTC+AGG | + | chr4.3:53546776-53546795 | MS.gene45318:intron | 25.0% |
| !!! | AAGTTCAAAGAGTATTGATA+TGG | - | chr4.3:53548047-53548066 | None:intergenic | 25.0% |
| !!! | AATCTTTTCTTCTTTTTTGC+AGG | + | chr4.3:53548976-53548995 | MS.gene45318:intron | 25.0% |
| !!! | AGACTACTTTATGTTTTTTC+AGG | + | chr4.3:53548271-53548290 | MS.gene45318:intron | 25.0% |
| !!! | CAGTTCATTTTTTGTTCAAA+AGG | - | chr4.3:53547015-53547034 | None:intergenic | 25.0% |
| !!! | TCTTTCGGTAGTAATTTTTT+TGG | + | chr4.3:53548599-53548618 | MS.gene45318:intron | 25.0% |
| !!! | TTTTATTTCACTGCAAAGTA+TGG | + | chr4.3:53549137-53549156 | MS.gene45318:CDS | 25.0% |
| AATATAATGCACCAAAGTCA+AGG | + | chr4.3:53546708-53546727 | MS.gene45318:intron | 30.0% | |
| AATGAATGCAAGAATGTGTT+AGG | - | chr4.3:53548711-53548730 | None:intergenic | 30.0% | |
| AATGCTTAGCATAGAAGAAT+AGG | + | chr4.3:53547845-53547864 | MS.gene45318:intron | 30.0% | |
| ACAATACTGAAAGATGCATA+TGG | - | chr4.3:53547120-53547139 | None:intergenic | 30.0% | |
| ATGCTGGTATAAGTACAAAT+CGG | - | chr4.3:53549118-53549137 | None:intergenic | 30.0% | |
| ATTGGTATATGCATAGTTAG+CGG | + | chr4.3:53547535-53547554 | MS.gene45318:CDS | 30.0% | |
| CAACATTCTAGATTGTTATG+TGG | + | chr4.3:53546824-53546843 | MS.gene45318:intron | 30.0% | |
| CAATACTGAAAGATGCATAT+GGG | - | chr4.3:53547119-53547138 | None:intergenic | 30.0% | |
| GTATCTTCTGATAAAAATCC+AGG | - | chr4.3:53548410-53548429 | None:intergenic | 30.0% | |
| GTTGAAGAAAAAGAGATATG+AGG | - | chr4.3:53547097-53547116 | None:intergenic | 30.0% | |
| TATGGTTAATAGGTAAAGGA+TGG | + | chr4.3:53549435-53549454 | MS.gene45318:CDS | 30.0% | |
| TGGTTATGGTTAATAGGTAA+AGG | + | chr4.3:53549431-53549450 | MS.gene45318:CDS | 30.0% | |
| TTATATATTACCTGAAGACG+TGG | - | chr4.3:53546348-53546367 | None:intergenic | 30.0% | |
| TTCTGATCCATAAATTTGTG+TGG | + | chr4.3:53548521-53548540 | MS.gene45318:intron | 30.0% | |
| TTTGCAGTGAAATAAAATGC+TGG | - | chr4.3:53549134-53549153 | None:intergenic | 30.0% | |
| ! | AACCTTGTTGTAAATTCCAT+TGG | - | chr4.3:53547650-53547669 | None:intergenic | 30.0% |
| ! | CACATAACAATCTAGAATGT+TGG | - | chr4.3:53546826-53546845 | None:intergenic | 30.0% |
| ! | GGATTTTTATCAGAAGATAC+CGG | + | chr4.3:53548410-53548429 | MS.gene45318:CDS | 30.0% |
| !!! | AATTTTTTTTGGCATTGGCA+GGG | + | chr4.3:53546435-53546454 | MS.gene45318:intron | 30.0% |
| !!! | TAATTTTTTTTGGCATTGGC+AGG | + | chr4.3:53546434-53546453 | MS.gene45318:intron | 30.0% |
| !!! | TTTATGTTTTTTCAGGTCAC+CGG | + | chr4.3:53548278-53548297 | MS.gene45318:intron | 30.0% |
| AAACAATACTTCTCCAAGTG+AGG | - | chr4.3:53548194-53548213 | None:intergenic | 35.0% | |
| AAATGCCTTGGGAAATATCT+TGG | + | chr4.3:53549364-53549383 | MS.gene45318:CDS | 35.0% | |
| AAATTGAACCAAAGAGGACT+TGG | - | chr4.3:53546869-53546888 | None:intergenic | 35.0% | |
| ATAGACACTTCACTACTTCA+GGG | - | chr4.3:53546757-53546776 | None:intergenic | 35.0% | |
| CAAAACTCAATACAAGGAAC+CGG | + | chr4.3:53547331-53547350 | MS.gene45318:CDS | 35.0% | |
| CACCAATGGAATTTACAACA+AGG | + | chr4.3:53547645-53547664 | MS.gene45318:intron | 35.0% | |
| CACTGAAAATTGAACCAAAG+AGG | - | chr4.3:53546875-53546894 | None:intergenic | 35.0% | |
| CTCAAATTGCTTTGATTCTC+CGG | - | chr4.3:53548300-53548319 | None:intergenic | 35.0% | |
| GAACGATAGTACTTCACAAT+TGG | - | chr4.3:53548109-53548128 | None:intergenic | 35.0% | |
| GAATCCACCACACAAATTTA+TGG | - | chr4.3:53548531-53548550 | None:intergenic | 35.0% | |
| GATGATAATTCTGCACAAAG+AGG | - | chr4.3:53547239-53547258 | None:intergenic | 35.0% | |
| GATGATGCTAAATCCAACTA+CGG | - | chr4.3:53547490-53547509 | None:intergenic | 35.0% | |
| GATTTAGCATCATCTGGAAA+AGG | + | chr4.3:53547496-53547515 | MS.gene45318:CDS | 35.0% | |
| GGATTAATCCAAGGACTAAT+CGG | + | chr4.3:53546666-53546685 | MS.gene45318:intron | 35.0% | |
| GTGTATATCCAGATAGATTC+CGG | - | chr4.3:53547353-53547372 | None:intergenic | 35.0% | |
| GTTAAAAACCAAGTCCTCTT+TGG | + | chr4.3:53546858-53546877 | MS.gene45318:intron | 35.0% | |
| TAGTTGGATTTAGCATCATC+TGG | + | chr4.3:53547490-53547509 | MS.gene45318:intron | 35.0% | |
| TATAATGCATGGGATCTTGT+CGG | + | chr4.3:53549023-53549042 | MS.gene45318:CDS | 35.0% | |
| TCCTTGGATTAATCCTTCTA+CGG | - | chr4.3:53546661-53546680 | None:intergenic | 35.0% | |
| TCTTTCTTAGGGTTAACCAA+TGG | + | chr4.3:53549188-53549207 | MS.gene45318:CDS | 35.0% | |
| TGATCCATAAATTTGTGTGG+TGG | + | chr4.3:53548524-53548543 | MS.gene45318:intron | 35.0% | |
| TGCTGGTATAAGTACAAATC+GGG | - | chr4.3:53549117-53549136 | None:intergenic | 35.0% | |
| TGGAAAAGAACATAACTGCA+TGG | - | chr4.3:53548027-53548046 | None:intergenic | 35.0% | |
| TTCTTCACCTTATAGCCTTT+AGG | - | chr4.3:53549245-53549264 | None:intergenic | 35.0% | |
| TTGTTCCAAAAGCAAATGGT+TGG | - | chr4.3:53547287-53547306 | None:intergenic | 35.0% | |
| ! | AACATTATCCGATTAGTCCT+TGG | - | chr4.3:53546677-53546696 | None:intergenic | 35.0% |
| ! | ACTCTTTTTCTTGAGCTCTA+TGG | + | chr4.3:53547371-53547390 | MS.gene45318:CDS | 35.0% |
| ! | GAAGTACTATCGTTCAAAAG+CGG | + | chr4.3:53548114-53548133 | MS.gene45318:CDS | 35.0% |
| ! | GCTGATTGGTTATGGTTAAT+AGG | + | chr4.3:53549425-53549444 | MS.gene45318:CDS | 35.0% |
| ! | GTATACCAACCATTTGCTTT+TGG | + | chr4.3:53547279-53547298 | MS.gene45318:CDS | 35.0% |
| !!! | ACCATTTGCTTTTGGAACAA+TGG | + | chr4.3:53547287-53547306 | MS.gene45318:CDS | 35.0% |
| AATCATTCCTCCTTGTGCAA+GGG | - | chr4.3:53547581-53547600 | None:intergenic | 40.0% | |
| AATGCATCCAGATTTCATGC+AGG | + | chr4.3:53547615-53547634 | MS.gene45318:CDS | 40.0% | |
| ACGAGGCAAAACTCAATACA+AGG | + | chr4.3:53547325-53547344 | MS.gene45318:CDS | 40.0% | |
| ACTGCAAAGTATGGTACTCA+AGG | + | chr4.3:53549146-53549165 | MS.gene45318:CDS | 40.0% | |
| AGTTTACGGATCAACATACC+AGG | - | chr4.3:53548453-53548472 | None:intergenic | 40.0% | |
| ATGCACCAAAGTCAAGGAAT+TGG | + | chr4.3:53546714-53546733 | MS.gene45318:intron | 40.0% | |
| CAAAGTATGGTACTCAAGGT+TGG | + | chr4.3:53549150-53549169 | MS.gene45318:CDS | 40.0% | |
| CAACACCAAGATATTTCCCA+AGG | - | chr4.3:53549372-53549391 | None:intergenic | 40.0% | |
| CAGGGTATATAGCTAATGTC+AGG | - | chr4.3:53548391-53548410 | None:intergenic | 40.0% | |
| CTATGCCAATTCCTTGACTT+TGG | - | chr4.3:53546722-53546741 | None:intergenic | 40.0% | |
| CTGACATTAGCTATATACCC+TGG | + | chr4.3:53548389-53548408 | MS.gene45318:CDS | 40.0% | |
| GATACCGGAAAACACAGTTT+AGG | + | chr4.3:53548425-53548444 | MS.gene45318:CDS | 40.0% | |
| GATAGACACTTCACTACTTC+AGG | - | chr4.3:53546758-53546777 | None:intergenic | 40.0% | |
| GCAGAATTATCATCCCTCTA+GGG | + | chr4.3:53547245-53547264 | MS.gene45318:intron | 40.0% | |
| GCCATTGTTCCAAAAGCAAA+TGG | - | chr4.3:53547291-53547310 | None:intergenic | 40.0% | |
| TAGCATCATCTGGAAAAGGA+GGG | + | chr4.3:53547500-53547519 | MS.gene45318:CDS | 40.0% | |
| TATATTACCTGAAGACGTGG+TGG | - | chr4.3:53546345-53546364 | None:intergenic | 40.0% | |
| TCAAAGCAATTTGAGCGCAA+AGG | + | chr4.3:53548305-53548324 | MS.gene45318:CDS | 40.0% | |
| TCCAACTACGGCAAGTAAAT+AGG | - | chr4.3:53547478-53547497 | None:intergenic | 40.0% | |
| TCCTATTTACTTGCCGTAGT+TGG | + | chr4.3:53547474-53547493 | MS.gene45318:intron | 40.0% | |
| TGCAGAATTATCATCCCTCT+AGG | + | chr4.3:53547244-53547263 | MS.gene45318:intron | 40.0% | |
| TTAGCATCATCTGGAAAAGG+AGG | + | chr4.3:53547499-53547518 | MS.gene45318:CDS | 40.0% | |
| TTCTGCACCTAAAGGCTATA+AGG | + | chr4.3:53549235-53549254 | MS.gene45318:CDS | 40.0% | |
| ! | GTGCACTAACATCTGTTTTG+AGG | + | chr4.3:53547751-53547770 | MS.gene45318:CDS | 40.0% |
| ! | GTGTAACAGCTGATTGGTTA+TGG | + | chr4.3:53549417-53549436 | MS.gene45318:CDS | 40.0% |
| ! | TGCATAGTTAGCGGTGTTTT+TGG | + | chr4.3:53547544-53547563 | MS.gene45318:CDS | 40.0% |
| ! | TTGTATTGAGTTTTGCCTCG+TGG | - | chr4.3:53547326-53547345 | None:intergenic | 40.0% |
| ! | TTGTTGCAGTCTTTTCTTGC+AGG | + | chr4.3:53547714-53547733 | MS.gene45318:intron | 40.0% |
| !! | ATCTTGGTGTTGTTCATCCT+TGG | + | chr4.3:53549380-53549399 | MS.gene45318:CDS | 40.0% |
| !! | ATGTTGGTTTGCTGGATTCT+TGG | + | chr4.3:53546471-53546490 | MS.gene45318:CDS | 40.0% |
| !! | GGGAAAATTTGCTGCAATGT+TGG | + | chr4.3:53546455-53546474 | MS.gene45318:intron | 40.0% |
| !! | TTTCCCAAGGCATTTTGTTC+AGG | - | chr4.3:53549359-53549378 | None:intergenic | 40.0% |
| !!! | ATCCTTGGAGGTATTTTTGC+AGG | + | chr4.3:53549395-53549414 | MS.gene45318:CDS | 40.0% |
| AACAGATGTTAGTGCACCTG+AGG | - | chr4.3:53547748-53547767 | None:intergenic | 45.0% | |
| AAGTACAAATCGGGCACAGA+CGG | - | chr4.3:53549108-53549127 | None:intergenic | 45.0% | |
| AAGTGAGAACACAGACAGTG+AGG | - | chr4.3:53549217-53549236 | None:intergenic | 45.0% | |
| ACAAGAGTAAGCACCCTAGA+GGG | - | chr4.3:53547261-53547280 | None:intergenic | 45.0% | |
| ACAAGGAACCGGAATCTATC+TGG | + | chr4.3:53547342-53547361 | MS.gene45318:CDS | 45.0% | |
| ATACTTCTCCAAGTGAGGTC+TGG | - | chr4.3:53548189-53548208 | None:intergenic | 45.0% | |
| ATGCTGACCTGCATGAAATC+TGG | - | chr4.3:53547625-53547644 | None:intergenic | 45.0% | |
| CAATCATTCCTCCTTGTGCA+AGG | - | chr4.3:53547582-53547601 | None:intergenic | 45.0% | |
| CACCTGCAAAAATACCTCCA+AGG | - | chr4.3:53549400-53549419 | None:intergenic | 45.0% | |
| CTTGCACAAGGAGGAATGAT+TGG | + | chr4.3:53547580-53547599 | MS.gene45318:CDS | 45.0% | |
| GAAAACACAGTTTAGGCACC+TGG | + | chr4.3:53548432-53548451 | MS.gene45318:CDS | 45.0% | |
| GCCGTAGAAGGATTAATCCA+AGG | + | chr4.3:53546657-53546676 | MS.gene45318:intron | 45.0% | |
| GGACCTGAACAAAATGCCTT+GGG | + | chr4.3:53549353-53549372 | MS.gene45318:CDS | 45.0% | |
| GTTCTCACTTCTGCACCTAA+AGG | + | chr4.3:53549227-53549246 | MS.gene45318:CDS | 45.0% | |
| TACAAGAGTAAGCACCCTAG+AGG | - | chr4.3:53547262-53547281 | None:intergenic | 45.0% | |
| TCTAAGGATGGTCTTCGCAA+AGG | + | chr4.3:53547801-53547820 | MS.gene45318:CDS | 45.0% | |
| TCTGTCTGGACTCCATGTTT+AGG | - | chr4.3:53549073-53549092 | None:intergenic | 45.0% | |
| TTGCAGGTGTAACAGCTGAT+TGG | + | chr4.3:53549411-53549430 | MS.gene45318:CDS | 45.0% | |
| TTTGCTGGATTCTTGGCAAC+GGG | + | chr4.3:53546478-53546497 | MS.gene45318:CDS | 45.0% | |
| ! | GGTGCCTAAACTGTGTTTTC+CGG | - | chr4.3:53548432-53548451 | None:intergenic | 45.0% |
| ! | GTTTGCTGGATTCTTGGCAA+CGG | + | chr4.3:53546477-53546496 | MS.gene45318:CDS | 45.0% |
| !! | TTGCTGCAATGTTGGTTTGC+TGG | + | chr4.3:53546463-53546482 | MS.gene45318:CDS | 45.0% |
| !! | TTGGTGTTGTTCATCCTTGG+AGG | + | chr4.3:53549383-53549402 | MS.gene45318:CDS | 45.0% |
| !! | AAAAAAAAAAAAAAAAACTA+TGG | - | chr4.3:53548854-53548873 | None:intergenic | 5.0% |
| ACAGACAGTGAGGTAGCCAT+TGG | - | chr4.3:53549207-53549226 | None:intergenic | 50.0% | |
| ATAGCAGATGCCCTTGCACA+AGG | + | chr4.3:53547568-53547587 | MS.gene45318:CDS | 50.0% | |
| ATGCAGGTCAGCATCACCAA+TGG | + | chr4.3:53547631-53547650 | MS.gene45318:intron | 50.0% | |
| ATTACCTGAAGACGTGGTGG+AGG | - | chr4.3:53546342-53546361 | None:intergenic | 50.0% | |
| CGTTCAAAAGCGGCATCAGA+AGG | + | chr4.3:53548124-53548143 | MS.gene45318:CDS | 50.0% | |
| GGAGGGCTTGGAACTTTCAT+TGG | + | chr4.3:53547517-53547536 | MS.gene45318:CDS | 50.0% | |
| GGCAATACTTGCTTACCACG+AGG | + | chr4.3:53547308-53547327 | MS.gene45318:CDS | 50.0% | |
| GGGACCTGAACAAAATGCCT+TGG | + | chr4.3:53549352-53549371 | MS.gene45318:intron | 50.0% | |
| GTTGGTATCCAGACCTCACT+TGG | + | chr4.3:53548178-53548197 | MS.gene45318:CDS | 50.0% | |
| TCATCTGGAAAAGGAGGGCT+TGG | + | chr4.3:53547505-53547524 | MS.gene45318:CDS | 50.0% | |
| TTGCTGGATTCTTGGCAACG+GGG | + | chr4.3:53546479-53546498 | MS.gene45318:CDS | 50.0% | |
| ! | GCAACGGGGTTCTTTTCACT+TGG | + | chr4.3:53546493-53546512 | MS.gene45318:CDS | 50.0% |
| AAATCGGGCACAGACGGAAG+CGG | - | chr4.3:53549102-53549121 | None:intergenic | 55.0% | |
| GCAGCTGATCTTGCTGCAGT+TGG | + | chr4.3:53548160-53548179 | MS.gene45318:CDS | 55.0% | |
| GGAAGCGGTGATCATCTGTC+TGG | - | chr4.3:53549087-53549106 | None:intergenic | 55.0% | |
| TCTCGGTGATCAGCCGTAGA+AGG | + | chr4.3:53546645-53546664 | MS.gene45318:intron | 55.0% | |
| CTTGCAGGTGAAGCAGCCTC+AGG | + | chr4.3:53547729-53547748 | MS.gene45318:CDS | 60.0% | |
| GCAGATGCCCTTGCACAAGG+AGG | + | chr4.3:53547571-53547590 | MS.gene45318:CDS | 60.0% | |
| TGAGCCTCCACCACGTCTTC+AGG | + | chr4.3:53546335-53546354 | MS.gene45318:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 53546324 | 53549460 | 53546324 | ID=MS.gene45318 |
| chr4.3 | mRNA | 53546324 | 53549460 | 53546324 | ID=MS.gene45318.t1;Parent=MS.gene45318 |
| chr4.3 | exon | 53546324 | 53546356 | 53546324 | ID=MS.gene45318.t1.exon1;Parent=MS.gene45318.t1 |
| chr4.3 | CDS | 53546324 | 53546356 | 53546324 | ID=cds.MS.gene45318.t1;Parent=MS.gene45318.t1 |
| chr4.3 | exon | 53546456 | 53546560 | 53546456 | ID=MS.gene45318.t1.exon2;Parent=MS.gene45318.t1 |
| chr4.3 | CDS | 53546456 | 53546560 | 53546456 | ID=cds.MS.gene45318.t1;Parent=MS.gene45318.t1 |
| chr4.3 | exon | 53547249 | 53547404 | 53547249 | ID=MS.gene45318.t1.exon3;Parent=MS.gene45318.t1 |
| chr4.3 | CDS | 53547249 | 53547404 | 53547249 | ID=cds.MS.gene45318.t1;Parent=MS.gene45318.t1 |
| chr4.3 | exon | 53547493 | 53547636 | 53547493 | ID=MS.gene45318.t1.exon4;Parent=MS.gene45318.t1 |
| chr4.3 | CDS | 53547493 | 53547636 | 53547493 | ID=cds.MS.gene45318.t1;Parent=MS.gene45318.t1 |
| chr4.3 | exon | 53547723 | 53547828 | 53547723 | ID=MS.gene45318.t1.exon5;Parent=MS.gene45318.t1 |
| chr4.3 | CDS | 53547723 | 53547828 | 53547723 | ID=cds.MS.gene45318.t1;Parent=MS.gene45318.t1 |
| chr4.3 | exon | 53548032 | 53548204 | 53548032 | ID=MS.gene45318.t1.exon6;Parent=MS.gene45318.t1 |
| chr4.3 | CDS | 53548032 | 53548204 | 53548032 | ID=cds.MS.gene45318.t1;Parent=MS.gene45318.t1 |
| chr4.3 | exon | 53548293 | 53548453 | 53548293 | ID=MS.gene45318.t1.exon7;Parent=MS.gene45318.t1 |
| chr4.3 | CDS | 53548293 | 53548453 | 53548293 | ID=cds.MS.gene45318.t1;Parent=MS.gene45318.t1 |
| chr4.3 | exon | 53548998 | 53549256 | 53548998 | ID=MS.gene45318.t1.exon8;Parent=MS.gene45318.t1 |
| chr4.3 | CDS | 53548998 | 53549256 | 53548998 | ID=cds.MS.gene45318.t1;Parent=MS.gene45318.t1 |
| chr4.3 | exon | 53549353 | 53549460 | 53549353 | ID=MS.gene45318.t1.exon9;Parent=MS.gene45318.t1 |
| chr4.3 | CDS | 53549353 | 53549460 | 53549353 | ID=cds.MS.gene45318.t1;Parent=MS.gene45318.t1 |
| Gene Sequence |
| Protein sequence |
