Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064218.t1 | KEH17554.1 | 97.8 | 414 | 9 | 0 | 1 | 414 | 1 | 414 | 1.80E-225 | 791.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064218.t1 | Q9M0Y3 | 70.0 | 410 | 122 | 1 | 3 | 412 | 6 | 414 | 7.5e-164 | 578.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064218.t1 | A0A072TIZ8 | 97.8 | 414 | 9 | 0 | 1 | 414 | 1 | 414 | 1.3e-225 | 791.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene064218 | MS.gene45320 | PPI |
| MS.gene064218 | MS.gene046073 | PPI |
| MS.gene064214 | MS.gene064218 | PPI |
| MS.gene064218 | MS.gene45316 | PPI |
| MS.gene064218 | MS.gene064214 | PPI |
| MS.gene35750 | MS.gene064218 | PPI |
| MS.gene064218 | MS.gene046071 | PPI |
| MS.gene51416 | MS.gene064218 | PPI |
| MS.gene064218 | MS.gene51414 | PPI |
| MS.gene046074 | MS.gene064218 | PPI |
| MS.gene064218 | MS.gene029003 | PPI |
| MS.gene064218 | MS.gene043342 | PPI |
| MS.gene046071 | MS.gene064218 | PPI |
| MS.gene064217 | MS.gene064218 | PPI |
| MS.gene45318 | MS.gene064218 | PPI |
| MS.gene064218 | MS.gene31551 | PPI |
| MS.gene51411 | MS.gene064218 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064218.t1 | MTR_0008s0170 | 97.826 | 414 | 9 | 0 | 1 | 414 | 1 | 414 | 0.0 | 814 |
| MS.gene064218.t1 | MTR_0008s0130 | 80.435 | 414 | 81 | 0 | 1 | 414 | 1 | 414 | 0.0 | 691 |
| MS.gene064218.t1 | MTR_4g050990 | 82.367 | 414 | 73 | 0 | 1 | 414 | 1 | 414 | 0.0 | 681 |
| MS.gene064218.t1 | MTR_2g089520 | 82.367 | 414 | 73 | 0 | 1 | 414 | 1 | 414 | 0.0 | 681 |
| MS.gene064218.t1 | MTR_2g047968 | 79.853 | 407 | 82 | 0 | 4 | 410 | 4 | 410 | 0.0 | 635 |
| MS.gene064218.t1 | MTR_2g011600 | 68.627 | 408 | 126 | 1 | 7 | 412 | 14 | 421 | 0.0 | 565 |
| MS.gene064218.t1 | MTR_2g011580 | 69.474 | 380 | 115 | 1 | 34 | 412 | 1 | 380 | 0.0 | 541 |
| MS.gene064218.t1 | MTR_1g071120 | 75.931 | 349 | 75 | 3 | 11 | 358 | 53 | 393 | 0.0 | 529 |
| MS.gene064218.t1 | MTR_2g011600 | 66.848 | 368 | 120 | 1 | 47 | 412 | 3 | 370 | 2.46e-175 | 494 |
| MS.gene064218.t1 | MTR_8g007285 | 57.851 | 363 | 151 | 1 | 52 | 412 | 2 | 364 | 4.88e-136 | 394 |
| MS.gene064218.t1 | MTR_0003s0470 | 32.274 | 409 | 249 | 8 | 11 | 410 | 26 | 415 | 3.39e-58 | 196 |
| MS.gene064218.t1 | MTR_3g462280 | 30.976 | 410 | 253 | 9 | 11 | 410 | 34 | 423 | 1.34e-48 | 171 |
| MS.gene064218.t1 | MTR_4g114710 | 27.423 | 423 | 264 | 8 | 1 | 410 | 6 | 398 | 2.46e-41 | 150 |
| MS.gene064218.t1 | MTR_2g011540 | 51.111 | 135 | 59 | 1 | 52 | 179 | 2 | 136 | 8.89e-36 | 129 |
| MS.gene064218.t1 | MTR_2g011530 | 69.565 | 92 | 27 | 1 | 278 | 368 | 2 | 93 | 3.89e-35 | 125 |
| MS.gene064218.t1 | MTR_2g011560 | 36.842 | 152 | 40 | 3 | 177 | 323 | 17 | 117 | 5.85e-17 | 77.0 |
| MS.gene064218.t1 | MTR_2g011570 | 64.444 | 45 | 16 | 0 | 137 | 181 | 1 | 45 | 2.59e-12 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064218.t1 | AT4G05120 | 70.000 | 410 | 122 | 1 | 3 | 412 | 6 | 414 | 0.0 | 598 |
| MS.gene064218.t1 | AT4G05120 | 70.000 | 410 | 122 | 1 | 3 | 412 | 6 | 414 | 0.0 | 598 |
| MS.gene064218.t1 | AT4G05110 | 65.610 | 410 | 140 | 1 | 3 | 412 | 6 | 414 | 0.0 | 560 |
| MS.gene064218.t1 | AT4G05110 | 65.610 | 410 | 140 | 1 | 3 | 412 | 6 | 414 | 0.0 | 560 |
| MS.gene064218.t1 | AT4G05110 | 65.366 | 410 | 141 | 1 | 3 | 412 | 6 | 414 | 0.0 | 559 |
| MS.gene064218.t1 | AT4G05140 | 63.659 | 410 | 149 | 0 | 3 | 412 | 6 | 415 | 0.0 | 551 |
| MS.gene064218.t1 | AT4G05130 | 61.893 | 412 | 156 | 1 | 3 | 414 | 6 | 416 | 0.0 | 540 |
| MS.gene064218.t1 | AT3G09990 | 63.457 | 405 | 147 | 1 | 11 | 414 | 13 | 417 | 0.0 | 540 |
| MS.gene064218.t1 | AT1G61630 | 60.732 | 410 | 160 | 1 | 4 | 412 | 5 | 414 | 1.91e-179 | 506 |
| MS.gene064218.t1 | AT1G70330 | 32.067 | 421 | 253 | 9 | 2 | 410 | 51 | 450 | 7.43e-56 | 191 |
| MS.gene064218.t1 | AT1G02630 | 28.750 | 400 | 250 | 6 | 16 | 410 | 20 | 389 | 1.38e-46 | 164 |
| MS.gene064218.t1 | AT1G02630 | 29.798 | 198 | 137 | 2 | 16 | 212 | 20 | 216 | 8.80e-25 | 104 |
Find 88 sgRNAs with CRISPR-Local
Find 185 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCACCTTATAGCCTTTC+GGG | 0.166232 | 4.2:-55828916 | None:intergenic |
| CTTGATTGGTTGTGGTTAAT+AGG | 0.208925 | 4.2:+55829101 | MS.gene064218:CDS |
| ACAAGGAAGCGGATTCTATT+TGG | 0.224058 | 4.2:+55826819 | MS.gene064218:CDS |
| TACTTCACAATTGGTAATTT+AGG | 0.225152 | 4.2:-55827741 | None:intergenic |
| TTACTATGTTTATTTATTTC+CGG | 0.229116 | 4.2:+55826355 | MS.gene064218:CDS |
| TTCTTCACCTTATAGCCTTT+CGG | 0.245719 | 4.2:-55828917 | None:intergenic |
| GATAATGTTGACATCTTTCT+TGG | 0.252333 | 4.2:+55828850 | MS.gene064218:CDS |
| ATCTTGGTATTGTTTCTTCT+TGG | 0.254429 | 4.2:+55829056 | MS.gene064218:CDS |
| AGGAAATAAGCAATTGTTAA+TGG | 0.274561 | 4.2:+55827970 | MS.gene064218:CDS |
| ATGCTGACCTGAACAAATTC+TGG | 0.275263 | 4.2:-55827108 | None:intergenic |
| GGAGGGATTGGAACATTCTT+TGG | 0.278469 | 4.2:+55827003 | MS.gene064218:CDS |
| CTCAAATTGTCTTAATTCTT+CGG | 0.301282 | 4.2:-55827942 | None:intergenic |
| ATAGTGGTTTGTTGGCTTCT+TGG | 0.322214 | 4.2:+55826287 | MS.gene064218:CDS |
| CTTGGCGGTGCTGCAGCATC+AGG | 0.325226 | 4.2:+55827383 | MS.gene064218:CDS |
| TAATTGCTATGTATAATGTA+TGG | 0.328838 | 4.2:+55828687 | MS.gene064218:CDS |
| GTTTGTTGGCTTCTTGGAAA+TGG | 0.335314 | 4.2:+55826293 | MS.gene064218:CDS |
| TGCATAGTTAGTGGTGCATT+TGG | 0.338224 | 4.2:+55827030 | MS.gene064218:CDS |
| TTCTGCCCCGAAAGGCTATA+AGG | 0.352392 | 4.2:+55828910 | MS.gene064218:CDS |
| TTGGTATTGTTTCTTCTTGG+AGG | 0.389863 | 4.2:+55829059 | MS.gene064218:CDS |
| ATAATGTTGACATCTTTCTT+GGG | 0.400944 | 4.2:+55828851 | MS.gene064218:CDS |
| TCAGCTGACCTTGCTGCAGC+TGG | 0.400973 | 4.2:+55827804 | MS.gene064218:CDS |
| AAATGCATTGGGAAATATCT+TGG | 0.414446 | 4.2:+55829040 | MS.gene064218:CDS |
| TTTGTTGGCTTCTTGGAAAT+GGG | 0.415388 | 4.2:+55826294 | MS.gene064218:CDS |
| ATACTGCAATAGTGGTTTGT+TGG | 0.416477 | 4.2:+55826279 | MS.gene064218:CDS |
| ACTGATCAAAATCTTGAAGT+TGG | 0.417735 | 4.2:+55828733 | MS.gene064218:CDS |
| GTACTTCTCGTAGTGAAGTC+TGG | 0.421441 | 4.2:-55827830 | None:intergenic |
| CATGAATCCAGAATTTGTTC+AGG | 0.422496 | 4.2:+55827101 | MS.gene064218:CDS |
| TTGCAGGGGTAACACTTGAT+TGG | 0.425898 | 4.2:+55829087 | MS.gene064218:CDS |
| GAACGGTAGTACTTCACAAT+TGG | 0.426412 | 4.2:-55827750 | None:intergenic |
| TTATTGTTGTAGTCTTTCCT+TGG | 0.427988 | 4.2:+55827365 | MS.gene064218:intron |
| GTGCTCTAACATCGGCTTTG+AGG | 0.429741 | 4.2:+55827405 | MS.gene064218:CDS |
| TACAATTAAAACAGCCAAAA+CGG | 0.430063 | 4.2:-55826862 | None:intergenic |
| AAGGTCAGCTGAAACAGTTT+TGG | 0.431717 | 4.2:-55827793 | None:intergenic |
| TTTGGTATATGCATAGTTAG+TGG | 0.432167 | 4.2:+55827021 | MS.gene064218:CDS |
| CATGCACAAGGAGGAATGAT+TGG | 0.442301 | 4.2:+55827066 | MS.gene064218:CDS |
| AAGCTCAAACAAGGTTGATA+AGG | 0.443767 | 4.2:-55827688 | None:intergenic |
| TAGTTGGATTTAGCAACATC+TGG | 0.449427 | 4.2:+55826976 | MS.gene064218:intron |
| TATAATGTATGGGATCTTAT+CGG | 0.459552 | 4.2:+55828698 | MS.gene064218:CDS |
| GGGTAACACTTGATTGGTTG+TGG | 0.462903 | 4.2:+55829093 | MS.gene064218:CDS |
| TTGTTGTAGTCTTTCCTTGG+CGG | 0.468717 | 4.2:+55827368 | MS.gene064218:intron |
| ACATCTGGTAAAGGAGGGAT+TGG | 0.484610 | 4.2:+55826991 | MS.gene064218:CDS |
| GATACCGGATTACACAGTTT+AGG | 0.487502 | 4.2:+55828070 | MS.gene064218:CDS |
| AATTGCTATGTATAATGTAT+GGG | 0.488467 | 4.2:+55828688 | MS.gene064218:CDS |
| GGGACCTGAACAAAATGCAT+TGG | 0.488651 | 4.2:+55829028 | MS.gene064218:intron |
| CTGACATTGTCTATATTCCC+TGG | 0.495635 | 4.2:+55828034 | MS.gene064218:CDS |
| GGGAAAATATACTGCAATAG+TGG | 0.497358 | 4.2:+55826271 | MS.gene064218:intron |
| AGCAATTCTTACTTACTATG+AGG | 0.505159 | 4.2:+55826785 | MS.gene064218:CDS |
| GGACCTGAACAAAATGCATT+GGG | 0.505661 | 4.2:+55829029 | MS.gene064218:CDS |
| GCTAGTGTTCCAACTGCAAA+TGG | 0.506628 | 4.2:-55826765 | None:intergenic |
| AGCAATATTTGAAAATTCAA+AGG | 0.519851 | 4.2:+55827439 | MS.gene064218:CDS |
| TGCAGAAATATCATCCCTCT+AGG | 0.522851 | 4.2:+55826721 | MS.gene064218:intron |
| CGTTCAAAAGCCGCATCCGA+AGG | 0.529953 | 4.2:+55827768 | MS.gene064218:CDS |
| GATTTAGCAACATCTGGTAA+AGG | 0.531613 | 4.2:+55826982 | MS.gene064218:CDS |
| TGTGCCTAAACTGTGTAATC+CGG | 0.542014 | 4.2:-55828074 | None:intergenic |
| CAAAGTATGGTACTCAAGGT+TGG | 0.542078 | 4.2:+55828825 | MS.gene064218:CDS |
| TGAGCCTCCACCACGTATTG+AGG | 0.544627 | 4.2:+55826173 | MS.gene064218:CDS |
| ACAGACAGCGAGGTAGCCAT+TGG | 0.547272 | 4.2:-55828879 | None:intergenic |
| ATTCTGGATTCATGTATGAC+AGG | 0.549368 | 4.2:-55827092 | None:intergenic |
| CTGATGCTGCAGCACCGCCA+AGG | 0.552472 | 4.2:-55827382 | None:intergenic |
| GTATATCAGCCATTTGCAGT+TGG | 0.555669 | 4.2:+55826756 | MS.gene064218:CDS |
| AAATTGTCTTAATTCTTCGG+TGG | 0.562541 | 4.2:-55827939 | None:intergenic |
| TCTTTCTTGGGGATATCCAA+TGG | 0.562937 | 4.2:+55828863 | MS.gene064218:CDS |
| TTTGCAGTGAAATAAAATGC+TGG | 0.563621 | 4.2:-55828806 | None:intergenic |
| TAATGTTGACATCTTTCTTG+GGG | 0.567874 | 4.2:+55828852 | MS.gene064218:CDS |
| ACTGCAAAGTATGGTACTCA+AGG | 0.567878 | 4.2:+55828821 | MS.gene064218:CDS |
| TTAAGACAATTTGAGCGCAA+AGG | 0.573253 | 4.2:+55827950 | MS.gene064218:CDS |
| AGCATCAGGTGCTCTAACAT+CGG | 0.577110 | 4.2:+55827397 | MS.gene064218:CDS |
| TTAGCAACATCTGGTAAAGG+AGG | 0.580672 | 4.2:+55826985 | MS.gene064218:CDS |
| TACAAGAGTAAGCACCCTAG+AGG | 0.583761 | 4.2:-55826736 | None:intergenic |
| TGGTTGTGGTTAATAGGTAA+AGG | 0.585880 | 4.2:+55829107 | MS.gene064218:CDS |
| ATTACCTCAATACGTGGTGG+AGG | 0.589177 | 4.2:-55826177 | None:intergenic |
| GTTCTCACTTCTGCCCCGAA+AGG | 0.606657 | 4.2:+55828902 | MS.gene064218:CDS |
| GTTCAAAAGCCGCATCCGAA+GGG | 0.608277 | 4.2:+55827769 | MS.gene064218:CDS |
| CTTCACCTTATAGCCTTTCG+GGG | 0.611942 | 4.2:-55828915 | None:intergenic |
| TAGCAACATCTGGTAAAGGA+GGG | 0.612233 | 4.2:+55826986 | MS.gene064218:CDS |
| ATATTTGAAAATTCAAAGGA+CGG | 0.612457 | 4.2:+55827443 | MS.gene064218:CDS |
| AACACAAAGAAGCTCAAACA+AGG | 0.615784 | 4.2:-55827697 | None:intergenic |
| TGTGGTTAATAGGTAAAGGA+TGG | 0.618128 | 4.2:+55829111 | MS.gene064218:CDS |
| TTAGCAGATGCTCATGCACA+AGG | 0.620251 | 4.2:+55827054 | MS.gene064218:CDS |
| GCAGAAATATCATCCCTCTA+GGG | 0.623345 | 4.2:+55826722 | MS.gene064218:intron |
| ACAAGAGTAAGCACCCTAGA+GGG | 0.631895 | 4.2:-55826735 | None:intergenic |
| TCAAAGGACGGACTTCGCAA+AGG | 0.636673 | 4.2:+55827455 | MS.gene064218:CDS |
| GATTACACAGTTTAGGCACA+TGG | 0.648704 | 4.2:+55828077 | MS.gene064218:CDS |
| TCTGGATTCCAGCTGCAGCA+AGG | 0.649624 | 4.2:-55827812 | None:intergenic |
| TATATTACCTCAATACGTGG+TGG | 0.675337 | 4.2:-55826180 | None:intergenic |
| AAGTGAGAACACAGACAGCG+AGG | 0.688797 | 4.2:-55828889 | None:intergenic |
| GCAGATGCTCATGCACAAGG+AGG | 0.707799 | 4.2:+55827057 | MS.gene064218:CDS |
| ATATATATTACCTCAATACG+TGG | 0.719503 | 4.2:-55826183 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGTTAACAAAAAAATTAAC+AGG | - | chr4.2:55826891-55826910 | None:intergenic | 15.0% |
| !! | TCATTAGTTATTACTTATTT+CGG | - | chr4.2:55828305-55828324 | None:intergenic | 15.0% |
| !! | TTACTATGTTTATTTATTTC+CGG | + | chr4.2:55826355-55826374 | MS.gene064218:CDS | 15.0% |
| !!! | AAATTGATTTCTTTTAGTAT+CGG | + | chr4.2:55827579-55827598 | MS.gene064218:intron | 15.0% |
| !!! | AATGATATTTTAAGAAGTAA+TGG | + | chr4.2:55828544-55828563 | MS.gene064218:intron | 15.0% |
| !!! | TGTATGTTTTTACTTTTTTA+GGG | + | chr4.2:55829008-55829027 | MS.gene064218:intron | 15.0% |
| !!! | TTGTATGTTTTTACTTTTTT+AGG | + | chr4.2:55829007-55829026 | MS.gene064218:intron | 15.0% |
| !! | AAATTGATATTTGAATGTGT+TGG | - | chr4.2:55828422-55828441 | None:intergenic | 20.0% |
| !! | AATTGATATTTGAATGTGTT+GGG | - | chr4.2:55828421-55828440 | None:intergenic | 20.0% |
| !! | AATTGCTATGTATAATGTAT+GGG | + | chr4.2:55828688-55828707 | MS.gene064218:CDS | 20.0% |
| !! | AGCAATATTTGAAAATTCAA+AGG | + | chr4.2:55827439-55827458 | MS.gene064218:CDS | 20.0% |
| !! | ATATTTGAAAATTCAAAGGA+CGG | + | chr4.2:55827443-55827462 | MS.gene064218:CDS | 20.0% |
| !! | CAAAAATGAAAAACATATCT+CGG | + | chr4.2:55828221-55828240 | MS.gene064218:intron | 20.0% |
| !! | CAAAATAAATGATGTGTAAT+AGG | - | chr4.2:55826479-55826498 | None:intergenic | 20.0% |
| !! | TAATTGCTATGTATAATGTA+TGG | + | chr4.2:55828687-55828706 | MS.gene064218:CDS | 20.0% |
| !! | TATAACAGATATAACAAAAG+CGG | - | chr4.2:55826574-55826593 | None:intergenic | 20.0% |
| !! | TATTATCAAATACACATTTG+AGG | + | chr4.2:55828278-55828297 | MS.gene064218:intron | 20.0% |
| !! | TTGATATTTCCATTTATTAC+AGG | + | chr4.2:55828651-55828670 | MS.gene064218:intron | 20.0% |
| !!! | ACATCATTTATTTTGTAATC+TGG | + | chr4.2:55826484-55826503 | MS.gene064218:intron | 20.0% |
| !!! | TAAATTATTTTGCATTTGCA+GGG | + | chr4.2:55826251-55826270 | MS.gene064218:intron | 20.0% |
| !!! | TTAAATTATTTTGCATTTGC+AGG | + | chr4.2:55826250-55826269 | MS.gene064218:intron | 20.0% |
| ! | AATAGCGAAAGATAAATTTG+AGG | + | chr4.2:55828349-55828368 | MS.gene064218:intron | 25.0% |
| ! | ACAATGCTAACTTTGATATT+CGG | + | chr4.2:55827168-55827187 | MS.gene064218:intron | 25.0% |
| ! | AGGAAATAAGCAATTGTTAA+TGG | + | chr4.2:55827970-55827989 | MS.gene064218:CDS | 25.0% |
| ! | ATAATGTTGACATCTTTCTT+GGG | + | chr4.2:55828851-55828870 | MS.gene064218:CDS | 25.0% |
| ! | ATATATATTACCTCAATACG+TGG | - | chr4.2:55826186-55826205 | None:intergenic | 25.0% |
| ! | ATATCATTCCAATATCTATC+TGG | - | chr4.2:55828532-55828551 | None:intergenic | 25.0% |
| ! | CTCAAATTGTCTTAATTCTT+CGG | - | chr4.2:55827945-55827964 | None:intergenic | 25.0% |
| ! | TACAATTAAAACAGCCAAAA+CGG | - | chr4.2:55826865-55826884 | None:intergenic | 25.0% |
| ! | TATAATGTATGGGATCTTAT+CGG | + | chr4.2:55828698-55828717 | MS.gene064218:CDS | 25.0% |
| ! | TATCTTCTGATAAAAATCCA+GGG | - | chr4.2:55828054-55828073 | None:intergenic | 25.0% |
| ! | TGGATATCTTTATGAATTGT+AGG | - | chr4.2:55827607-55827626 | None:intergenic | 25.0% |
| ! | TGTATGTTCAATTTCAAAAC+TGG | + | chr4.2:55828628-55828647 | MS.gene064218:intron | 25.0% |
| ! | TTATATAACGATTGCAATTG+CGG | + | chr4.2:55827257-55827276 | MS.gene064218:intron | 25.0% |
| ! | TTATCTTTCGCTATTCAATT+TGG | - | chr4.2:55828344-55828363 | None:intergenic | 25.0% |
| !! | ACATATGCAACTCTTTTTAA+AGG | + | chr4.2:55827340-55827359 | MS.gene064218:intron | 25.0% |
| !! | CTTTTCTTTTCAATTTCTCA+CGG | + | chr4.2:55827858-55827877 | MS.gene064218:intron | 25.0% |
| !! | TACTTCACAATTGGTAATTT+AGG | - | chr4.2:55827744-55827763 | None:intergenic | 25.0% |
| !!! | TTTTATTTCACTGCAAAGTA+TGG | + | chr4.2:55828812-55828831 | MS.gene064218:CDS | 25.0% |
| AAAACTGAATCTCAACAGTA+AGG | - | chr4.2:55827889-55827908 | None:intergenic | 30.0% | |
| AAAAGAGTTGCATATGTTGA+AGG | - | chr4.2:55827337-55827356 | None:intergenic | 30.0% | |
| AAATGCATTGGGAAATATCT+TGG | + | chr4.2:55829040-55829059 | MS.gene064218:CDS | 30.0% | |
| AAATTGTCTTAATTCTTCGG+TGG | - | chr4.2:55827942-55827961 | None:intergenic | 30.0% | |
| AACCAAAAACAAAGGATGAA+AGG | - | chr4.2:55828121-55828140 | None:intergenic | 30.0% | |
| AAGAAACTAGAATACTTCAG+AGG | + | chr4.2:55828946-55828965 | MS.gene064218:intron | 30.0% | |
| ACTGATCAAAATCTTGAAGT+TGG | + | chr4.2:55828733-55828752 | MS.gene064218:CDS | 30.0% | |
| AGCAATTCTTACTTACTATG+AGG | + | chr4.2:55826785-55826804 | MS.gene064218:CDS | 30.0% | |
| ATATCTCACCAGATAGATAT+TGG | + | chr4.2:55828521-55828540 | MS.gene064218:intron | 30.0% | |
| ATGAGGCAAAAATCAATACA+AGG | + | chr4.2:55826802-55826821 | MS.gene064218:CDS | 30.0% | |
| ATTCCTTCAAATTGTGCATT+TGG | + | chr4.2:55826913-55826932 | MS.gene064218:intron | 30.0% | |
| CAAAAATCAATACAAGGAAG+CGG | + | chr4.2:55826808-55826827 | MS.gene064218:CDS | 30.0% | |
| CAATGCTAACTTTGATATTC+GGG | + | chr4.2:55827169-55827188 | MS.gene064218:intron | 30.0% | |
| CCAAAAAGAACCAAAAACAA+AGG | - | chr4.2:55828129-55828148 | None:intergenic | 30.0% | |
| GATAATGTTGACATCTTTCT+TGG | + | chr4.2:55828850-55828869 | MS.gene064218:CDS | 30.0% | |
| GTATCTTCTGATAAAAATCC+AGG | - | chr4.2:55828055-55828074 | None:intergenic | 30.0% | |
| TAACCAGAGTGAATAGTTAA+CGG | - | chr4.2:55826421-55826440 | None:intergenic | 30.0% | |
| TAATGTTGACATCTTTCTTG+GGG | + | chr4.2:55828852-55828871 | MS.gene064218:CDS | 30.0% | |
| TCAGAAAGTAGATACATTAC+CGG | - | chr4.2:55826377-55826396 | None:intergenic | 30.0% | |
| TTATTGTTGTAGTCTTTCCT+TGG | + | chr4.2:55827365-55827384 | MS.gene064218:intron | 30.0% | |
| TTCCTTCAAATTGTGCATTT+GGG | + | chr4.2:55826914-55826933 | MS.gene064218:intron | 30.0% | |
| TTTCAATCCCTAAATGTATG+TGG | + | chr4.2:55828173-55828192 | MS.gene064218:intron | 30.0% | |
| TTTGCAGTGAAATAAAATGC+TGG | - | chr4.2:55828809-55828828 | None:intergenic | 30.0% | |
| TTTGGTATATGCATAGTTAG+TGG | + | chr4.2:55827021-55827040 | MS.gene064218:CDS | 30.0% | |
| ! | ATCTTGGTATTGTTTCTTCT+TGG | + | chr4.2:55829056-55829075 | MS.gene064218:CDS | 30.0% |
| ! | GATGATATTTCTGCACAAAT+AGG | - | chr4.2:55826716-55826735 | None:intergenic | 30.0% |
| ! | GGATTTTTATCAGAAGATAC+CGG | + | chr4.2:55828055-55828074 | MS.gene064218:CDS | 30.0% |
| ! | TATTTCTGCACAAATAGGAA+AGG | - | chr4.2:55826711-55826730 | None:intergenic | 30.0% |
| !! | AAAACAACAAAAGTGGGTTA+AGG | + | chr4.2:55828593-55828612 | MS.gene064218:intron | 30.0% |
| !! | AACTTCAAGATTTTGATCAG+TGG | - | chr4.2:55828734-55828753 | None:intergenic | 30.0% |
| !! | ACTATTTTTCTTAGCCGTTT+TGG | + | chr4.2:55826848-55826867 | MS.gene064218:CDS | 30.0% |
| !! | GAAGTATTCTAGTTTCTTGA+AGG | - | chr4.2:55828944-55828963 | None:intergenic | 30.0% |
| !! | GACTAATTTGTGTGTTTTTC+AGG | + | chr4.2:55827916-55827935 | MS.gene064218:intron | 30.0% |
| !! | GCATAAAATTGTTTCTGCAT+GGG | - | chr4.2:55827214-55827233 | None:intergenic | 30.0% |
| !!! | ATCCTTTCATCCTTTGTTTT+TGG | + | chr4.2:55828116-55828135 | MS.gene064218:intron | 30.0% |
| !!! | CCTTTGTTTTTGGTTCTTTT+TGG | + | chr4.2:55828126-55828145 | MS.gene064218:intron | 30.0% |
| !!! | TATAAAAGTTTTAGACGCCT+CGG | - | chr4.2:55827242-55827261 | None:intergenic | 30.0% |
| AACACAAAGAAGCTCAAACA+AGG | - | chr4.2:55827700-55827719 | None:intergenic | 35.0% | |
| AACCCAAATGCACAATTTGA+AGG | - | chr4.2:55826919-55826938 | None:intergenic | 35.0% | |
| AGTATCCACCACATACATTT+AGG | - | chr4.2:55828184-55828203 | None:intergenic | 35.0% | |
| ATCCATGATCATGATTCATG+TGG | + | chr4.2:55827622-55827641 | MS.gene064218:intron | 35.0% | |
| ATTCTGGATTCATGTATGAC+AGG | - | chr4.2:55827095-55827114 | None:intergenic | 35.0% | |
| CTATCTGGTGAGATATGATT+AGG | - | chr4.2:55828517-55828536 | None:intergenic | 35.0% | |
| CTGATGTGTAGATGTTTGTT+AGG | + | chr4.2:55826530-55826549 | MS.gene064218:intron | 35.0% | |
| CTGCTCAAAACAACAAAAGT+GGG | + | chr4.2:55828587-55828606 | MS.gene064218:intron | 35.0% | |
| GATTTAGCAACATCTGGTAA+AGG | + | chr4.2:55826982-55827001 | MS.gene064218:CDS | 35.0% | |
| GGGAAAATATACTGCAATAG+TGG | + | chr4.2:55826271-55826290 | MS.gene064218:intron | 35.0% | |
| GTATCCACCACATACATTTA+GGG | - | chr4.2:55828183-55828202 | None:intergenic | 35.0% | |
| TACCACATGAATCATGATCA+TGG | - | chr4.2:55827627-55827646 | None:intergenic | 35.0% | |
| TAGTTGGATTTAGCAACATC+TGG | + | chr4.2:55826976-55826995 | MS.gene064218:intron | 35.0% | |
| TATATTACCTCAATACGTGG+TGG | - | chr4.2:55826183-55826202 | None:intergenic | 35.0% | |
| TATCCGTTAACTATTCACTC+TGG | + | chr4.2:55826415-55826434 | MS.gene064218:intron | 35.0% | |
| TCTGCTCAAAACAACAAAAG+TGG | + | chr4.2:55828586-55828605 | MS.gene064218:intron | 35.0% | |
| TGGTTGTGGTTAATAGGTAA+AGG | + | chr4.2:55829107-55829126 | MS.gene064218:CDS | 35.0% | |
| TGTGGTTAATAGGTAAAGGA+TGG | + | chr4.2:55829111-55829130 | MS.gene064218:CDS | 35.0% | |
| TTAAGACAATTTGAGCGCAA+AGG | + | chr4.2:55827950-55827969 | MS.gene064218:CDS | 35.0% | |
| TTCTTCACCTTATAGCCTTT+CGG | - | chr4.2:55828920-55828939 | None:intergenic | 35.0% | |
| ! | AAGAGCGTACCTGTAATAAA+TGG | - | chr4.2:55828663-55828682 | None:intergenic | 35.0% |
| ! | ATACTGCAATAGTGGTTTGT+TGG | + | chr4.2:55826279-55826298 | MS.gene064218:CDS | 35.0% |
| ! | CATGAATCCAGAATTTGTTC+AGG | + | chr4.2:55827101-55827120 | MS.gene064218:CDS | 35.0% |
| ! | CTTGATTGGTTGTGGTTAAT+AGG | + | chr4.2:55829101-55829120 | MS.gene064218:CDS | 35.0% |
| ! | TTGGTATTGTTTCTTCTTGG+AGG | + | chr4.2:55829059-55829078 | MS.gene064218:CDS | 35.0% |
| ! | TTTCCCAATGCATTTTGTTC+AGG | - | chr4.2:55829035-55829054 | None:intergenic | 35.0% |
| !! | AAGCTCAAACAAGGTTGATA+AGG | - | chr4.2:55827691-55827710 | None:intergenic | 35.0% |
| !! | AATGTATGTGGTGGATACTA+TGG | + | chr4.2:55828185-55828204 | MS.gene064218:intron | 35.0% |
| !! | GGCATAAAATTGTTTCTGCA+TGG | - | chr4.2:55827215-55827234 | None:intergenic | 35.0% |
| !! | TTTGTTGGCTTCTTGGAAAT+GGG | + | chr4.2:55826294-55826313 | MS.gene064218:CDS | 35.0% |
| !!! | TTCTTGGAGGTATTTTTGCA+GGG | + | chr4.2:55829072-55829091 | MS.gene064218:CDS | 35.0% |
| !!! | TTGTAATCTGGTTTTATGCC+CGG | + | chr4.2:55826496-55826515 | MS.gene064218:intron | 35.0% |
| AAGAACTGCATGAATCAGAG+AGG | - | chr4.2:55827661-55827680 | None:intergenic | 40.0% | |
| ACCTATTTACGTGTCGTAGT+TGG | + | chr4.2:55826960-55826979 | MS.gene064218:intron | 40.0% | |
| ACTGCAAAGTATGGTACTCA+AGG | + | chr4.2:55828821-55828840 | MS.gene064218:CDS | 40.0% | |
| ATGCTGACCTGAACAAATTC+TGG | - | chr4.2:55827111-55827130 | None:intergenic | 40.0% | |
| CAAAGTATGGTACTCAAGGT+TGG | + | chr4.2:55828825-55828844 | MS.gene064218:CDS | 40.0% | |
| CAATCCCTAAATGTATGTGG+TGG | + | chr4.2:55828176-55828195 | MS.gene064218:intron | 40.0% | |
| CTGACATTGTCTATATTCCC+TGG | + | chr4.2:55828034-55828053 | MS.gene064218:CDS | 40.0% | |
| GAACGGTAGTACTTCACAAT+TGG | - | chr4.2:55827753-55827772 | None:intergenic | 40.0% | |
| GATACCGGATTACACAGTTT+AGG | + | chr4.2:55828070-55828089 | MS.gene064218:CDS | 40.0% | |
| GATTACACAGTTTAGGCACA+TGG | + | chr4.2:55828077-55828096 | MS.gene064218:CDS | 40.0% | |
| GCAGAAATATCATCCCTCTA+GGG | + | chr4.2:55826722-55826741 | MS.gene064218:intron | 40.0% | |
| GGACCTGAACAAAATGCATT+GGG | + | chr4.2:55829029-55829048 | MS.gene064218:CDS | 40.0% | |
| GTATATCAGCCATTTGCAGT+TGG | + | chr4.2:55826756-55826775 | MS.gene064218:CDS | 40.0% | |
| TAGCAACATCTGGTAAAGGA+GGG | + | chr4.2:55826986-55827005 | MS.gene064218:CDS | 40.0% | |
| TCCAACTACGACACGTAAAT+AGG | - | chr4.2:55826964-55826983 | None:intergenic | 40.0% | |
| TCTTCACCTTATAGCCTTTC+GGG | - | chr4.2:55828919-55828938 | None:intergenic | 40.0% | |
| TCTTTCTTGGGGATATCCAA+TGG | + | chr4.2:55828863-55828882 | MS.gene064218:CDS | 40.0% | |
| TGCAGAAATATCATCCCTCT+AGG | + | chr4.2:55826721-55826740 | MS.gene064218:intron | 40.0% | |
| TGCATAGTTAGTGGTGCATT+TGG | + | chr4.2:55827030-55827049 | MS.gene064218:CDS | 40.0% | |
| TGTGCCTAAACTGTGTAATC+CGG | - | chr4.2:55828077-55828096 | None:intergenic | 40.0% | |
| TTAGCAACATCTGGTAAAGG+AGG | + | chr4.2:55826985-55827004 | MS.gene064218:CDS | 40.0% | |
| TTGTTGTAGTCTTTCCTTGG+CGG | + | chr4.2:55827368-55827387 | MS.gene064218:intron | 40.0% | |
| ! | AAGGTCAGCTGAAACAGTTT+TGG | - | chr4.2:55827796-55827815 | None:intergenic | 40.0% |
| ! | ACAAGGAAGCGGATTCTATT+TGG | + | chr4.2:55826819-55826838 | MS.gene064218:CDS | 40.0% |
| ! | ACAATTTTATGCCTTTGCCG+AGG | + | chr4.2:55827222-55827241 | MS.gene064218:intron | 40.0% |
| ! | GAAATGGGTGTCTTTTCTCT+TGG | + | chr4.2:55826309-55826328 | MS.gene064218:CDS | 40.0% |
| ! | TGAAAGTACAAAGAGCTGAG+AGG | - | chr4.2:55826643-55826662 | None:intergenic | 40.0% |
| !! | ATAGTGGTTTGTTGGCTTCT+TGG | + | chr4.2:55826287-55826306 | MS.gene064218:CDS | 40.0% |
| !! | GTTTGTTGGCTTCTTGGAAA+TGG | + | chr4.2:55826293-55826312 | MS.gene064218:CDS | 40.0% |
| !!! | CTTCTTGGAGGTATTTTTGC+AGG | + | chr4.2:55829071-55829090 | MS.gene064218:CDS | 40.0% |
| !!! | TCTTGGAGGTATTTTTGCAG+GGG | + | chr4.2:55829073-55829092 | MS.gene064218:CDS | 40.0% |
| !!! | TGAAACAGTTTTGGACCCTT+CGG | - | chr4.2:55827787-55827806 | None:intergenic | 40.0% |
| ACAAGAGTAAGCACCCTAGA+GGG | - | chr4.2:55826738-55826757 | None:intergenic | 45.0% | |
| ACATCTGGTAAAGGAGGGAT+TGG | + | chr4.2:55826991-55827010 | MS.gene064218:CDS | 45.0% | |
| ACCAAATGCTCGGCTCAAAA+AGG | - | chr4.2:55826601-55826620 | None:intergenic | 45.0% | |
| AGCATCAGGTGCTCTAACAT+CGG | + | chr4.2:55827397-55827416 | MS.gene064218:CDS | 45.0% | |
| ATTACCTCAATACGTGGTGG+AGG | - | chr4.2:55826180-55826199 | None:intergenic | 45.0% | |
| CATGCACAAGGAGGAATGAT+TGG | + | chr4.2:55827066-55827085 | MS.gene064218:CDS | 45.0% | |
| CCAAATGCTCGGCTCAAAAA+GGG | - | chr4.2:55826600-55826619 | None:intergenic | 45.0% | |
| CTGGTTAGCGTTAATGTCTC+TGG | + | chr4.2:55826434-55826453 | MS.gene064218:intron | 45.0% | |
| CTTCACCTTATAGCCTTTCG+GGG | - | chr4.2:55828918-55828937 | None:intergenic | 45.0% | |
| GCTAGTGTTCCAACTGCAAA+TGG | - | chr4.2:55826768-55826787 | None:intergenic | 45.0% | |
| GGAGGGATTGGAACATTCTT+TGG | + | chr4.2:55827003-55827022 | MS.gene064218:CDS | 45.0% | |
| GGGACCTGAACAAAATGCAT+TGG | + | chr4.2:55829028-55829047 | MS.gene064218:intron | 45.0% | |
| GTACTTCTCGTAGTGAAGTC+TGG | - | chr4.2:55827833-55827852 | None:intergenic | 45.0% | |
| GTTCAGGTCAGCATCATCAA+TGG | + | chr4.2:55827117-55827136 | MS.gene064218:intron | 45.0% | |
| TACAAGAGTAAGCACCCTAG+AGG | - | chr4.2:55826739-55826758 | None:intergenic | 45.0% | |
| TTAGCAGATGCTCATGCACA+AGG | + | chr4.2:55827054-55827073 | MS.gene064218:CDS | 45.0% | |
| TTGCAGGGGTAACACTTGAT+TGG | + | chr4.2:55829087-55829106 | MS.gene064218:CDS | 45.0% | |
| ! | GGGTAACACTTGATTGGTTG+TGG | + | chr4.2:55829093-55829112 | MS.gene064218:CDS | 45.0% |
| !!! | TTATTTTATATATTTTTCTT+TGG | + | chr4.2:55826665-55826684 | MS.gene064218:intron | 5.0% |
| AAGTGAGAACACAGACAGCG+AGG | - | chr4.2:55828892-55828911 | None:intergenic | 50.0% | |
| ACATCAGACAACCTAACGCC+GGG | - | chr4.2:55826517-55826536 | None:intergenic | 50.0% | |
| CACATCAGACAACCTAACGC+CGG | - | chr4.2:55826518-55826537 | None:intergenic | 50.0% | |
| CAGCACTCTGATGCTTAGCA+TGG | + | chr4.2:55827490-55827509 | MS.gene064218:intron | 50.0% | |
| GTTCAAAAGCCGCATCCGAA+GGG | + | chr4.2:55827769-55827788 | MS.gene064218:CDS | 50.0% | |
| TGACCCAGCAACCAAATGCT+CGG | - | chr4.2:55826611-55826630 | None:intergenic | 50.0% | |
| TTCTGCCCCGAAAGGCTATA+AGG | + | chr4.2:55828910-55828929 | MS.gene064218:CDS | 50.0% | |
| ! | CTTCGGATGCGGCTTTTGAA+CGG | - | chr4.2:55827770-55827789 | None:intergenic | 50.0% |
| ! | TCAAAGGACGGACTTCGCAA+AGG | + | chr4.2:55827455-55827474 | MS.gene064218:CDS | 50.0% |
| !! | CCCTTTTTGAGCCGAGCATT+TGG | + | chr4.2:55826597-55826616 | MS.gene064218:intron | 50.0% |
| !! | GTGCTCTAACATCGGCTTTG+AGG | + | chr4.2:55827405-55827424 | MS.gene064218:CDS | 50.0% |
| !!! | AGTTTTAGACGCCTCGGCAA+AGG | - | chr4.2:55827236-55827255 | None:intergenic | 50.0% |
| !!! | AGTTTTGGACCCTTCGGATG+CGG | - | chr4.2:55827781-55827800 | None:intergenic | 50.0% |
| ACAGACAGCGAGGTAGCCAT+TGG | - | chr4.2:55828882-55828901 | None:intergenic | 55.0% | |
| CGTTCAAAAGCCGCATCCGA+AGG | + | chr4.2:55827768-55827787 | MS.gene064218:CDS | 55.0% | |
| GAGCATTTGGTTGCTGGGTC+AGG | + | chr4.2:55826610-55826629 | MS.gene064218:intron | 55.0% | |
| GAGCCGAGCATTTGGTTGCT+GGG | + | chr4.2:55826605-55826624 | MS.gene064218:intron | 55.0% | |
| GCAGATGCTCATGCACAAGG+AGG | + | chr4.2:55827057-55827076 | MS.gene064218:CDS | 55.0% | |
| GTTCTCACTTCTGCCCCGAA+AGG | + | chr4.2:55828902-55828921 | MS.gene064218:CDS | 55.0% | |
| TCTGGATTCCAGCTGCAGCA+AGG | - | chr4.2:55827815-55827834 | None:intergenic | 55.0% | |
| TGAGCCGAGCATTTGGTTGC+TGG | + | chr4.2:55826604-55826623 | MS.gene064218:intron | 55.0% | |
| TGAGCCTCCACCACGTATTG+AGG | + | chr4.2:55826173-55826192 | MS.gene064218:CDS | 55.0% | |
| !!! | CTGGTTTTATGCCCGGCGTT+AGG | + | chr4.2:55826503-55826522 | MS.gene064218:intron | 55.0% |
| TCAGCTGACCTTGCTGCAGC+TGG | + | chr4.2:55827804-55827823 | MS.gene064218:CDS | 60.0% | |
| CTGATGCTGCAGCACCGCCA+AGG | - | chr4.2:55827385-55827404 | None:intergenic | 65.0% | |
| !! | CTTGGCGGTGCTGCAGCATC+AGG | + | chr4.2:55827383-55827402 | MS.gene064218:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 55826162 | 55829136 | 55826162 | ID=MS.gene064218 |
| chr4.2 | mRNA | 55826162 | 55829136 | 55826162 | ID=MS.gene064218.t1;Parent=MS.gene064218 |
| chr4.2 | exon | 55826162 | 55826194 | 55826162 | ID=MS.gene064218.t1.exon1;Parent=MS.gene064218.t1 |
| chr4.2 | CDS | 55826162 | 55826194 | 55826162 | ID=cds.MS.gene064218.t1;Parent=MS.gene064218.t1 |
| chr4.2 | exon | 55826272 | 55826376 | 55826272 | ID=MS.gene064218.t1.exon2;Parent=MS.gene064218.t1 |
| chr4.2 | CDS | 55826272 | 55826376 | 55826272 | ID=cds.MS.gene064218.t1;Parent=MS.gene064218.t1 |
| chr4.2 | exon | 55826726 | 55826881 | 55826726 | ID=MS.gene064218.t1.exon3;Parent=MS.gene064218.t1 |
| chr4.2 | CDS | 55826726 | 55826881 | 55826726 | ID=cds.MS.gene064218.t1;Parent=MS.gene064218.t1 |
| chr4.2 | exon | 55826979 | 55827122 | 55826979 | ID=MS.gene064218.t1.exon4;Parent=MS.gene064218.t1 |
| chr4.2 | CDS | 55826979 | 55827122 | 55826979 | ID=cds.MS.gene064218.t1;Parent=MS.gene064218.t1 |
| chr4.2 | exon | 55827377 | 55827482 | 55827377 | ID=MS.gene064218.t1.exon5;Parent=MS.gene064218.t1 |
| chr4.2 | CDS | 55827377 | 55827482 | 55827377 | ID=cds.MS.gene064218.t1;Parent=MS.gene064218.t1 |
| chr4.2 | exon | 55827676 | 55827848 | 55827676 | ID=MS.gene064218.t1.exon6;Parent=MS.gene064218.t1 |
| chr4.2 | CDS | 55827676 | 55827848 | 55827676 | ID=cds.MS.gene064218.t1;Parent=MS.gene064218.t1 |
| chr4.2 | exon | 55827938 | 55828098 | 55827938 | ID=MS.gene064218.t1.exon7;Parent=MS.gene064218.t1 |
| chr4.2 | CDS | 55827938 | 55828098 | 55827938 | ID=cds.MS.gene064218.t1;Parent=MS.gene064218.t1 |
| chr4.2 | exon | 55828673 | 55828931 | 55828673 | ID=MS.gene064218.t1.exon8;Parent=MS.gene064218.t1 |
| chr4.2 | CDS | 55828673 | 55828931 | 55828673 | ID=cds.MS.gene064218.t1;Parent=MS.gene064218.t1 |
| chr4.2 | exon | 55829029 | 55829136 | 55829029 | ID=MS.gene064218.t1.exon9;Parent=MS.gene064218.t1 |
| chr4.2 | CDS | 55829029 | 55829136 | 55829029 | ID=cds.MS.gene064218.t1;Parent=MS.gene064218.t1 |
| Gene Sequence |
| Protein sequence |
