Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064217.t1 | KEH17552.1 | 97.3 | 414 | 11 | 0 | 1 | 414 | 1 | 414 | 2.50E-227 | 797.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064217.t1 | Q9M0Y3 | 68.3 | 410 | 129 | 1 | 3 | 412 | 6 | 414 | 5.4e-162 | 572.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064217.t1 | A0A072TJE0 | 97.3 | 414 | 11 | 0 | 1 | 414 | 1 | 414 | 1.8e-227 | 797.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene064217 | MS.gene45316 | PPI |
| MS.gene064217 | MS.gene51416 | PPI |
| MS.gene064217 | MS.gene51414 | PPI |
| MS.gene064217 | MS.gene046074 | PPI |
| MS.gene064217 | MS.gene043342 | PPI |
| MS.gene064217 | MS.gene064214 | PPI |
| MS.gene35750 | MS.gene064217 | PPI |
| MS.gene064217 | MS.gene046071 | PPI |
| MS.gene064217 | MS.gene31551 | PPI |
| MS.gene064217 | MS.gene35750 | PPI |
| MS.gene064217 | MS.gene45320 | PPI |
| MS.gene064217 | MS.gene046073 | PPI |
| MS.gene064217 | MS.gene029003 | PPI |
| MS.gene064217 | MS.gene45318 | PPI |
| MS.gene064217 | MS.gene51411 | PPI |
| MS.gene064217 | MS.gene064218 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064217.t1 | MTR_0008s0130 | 97.343 | 414 | 11 | 0 | 1 | 414 | 1 | 414 | 0.0 | 818 |
| MS.gene064217.t1 | MTR_0008s0170 | 81.401 | 414 | 77 | 0 | 1 | 414 | 1 | 414 | 0.0 | 703 |
| MS.gene064217.t1 | MTR_4g050990 | 76.087 | 414 | 99 | 0 | 1 | 414 | 1 | 414 | 0.0 | 639 |
| MS.gene064217.t1 | MTR_2g089520 | 76.087 | 414 | 99 | 0 | 1 | 414 | 1 | 414 | 0.0 | 639 |
| MS.gene064217.t1 | MTR_1g071120 | 91.691 | 349 | 20 | 3 | 11 | 358 | 53 | 393 | 0.0 | 631 |
| MS.gene064217.t1 | MTR_2g047968 | 75.610 | 410 | 100 | 0 | 1 | 410 | 1 | 410 | 0.0 | 614 |
| MS.gene064217.t1 | MTR_2g011600 | 64.706 | 408 | 142 | 1 | 7 | 412 | 14 | 421 | 0.0 | 541 |
| MS.gene064217.t1 | MTR_2g011580 | 66.842 | 380 | 125 | 1 | 34 | 412 | 1 | 380 | 0.0 | 528 |
| MS.gene064217.t1 | MTR_2g011600 | 63.912 | 363 | 129 | 1 | 52 | 412 | 8 | 370 | 2.53e-168 | 476 |
| MS.gene064217.t1 | MTR_8g007285 | 55.647 | 363 | 159 | 1 | 52 | 412 | 2 | 364 | 6.84e-132 | 384 |
| MS.gene064217.t1 | MTR_0003s0470 | 33.656 | 413 | 238 | 11 | 11 | 410 | 26 | 415 | 1.27e-58 | 197 |
| MS.gene064217.t1 | MTR_3g462280 | 31.750 | 400 | 238 | 9 | 23 | 410 | 47 | 423 | 5.77e-49 | 172 |
| MS.gene064217.t1 | MTR_4g114710 | 27.804 | 428 | 256 | 9 | 1 | 410 | 6 | 398 | 1.08e-41 | 152 |
| MS.gene064217.t1 | MTR_2g011540 | 49.630 | 135 | 61 | 1 | 52 | 179 | 2 | 136 | 1.14e-35 | 128 |
| MS.gene064217.t1 | MTR_2g011530 | 61.957 | 92 | 34 | 1 | 278 | 368 | 2 | 93 | 3.19e-33 | 120 |
| MS.gene064217.t1 | MTR_2g011560 | 58.730 | 63 | 26 | 0 | 177 | 239 | 17 | 79 | 1.63e-16 | 75.9 |
| MS.gene064217.t1 | MTR_2g011570 | 66.667 | 45 | 15 | 0 | 137 | 181 | 1 | 45 | 2.15e-12 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064217.t1 | AT4G05120 | 68.293 | 410 | 129 | 1 | 3 | 412 | 6 | 414 | 0.0 | 588 |
| MS.gene064217.t1 | AT4G05120 | 68.293 | 410 | 129 | 1 | 3 | 412 | 6 | 414 | 0.0 | 588 |
| MS.gene064217.t1 | AT4G05110 | 64.634 | 410 | 144 | 1 | 3 | 412 | 6 | 414 | 0.0 | 559 |
| MS.gene064217.t1 | AT4G05110 | 64.634 | 410 | 144 | 1 | 3 | 412 | 6 | 414 | 0.0 | 559 |
| MS.gene064217.t1 | AT4G05110 | 64.390 | 410 | 145 | 1 | 3 | 412 | 6 | 414 | 0.0 | 558 |
| MS.gene064217.t1 | AT4G05140 | 63.902 | 410 | 148 | 0 | 3 | 412 | 6 | 415 | 0.0 | 543 |
| MS.gene064217.t1 | AT4G05130 | 60.922 | 412 | 160 | 1 | 3 | 414 | 6 | 416 | 0.0 | 533 |
| MS.gene064217.t1 | AT3G09990 | 61.481 | 405 | 155 | 1 | 11 | 414 | 13 | 417 | 0.0 | 519 |
| MS.gene064217.t1 | AT1G61630 | 59.459 | 407 | 164 | 1 | 7 | 412 | 8 | 414 | 3.51e-176 | 498 |
| MS.gene064217.t1 | AT1G70330 | 30.637 | 408 | 249 | 8 | 16 | 410 | 64 | 450 | 2.54e-55 | 189 |
| MS.gene064217.t1 | AT1G02630 | 27.182 | 401 | 255 | 7 | 16 | 410 | 20 | 389 | 2.10e-41 | 151 |
| MS.gene064217.t1 | AT1G02630 | 27.778 | 198 | 141 | 2 | 16 | 212 | 20 | 216 | 3.68e-21 | 94.4 |
Find 93 sgRNAs with CRISPR-Local
Find 181 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTACTATCTTATTCTGTTTC+CGG | 0.185228 | 4.2:+55841068 | MS.gene064217:CDS |
| GCTGATTGGTTATGGTTAAT+TGG | 0.197122 | 4.2:+55843889 | MS.gene064217:CDS |
| ATAATGTTGACATCTTTCTT+AGG | 0.207250 | 4.2:+55843640 | MS.gene064217:CDS |
| TACTTCACAATTGGTAATTT+AGG | 0.225152 | 4.2:-55842589 | None:intergenic |
| GTATACCAACCATTTGCTTT+TGG | 0.251495 | 4.2:+55841807 | MS.gene064217:CDS |
| AGCAATATTTGAAAATTCTA+AGG | 0.295643 | 4.2:+55842314 | MS.gene064217:CDS |
| CATGAAATCTGGATGCATTA+AGG | 0.296180 | 4.2:-55842140 | None:intergenic |
| CTCAAATTGCTTTGATTCTC+CGG | 0.314278 | 4.2:-55842789 | None:intergenic |
| GGAAGCGGTGATCATCTTTC+TGG | 0.314654 | 4.2:-55843548 | None:intergenic |
| TGAGCCTCCACCACGTCTTC+AGG | 0.330707 | 4.2:+55840868 | MS.gene064217:CDS |
| ACAAGGAAGCGGAATCTATC+TGG | 0.339747 | 4.2:+55841870 | MS.gene064217:CDS |
| TCTTTCTGGACTCCATGTTC+AGG | 0.340679 | 4.2:-55843534 | None:intergenic |
| TTCTTCACCTTATAGCCTTT+AGG | 0.351038 | 4.2:-55843706 | None:intergenic |
| TTGCTGCAATGTTGGTTTGC+TGG | 0.356438 | 4.2:+55840992 | MS.gene064217:CDS |
| TTCTGCACCTAAAGGCTATA+AGG | 0.356805 | 4.2:+55843699 | MS.gene064217:CDS |
| GTGTAACAGCTGATTGGTTA+TGG | 0.360918 | 4.2:+55843881 | MS.gene064217:CDS |
| ATGCTGACCTGCATGAAATC+TGG | 0.362551 | 4.2:-55842151 | None:intergenic |
| AAGGAAATAAGCAGTTGTTA+TGG | 0.373767 | 4.2:+55842816 | MS.gene064217:CDS |
| ATGTTGGTTTGCTGGATTCT+TGG | 0.385441 | 4.2:+55841000 | MS.gene064217:CDS |
| GGAGGGCTTGGAACTTTCAT+TGG | 0.385609 | 4.2:+55842046 | MS.gene064217:CDS |
| TTTGCTGGATTCTTGGCAAC+GGG | 0.401023 | 4.2:+55841007 | MS.gene064217:CDS |
| GAACGATAGTACTTCACAAT+TGG | 0.401062 | 4.2:-55842598 | None:intergenic |
| ATCTTGGTGTTGTTCATCCT+TGG | 0.401749 | 4.2:+55843844 | MS.gene064217:CDS |
| TCTTGCAGGTGAAGCAGCCT+CGG | 0.405301 | 4.2:+55842257 | MS.gene064217:CDS |
| AGGAAATAAGCAGTTGTTAT+GGG | 0.407173 | 4.2:+55842817 | MS.gene064217:CDS |
| AAGTTCAAATAGTATTGATA+TGG | 0.411554 | 4.2:-55842536 | None:intergenic |
| AAATGCATTGGGAAATATCT+TGG | 0.414446 | 4.2:+55843828 | MS.gene064217:CDS |
| ATGCTGGTATAAGTACAAAT+CGG | 0.414479 | 4.2:-55843579 | None:intergenic |
| TAGTTGGATTTAGCATCATC+TGG | 0.418817 | 4.2:+55842019 | MS.gene064217:intron |
| TAATGTTGACATCTTTCTTA+GGG | 0.423378 | 4.2:+55843641 | MS.gene064217:CDS |
| TTGGTGTTGTTCATCCTTGG+AGG | 0.430268 | 4.2:+55843847 | MS.gene064217:CDS |
| TCATCTGGAAAAGGAGGGCT+TGG | 0.431588 | 4.2:+55842034 | MS.gene064217:CDS |
| GCAACGGGGTTCTCTTCACT+TGG | 0.436519 | 4.2:+55841022 | MS.gene064217:CDS |
| GCCATTGTTCCAAAAGCAAA+TGG | 0.439292 | 4.2:-55841816 | None:intergenic |
| GGGAAAATTTGCTGCAATGT+TGG | 0.439962 | 4.2:+55840984 | MS.gene064217:intron |
| CTTGCACAAGGAGGAATGAT+TGG | 0.442301 | 4.2:+55842109 | MS.gene064217:CDS |
| ATACTTCTCCAAGTGAGGTC+TGG | 0.445286 | 4.2:-55842678 | None:intergenic |
| CTTGCAGGTGAAGCAGCCTC+GGG | 0.449992 | 4.2:+55842258 | MS.gene064217:CDS |
| TTGCAGGTGTAACAGCTGAT+TGG | 0.468133 | 4.2:+55843875 | MS.gene064217:CDS |
| TGCTGGTATAAGTACAAATC+GGG | 0.473081 | 4.2:-55843578 | None:intergenic |
| GTTTGCTGGATTCTTGGCAA+CGG | 0.481193 | 4.2:+55841006 | MS.gene064217:CDS |
| GATTTAGCATCATCTGGAAA+AGG | 0.491285 | 4.2:+55842025 | MS.gene064217:CDS |
| TGCAGAATTATCATCCCTCT+AGG | 0.499664 | 4.2:+55841772 | MS.gene064217:intron |
| GATACCGGAAAACACAGTTT+AGG | 0.503492 | 4.2:+55842917 | MS.gene064217:CDS |
| GGACCTGAACAAAATGCATT+GGG | 0.506071 | 4.2:+55843817 | MS.gene064217:CDS |
| GCAGCTGATCTTGCTGCAGT+TGG | 0.514654 | 4.2:+55842652 | MS.gene064217:CDS |
| GGGACCTGAACAAAATGCAT+TGG | 0.516104 | 4.2:+55843816 | MS.gene064217:intron |
| CAATCATTCCTCCTTGTGCA+AGG | 0.525533 | 4.2:-55842108 | None:intergenic |
| TATAATGCATGGGATCTTGT+CGG | 0.534381 | 4.2:+55843487 | MS.gene064217:CDS |
| GTTCTCACTTCTGCACCTAA+AGG | 0.535854 | 4.2:+55843691 | MS.gene064217:CDS |
| CAGGGTATATAGCTAATGTC+AGG | 0.540396 | 4.2:-55842880 | None:intergenic |
| CAAAGTATGGTACTCAAGGT+TGG | 0.542078 | 4.2:+55843614 | MS.gene064217:CDS |
| GTTGGCATCCAGACCTCACT+TGG | 0.543828 | 4.2:+55842670 | MS.gene064217:CDS |
| CGTTCAAAAGCGGCATCAGA+AGG | 0.554037 | 4.2:+55842616 | MS.gene064217:CDS |
| TTTGCAGTGAAATAAAATGC+TGG | 0.556803 | 4.2:-55843595 | None:intergenic |
| ATTGGTATATGCATAGTTAG+CGG | 0.556867 | 4.2:+55842064 | MS.gene064217:CDS |
| AAGTACAAATCGGGCACAGA+CGG | 0.559597 | 4.2:-55843569 | None:intergenic |
| ATATTTGAAAATTCTAAGGA+TGG | 0.560030 | 4.2:+55842318 | MS.gene064217:CDS |
| TGGTTATGGTTAATTGGCAA+AGG | 0.565605 | 4.2:+55843895 | MS.gene064217:CDS |
| TTAGCATCATCTGGAAAAGG+AGG | 0.566396 | 4.2:+55842028 | MS.gene064217:CDS |
| ACTGCAAAGTATGGTACTCA+AGG | 0.567878 | 4.2:+55843610 | MS.gene064217:CDS |
| TACAAGAGTAAGCACCCTAG+AGG | 0.583761 | 4.2:-55841787 | None:intergenic |
| ATTGATTAAAATCCTGAACA+TGG | 0.588743 | 4.2:+55843522 | MS.gene064217:CDS |
| CAAAACTCAATACAAGGAAG+CGG | 0.590950 | 4.2:+55841859 | MS.gene064217:CDS |
| TTGTTCCAAAAGCAAATGGT+TGG | 0.591187 | 4.2:-55841812 | None:intergenic |
| TATGGTTAATTGGCAAAGGA+TGG | 0.592768 | 4.2:+55843899 | MS.gene064217:CDS |
| ACGAGGCAAAACTCAATACA+AGG | 0.597475 | 4.2:+55841853 | MS.gene064217:CDS |
| TCTTTCTTAGGGTTAACCAA+TGG | 0.599139 | 4.2:+55843652 | MS.gene064217:CDS |
| TCAAAGCAATTTGAGCGCAA+AGG | 0.603782 | 4.2:+55842797 | MS.gene064217:CDS |
| AATCATTCCTCCTTGTGCAA+GGG | 0.604579 | 4.2:-55842107 | None:intergenic |
| AAATCGGGCACAGACGGAAG+CGG | 0.605831 | 4.2:-55843563 | None:intergenic |
| ACAGACAGTGAGGTAGCCAT+TGG | 0.606633 | 4.2:-55843668 | None:intergenic |
| ATAGCAGATGCCCTTGCACA+AGG | 0.613845 | 4.2:+55842097 | MS.gene064217:CDS |
| AATTGCTATGTATAATGCAT+GGG | 0.613961 | 4.2:+55843477 | MS.gene064217:CDS |
| TGGAGGCTCAATTTCAGCCA+TGG | 0.614054 | 4.2:-55840855 | None:intergenic |
| ATTACCTGAAGACGTGGTGG+AGG | 0.615067 | 4.2:-55840872 | None:intergenic |
| TAATTGCTATGTATAATGCA+TGG | 0.615728 | 4.2:+55843476 | MS.gene064217:CDS |
| GCAGAATTATCATCCCTCTA+GGG | 0.615909 | 4.2:+55841773 | MS.gene064217:intron |
| TCTAAGGATGGTCTTCGCAA+AGG | 0.620135 | 4.2:+55842330 | MS.gene064217:CDS |
| AAACAATACTTCTCCAAGTG+AGG | 0.625275 | 4.2:-55842683 | None:intergenic |
| AATGCATCCAGATTTCATGC+AGG | 0.629380 | 4.2:+55842144 | MS.gene064217:CDS |
| GAAAACACAGTTTAGGCACC+TGG | 0.634136 | 4.2:+55842924 | MS.gene064217:CDS |
| CTGACATTAGCTATATACCC+TGG | 0.634648 | 4.2:+55842881 | MS.gene064217:CDS |
| TAGCATCATCTGGAAAAGGA+GGG | 0.637573 | 4.2:+55842029 | MS.gene064217:CDS |
| AACAGATGTTAGTGCACCCG+AGG | 0.637699 | 4.2:-55842274 | None:intergenic |
| ACAAGAGTAAGCACCCTAGA+GGG | 0.641862 | 4.2:-55841786 | None:intergenic |
| TTATGTATTACCTGAAGACG+TGG | 0.642686 | 4.2:-55840878 | None:intergenic |
| TTGCTGGATTCTTGGCAACG+GGG | 0.647875 | 4.2:+55841008 | MS.gene064217:CDS |
| AAGTGAGAACACAGACAGTG+AGG | 0.670493 | 4.2:-55843678 | None:intergenic |
| GAAGTACTATCGTTCAAAAG+CGG | 0.681297 | 4.2:+55842606 | MS.gene064217:CDS |
| TGTATTACCTGAAGACGTGG+TGG | 0.682157 | 4.2:-55840875 | None:intergenic |
| GCAGATGCCCTTGCACAAGG+AGG | 0.698443 | 4.2:+55842100 | MS.gene064217:CDS |
| GGCAATACTTGCTTACCACG+AGG | 0.744049 | 4.2:+55841836 | MS.gene064217:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAATTAGTATCTTAA+AGG | - | chr4.2:55843733-55843752 | None:intergenic | 10.0% |
| !!! | GTTTTAAAATTAAAAGTTTA+TGG | - | chr4.2:55843206-55843225 | None:intergenic | 10.0% |
| !! | CAATATATGCAAAAATTTAA+TGG | + | chr4.2:55842212-55842231 | MS.gene064217:intron | 15.0% |
| !! | TTAAAATTGGATATTAAAAC+TGG | - | chr4.2:55841448-55841467 | None:intergenic | 15.0% |
| !! | TTATTCCTTATAGTTAAAAT+TGG | - | chr4.2:55841461-55841480 | None:intergenic | 15.0% |
| !!! | AAGATACTAATTTTTTTTAG+AGG | + | chr4.2:55843735-55843754 | MS.gene064217:intron | 15.0% |
| !!! | AATATCCAATTTTAACTATA+AGG | + | chr4.2:55841453-55841472 | MS.gene064217:intron | 15.0% |
| !!! | ATTTCATCATTTAAATTTTC+TGG | + | chr4.2:55840953-55840972 | MS.gene064217:intron | 15.0% |
| !!! | TATTTTTTGTTTTGAAAACT+CGG | + | chr4.2:55841176-55841195 | MS.gene064217:intron | 15.0% |
| !!! | TTAATTTTGTTTTGAAATCT+CGG | + | chr4.2:55841143-55841162 | MS.gene064217:intron | 15.0% |
| !! | AAATGTATCAAATACATCAA+CGG | - | chr4.2:55841123-55841142 | None:intergenic | 20.0% |
| !! | AATTTGGTCAAAAAAAACTA+TGG | - | chr4.2:55843332-55843351 | None:intergenic | 20.0% |
| !! | ACTAATGAAAGATACATTTA+AGG | + | chr4.2:55843155-55843174 | MS.gene064217:intron | 20.0% |
| !! | AGCAATATTTGAAAATTCTA+AGG | + | chr4.2:55842314-55842333 | MS.gene064217:CDS | 20.0% |
| !! | CAAAGAATAATTGAAGTTTA+CGG | - | chr4.2:55842959-55842978 | None:intergenic | 20.0% |
| !! | GTCATAAACTTCAATTAAAT+AGG | + | chr4.2:55842988-55843007 | MS.gene064217:intron | 20.0% |
| !! | TAAATAGAAGACATATTTGA+TGG | + | chr4.2:55843124-55843143 | MS.gene064217:intron | 20.0% |
| !! | TTAATTGAAGTTTATGACTA+AGG | - | chr4.2:55842986-55843005 | None:intergenic | 20.0% |
| !!! | AAGTTCAAATAGTATTGATA+TGG | - | chr4.2:55842539-55842558 | None:intergenic | 20.0% |
| !!! | ATATTTGAAAATTCTAAGGA+TGG | + | chr4.2:55842318-55842337 | MS.gene064217:CDS | 20.0% |
| !!! | CACTTAATTTTTTGTTCAAA+AGG | - | chr4.2:55841564-55841583 | None:intergenic | 20.0% |
| !!! | GAGTTTTCAAAACAAAAAAT+AGG | - | chr4.2:55841177-55841196 | None:intergenic | 20.0% |
| !!! | TGTTTAGTGTTTTAAAACTA+TGG | - | chr4.2:55843359-55843378 | None:intergenic | 20.0% |
| ! | AACACACAAGTATTAATCAA+TGG | - | chr4.2:55843784-55843803 | None:intergenic | 25.0% |
| ! | AACATAAATGCATATTCTAG+AGG | - | chr4.2:55841971-55841990 | None:intergenic | 25.0% |
| ! | AATTGCTATGTATAATGCAT+GGG | + | chr4.2:55843477-55843496 | MS.gene064217:CDS | 25.0% |
| ! | ACATCTATTGTTCTATCTTT+CGG | + | chr4.2:55843076-55843095 | MS.gene064217:intron | 25.0% |
| ! | ATAATGTTGACATCTTTCTT+AGG | + | chr4.2:55843640-55843659 | MS.gene064217:CDS | 25.0% |
| ! | ATTGATTAAAATCCTGAACA+TGG | + | chr4.2:55843522-55843541 | MS.gene064217:CDS | 25.0% |
| ! | GAAAATTTCTGAATTTGTGA+TGG | - | chr4.2:55841312-55841331 | None:intergenic | 25.0% |
| ! | TAAACTGAATCTCAAAAGTT+AGG | - | chr4.2:55842737-55842756 | None:intergenic | 25.0% |
| ! | TAATGTTGACATCTTTCTTA+GGG | + | chr4.2:55843641-55843660 | MS.gene064217:CDS | 25.0% |
| ! | TAATTGCTATGTATAATGCA+TGG | + | chr4.2:55843476-55843495 | MS.gene064217:CDS | 25.0% |
| ! | TATCTTCTGATAAAAATCCA+GGG | - | chr4.2:55842901-55842920 | None:intergenic | 25.0% |
| ! | TCAGAGAATAGATAAATTAC+CGG | - | chr4.2:55841090-55841109 | None:intergenic | 25.0% |
| ! | TCTATTTGGTCTGTTAAATT+TGG | + | chr4.2:55842410-55842429 | MS.gene064217:intron | 25.0% |
| ! | TTAAAACTATGGAGTGAATT+TGG | - | chr4.2:55843348-55843367 | None:intergenic | 25.0% |
| ! | TTACTATCTTATTCTGTTTC+CGG | + | chr4.2:55841068-55841087 | MS.gene064217:CDS | 25.0% |
| !! | TACTTCACAATTGGTAATTT+AGG | - | chr4.2:55842592-55842611 | None:intergenic | 25.0% |
| !! | TCACAAATTCAGAAATTTTC+TGG | + | chr4.2:55841312-55841331 | MS.gene064217:intron | 25.0% |
| !!! | AATCTTTCCATATTTTTTGC+AGG | + | chr4.2:55843440-55843459 | MS.gene064217:intron | 25.0% |
| !!! | AGACTACTTTATGTTTTTTC+AGG | + | chr4.2:55842763-55842782 | MS.gene064217:intron | 25.0% |
| !!! | ATGTTCAGGATTTTAATCAA+TGG | - | chr4.2:55843523-55843542 | None:intergenic | 25.0% |
| !!! | TCATTTAAATTTTCTGGCAT+TGG | + | chr4.2:55840959-55840978 | MS.gene064217:intron | 25.0% |
| !!! | TCTTTCGGTAGTAATTTTTT+TGG | + | chr4.2:55843091-55843110 | MS.gene064217:intron | 25.0% |
| !!! | TGTGTGTTTTTACTTATGTA+GGG | + | chr4.2:55843796-55843815 | MS.gene064217:intron | 25.0% |
| !!! | TTGTGTGTTTTTACTTATGT+AGG | + | chr4.2:55843795-55843814 | MS.gene064217:intron | 25.0% |
| !!! | TTTTATTTCACTGCAAAGTA+TGG | + | chr4.2:55843601-55843620 | MS.gene064217:CDS | 25.0% |
| AAATGCATTGGGAAATATCT+TGG | + | chr4.2:55843828-55843847 | MS.gene064217:CDS | 30.0% | |
| AAATTGAACCAAAGAGAACT+TGG | - | chr4.2:55841414-55841433 | None:intergenic | 30.0% | |
| AACCTTGTAGTAAATTCCAT+TGG | - | chr4.2:55842179-55842198 | None:intergenic | 30.0% | |
| AAGGAAATAAGCAGTTGTTA+TGG | + | chr4.2:55842816-55842835 | MS.gene064217:CDS | 30.0% | |
| AATATATAGCACCAAAGTCA+AGG | + | chr4.2:55841256-55841275 | MS.gene064217:intron | 30.0% | |
| AGATTAACAAGCTCTTCAAT+TGG | - | chr4.2:55843425-55843444 | None:intergenic | 30.0% | |
| AGGAAATAAGCAGTTGTTAT+GGG | + | chr4.2:55842817-55842836 | MS.gene064217:CDS | 30.0% | |
| ATATGACAATTCCTTGACTT+TGG | - | chr4.2:55841270-55841289 | None:intergenic | 30.0% | |
| ATGCTGGTATAAGTACAAAT+CGG | - | chr4.2:55843582-55843601 | None:intergenic | 30.0% | |
| ATTGGTATATGCATAGTTAG+CGG | + | chr4.2:55842064-55842083 | MS.gene064217:CDS | 30.0% | |
| CAACATTCTAGATTGTTATG+TGG | + | chr4.2:55841360-55841379 | MS.gene064217:intron | 30.0% | |
| CATCTCAAAACAACAAAAGT+AGG | + | chr4.2:55843377-55843396 | MS.gene064217:intron | 30.0% | |
| GATTAACAAGCTCTTCAATT+GGG | - | chr4.2:55843424-55843443 | None:intergenic | 30.0% | |
| GTATCTTCTGATAAAAATCC+AGG | - | chr4.2:55842902-55842921 | None:intergenic | 30.0% | |
| GTATTCTGTGAAACATTATC+CGG | - | chr4.2:55841236-55841255 | None:intergenic | 30.0% | |
| GTTAAAAACCAAGTTCTCTT+TGG | + | chr4.2:55841403-55841422 | MS.gene064217:intron | 30.0% | |
| TCCTTGGATTAATCTTTCTA+AGG | - | chr4.2:55841209-55841228 | None:intergenic | 30.0% | |
| TTTGCAGTGAAATAAAATGC+TGG | - | chr4.2:55843598-55843617 | None:intergenic | 30.0% | |
| ! | CACATAACAATCTAGAATGT+TGG | - | chr4.2:55841362-55841381 | None:intergenic | 30.0% |
| ! | CTTTTCTCTTCAGTTTTTCA+TGG | + | chr4.2:55842706-55842725 | MS.gene064217:intron | 30.0% |
| ! | GGATTTTTATCAGAAGATAC+CGG | + | chr4.2:55842902-55842921 | MS.gene064217:CDS | 30.0% |
| !!! | GTGTTGTTTTAGTCTCTATT+TGG | + | chr4.2:55842396-55842415 | MS.gene064217:intron | 30.0% |
| !!! | TTTATGTTTTTTCAGGTCAC+CGG | + | chr4.2:55842770-55842789 | MS.gene064217:intron | 30.0% |
| AAACAATACTTCTCCAAGTG+AGG | - | chr4.2:55842686-55842705 | None:intergenic | 35.0% | |
| AATGCTTAGCATAGCAGAAT+AGG | + | chr4.2:55842374-55842393 | MS.gene064217:intron | 35.0% | |
| AGATTAATCCAAGGACTAAC+CGG | + | chr4.2:55841214-55841233 | MS.gene064217:intron | 35.0% | |
| CAAAACTCAATACAAGGAAG+CGG | + | chr4.2:55841859-55841878 | MS.gene064217:CDS | 35.0% | |
| CACCAATGGAATTTACTACA+AGG | + | chr4.2:55842174-55842193 | MS.gene064217:intron | 35.0% | |
| CATGAAATCTGGATGCATTA+AGG | - | chr4.2:55842143-55842162 | None:intergenic | 35.0% | |
| CTCAAATTGCTTTGATTCTC+CGG | - | chr4.2:55842792-55842811 | None:intergenic | 35.0% | |
| GAACGATAGTACTTCACAAT+TGG | - | chr4.2:55842601-55842620 | None:intergenic | 35.0% | |
| GAGCATACCTGCAAAAAATA+TGG | - | chr4.2:55843450-55843469 | None:intergenic | 35.0% | |
| GATGATAATTCTGCACAAAG+AGG | - | chr4.2:55841767-55841786 | None:intergenic | 35.0% | |
| GATGATGCTAAATCCAACTA+CGG | - | chr4.2:55842019-55842038 | None:intergenic | 35.0% | |
| GATTTAGCATCATCTGGAAA+AGG | + | chr4.2:55842025-55842044 | MS.gene064217:CDS | 35.0% | |
| GCCTTAGAAAGATTAATCCA+AGG | + | chr4.2:55841205-55841224 | MS.gene064217:intron | 35.0% | |
| TAGTTGGATTTAGCATCATC+TGG | + | chr4.2:55842019-55842038 | MS.gene064217:intron | 35.0% | |
| TATAATGCATGGGATCTTGT+CGG | + | chr4.2:55843487-55843506 | MS.gene064217:CDS | 35.0% | |
| TATGGTTAATTGGCAAAGGA+TGG | + | chr4.2:55843899-55843918 | MS.gene064217:CDS | 35.0% | |
| TCTTTCTTAGGGTTAACCAA+TGG | + | chr4.2:55843652-55843671 | MS.gene064217:CDS | 35.0% | |
| TGCTGGTATAAGTACAAATC+GGG | - | chr4.2:55843581-55843600 | None:intergenic | 35.0% | |
| TGGTTATGGTTAATTGGCAA+AGG | + | chr4.2:55843895-55843914 | MS.gene064217:CDS | 35.0% | |
| TTATGTATTACCTGAAGACG+TGG | - | chr4.2:55840881-55840900 | None:intergenic | 35.0% | |
| TTCTGATCCATAAATTTGCG+TGG | + | chr4.2:55843013-55843032 | MS.gene064217:intron | 35.0% | |
| TTCTTCACCTTATAGCCTTT+AGG | - | chr4.2:55843709-55843728 | None:intergenic | 35.0% | |
| TTGTTCCAAAAGCAAATGGT+TGG | - | chr4.2:55841815-55841834 | None:intergenic | 35.0% | |
| TTTGGTCTGTTAAATTTGGC+AGG | + | chr4.2:55842414-55842433 | MS.gene064217:intron | 35.0% | |
| ! | ACTCTTTTTCTTGAGCTCTA+TGG | + | chr4.2:55841899-55841918 | MS.gene064217:CDS | 35.0% |
| ! | GAAGTACTATCGTTCAAAAG+CGG | + | chr4.2:55842606-55842625 | MS.gene064217:CDS | 35.0% |
| ! | GCTGATTGGTTATGGTTAAT+TGG | + | chr4.2:55843889-55843908 | MS.gene064217:CDS | 35.0% |
| ! | GTATACCAACCATTTGCTTT+TGG | + | chr4.2:55841807-55841826 | MS.gene064217:CDS | 35.0% |
| ! | TTTCCCAATGCATTTTGTTC+AGG | - | chr4.2:55843823-55843842 | None:intergenic | 35.0% |
| !! | AATTTGTGATGGACACTTCA+GGG | - | chr4.2:55841301-55841320 | None:intergenic | 35.0% |
| !!! | ACCATTTGCTTTTGGAACAA+TGG | + | chr4.2:55841815-55841834 | MS.gene064217:CDS | 35.0% |
| !!! | TAAATTTTCTGGCATTGGCA+GGG | + | chr4.2:55840964-55840983 | MS.gene064217:intron | 35.0% |
| !!! | TTAAATTTTCTGGCATTGGC+AGG | + | chr4.2:55840963-55840982 | MS.gene064217:intron | 35.0% |
| AATCATTCCTCCTTGTGCAA+GGG | - | chr4.2:55842110-55842129 | None:intergenic | 40.0% | |
| AATGCATCCAGATTTCATGC+AGG | + | chr4.2:55842144-55842163 | MS.gene064217:CDS | 40.0% | |
| ACGAGGCAAAACTCAATACA+AGG | + | chr4.2:55841853-55841872 | MS.gene064217:CDS | 40.0% | |
| ACTGCAAAGTATGGTACTCA+AGG | + | chr4.2:55843610-55843629 | MS.gene064217:CDS | 40.0% | |
| AGTTTACGGATCAACATACC+AGG | - | chr4.2:55842945-55842964 | None:intergenic | 40.0% | |
| CAAAGTATGGTACTCAAGGT+TGG | + | chr4.2:55843614-55843633 | MS.gene064217:CDS | 40.0% | |
| CAGGGTATATAGCTAATGTC+AGG | - | chr4.2:55842883-55842902 | None:intergenic | 40.0% | |
| CTGACATTAGCTATATACCC+TGG | + | chr4.2:55842881-55842900 | MS.gene064217:CDS | 40.0% | |
| GAATCCACCACGCAAATTTA+TGG | - | chr4.2:55843023-55843042 | None:intergenic | 40.0% | |
| GATACCGGAAAACACAGTTT+AGG | + | chr4.2:55842917-55842936 | MS.gene064217:CDS | 40.0% | |
| GCAGAATTATCATCCCTCTA+GGG | + | chr4.2:55841773-55841792 | MS.gene064217:intron | 40.0% | |
| GCCATTGTTCCAAAAGCAAA+TGG | - | chr4.2:55841819-55841838 | None:intergenic | 40.0% | |
| GGACCTGAACAAAATGCATT+GGG | + | chr4.2:55843817-55843836 | MS.gene064217:CDS | 40.0% | |
| GTGAGAAACACAACACTGAA+AGG | - | chr4.2:55841661-55841680 | None:intergenic | 40.0% | |
| TAGCATCATCTGGAAAAGGA+GGG | + | chr4.2:55842029-55842048 | MS.gene064217:CDS | 40.0% | |
| TCAAAGCAATTTGAGCGCAA+AGG | + | chr4.2:55842797-55842816 | MS.gene064217:CDS | 40.0% | |
| TCCAACTACGGCAAGTAATT+AGG | - | chr4.2:55842007-55842026 | None:intergenic | 40.0% | |
| TCCTAATTACTTGCCGTAGT+TGG | + | chr4.2:55842003-55842022 | MS.gene064217:intron | 40.0% | |
| TGATCCATAAATTTGCGTGG+TGG | + | chr4.2:55843016-55843035 | MS.gene064217:intron | 40.0% | |
| TGCAGAATTATCATCCCTCT+AGG | + | chr4.2:55841772-55841791 | MS.gene064217:intron | 40.0% | |
| TGGCAAAGAACATAACTGCA+TGG | - | chr4.2:55842519-55842538 | None:intergenic | 40.0% | |
| TTAGCATCATCTGGAAAAGG+AGG | + | chr4.2:55842028-55842047 | MS.gene064217:CDS | 40.0% | |
| TTCTGCACCTAAAGGCTATA+AGG | + | chr4.2:55843699-55843718 | MS.gene064217:CDS | 40.0% | |
| ! | AACATTATCCGGTTAGTCCT+TGG | - | chr4.2:55841225-55841244 | None:intergenic | 40.0% |
| ! | ACAACACTGAAAGGTGCATA+TGG | - | chr4.2:55841652-55841671 | None:intergenic | 40.0% |
| ! | CAACACTGAAAGGTGCATAT+GGG | - | chr4.2:55841651-55841670 | None:intergenic | 40.0% |
| ! | GTGCACTAACATCTGTTTTG+AGG | + | chr4.2:55842280-55842299 | MS.gene064217:CDS | 40.0% |
| ! | GTGTAACAGCTGATTGGTTA+TGG | + | chr4.2:55843881-55843900 | MS.gene064217:CDS | 40.0% |
| ! | TGCATAGTTAGCGGTGTTTT+TGG | + | chr4.2:55842073-55842092 | MS.gene064217:CDS | 40.0% |
| ! | TTGTATTGAGTTTTGCCTCG+TGG | - | chr4.2:55841854-55841873 | None:intergenic | 40.0% |
| ! | TTGTTGCAGTCTTTTCTTGC+AGG | + | chr4.2:55842243-55842262 | MS.gene064217:intron | 40.0% |
| !! | ATCTTGGTGTTGTTCATCCT+TGG | + | chr4.2:55843844-55843863 | MS.gene064217:CDS | 40.0% |
| !! | ATGTTGGTTTGCTGGATTCT+TGG | + | chr4.2:55841000-55841019 | MS.gene064217:CDS | 40.0% |
| !! | GAATTTGTGATGGACACTTC+AGG | - | chr4.2:55841302-55841321 | None:intergenic | 40.0% |
| !! | GGGAAAATTTGCTGCAATGT+TGG | + | chr4.2:55840984-55841003 | MS.gene064217:intron | 40.0% |
| !!! | ATCCTTGGAGGTATTTTTGC+AGG | + | chr4.2:55843859-55843878 | MS.gene064217:CDS | 40.0% |
| AAGTACAAATCGGGCACAGA+CGG | - | chr4.2:55843572-55843591 | None:intergenic | 45.0% | |
| AAGTGAGAACACAGACAGTG+AGG | - | chr4.2:55843681-55843700 | None:intergenic | 45.0% | |
| ACAAGAGTAAGCACCCTAGA+GGG | - | chr4.2:55841789-55841808 | None:intergenic | 45.0% | |
| ACAAGGAAGCGGAATCTATC+TGG | + | chr4.2:55841870-55841889 | MS.gene064217:CDS | 45.0% | |
| ATACTTCTCCAAGTGAGGTC+TGG | - | chr4.2:55842681-55842700 | None:intergenic | 45.0% | |
| ATGCTGACCTGCATGAAATC+TGG | - | chr4.2:55842154-55842173 | None:intergenic | 45.0% | |
| CAATCATTCCTCCTTGTGCA+AGG | - | chr4.2:55842111-55842130 | None:intergenic | 45.0% | |
| CACCTGCAAAAATACCTCCA+AGG | - | chr4.2:55843864-55843883 | None:intergenic | 45.0% | |
| CTTGCACAAGGAGGAATGAT+TGG | + | chr4.2:55842109-55842128 | MS.gene064217:CDS | 45.0% | |
| GAAAACACAGTTTAGGCACC+TGG | + | chr4.2:55842924-55842943 | MS.gene064217:CDS | 45.0% | |
| GGGACCTGAACAAAATGCAT+TGG | + | chr4.2:55843816-55843835 | MS.gene064217:intron | 45.0% | |
| GTTCTCACTTCTGCACCTAA+AGG | + | chr4.2:55843691-55843710 | MS.gene064217:CDS | 45.0% | |
| TACAAGAGTAAGCACCCTAG+AGG | - | chr4.2:55841790-55841809 | None:intergenic | 45.0% | |
| TCTAAGGATGGTCTTCGCAA+AGG | + | chr4.2:55842330-55842349 | MS.gene064217:CDS | 45.0% | |
| TCTTTCTGGACTCCATGTTC+AGG | - | chr4.2:55843537-55843556 | None:intergenic | 45.0% | |
| TGTATTACCTGAAGACGTGG+TGG | - | chr4.2:55840878-55840897 | None:intergenic | 45.0% | |
| TTGCAGGTGTAACAGCTGAT+TGG | + | chr4.2:55843875-55843894 | MS.gene064217:CDS | 45.0% | |
| TTTGCTGGATTCTTGGCAAC+GGG | + | chr4.2:55841007-55841026 | MS.gene064217:CDS | 45.0% | |
| ! | GGTGCCTAAACTGTGTTTTC+CGG | - | chr4.2:55842924-55842943 | None:intergenic | 45.0% |
| ! | GTTTGCTGGATTCTTGGCAA+CGG | + | chr4.2:55841006-55841025 | MS.gene064217:CDS | 45.0% |
| !! | TTGCTGCAATGTTGGTTTGC+TGG | + | chr4.2:55840992-55841011 | MS.gene064217:CDS | 45.0% |
| !! | TTGGTGTTGTTCATCCTTGG+AGG | + | chr4.2:55843847-55843866 | MS.gene064217:CDS | 45.0% |
| AACAGATGTTAGTGCACCCG+AGG | - | chr4.2:55842277-55842296 | None:intergenic | 50.0% | |
| ACAGACAGTGAGGTAGCCAT+TGG | - | chr4.2:55843671-55843690 | None:intergenic | 50.0% | |
| ATAGCAGATGCCCTTGCACA+AGG | + | chr4.2:55842097-55842116 | MS.gene064217:CDS | 50.0% | |
| ATGCAGGTCAGCATCACCAA+TGG | + | chr4.2:55842160-55842179 | MS.gene064217:intron | 50.0% | |
| ATTACCTGAAGACGTGGTGG+AGG | - | chr4.2:55840875-55840894 | None:intergenic | 50.0% | |
| CGTTCAAAAGCGGCATCAGA+AGG | + | chr4.2:55842616-55842635 | MS.gene064217:CDS | 50.0% | |
| GGAAGCGGTGATCATCTTTC+TGG | - | chr4.2:55843551-55843570 | None:intergenic | 50.0% | |
| GGAGGGCTTGGAACTTTCAT+TGG | + | chr4.2:55842046-55842065 | MS.gene064217:CDS | 50.0% | |
| GGCAATACTTGCTTACCACG+AGG | + | chr4.2:55841836-55841855 | MS.gene064217:CDS | 50.0% | |
| TCATCTGGAAAAGGAGGGCT+TGG | + | chr4.2:55842034-55842053 | MS.gene064217:CDS | 50.0% | |
| TTGCTGGATTCTTGGCAACG+GGG | + | chr4.2:55841008-55841027 | MS.gene064217:CDS | 50.0% | |
| AAATCGGGCACAGACGGAAG+CGG | - | chr4.2:55843566-55843585 | None:intergenic | 55.0% | |
| GCAACGGGGTTCTCTTCACT+TGG | + | chr4.2:55841022-55841041 | MS.gene064217:CDS | 55.0% | |
| GCAGCTGATCTTGCTGCAGT+TGG | + | chr4.2:55842652-55842671 | MS.gene064217:CDS | 55.0% | |
| GTTGGCATCCAGACCTCACT+TGG | + | chr4.2:55842670-55842689 | MS.gene064217:CDS | 55.0% | |
| TCTTGCAGGTGAAGCAGCCT+CGG | + | chr4.2:55842257-55842276 | MS.gene064217:CDS | 55.0% | |
| CTTGCAGGTGAAGCAGCCTC+GGG | + | chr4.2:55842258-55842277 | MS.gene064217:CDS | 60.0% | |
| GCAGATGCCCTTGCACAAGG+AGG | + | chr4.2:55842100-55842119 | MS.gene064217:CDS | 60.0% | |
| TGAGCCTCCACCACGTCTTC+AGG | + | chr4.2:55840868-55840887 | MS.gene064217:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 55840857 | 55843924 | 55840857 | ID=MS.gene064217 |
| chr4.2 | mRNA | 55840857 | 55843924 | 55840857 | ID=MS.gene064217.t1;Parent=MS.gene064217 |
| chr4.2 | exon | 55840857 | 55840889 | 55840857 | ID=MS.gene064217.t1.exon1;Parent=MS.gene064217.t1 |
| chr4.2 | CDS | 55840857 | 55840889 | 55840857 | ID=cds.MS.gene064217.t1;Parent=MS.gene064217.t1 |
| chr4.2 | exon | 55840985 | 55841089 | 55840985 | ID=MS.gene064217.t1.exon2;Parent=MS.gene064217.t1 |
| chr4.2 | CDS | 55840985 | 55841089 | 55840985 | ID=cds.MS.gene064217.t1;Parent=MS.gene064217.t1 |
| chr4.2 | exon | 55841777 | 55841932 | 55841777 | ID=MS.gene064217.t1.exon3;Parent=MS.gene064217.t1 |
| chr4.2 | CDS | 55841777 | 55841932 | 55841777 | ID=cds.MS.gene064217.t1;Parent=MS.gene064217.t1 |
| chr4.2 | exon | 55842022 | 55842165 | 55842022 | ID=MS.gene064217.t1.exon4;Parent=MS.gene064217.t1 |
| chr4.2 | CDS | 55842022 | 55842165 | 55842022 | ID=cds.MS.gene064217.t1;Parent=MS.gene064217.t1 |
| chr4.2 | exon | 55842252 | 55842357 | 55842252 | ID=MS.gene064217.t1.exon5;Parent=MS.gene064217.t1 |
| chr4.2 | CDS | 55842252 | 55842357 | 55842252 | ID=cds.MS.gene064217.t1;Parent=MS.gene064217.t1 |
| chr4.2 | exon | 55842524 | 55842696 | 55842524 | ID=MS.gene064217.t1.exon6;Parent=MS.gene064217.t1 |
| chr4.2 | CDS | 55842524 | 55842696 | 55842524 | ID=cds.MS.gene064217.t1;Parent=MS.gene064217.t1 |
| chr4.2 | exon | 55842785 | 55842945 | 55842785 | ID=MS.gene064217.t1.exon7;Parent=MS.gene064217.t1 |
| chr4.2 | CDS | 55842785 | 55842945 | 55842785 | ID=cds.MS.gene064217.t1;Parent=MS.gene064217.t1 |
| chr4.2 | exon | 55843462 | 55843720 | 55843462 | ID=MS.gene064217.t1.exon8;Parent=MS.gene064217.t1 |
| chr4.2 | CDS | 55843462 | 55843720 | 55843462 | ID=cds.MS.gene064217.t1;Parent=MS.gene064217.t1 |
| chr4.2 | exon | 55843817 | 55843924 | 55843817 | ID=MS.gene064217.t1.exon9;Parent=MS.gene064217.t1 |
| chr4.2 | CDS | 55843817 | 55843924 | 55843817 | ID=cds.MS.gene064217.t1;Parent=MS.gene064217.t1 |
| Gene Sequence |
| Protein sequence |
