AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene046074


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene046074.t1 MTR_0008s0170 97.015 402 12 0 1 402 1 402 0.0 783
MS.gene046074.t1 MTR_0008s0130 80.100 402 80 0 1 402 1 402 0.0 669
MS.gene046074.t1 MTR_4g050990 82.090 402 72 0 1 402 1 402 0.0 656
MS.gene046074.t1 MTR_2g089520 82.090 402 72 0 1 402 1 402 0.0 656
MS.gene046074.t1 MTR_2g047968 79.449 399 82 0 4 402 4 402 0.0 619
MS.gene046074.t1 MTR_2g011600 69.018 397 121 1 7 401 14 410 0.0 548
MS.gene046074.t1 MTR_1g071120 75.931 349 75 3 11 358 53 393 0.0 531
MS.gene046074.t1 MTR_2g011580 69.377 369 112 1 34 401 1 369 0.0 522
MS.gene046074.t1 MTR_2g011600 67.227 357 115 1 47 401 3 359 1.97e-168 476
MS.gene046074.t1 MTR_8g007285 57.612 335 140 1 52 384 2 336 6.51e-132 384
MS.gene046074.t1 MTR_0003s0470 32.250 400 243 8 11 401 26 406 6.18e-55 187
MS.gene046074.t1 MTR_3g462280 30.424 401 249 9 11 401 34 414 2.39e-45 162
MS.gene046074.t1 MTR_4g114710 27.295 414 258 8 1 401 6 389 1.49e-38 143
MS.gene046074.t1 MTR_2g011530 69.565 92 27 1 278 368 2 93 8.32e-36 127
MS.gene046074.t1 MTR_2g011540 51.111 135 59 1 52 179 2 136 1.08e-35 129
MS.gene046074.t1 MTR_2g011560 36.842 152 40 3 177 323 17 117 6.58e-17 77.0
MS.gene046074.t1 MTR_2g011570 50.769 65 25 1 137 201 1 58 2.12e-12 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene046074.t1 AT4G05120 69.500 400 121 1 3 402 6 404 0.0 582
MS.gene046074.t1 AT4G05120 69.500 400 121 1 3 402 6 404 0.0 582
MS.gene046074.t1 AT4G05110 65.000 400 139 1 3 402 6 404 0.0 544
MS.gene046074.t1 AT4G05110 65.000 400 139 1 3 402 6 404 0.0 543
MS.gene046074.t1 AT4G05110 65.000 400 139 1 3 402 6 404 0.0 543
MS.gene046074.t1 AT4G05140 63.275 403 148 0 3 405 6 408 0.0 541
MS.gene046074.t1 AT4G05130 61.538 403 154 1 3 405 6 407 0.0 526
MS.gene046074.t1 AT3G09990 64.122 393 140 1 11 402 13 405 0.0 526
MS.gene046074.t1 AT1G61630 60.644 404 150 2 4 402 5 404 1.47e-175 496
MS.gene046074.t1 AT1G70330 32.039 412 247 9 2 401 51 441 5.59e-53 183
MS.gene046074.t1 AT1G02630 28.173 394 242 8 16 401 20 380 3.78e-42 153
MS.gene046074.t1 AT1G02630 29.688 192 133 2 22 212 26 216 3.93e-23 99.8

Find 87 sgRNAs with CRISPR-Local

Find 193 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGAAATAAGCAATTGTTAT+TGG 0.204429 4.4:+56846038 MS.gene046074:CDS
ACAAGGAAGCGGATTCTATT+TGG 0.224058 4.4:+56844893 MS.gene046074:CDS
TACTTCACAATTGGTAATTT+AGG 0.225152 4.4:-56845809 None:intergenic
TTACTATGTTTATTTATTTC+CGG 0.229116 4.4:+56844437 MS.gene046074:CDS
GATAATGTTGACATCTTTCC+TGG 0.253864 4.4:+56846914 MS.gene046074:CDS
ATCTTGGTATTGTTTCTTCT+TGG 0.254429 4.4:+56847121 MS.gene046074:CDS
ATGCTGACCTGAACAAATTC+TGG 0.275263 4.4:-56845176 None:intergenic
ATAATGGTTTGTTGGCTTCT+TGG 0.291167 4.4:+56844369 MS.gene046074:CDS
AGCAATATTTGAAAATTCTA+AGG 0.295643 4.4:+56845507 MS.gene046074:CDS
CTCAAATTGTCTTAATTCTT+CGG 0.301282 4.4:-56846010 None:intergenic
CTTGGCGGTGCTGCAGCATC+AGG 0.325226 4.4:+56845451 MS.gene046074:CDS
TGCATAGTTAGTGGTGCATT+TGG 0.338224 4.4:+56845098 MS.gene046074:CDS
GTTTGTTGGCTTCTTGGAAA+TGG 0.345493 4.4:+56844375 MS.gene046074:CDS
TTCTTCACCTTGTAGCCTTT+AGG 0.354115 4.4:-56846981 None:intergenic
GGGAAAATATGCTGCAATAA+TGG 0.365738 4.4:+56844353 MS.gene046074:intron
GCCTCTGTCTTAATTTAGCT+TGG 0.387405 4.4:-56847210 None:intergenic
TTGGTATTGTTTCTTCTTGG+AGG 0.389863 4.4:+56847124 MS.gene046074:CDS
TCAGCTGACCTTGCTGCAGC+TGG 0.400973 4.4:+56845872 MS.gene046074:CDS
GGAGGGATTGGAACATTCAT+TGG 0.406478 4.4:+56845071 MS.gene046074:CDS
AAATGCATTGGGAAATATCT+TGG 0.414446 4.4:+56847105 MS.gene046074:CDS
ACTGATCAAAATCTTGAAGT+TGG 0.417735 4.4:+56846797 MS.gene046074:CDS
CATGAATCCAGAATTTGTTC+AGG 0.422496 4.4:+56845169 MS.gene046074:CDS
GAACGGTAGTACTTCACAAT+TGG 0.426412 4.4:-56845818 None:intergenic
TTATTGTTGTAGTCTTTCCT+TGG 0.427988 4.4:+56845433 MS.gene046074:intron
GTGCTCTAACATCGGCTTTG+AGG 0.429741 4.4:+56845473 MS.gene046074:CDS
TACAATTAAAACAGCCAAAA+CGG 0.430063 4.4:-56844936 None:intergenic
AAGGTCAGCTGAAACAGTTT+TGG 0.431717 4.4:-56845861 None:intergenic
TATAATGTGTGGGATCTTAT+CGG 0.438703 4.4:+56846762 MS.gene046074:CDS
TTTGTTGGCTTCTTGGAAAT+GGG 0.439029 4.4:+56844376 MS.gene046074:CDS
CATGCACAAGGAGGAATGAT+TGG 0.442301 4.4:+56845134 MS.gene046074:CDS
AAGCTCAAACAAGGTTGATA+AGG 0.443767 4.4:-56845756 None:intergenic
ATGCTGCAATAATGGTTTGT+TGG 0.453042 4.4:+56844361 MS.gene046074:CDS
TAGTTGGATTTAGCAACATC+TGG 0.457762 4.4:+56845044 MS.gene046074:intron
ATTGGTATATGCATAGTTAG+TGG 0.468620 4.4:+56845089 MS.gene046074:CDS
TTGTTGTAGTCTTTCCTTGG+CGG 0.468717 4.4:+56845436 MS.gene046074:intron
CTAACATTGTCTATATTCCC+TGG 0.479334 4.4:+56846102 MS.gene046074:CDS
ACATCTGGTAAAGGAGGGAT+TGG 0.484610 4.4:+56845059 MS.gene046074:CDS
GATACCGGAACACACAGTTT+AGG 0.497923 4.4:+56846138 MS.gene046074:CDS
GTACTTCTCGAAATGAGGTC+TGG 0.497951 4.4:-56845898 None:intergenic
AGCAATTCTTACTTACTATG+AGG 0.505159 4.4:+56844859 MS.gene046074:CDS
GGACCTGAACAAAATGCATT+GGG 0.506071 4.4:+56847094 MS.gene046074:CDS
GCTAGTGTTCCAACTGCAAA+TGG 0.506628 4.4:-56844839 None:intergenic
GGGACCTGAACAAAATGCAT+TGG 0.516104 4.4:+56847093 MS.gene046074:intron
ATCACCTCAATTCGTGGTGG+AGG 0.522623 4.4:-56844242 None:intergenic
TGCAGAAATATCATCCCTCT+AGG 0.522851 4.4:+56844795 MS.gene046074:intron
TGTGCCTAAACTGTGTGTTC+CGG 0.527489 4.4:-56846142 None:intergenic
GATTTAGCAACATCTGGTAA+AGG 0.531613 4.4:+56845050 MS.gene046074:CDS
GTTCTCACTTCTGCACCTAA+AGG 0.535854 4.4:+56846966 MS.gene046074:CDS
AAACCGTACTTCTCGAAATG+AGG 0.538163 4.4:-56845903 None:intergenic
CAAAGTATGGTACTCAAGGT+TGG 0.542078 4.4:+56846889 MS.gene046074:CDS
TTCTGCACCTAAAGGCTACA+AGG 0.543449 4.4:+56846974 MS.gene046074:CDS
ACAGACAGCGAGGTAGCCAT+TGG 0.547272 4.4:-56846943 None:intergenic
ATTCTGGATTCATGTATGAC+AGG 0.549368 4.4:-56845160 None:intergenic
TGAGCCTCCACCACGAATTG+AGG 0.549820 4.4:+56844238 MS.gene046074:CDS
CTGATGCTGCAGCACCGCCA+AGG 0.552472 4.4:-56845450 None:intergenic
ATAATGTTGACATCTTTCCT+GGG 0.552580 4.4:+56846915 MS.gene046074:CDS
TATGGTTAATAGGTAAAGGA+TGG 0.554780 4.4:+56847176 MS.gene046074:intron
AAATTGTCTTAATTCTTCGG+TGG 0.562541 4.4:-56846007 None:intergenic
TTTGCAGTGAAATAAAATGC+TGG 0.563621 4.4:-56846870 None:intergenic
ATATATATCACCTCAATTCG+TGG 0.564481 4.4:-56844248 None:intergenic
GTATATCAGCCATTTGCAGT+TGG 0.566994 4.4:+56844830 MS.gene046074:CDS
ACTGCAAAGTATGGTACTCA+AGG 0.567878 4.4:+56846885 MS.gene046074:CDS
TTAAGACAATTTGAGCGCAA+AGG 0.573253 4.4:+56846018 MS.gene046074:CDS
AGCATCAGGTGCTCTAACAT+CGG 0.577110 4.4:+56845465 MS.gene046074:CDS
TAAAACAGCCAAAACGGCCA+AGG 0.577694 4.4:-56844930 None:intergenic
TTAGCAACATCTGGTAAAGG+AGG 0.580672 4.4:+56845053 MS.gene046074:CDS
AATTGCCATGTATAATGTGT+GGG 0.581184 4.4:+56846752 MS.gene046074:CDS
CGTTCAAAAGCAGCATCCGA+AGG 0.583519 4.4:+56845836 MS.gene046074:CDS
ATATTTGAAAATTCTAAGGA+CGG 0.599191 4.4:+56845511 MS.gene046074:CDS
GGTAGCCATTGGATATCCCC+AGG 0.599248 4.4:-56846932 None:intergenic
AAGATCCCACACATTATACA+TGG 0.604823 4.4:-56846757 None:intergenic
TCTTTCCTGGGGATATCCAA+TGG 0.609276 4.4:+56846927 MS.gene046074:CDS
TAGCAACATCTGGTAAAGGA+GGG 0.612233 4.4:+56845054 MS.gene046074:CDS
AACACAAAGAAGCTCAAACA+AGG 0.615784 4.4:-56845765 None:intergenic
TTAGCAGATGCTCATGCACA+AGG 0.620251 4.4:+56845122 MS.gene046074:CDS
TAATTGCCATGTATAATGTG+TGG 0.620934 4.4:+56846751 MS.gene046074:CDS
GCAGAAATATCATCCCTCTA+GGG 0.623345 4.4:+56844796 MS.gene046074:intron
GTTCAAAAGCAGCATCCGAA+GGG 0.625870 4.4:+56845837 MS.gene046074:CDS
TCTAAGGACGGACTTCGCAA+AGG 0.638434 4.4:+56845523 MS.gene046074:CDS
TAATGTTGACATCTTTCCTG+GGG 0.646765 4.4:+56846916 MS.gene046074:CDS
TCTGGATTCCAGCTGCAGCA+AGG 0.649624 4.4:-56845880 None:intergenic
ACTAGAGTAAGCACCCTAGA+GGG 0.650173 4.4:-56844809 None:intergenic
TACTAGAGTAAGCACCCTAG+AGG 0.657907 4.4:-56844810 None:intergenic
GAACACACAGTTTAGGCACA+TGG 0.670795 4.4:+56846145 MS.gene046074:CDS
TATATCACCTCAATTCGTGG+TGG 0.676520 4.4:-56844245 None:intergenic
AAGTGAGAACACAGACAGCG+AGG 0.688797 4.4:-56846953 None:intergenic
GCAGATGCTCATGCACAAGG+AGG 0.707799 4.4:+56845125 MS.gene046074:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTGATATTTGAATGTAT+TGG - chr4.4:56846486-56846505 None:intergenic 15.0%
!! AATTGATATTTGAATGTATT+GGG - chr4.4:56846485-56846504 None:intergenic 15.0%
!! TCGTTAGTTATTATTTATTT+CGG - chr4.4:56846372-56846391 None:intergenic 15.0%
!! TTACTATGTTTATTTATTTC+CGG + chr4.4:56844437-56844456 MS.gene046074:CDS 15.0%
!!! AAATTGATTTCTTTTAGTAT+CGG + chr4.4:56845647-56845666 MS.gene046074:intron 15.0%
!!! AATGATATTTTAAGAAGTAA+TGG + chr4.4:56846608-56846627 MS.gene046074:intron 15.0%
!! ACAAAATAAATGAGTGTAAA+AGG - chr4.4:56844561-56844580 None:intergenic 20.0%
!! AGCAATATTTGAAAATTCTA+AGG + chr4.4:56845507-56845526 MS.gene046074:CDS 20.0%
!! ATTTAAATAACTCTAAACCT+CGG - chr4.4:56847030-56847049 None:intergenic 20.0%
!! GAATCAAAATTAACTTTAAC+AGG - chr4.4:56844965-56844984 None:intergenic 20.0%
!! TTGATATTTCCATTTATTAC+AGG + chr4.4:56846715-56846734 MS.gene046074:intron 20.0%
!!! ATATTTGAAAATTCTAAGGA+CGG + chr4.4:56845511-56845530 MS.gene046074:CDS 20.0%
!!! GTATGTTTTTTACTTTTGTA+GGG + chr4.4:56847073-56847092 MS.gene046074:intron 20.0%
!!! TAAATTATTTTGCATTTGCA+GGG + chr4.4:56844333-56844352 MS.gene046074:intron 20.0%
!!! TGTATGTTTTTTACTTTTGT+AGG + chr4.4:56847072-56847091 MS.gene046074:intron 20.0%
!!! TTAAATTATTTTGCATTTGC+AGG + chr4.4:56844332-56844351 MS.gene046074:intron 20.0%
! AATAGTGAAAGATACATTTG+AGG + chr4.4:56846416-56846435 MS.gene046074:intron 25.0%
! ACAATGCTAACTTTGATATT+CGG + chr4.4:56845236-56845255 MS.gene046074:intron 25.0%
! AGGAAATAAGCAATTGTTAT+TGG + chr4.4:56846038-56846057 MS.gene046074:CDS 25.0%
! ATAGTGAAAGATACATTTGA+GGG + chr4.4:56846417-56846436 MS.gene046074:intron 25.0%
! ATATCATTCCAATATCTATC+TGG - chr4.4:56846596-56846615 None:intergenic 25.0%
! ATTCCTTCAAAATTTGCATT+TGG + chr4.4:56844981-56845000 MS.gene046074:intron 25.0%
! ATTTGAATGTATTGGGTATT+AGG - chr4.4:56846478-56846497 None:intergenic 25.0%
! CTCAAATTGTCTTAATTCTT+CGG - chr4.4:56846013-56846032 None:intergenic 25.0%
! GATTAACTAATACACATTTG+AGG + chr4.4:56846345-56846364 MS.gene046074:intron 25.0%
! GTATCTTTCACTATTCAATT+TGG - chr4.4:56846411-56846430 None:intergenic 25.0%
! TAACCAGAGTGAATATTTAA+CGG - chr4.4:56844503-56844522 None:intergenic 25.0%
! TACAATTAAAACAGCCAAAA+CGG - chr4.4:56844939-56844958 None:intergenic 25.0%
! TATCTTCTGATAAAAATCCA+GGG - chr4.4:56846122-56846141 None:intergenic 25.0%
! TGGATATCTTTATGAATTGT+AGG - chr4.4:56845675-56845694 None:intergenic 25.0%
! TTATATAACGATTGCAATTG+CGG + chr4.4:56845325-56845344 MS.gene046074:intron 25.0%
! TTCCTTCAAAATTTGCATTT+GGG + chr4.4:56844982-56845001 MS.gene046074:intron 25.0%
!! ACATATGCAACTCTTTTTAA+AGG + chr4.4:56845408-56845427 MS.gene046074:intron 25.0%
!! CTTTTCTTTTCAATTTCTCA+CGG + chr4.4:56845926-56845945 MS.gene046074:intron 25.0%
!! TACTTCACAATTGGTAATTT+AGG - chr4.4:56845812-56845831 None:intergenic 25.0%
!!! CACTCATTTATTTTGTAATC+TGG + chr4.4:56844565-56844584 MS.gene046074:intron 25.0%
!!! GAAGTATTCTAGTTTCTTAA+AGG - chr4.4:56847008-56847027 None:intergenic 25.0%
!!! GACTAATTTGTGTTTTTTTC+AGG + chr4.4:56845984-56846003 MS.gene046074:intron 25.0%
!!! GTTTTAAACTCAACAGTTTA+TGG - chr4.4:56846520-56846539 None:intergenic 25.0%
!!! TTTTATTTCACTGCAAAGTA+TGG + chr4.4:56846876-56846895 MS.gene046074:CDS 25.0%
AAAAGAGTTGCATATGTTGA+AGG - chr4.4:56845405-56845424 None:intergenic 30.0%
AAATGCATTGGGAAATATCT+TGG + chr4.4:56847105-56847124 MS.gene046074:CDS 30.0%
AAATTGTCTTAATTCTTCGG+TGG - chr4.4:56846010-56846029 None:intergenic 30.0%
AATTGCCATGTATAATGTGT+GGG + chr4.4:56846752-56846771 MS.gene046074:CDS 30.0%
ACTGATCAAAATCTTGAAGT+TGG + chr4.4:56846797-56846816 MS.gene046074:CDS 30.0%
AGCAATTCTTACTTACTATG+AGG + chr4.4:56844859-56844878 MS.gene046074:CDS 30.0%
ATAATGTTGACATCTTTCCT+GGG + chr4.4:56846915-56846934 MS.gene046074:CDS 30.0%
ATATATATCACCTCAATTCG+TGG - chr4.4:56844251-56844270 None:intergenic 30.0%
ATATCTCACCAGATAGATAT+TGG + chr4.4:56846585-56846604 MS.gene046074:intron 30.0%
ATGAGGCAAAAATCAATACA+AGG + chr4.4:56844876-56844895 MS.gene046074:CDS 30.0%
ATTGGTATATGCATAGTTAG+TGG + chr4.4:56845089-56845108 MS.gene046074:CDS 30.0%
CAAAAATCAATACAAGGAAG+CGG + chr4.4:56844882-56844901 MS.gene046074:CDS 30.0%
CAAACTGAATCTCAATAGTA+AGG - chr4.4:56845957-56845976 None:intergenic 30.0%
CAATGCTAACTTTGATATTC+GGG + chr4.4:56845237-56845256 MS.gene046074:intron 30.0%
CGAAAATGAAAAACATCTCT+CGG + chr4.4:56846288-56846307 MS.gene046074:intron 30.0%
GTATCTTCTGATAAAAATCC+AGG - chr4.4:56846123-56846142 None:intergenic 30.0%
TAAATATTCACTCTGGTTAG+CGG + chr4.4:56844504-56844523 MS.gene046074:intron 30.0%
TAATTGCCATGTATAATGTG+TGG + chr4.4:56846751-56846770 MS.gene046074:CDS 30.0%
TACAGCAGACATAATAAAAG+TGG - chr4.4:56844650-56844669 None:intergenic 30.0%
TATAATGTGTGGGATCTTAT+CGG + chr4.4:56846762-56846781 MS.gene046074:CDS 30.0%
TATCCGTTAAATATTCACTC+TGG + chr4.4:56844497-56844516 MS.gene046074:intron 30.0%
TATGGTTAATAGGTAAAGGA+TGG + chr4.4:56847176-56847195 MS.gene046074:intron 30.0%
TCAGAAAGTAGATACATTAC+CGG - chr4.4:56844459-56844478 None:intergenic 30.0%
TGGTTATGGTTAATAGGTAA+AGG + chr4.4:56847172-56847191 MS.gene046074:intron 30.0%
TTATTGTTGTAGTCTTTCCT+TGG + chr4.4:56845433-56845452 MS.gene046074:intron 30.0%
TTTGCAGTGAAATAAAATGC+TGG - chr4.4:56846873-56846892 None:intergenic 30.0%
! AACCCAAATGCAAATTTTGA+AGG - chr4.4:56844987-56845006 None:intergenic 30.0%
! AAGAGCATACCTGTAATAAA+TGG - chr4.4:56846727-56846746 None:intergenic 30.0%
! ATCTTGGTATTGTTTCTTCT+TGG + chr4.4:56847121-56847140 MS.gene046074:CDS 30.0%
! CTTGATTGGTTATGGTTAAT+AGG + chr4.4:56847166-56847185 MS.gene046074:intron 30.0%
! GGATTTTTATCAGAAGATAC+CGG + chr4.4:56846123-56846142 MS.gene046074:CDS 30.0%
!! AACTTCAAGATTTTGATCAG+TGG - chr4.4:56846798-56846817 None:intergenic 30.0%
!! GCATAAAATTGTTTCTGCAT+GGG - chr4.4:56845282-56845301 None:intergenic 30.0%
!!! TATAAAAGTTTTAGACGCCT+CGG - chr4.4:56845310-56845329 None:intergenic 30.0%
AACACAAAGAAGCTCAAACA+AGG - chr4.4:56845768-56845787 None:intergenic 35.0%
AACCACGAACAAACGATAAA+AGG - chr4.4:56846189-56846208 None:intergenic 35.0%
AAGAAACTAGAATACTTCCG+AGG + chr4.4:56847010-56847029 MS.gene046074:intron 35.0%
AAGATCCCACACATTATACA+TGG - chr4.4:56846760-56846779 None:intergenic 35.0%
ATCCATGATCATGATTCATG+TGG + chr4.4:56845690-56845709 MS.gene046074:intron 35.0%
ATTCTGGATTCATGTATGAC+AGG - chr4.4:56845163-56845182 None:intergenic 35.0%
CTAACATTGTCTATATTCCC+TGG + chr4.4:56846102-56846121 MS.gene046074:CDS 35.0%
CTGCTCAAAACAACAAAAGT+GGG + chr4.4:56846651-56846670 MS.gene046074:intron 35.0%
GATAATGTTGACATCTTTCC+TGG + chr4.4:56846914-56846933 MS.gene046074:CDS 35.0%
GATGTTGCTAAATCCAACTA+CGG - chr4.4:56845044-56845063 None:intergenic 35.0%
GATTTAGCAACATCTGGTAA+AGG + chr4.4:56845050-56845069 MS.gene046074:CDS 35.0%
GGGAAAATATGCTGCAATAA+TGG + chr4.4:56844353-56844372 MS.gene046074:intron 35.0%
GTCATAAACTTCGACTAAAC+TGG + chr4.4:56846215-56846234 MS.gene046074:intron 35.0%
TAATGTTGACATCTTTCCTG+GGG + chr4.4:56846916-56846935 MS.gene046074:CDS 35.0%
TACCACATGAATCATGATCA+TGG - chr4.4:56845695-56845714 None:intergenic 35.0%
TAGTTGGATTTAGCAACATC+TGG + chr4.4:56845044-56845063 MS.gene046074:intron 35.0%
TCTGCTCAAAACAACAAAAG+TGG + chr4.4:56846650-56846669 MS.gene046074:intron 35.0%
TTAAGACAATTTGAGCGCAA+AGG + chr4.4:56846018-56846037 MS.gene046074:CDS 35.0%
! AGAAAGTACAAAGAACTGAG+AGG - chr4.4:56844716-56844735 None:intergenic 35.0%
! ATCCTTTTATCGTTTGTTCG+TGG + chr4.4:56846184-56846203 MS.gene046074:intron 35.0%
! ATGCTGCAATAATGGTTTGT+TGG + chr4.4:56844361-56844380 MS.gene046074:CDS 35.0%
! CATGAATCCAGAATTTGTTC+AGG + chr4.4:56845169-56845188 MS.gene046074:CDS 35.0%
! GAAAGTACAAAGAACTGAGA+GGG - chr4.4:56844715-56844734 None:intergenic 35.0%
! GATGATATTTCTGCACAAAG+AGG - chr4.4:56844790-56844809 None:intergenic 35.0%
! TATTTCTGCACAAAGAGGAA+AGG - chr4.4:56844785-56844804 None:intergenic 35.0%
! TGGATACACACTATTTTCCT+TGG + chr4.4:56844913-56844932 MS.gene046074:CDS 35.0%
! TTGGTATTGTTTCTTCTTGG+AGG + chr4.4:56847124-56847143 MS.gene046074:CDS 35.0%
! TTTCCCAATGCATTTTGTTC+AGG - chr4.4:56847100-56847119 None:intergenic 35.0%
! TTTTGATCCCTAAATGTGTG+CGG + chr4.4:56846240-56846259 MS.gene046074:intron 35.0%
!! AAAACAACAAAAGTGGGCTA+AGG + chr4.4:56846657-56846676 MS.gene046074:intron 35.0%
!! AAGCTCAAACAAGGTTGATA+AGG - chr4.4:56845759-56845778 None:intergenic 35.0%
!! ATAATGGTTTGTTGGCTTCT+TGG + chr4.4:56844369-56844388 MS.gene046074:CDS 35.0%
!! GGCATAAAATTGTTTCTGCA+TGG - chr4.4:56845283-56845302 None:intergenic 35.0%
!! TTTGTTGGCTTCTTGGAAAT+GGG + chr4.4:56844376-56844395 MS.gene046074:CDS 35.0%
!!! TTCTTGGAGGTATTTTTGCA+GGG + chr4.4:56847137-56847156 MS.gene046074:CDS 35.0%
AAACCGTACTTCTCGAAATG+AGG - chr4.4:56845906-56845925 None:intergenic 40.0%
AAGAACTGCATGAATCAGAG+AGG - chr4.4:56845729-56845748 None:intergenic 40.0%
ACTGCAAAGTATGGTACTCA+AGG + chr4.4:56846885-56846904 MS.gene046074:CDS 40.0%
AGACCTCATTTCGAGAAGTA+CGG + chr4.4:56845900-56845919 MS.gene046074:intron 40.0%
ATGCTGACCTGAACAAATTC+TGG - chr4.4:56845179-56845198 None:intergenic 40.0%
CAAAGTATGGTACTCAAGGT+TGG + chr4.4:56846889-56846908 MS.gene046074:CDS 40.0%
GAACGGTAGTACTTCACAAT+TGG - chr4.4:56845821-56845840 None:intergenic 40.0%
GCAGAAATATCATCCCTCTA+GGG + chr4.4:56844796-56844815 MS.gene046074:intron 40.0%
GGACCTGAACAAAATGCATT+GGG + chr4.4:56847094-56847113 MS.gene046074:CDS 40.0%
GTATATCAGCCATTTGCAGT+TGG + chr4.4:56844830-56844849 MS.gene046074:CDS 40.0%
TAGCAACATCTGGTAAAGGA+GGG + chr4.4:56845054-56845073 MS.gene046074:CDS 40.0%
TATATCACCTCAATTCGTGG+TGG - chr4.4:56844248-56844267 None:intergenic 40.0%
TGCAGAAATATCATCCCTCT+AGG + chr4.4:56844795-56844814 MS.gene046074:intron 40.0%
TGCATAGTTAGTGGTGCATT+TGG + chr4.4:56845098-56845117 MS.gene046074:CDS 40.0%
TTAGCAACATCTGGTAAAGG+AGG + chr4.4:56845053-56845072 MS.gene046074:CDS 40.0%
TTCTTCACCTTGTAGCCTTT+AGG - chr4.4:56846984-56847003 None:intergenic 40.0%
TTGTTGTAGTCTTTCCTTGG+CGG + chr4.4:56845436-56845455 MS.gene046074:intron 40.0%
! AAGGTCAGCTGAAACAGTTT+TGG - chr4.4:56845864-56845883 None:intergenic 40.0%
! ACAAGGAAGCGGATTCTATT+TGG + chr4.4:56844893-56844912 MS.gene046074:CDS 40.0%
! ACAATTTTATGCCTTTGCCG+AGG + chr4.4:56845290-56845309 MS.gene046074:intron 40.0%
! ACTATTTTCCTTGGCCGTTT+TGG + chr4.4:56844922-56844941 MS.gene046074:CDS 40.0%
! GAAATGGGTGTCTTTTCTCT+TGG + chr4.4:56844391-56844410 MS.gene046074:CDS 40.0%
! GGGTAACACTTGATTGGTTA+TGG + chr4.4:56847158-56847177 MS.gene046074:intron 40.0%
!! GTTTGTTGGCTTCTTGGAAA+TGG + chr4.4:56844375-56844394 MS.gene046074:CDS 40.0%
!!! CTTCTTGGAGGTATTTTTGC+AGG + chr4.4:56847136-56847155 MS.gene046074:CDS 40.0%
!!! TCTTGGAGGTATTTTTGCAG+GGG + chr4.4:56847138-56847157 MS.gene046074:CDS 40.0%
!!! TGAAACAGTTTTGGACCCTT+CGG - chr4.4:56845855-56845874 None:intergenic 40.0%
AATGTGTGCGGTGGATACTA+TGG + chr4.4:56846252-56846271 MS.gene046074:intron 45.0%
ACATCTGGTAAAGGAGGGAT+TGG + chr4.4:56845059-56845078 MS.gene046074:CDS 45.0%
ACCTATTTACGTGCCGTAGT+TGG + chr4.4:56845028-56845047 MS.gene046074:intron 45.0%
ACTAGAGTAAGCACCCTAGA+GGG - chr4.4:56844812-56844831 None:intergenic 45.0%
AGCATCAGGTGCTCTAACAT+CGG + chr4.4:56845465-56845484 MS.gene046074:CDS 45.0%
AGTATCCACCGCACACATTT+AGG - chr4.4:56846251-56846270 None:intergenic 45.0%
CATGCACAAGGAGGAATGAT+TGG + chr4.4:56845134-56845153 MS.gene046074:CDS 45.0%
GAACACACAGTTTAGGCACA+TGG + chr4.4:56846145-56846164 MS.gene046074:CDS 45.0%
GATACCGGAACACACAGTTT+AGG + chr4.4:56846138-56846157 MS.gene046074:CDS 45.0%
GCTAGTGTTCCAACTGCAAA+TGG - chr4.4:56844842-56844861 None:intergenic 45.0%
GCTGTAATACTCTTCTCGAG+CGG + chr4.4:56844664-56844683 MS.gene046074:intron 45.0%
GGAGGGATTGGAACATTCAT+TGG + chr4.4:56845071-56845090 MS.gene046074:CDS 45.0%
GGGACCTGAACAAAATGCAT+TGG + chr4.4:56847093-56847112 MS.gene046074:intron 45.0%
GTACTTCTCGAAATGAGGTC+TGG - chr4.4:56845901-56845920 None:intergenic 45.0%
GTATCCACCGCACACATTTA+GGG - chr4.4:56846250-56846269 None:intergenic 45.0%
GTATGTTGCAGCTGTCTGTT+GGG + chr4.4:56844606-56844625 MS.gene046074:intron 45.0%
GTTCAAAAGCAGCATCCGAA+GGG + chr4.4:56845837-56845856 MS.gene046074:CDS 45.0%
GTTCAGGTCAGCATCATCAA+TGG + chr4.4:56845185-56845204 MS.gene046074:intron 45.0%
GTTCTCACTTCTGCACCTAA+AGG + chr4.4:56846966-56846985 MS.gene046074:CDS 45.0%
TAAAACAGCCAAAACGGCCA+AGG - chr4.4:56844933-56844952 None:intergenic 45.0%
TACTAGAGTAAGCACCCTAG+AGG - chr4.4:56844813-56844832 None:intergenic 45.0%
TCCAACTACGGCACGTAAAT+AGG - chr4.4:56845032-56845051 None:intergenic 45.0%
TCTTTCCTGGGGATATCCAA+TGG + chr4.4:56846927-56846946 MS.gene046074:CDS 45.0%
TGTGCCTAAACTGTGTGTTC+CGG - chr4.4:56846145-56846164 None:intergenic 45.0%
TTAGCAGATGCTCATGCACA+AGG + chr4.4:56845122-56845141 MS.gene046074:CDS 45.0%
TTCTGCACCTAAAGGCTACA+AGG + chr4.4:56846974-56846993 MS.gene046074:CDS 45.0%
TTGCAGGGGTAACACTTGAT+TGG + chr4.4:56847152-56847171 MS.gene046074:intron 45.0%
! CTGGTTCGTTATGATGCTTG+CGG + chr4.4:56844535-56844554 MS.gene046074:intron 45.0%
!!! CTGGTTTTAAGCCCTGCTTT+GGG + chr4.4:56844584-56844603 MS.gene046074:intron 45.0%
!!! CTTCGGATGCTGCTTTTGAA+CGG - chr4.4:56845838-56845857 None:intergenic 45.0%
!!! TCTGGTTTTAAGCCCTGCTT+TGG + chr4.4:56844583-56844602 MS.gene046074:intron 45.0%
AAGTGAGAACACAGACAGCG+AGG - chr4.4:56846956-56846975 None:intergenic 50.0%
AGCTGCAACATACCCAAAGC+AGG - chr4.4:56844599-56844618 None:intergenic 50.0%
ATCACCTCAATTCGTGGTGG+AGG - chr4.4:56844245-56844264 None:intergenic 50.0%
CAGCACTCTGATGCTTAGCA+TGG + chr4.4:56845558-56845577 MS.gene046074:intron 50.0%
CGTTCAAAAGCAGCATCCGA+AGG + chr4.4:56845836-56845855 MS.gene046074:CDS 50.0%
CTGGTTAGCGGTGATATCTC+TGG + chr4.4:56844516-56844535 MS.gene046074:intron 50.0%
GCTGCAACATACCCAAAGCA+GGG - chr4.4:56844598-56844617 None:intergenic 50.0%
GGTATGTTGCAGCTGTCTGT+TGG + chr4.4:56844605-56844624 MS.gene046074:intron 50.0%
TGATCCCTAAATGTGTGCGG+TGG + chr4.4:56846243-56846262 MS.gene046074:intron 50.0%
! TCTAAGGACGGACTTCGCAA+AGG + chr4.4:56845523-56845542 MS.gene046074:CDS 50.0%
! TCTCTCGGTGTATGTCTCGT+TGG + chr4.4:56846303-56846322 MS.gene046074:intron 50.0%
!! CTCGAGCGGACTATTTGGTT+GGG + chr4.4:56844678-56844697 MS.gene046074:intron 50.0%
!! CTCTTCTCGAGCGGACTATT+TGG + chr4.4:56844673-56844692 MS.gene046074:intron 50.0%
!! GTGCTCTAACATCGGCTTTG+AGG + chr4.4:56845473-56845492 MS.gene046074:CDS 50.0%
!! TCTCGAGCGGACTATTTGGT+TGG + chr4.4:56844677-56844696 MS.gene046074:intron 50.0%
!!! AGTTTTAGACGCCTCGGCAA+AGG - chr4.4:56845304-56845323 None:intergenic 50.0%
ACAGACAGCGAGGTAGCCAT+TGG - chr4.4:56846946-56846965 None:intergenic 55.0%
GCAGATGCTCATGCACAAGG+AGG + chr4.4:56845125-56845144 MS.gene046074:CDS 55.0%
GGTAGCCATTGGATATCCCC+AGG - chr4.4:56846935-56846954 None:intergenic 55.0%
TCTGGATTCCAGCTGCAGCA+AGG - chr4.4:56845883-56845902 None:intergenic 55.0%
TGAGCCTCCACCACGAATTG+AGG + chr4.4:56844238-56844257 MS.gene046074:CDS 55.0%
TCAGCTGACCTTGCTGCAGC+TGG + chr4.4:56845872-56845891 MS.gene046074:CDS 60.0%
! GAACTGAGAGGGCGTAAGCC+TGG - chr4.4:56844704-56844723 None:intergenic 60.0%
! GCGGACTATTTGGTTGGGCC+AGG + chr4.4:56844683-56844702 MS.gene046074:intron 60.0%
CTGATGCTGCAGCACCGCCA+AGG - chr4.4:56845453-56845472 None:intergenic 65.0%
!! CTTGGCGGTGCTGCAGCATC+AGG + chr4.4:56845451-56845470 MS.gene046074:CDS 65.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 56844227 56847223 56844227 ID=MS.gene046074
chr4.4 mRNA 56844227 56847223 56844227 ID=MS.gene046074.t1;Parent=MS.gene046074
chr4.4 exon 56844227 56844259 56844227 ID=MS.gene046074.t1.exon1;Parent=MS.gene046074.t1
chr4.4 CDS 56844227 56844259 56844227 ID=cds.MS.gene046074.t1;Parent=MS.gene046074.t1
chr4.4 exon 56844354 56844458 56844354 ID=MS.gene046074.t1.exon2;Parent=MS.gene046074.t1
chr4.4 CDS 56844354 56844458 56844354 ID=cds.MS.gene046074.t1;Parent=MS.gene046074.t1
chr4.4 exon 56844800 56844955 56844800 ID=MS.gene046074.t1.exon3;Parent=MS.gene046074.t1
chr4.4 CDS 56844800 56844955 56844800 ID=cds.MS.gene046074.t1;Parent=MS.gene046074.t1
chr4.4 exon 56845047 56845190 56845047 ID=MS.gene046074.t1.exon4;Parent=MS.gene046074.t1
chr4.4 CDS 56845047 56845190 56845047 ID=cds.MS.gene046074.t1;Parent=MS.gene046074.t1
chr4.4 exon 56845445 56845550 56845445 ID=MS.gene046074.t1.exon5;Parent=MS.gene046074.t1
chr4.4 CDS 56845445 56845550 56845445 ID=cds.MS.gene046074.t1;Parent=MS.gene046074.t1
chr4.4 exon 56845744 56845916 56845744 ID=MS.gene046074.t1.exon6;Parent=MS.gene046074.t1
chr4.4 CDS 56845744 56845916 56845744 ID=cds.MS.gene046074.t1;Parent=MS.gene046074.t1
chr4.4 exon 56846006 56846166 56846006 ID=MS.gene046074.t1.exon7;Parent=MS.gene046074.t1
chr4.4 CDS 56846006 56846166 56846006 ID=cds.MS.gene046074.t1;Parent=MS.gene046074.t1
chr4.4 exon 56846737 56846995 56846737 ID=MS.gene046074.t1.exon8;Parent=MS.gene046074.t1
chr4.4 CDS 56846737 56846995 56846737 ID=cds.MS.gene046074.t1;Parent=MS.gene046074.t1
chr4.4 exon 56847094 56847159 56847094 ID=MS.gene046074.t1.exon9;Parent=MS.gene046074.t1
chr4.4 CDS 56847094 56847159 56847094 ID=cds.MS.gene046074.t1;Parent=MS.gene046074.t1
chr4.4 exon 56847188 56847223 56847188 ID=MS.gene046074.t1.exon10;Parent=MS.gene046074.t1
chr4.4 CDS 56847188 56847223 56847188 ID=cds.MS.gene046074.t1;Parent=MS.gene046074.t1
Gene Sequence

>MS.gene046074

ATGGGCGACAGTGAGCCTCCACCACGAATTGAGGTGATATATATTACTAATTACTAACTTAATTATTACTTTAGCAAAGATTATATATGCTTTATAGTTCATCATTTAAATTATTTTGCATTTGCAGGGAAAATATGCTGCAATAATGGTTTGTTGGCTTCTTGGAAATGGGTGTCTTTTCTCTTGGAACAGTATGCTAACAATTGAAGATTACTATGTTTATTTATTTCCGGTAATGTATCTACTTTCTGATGCATTTTTTAGTTGATGTATCCGTTAAATATTCACTCTGGTTAGCGGTGATATCTCTGGTTCGTTATGATGCTTGCGGCCTTTTACACTCATTTATTTTGTAATCTGGTTTTAAGCCCTGCTTTGGGTATGTTGCAGCTGTCTGTTGGGCATTTGTTTTTCTTTATACCACTTTTATTATGTCTGCTGTAATACTCTTCTCGAGCGGACTATTTGGTTGGGCCAGGCTTACGCCCTCTCAGTTCTTTGTACTTTCTCTTTATTTTATATATTTTTCTTTGCTTAAAAAAAAAACTTAAATTTCCTTTCCTCTTTGTGCAGAAATATCATCCCTCTAGGGTGCTTACTCTAGTATATCAGCCATTTGCAGTTGGAACACTAGCAATTCTTACTTACTATGAGGCAAAAATCAATACAAGGAAGCGGATTCTATTTGGATACACACTATTTTCCTTGGCCGTTTTGGCTGTTTTAATTGTAAATCCTGTTAAAGTTAATTTTGATTCCTTCAAAATTTGCATTTGGGTTTTAAATTTTGATTTATAATAAACCTATTTACGTGCCGTAGTTGGATTTAGCAACATCTGGTAAAGGAGGGATTGGAACATTCATTGGTATATGCATAGTTAGTGGTGCATTTGGATTAGCAGATGCTCATGCACAAGGAGGAATGATTGGAGACCTGTCATACATGAATCCAGAATTTGTTCAGGTCAGCATCATCAATGGAACATATTTCTTAATTGCAGTCGCATCTACAATGCTAACTTTGATATTCGGGAAAATATGAGCAATTGCAGCCCATGCAGAAACAATTTTATGCCTTTGCCGAGGCGTCTAAAACTTTTATATAACGATTGCAATTGCGGTTACAGACTGCAATTTAGAACTATGAATGAAATTACTACGATATTTAGAAACTTCCTTCAACATATGCAACTCTTTTTAAAGGTTTTATTGTTGTAGTCTTTCCTTGGCGGTGCTGCAGCATCAGGTGCTCTAACATCGGCTTTGAGGTTAATTACAAAAGCAATATTTGAAAATTCTAAGGACGGACTTCGCAAAGGAGCGAGTAAGTTCAGCACTCTGATGCTTAGCATGGAAACATAGAAGTAGTTTTTGTCTCTATTTCTATTCAGTTAATTTTGACAATAATTTCTTAGCATGCAAATTGATTTCTTTTAGTATCGGTTCCTACAATTCATAAAGATATCCATGATCATGATTCATGTGGTAAACTGAATATTCCTCTCTGATTCATGCAGTTCTTTTCTTTTCCTTATCAACCTTGTTTGAGCTTCTTTGTGTTGTTCTCTATGCATTTGTGTTTCCTAAATTACCAATTGTGAAGTACTACCGTTCAAAAGCAGCATCCGAAGGGTCCAAAACTGTTTCAGCTGACCTTGCTGCAGCTGGAATCCAGACCTCATTTCGAGAAGTACGGTTTCTTTTCTTTTCAATTTCTCACGGAACTGCCTTACTATTGAGATTCAGTTTGTTTATTAGACTAATTTGTGTTTTTTTCAGGCCACCGAAGAATTAAGACAATTTGAGCGCAAAGGAAATAAGCAATTGTTATTGGAAAACATTGATTATGCAATTGATTTGTTTCTAATATTTGCGCTAACATTGTCTATATTCCCTGGATTTTTATCAGAAGATACCGGAACACACAGTTTAGGCACATGGTAAGTTCACTACTTGAATCCTTTTATCGTTTGTTCGTGGTTTTTTTAGTCATAAACTTCGACTAAACTGGCATTTTGATCCCTAAATGTGTGCGGTGGATACTATGGTCACTGAATCTATCGAAAATGAAAAACATCTCTCGGTGTATGTCTCGTTGGTATTTATTTGAACAAAAGTGATTAACTAATACACATTTGAGGACCGAAATAAATAATAACTAACGAAAGATACATTTCAGAACCAAATTGAATAGTGAAAGATACATTTGAGGGTGTCTTCGTAATTTTGATAAATTCAGATAGTAAAACCTAATACCCAATACATTCAAATATCAATTTAACTATATACTCCATAAACTGTTGAGTTTAAAACTTATGTGTCGCAAGTGCAATAAAGTCTTACAAATGCATCTTAATCATATCTCACCAGATAGATATTGGAATGATATTTTAAGAAGTAATGGAAACAAGACACTAAACATTTCTGCTCAAAACAACAAAAGTGGGCTAAGGTCTTTGTTTGTATGTATGTTCAATTTCAAAACTAGTTGATATTTCCATTTATTACAGGTATGCTCTTGTTTTAATTGCCATGTATAATGTGTGGGATCTTATCGGAAGATACATTCCACTGATCAAAATCTTGAAGTTGGAGTCTAGAAAGTTGATCACTACAGCAGTTATTTCTCGAGTTTTACTTGTACCAGCATTTTATTTCACTGCAAAGTATGGTACTCAAGGTTGGATGATAATGTTGACATCTTTCCTGGGGATATCCAATGGCTACCTCGCTGTCTGTGTTCTCACTTCTGCACCTAAAGGCTACAAGGTGAAGAATCCTTTAAGAAACTAGAATACTTCCGAGGTTTAGAGTTATTTAAATATTGAATAGATTCGTTGATATTTGTATGTTTTTTACTTTTGTAGGGACCTGAACAAAATGCATTGGGAAATATCTTGGTATTGTTTCTTCTTGGAGGTATTTTTGCAGGGGTAACACTTGATTGGTTATGGTTAATAGGTAAAGGATGGTGAGATCTCAACCAAGCTAAATTAA

Protein sequence

>MS.gene046074.t1

MGDSEPPPRIEGKYAAIMVCWLLGNGCLFSWNSMLTIEDYYVYLFPKYHPSRVLTLVYQPFAVGTLAILTYYEAKINTRKRILFGYTLFSLAVLAVLILDLATSGKGGIGTFIGICIVSGAFGLADAHAQGGMIGDLSYMNPEFVQSFLGGAAASGALTSALRLITKAIFENSKDGLRKGAILFFSLSTLFELLCVVLYAFVFPKLPIVKYYRSKAASEGSKTVSADLAAAGIQTSFREATEELRQFERKGNKQLLLENIDYAIDLFLIFALTLSIFPGFLSEDTGTHSLGTWYALVLIAMYNVWDLIGRYIPLIKILKLESRKLITTAVISRVLLVPAFYFTAKYGTQGWMIMLTSFLGISNGYLAVCVLTSAPKGYKGPEQNALGNILVLFLLGGIFAGVKDGEISTKLN