Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene046074.t1 | KEH17554.1 | 97 | 402 | 12 | 0 | 1 | 402 | 1 | 402 | 2.20E-215 | 758.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene046074.t1 | Q9M0Y3 | 69.5 | 400 | 121 | 1 | 3 | 402 | 6 | 404 | 1.2e-158 | 560.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene046074.t1 | A0A072TIZ8 | 97.0 | 402 | 12 | 0 | 1 | 402 | 1 | 402 | 1.6e-215 | 758.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene35750 | MS.gene046074 | PPI |
MS.gene046074 | MS.gene45316 | PPI |
MS.gene046074 | MS.gene043342 | PPI |
MS.gene046074 | MS.gene064214 | PPI |
MS.gene046074 | MS.gene046071 | PPI |
MS.gene046074 | MS.gene51416 | PPI |
MS.gene046074 | MS.gene51414 | PPI |
MS.gene064217 | MS.gene046074 | PPI |
MS.gene046074 | MS.gene31551 | PPI |
MS.gene046074 | MS.gene45320 | PPI |
MS.gene046074 | MS.gene029003 | PPI |
MS.gene046074 | MS.gene45318 | PPI |
MS.gene046074 | MS.gene064218 | PPI |
MS.gene046074 | MS.gene046073 | PPI |
MS.gene046074 | MS.gene51411 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene046074.t1 | MTR_0008s0170 | 97.015 | 402 | 12 | 0 | 1 | 402 | 1 | 402 | 0.0 | 783 |
MS.gene046074.t1 | MTR_0008s0130 | 80.100 | 402 | 80 | 0 | 1 | 402 | 1 | 402 | 0.0 | 669 |
MS.gene046074.t1 | MTR_4g050990 | 82.090 | 402 | 72 | 0 | 1 | 402 | 1 | 402 | 0.0 | 656 |
MS.gene046074.t1 | MTR_2g089520 | 82.090 | 402 | 72 | 0 | 1 | 402 | 1 | 402 | 0.0 | 656 |
MS.gene046074.t1 | MTR_2g047968 | 79.449 | 399 | 82 | 0 | 4 | 402 | 4 | 402 | 0.0 | 619 |
MS.gene046074.t1 | MTR_2g011600 | 69.018 | 397 | 121 | 1 | 7 | 401 | 14 | 410 | 0.0 | 548 |
MS.gene046074.t1 | MTR_1g071120 | 75.931 | 349 | 75 | 3 | 11 | 358 | 53 | 393 | 0.0 | 531 |
MS.gene046074.t1 | MTR_2g011580 | 69.377 | 369 | 112 | 1 | 34 | 401 | 1 | 369 | 0.0 | 522 |
MS.gene046074.t1 | MTR_2g011600 | 67.227 | 357 | 115 | 1 | 47 | 401 | 3 | 359 | 1.97e-168 | 476 |
MS.gene046074.t1 | MTR_8g007285 | 57.612 | 335 | 140 | 1 | 52 | 384 | 2 | 336 | 6.51e-132 | 384 |
MS.gene046074.t1 | MTR_0003s0470 | 32.250 | 400 | 243 | 8 | 11 | 401 | 26 | 406 | 6.18e-55 | 187 |
MS.gene046074.t1 | MTR_3g462280 | 30.424 | 401 | 249 | 9 | 11 | 401 | 34 | 414 | 2.39e-45 | 162 |
MS.gene046074.t1 | MTR_4g114710 | 27.295 | 414 | 258 | 8 | 1 | 401 | 6 | 389 | 1.49e-38 | 143 |
MS.gene046074.t1 | MTR_2g011530 | 69.565 | 92 | 27 | 1 | 278 | 368 | 2 | 93 | 8.32e-36 | 127 |
MS.gene046074.t1 | MTR_2g011540 | 51.111 | 135 | 59 | 1 | 52 | 179 | 2 | 136 | 1.08e-35 | 129 |
MS.gene046074.t1 | MTR_2g011560 | 36.842 | 152 | 40 | 3 | 177 | 323 | 17 | 117 | 6.58e-17 | 77.0 |
MS.gene046074.t1 | MTR_2g011570 | 50.769 | 65 | 25 | 1 | 137 | 201 | 1 | 58 | 2.12e-12 | 62.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene046074.t1 | AT4G05120 | 69.500 | 400 | 121 | 1 | 3 | 402 | 6 | 404 | 0.0 | 582 |
MS.gene046074.t1 | AT4G05120 | 69.500 | 400 | 121 | 1 | 3 | 402 | 6 | 404 | 0.0 | 582 |
MS.gene046074.t1 | AT4G05110 | 65.000 | 400 | 139 | 1 | 3 | 402 | 6 | 404 | 0.0 | 544 |
MS.gene046074.t1 | AT4G05110 | 65.000 | 400 | 139 | 1 | 3 | 402 | 6 | 404 | 0.0 | 543 |
MS.gene046074.t1 | AT4G05110 | 65.000 | 400 | 139 | 1 | 3 | 402 | 6 | 404 | 0.0 | 543 |
MS.gene046074.t1 | AT4G05140 | 63.275 | 403 | 148 | 0 | 3 | 405 | 6 | 408 | 0.0 | 541 |
MS.gene046074.t1 | AT4G05130 | 61.538 | 403 | 154 | 1 | 3 | 405 | 6 | 407 | 0.0 | 526 |
MS.gene046074.t1 | AT3G09990 | 64.122 | 393 | 140 | 1 | 11 | 402 | 13 | 405 | 0.0 | 526 |
MS.gene046074.t1 | AT1G61630 | 60.644 | 404 | 150 | 2 | 4 | 402 | 5 | 404 | 1.47e-175 | 496 |
MS.gene046074.t1 | AT1G70330 | 32.039 | 412 | 247 | 9 | 2 | 401 | 51 | 441 | 5.59e-53 | 183 |
MS.gene046074.t1 | AT1G02630 | 28.173 | 394 | 242 | 8 | 16 | 401 | 20 | 380 | 3.78e-42 | 153 |
MS.gene046074.t1 | AT1G02630 | 29.688 | 192 | 133 | 2 | 22 | 212 | 26 | 216 | 3.93e-23 | 99.8 |
Find 87 sgRNAs with CRISPR-Local
Find 193 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGGAAATAAGCAATTGTTAT+TGG | 0.204429 | 4.4:+56846038 | MS.gene046074:CDS |
ACAAGGAAGCGGATTCTATT+TGG | 0.224058 | 4.4:+56844893 | MS.gene046074:CDS |
TACTTCACAATTGGTAATTT+AGG | 0.225152 | 4.4:-56845809 | None:intergenic |
TTACTATGTTTATTTATTTC+CGG | 0.229116 | 4.4:+56844437 | MS.gene046074:CDS |
GATAATGTTGACATCTTTCC+TGG | 0.253864 | 4.4:+56846914 | MS.gene046074:CDS |
ATCTTGGTATTGTTTCTTCT+TGG | 0.254429 | 4.4:+56847121 | MS.gene046074:CDS |
ATGCTGACCTGAACAAATTC+TGG | 0.275263 | 4.4:-56845176 | None:intergenic |
ATAATGGTTTGTTGGCTTCT+TGG | 0.291167 | 4.4:+56844369 | MS.gene046074:CDS |
AGCAATATTTGAAAATTCTA+AGG | 0.295643 | 4.4:+56845507 | MS.gene046074:CDS |
CTCAAATTGTCTTAATTCTT+CGG | 0.301282 | 4.4:-56846010 | None:intergenic |
CTTGGCGGTGCTGCAGCATC+AGG | 0.325226 | 4.4:+56845451 | MS.gene046074:CDS |
TGCATAGTTAGTGGTGCATT+TGG | 0.338224 | 4.4:+56845098 | MS.gene046074:CDS |
GTTTGTTGGCTTCTTGGAAA+TGG | 0.345493 | 4.4:+56844375 | MS.gene046074:CDS |
TTCTTCACCTTGTAGCCTTT+AGG | 0.354115 | 4.4:-56846981 | None:intergenic |
GGGAAAATATGCTGCAATAA+TGG | 0.365738 | 4.4:+56844353 | MS.gene046074:intron |
GCCTCTGTCTTAATTTAGCT+TGG | 0.387405 | 4.4:-56847210 | None:intergenic |
TTGGTATTGTTTCTTCTTGG+AGG | 0.389863 | 4.4:+56847124 | MS.gene046074:CDS |
TCAGCTGACCTTGCTGCAGC+TGG | 0.400973 | 4.4:+56845872 | MS.gene046074:CDS |
GGAGGGATTGGAACATTCAT+TGG | 0.406478 | 4.4:+56845071 | MS.gene046074:CDS |
AAATGCATTGGGAAATATCT+TGG | 0.414446 | 4.4:+56847105 | MS.gene046074:CDS |
ACTGATCAAAATCTTGAAGT+TGG | 0.417735 | 4.4:+56846797 | MS.gene046074:CDS |
CATGAATCCAGAATTTGTTC+AGG | 0.422496 | 4.4:+56845169 | MS.gene046074:CDS |
GAACGGTAGTACTTCACAAT+TGG | 0.426412 | 4.4:-56845818 | None:intergenic |
TTATTGTTGTAGTCTTTCCT+TGG | 0.427988 | 4.4:+56845433 | MS.gene046074:intron |
GTGCTCTAACATCGGCTTTG+AGG | 0.429741 | 4.4:+56845473 | MS.gene046074:CDS |
TACAATTAAAACAGCCAAAA+CGG | 0.430063 | 4.4:-56844936 | None:intergenic |
AAGGTCAGCTGAAACAGTTT+TGG | 0.431717 | 4.4:-56845861 | None:intergenic |
TATAATGTGTGGGATCTTAT+CGG | 0.438703 | 4.4:+56846762 | MS.gene046074:CDS |
TTTGTTGGCTTCTTGGAAAT+GGG | 0.439029 | 4.4:+56844376 | MS.gene046074:CDS |
CATGCACAAGGAGGAATGAT+TGG | 0.442301 | 4.4:+56845134 | MS.gene046074:CDS |
AAGCTCAAACAAGGTTGATA+AGG | 0.443767 | 4.4:-56845756 | None:intergenic |
ATGCTGCAATAATGGTTTGT+TGG | 0.453042 | 4.4:+56844361 | MS.gene046074:CDS |
TAGTTGGATTTAGCAACATC+TGG | 0.457762 | 4.4:+56845044 | MS.gene046074:intron |
ATTGGTATATGCATAGTTAG+TGG | 0.468620 | 4.4:+56845089 | MS.gene046074:CDS |
TTGTTGTAGTCTTTCCTTGG+CGG | 0.468717 | 4.4:+56845436 | MS.gene046074:intron |
CTAACATTGTCTATATTCCC+TGG | 0.479334 | 4.4:+56846102 | MS.gene046074:CDS |
ACATCTGGTAAAGGAGGGAT+TGG | 0.484610 | 4.4:+56845059 | MS.gene046074:CDS |
GATACCGGAACACACAGTTT+AGG | 0.497923 | 4.4:+56846138 | MS.gene046074:CDS |
GTACTTCTCGAAATGAGGTC+TGG | 0.497951 | 4.4:-56845898 | None:intergenic |
AGCAATTCTTACTTACTATG+AGG | 0.505159 | 4.4:+56844859 | MS.gene046074:CDS |
GGACCTGAACAAAATGCATT+GGG | 0.506071 | 4.4:+56847094 | MS.gene046074:CDS |
GCTAGTGTTCCAACTGCAAA+TGG | 0.506628 | 4.4:-56844839 | None:intergenic |
GGGACCTGAACAAAATGCAT+TGG | 0.516104 | 4.4:+56847093 | MS.gene046074:intron |
ATCACCTCAATTCGTGGTGG+AGG | 0.522623 | 4.4:-56844242 | None:intergenic |
TGCAGAAATATCATCCCTCT+AGG | 0.522851 | 4.4:+56844795 | MS.gene046074:intron |
TGTGCCTAAACTGTGTGTTC+CGG | 0.527489 | 4.4:-56846142 | None:intergenic |
GATTTAGCAACATCTGGTAA+AGG | 0.531613 | 4.4:+56845050 | MS.gene046074:CDS |
GTTCTCACTTCTGCACCTAA+AGG | 0.535854 | 4.4:+56846966 | MS.gene046074:CDS |
AAACCGTACTTCTCGAAATG+AGG | 0.538163 | 4.4:-56845903 | None:intergenic |
CAAAGTATGGTACTCAAGGT+TGG | 0.542078 | 4.4:+56846889 | MS.gene046074:CDS |
TTCTGCACCTAAAGGCTACA+AGG | 0.543449 | 4.4:+56846974 | MS.gene046074:CDS |
ACAGACAGCGAGGTAGCCAT+TGG | 0.547272 | 4.4:-56846943 | None:intergenic |
ATTCTGGATTCATGTATGAC+AGG | 0.549368 | 4.4:-56845160 | None:intergenic |
TGAGCCTCCACCACGAATTG+AGG | 0.549820 | 4.4:+56844238 | MS.gene046074:CDS |
CTGATGCTGCAGCACCGCCA+AGG | 0.552472 | 4.4:-56845450 | None:intergenic |
ATAATGTTGACATCTTTCCT+GGG | 0.552580 | 4.4:+56846915 | MS.gene046074:CDS |
TATGGTTAATAGGTAAAGGA+TGG | 0.554780 | 4.4:+56847176 | MS.gene046074:intron |
AAATTGTCTTAATTCTTCGG+TGG | 0.562541 | 4.4:-56846007 | None:intergenic |
TTTGCAGTGAAATAAAATGC+TGG | 0.563621 | 4.4:-56846870 | None:intergenic |
ATATATATCACCTCAATTCG+TGG | 0.564481 | 4.4:-56844248 | None:intergenic |
GTATATCAGCCATTTGCAGT+TGG | 0.566994 | 4.4:+56844830 | MS.gene046074:CDS |
ACTGCAAAGTATGGTACTCA+AGG | 0.567878 | 4.4:+56846885 | MS.gene046074:CDS |
TTAAGACAATTTGAGCGCAA+AGG | 0.573253 | 4.4:+56846018 | MS.gene046074:CDS |
AGCATCAGGTGCTCTAACAT+CGG | 0.577110 | 4.4:+56845465 | MS.gene046074:CDS |
TAAAACAGCCAAAACGGCCA+AGG | 0.577694 | 4.4:-56844930 | None:intergenic |
TTAGCAACATCTGGTAAAGG+AGG | 0.580672 | 4.4:+56845053 | MS.gene046074:CDS |
AATTGCCATGTATAATGTGT+GGG | 0.581184 | 4.4:+56846752 | MS.gene046074:CDS |
CGTTCAAAAGCAGCATCCGA+AGG | 0.583519 | 4.4:+56845836 | MS.gene046074:CDS |
ATATTTGAAAATTCTAAGGA+CGG | 0.599191 | 4.4:+56845511 | MS.gene046074:CDS |
GGTAGCCATTGGATATCCCC+AGG | 0.599248 | 4.4:-56846932 | None:intergenic |
AAGATCCCACACATTATACA+TGG | 0.604823 | 4.4:-56846757 | None:intergenic |
TCTTTCCTGGGGATATCCAA+TGG | 0.609276 | 4.4:+56846927 | MS.gene046074:CDS |
TAGCAACATCTGGTAAAGGA+GGG | 0.612233 | 4.4:+56845054 | MS.gene046074:CDS |
AACACAAAGAAGCTCAAACA+AGG | 0.615784 | 4.4:-56845765 | None:intergenic |
TTAGCAGATGCTCATGCACA+AGG | 0.620251 | 4.4:+56845122 | MS.gene046074:CDS |
TAATTGCCATGTATAATGTG+TGG | 0.620934 | 4.4:+56846751 | MS.gene046074:CDS |
GCAGAAATATCATCCCTCTA+GGG | 0.623345 | 4.4:+56844796 | MS.gene046074:intron |
GTTCAAAAGCAGCATCCGAA+GGG | 0.625870 | 4.4:+56845837 | MS.gene046074:CDS |
TCTAAGGACGGACTTCGCAA+AGG | 0.638434 | 4.4:+56845523 | MS.gene046074:CDS |
TAATGTTGACATCTTTCCTG+GGG | 0.646765 | 4.4:+56846916 | MS.gene046074:CDS |
TCTGGATTCCAGCTGCAGCA+AGG | 0.649624 | 4.4:-56845880 | None:intergenic |
ACTAGAGTAAGCACCCTAGA+GGG | 0.650173 | 4.4:-56844809 | None:intergenic |
TACTAGAGTAAGCACCCTAG+AGG | 0.657907 | 4.4:-56844810 | None:intergenic |
GAACACACAGTTTAGGCACA+TGG | 0.670795 | 4.4:+56846145 | MS.gene046074:CDS |
TATATCACCTCAATTCGTGG+TGG | 0.676520 | 4.4:-56844245 | None:intergenic |
AAGTGAGAACACAGACAGCG+AGG | 0.688797 | 4.4:-56846953 | None:intergenic |
GCAGATGCTCATGCACAAGG+AGG | 0.707799 | 4.4:+56845125 | MS.gene046074:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAATTGATATTTGAATGTAT+TGG | - | chr4.4:56846486-56846505 | None:intergenic | 15.0% |
!! | AATTGATATTTGAATGTATT+GGG | - | chr4.4:56846485-56846504 | None:intergenic | 15.0% |
!! | TCGTTAGTTATTATTTATTT+CGG | - | chr4.4:56846372-56846391 | None:intergenic | 15.0% |
!! | TTACTATGTTTATTTATTTC+CGG | + | chr4.4:56844437-56844456 | MS.gene046074:CDS | 15.0% |
!!! | AAATTGATTTCTTTTAGTAT+CGG | + | chr4.4:56845647-56845666 | MS.gene046074:intron | 15.0% |
!!! | AATGATATTTTAAGAAGTAA+TGG | + | chr4.4:56846608-56846627 | MS.gene046074:intron | 15.0% |
!! | ACAAAATAAATGAGTGTAAA+AGG | - | chr4.4:56844561-56844580 | None:intergenic | 20.0% |
!! | AGCAATATTTGAAAATTCTA+AGG | + | chr4.4:56845507-56845526 | MS.gene046074:CDS | 20.0% |
!! | ATTTAAATAACTCTAAACCT+CGG | - | chr4.4:56847030-56847049 | None:intergenic | 20.0% |
!! | GAATCAAAATTAACTTTAAC+AGG | - | chr4.4:56844965-56844984 | None:intergenic | 20.0% |
!! | TTGATATTTCCATTTATTAC+AGG | + | chr4.4:56846715-56846734 | MS.gene046074:intron | 20.0% |
!!! | ATATTTGAAAATTCTAAGGA+CGG | + | chr4.4:56845511-56845530 | MS.gene046074:CDS | 20.0% |
!!! | GTATGTTTTTTACTTTTGTA+GGG | + | chr4.4:56847073-56847092 | MS.gene046074:intron | 20.0% |
!!! | TAAATTATTTTGCATTTGCA+GGG | + | chr4.4:56844333-56844352 | MS.gene046074:intron | 20.0% |
!!! | TGTATGTTTTTTACTTTTGT+AGG | + | chr4.4:56847072-56847091 | MS.gene046074:intron | 20.0% |
!!! | TTAAATTATTTTGCATTTGC+AGG | + | chr4.4:56844332-56844351 | MS.gene046074:intron | 20.0% |
! | AATAGTGAAAGATACATTTG+AGG | + | chr4.4:56846416-56846435 | MS.gene046074:intron | 25.0% |
! | ACAATGCTAACTTTGATATT+CGG | + | chr4.4:56845236-56845255 | MS.gene046074:intron | 25.0% |
! | AGGAAATAAGCAATTGTTAT+TGG | + | chr4.4:56846038-56846057 | MS.gene046074:CDS | 25.0% |
! | ATAGTGAAAGATACATTTGA+GGG | + | chr4.4:56846417-56846436 | MS.gene046074:intron | 25.0% |
! | ATATCATTCCAATATCTATC+TGG | - | chr4.4:56846596-56846615 | None:intergenic | 25.0% |
! | ATTCCTTCAAAATTTGCATT+TGG | + | chr4.4:56844981-56845000 | MS.gene046074:intron | 25.0% |
! | ATTTGAATGTATTGGGTATT+AGG | - | chr4.4:56846478-56846497 | None:intergenic | 25.0% |
! | CTCAAATTGTCTTAATTCTT+CGG | - | chr4.4:56846013-56846032 | None:intergenic | 25.0% |
! | GATTAACTAATACACATTTG+AGG | + | chr4.4:56846345-56846364 | MS.gene046074:intron | 25.0% |
! | GTATCTTTCACTATTCAATT+TGG | - | chr4.4:56846411-56846430 | None:intergenic | 25.0% |
! | TAACCAGAGTGAATATTTAA+CGG | - | chr4.4:56844503-56844522 | None:intergenic | 25.0% |
! | TACAATTAAAACAGCCAAAA+CGG | - | chr4.4:56844939-56844958 | None:intergenic | 25.0% |
! | TATCTTCTGATAAAAATCCA+GGG | - | chr4.4:56846122-56846141 | None:intergenic | 25.0% |
! | TGGATATCTTTATGAATTGT+AGG | - | chr4.4:56845675-56845694 | None:intergenic | 25.0% |
! | TTATATAACGATTGCAATTG+CGG | + | chr4.4:56845325-56845344 | MS.gene046074:intron | 25.0% |
! | TTCCTTCAAAATTTGCATTT+GGG | + | chr4.4:56844982-56845001 | MS.gene046074:intron | 25.0% |
!! | ACATATGCAACTCTTTTTAA+AGG | + | chr4.4:56845408-56845427 | MS.gene046074:intron | 25.0% |
!! | CTTTTCTTTTCAATTTCTCA+CGG | + | chr4.4:56845926-56845945 | MS.gene046074:intron | 25.0% |
!! | TACTTCACAATTGGTAATTT+AGG | - | chr4.4:56845812-56845831 | None:intergenic | 25.0% |
!!! | CACTCATTTATTTTGTAATC+TGG | + | chr4.4:56844565-56844584 | MS.gene046074:intron | 25.0% |
!!! | GAAGTATTCTAGTTTCTTAA+AGG | - | chr4.4:56847008-56847027 | None:intergenic | 25.0% |
!!! | GACTAATTTGTGTTTTTTTC+AGG | + | chr4.4:56845984-56846003 | MS.gene046074:intron | 25.0% |
!!! | GTTTTAAACTCAACAGTTTA+TGG | - | chr4.4:56846520-56846539 | None:intergenic | 25.0% |
!!! | TTTTATTTCACTGCAAAGTA+TGG | + | chr4.4:56846876-56846895 | MS.gene046074:CDS | 25.0% |
AAAAGAGTTGCATATGTTGA+AGG | - | chr4.4:56845405-56845424 | None:intergenic | 30.0% | |
AAATGCATTGGGAAATATCT+TGG | + | chr4.4:56847105-56847124 | MS.gene046074:CDS | 30.0% | |
AAATTGTCTTAATTCTTCGG+TGG | - | chr4.4:56846010-56846029 | None:intergenic | 30.0% | |
AATTGCCATGTATAATGTGT+GGG | + | chr4.4:56846752-56846771 | MS.gene046074:CDS | 30.0% | |
ACTGATCAAAATCTTGAAGT+TGG | + | chr4.4:56846797-56846816 | MS.gene046074:CDS | 30.0% | |
AGCAATTCTTACTTACTATG+AGG | + | chr4.4:56844859-56844878 | MS.gene046074:CDS | 30.0% | |
ATAATGTTGACATCTTTCCT+GGG | + | chr4.4:56846915-56846934 | MS.gene046074:CDS | 30.0% | |
ATATATATCACCTCAATTCG+TGG | - | chr4.4:56844251-56844270 | None:intergenic | 30.0% | |
ATATCTCACCAGATAGATAT+TGG | + | chr4.4:56846585-56846604 | MS.gene046074:intron | 30.0% | |
ATGAGGCAAAAATCAATACA+AGG | + | chr4.4:56844876-56844895 | MS.gene046074:CDS | 30.0% | |
ATTGGTATATGCATAGTTAG+TGG | + | chr4.4:56845089-56845108 | MS.gene046074:CDS | 30.0% | |
CAAAAATCAATACAAGGAAG+CGG | + | chr4.4:56844882-56844901 | MS.gene046074:CDS | 30.0% | |
CAAACTGAATCTCAATAGTA+AGG | - | chr4.4:56845957-56845976 | None:intergenic | 30.0% | |
CAATGCTAACTTTGATATTC+GGG | + | chr4.4:56845237-56845256 | MS.gene046074:intron | 30.0% | |
CGAAAATGAAAAACATCTCT+CGG | + | chr4.4:56846288-56846307 | MS.gene046074:intron | 30.0% | |
GTATCTTCTGATAAAAATCC+AGG | - | chr4.4:56846123-56846142 | None:intergenic | 30.0% | |
TAAATATTCACTCTGGTTAG+CGG | + | chr4.4:56844504-56844523 | MS.gene046074:intron | 30.0% | |
TAATTGCCATGTATAATGTG+TGG | + | chr4.4:56846751-56846770 | MS.gene046074:CDS | 30.0% | |
TACAGCAGACATAATAAAAG+TGG | - | chr4.4:56844650-56844669 | None:intergenic | 30.0% | |
TATAATGTGTGGGATCTTAT+CGG | + | chr4.4:56846762-56846781 | MS.gene046074:CDS | 30.0% | |
TATCCGTTAAATATTCACTC+TGG | + | chr4.4:56844497-56844516 | MS.gene046074:intron | 30.0% | |
TATGGTTAATAGGTAAAGGA+TGG | + | chr4.4:56847176-56847195 | MS.gene046074:intron | 30.0% | |
TCAGAAAGTAGATACATTAC+CGG | - | chr4.4:56844459-56844478 | None:intergenic | 30.0% | |
TGGTTATGGTTAATAGGTAA+AGG | + | chr4.4:56847172-56847191 | MS.gene046074:intron | 30.0% | |
TTATTGTTGTAGTCTTTCCT+TGG | + | chr4.4:56845433-56845452 | MS.gene046074:intron | 30.0% | |
TTTGCAGTGAAATAAAATGC+TGG | - | chr4.4:56846873-56846892 | None:intergenic | 30.0% | |
! | AACCCAAATGCAAATTTTGA+AGG | - | chr4.4:56844987-56845006 | None:intergenic | 30.0% |
! | AAGAGCATACCTGTAATAAA+TGG | - | chr4.4:56846727-56846746 | None:intergenic | 30.0% |
! | ATCTTGGTATTGTTTCTTCT+TGG | + | chr4.4:56847121-56847140 | MS.gene046074:CDS | 30.0% |
! | CTTGATTGGTTATGGTTAAT+AGG | + | chr4.4:56847166-56847185 | MS.gene046074:intron | 30.0% |
! | GGATTTTTATCAGAAGATAC+CGG | + | chr4.4:56846123-56846142 | MS.gene046074:CDS | 30.0% |
!! | AACTTCAAGATTTTGATCAG+TGG | - | chr4.4:56846798-56846817 | None:intergenic | 30.0% |
!! | GCATAAAATTGTTTCTGCAT+GGG | - | chr4.4:56845282-56845301 | None:intergenic | 30.0% |
!!! | TATAAAAGTTTTAGACGCCT+CGG | - | chr4.4:56845310-56845329 | None:intergenic | 30.0% |
AACACAAAGAAGCTCAAACA+AGG | - | chr4.4:56845768-56845787 | None:intergenic | 35.0% | |
AACCACGAACAAACGATAAA+AGG | - | chr4.4:56846189-56846208 | None:intergenic | 35.0% | |
AAGAAACTAGAATACTTCCG+AGG | + | chr4.4:56847010-56847029 | MS.gene046074:intron | 35.0% | |
AAGATCCCACACATTATACA+TGG | - | chr4.4:56846760-56846779 | None:intergenic | 35.0% | |
ATCCATGATCATGATTCATG+TGG | + | chr4.4:56845690-56845709 | MS.gene046074:intron | 35.0% | |
ATTCTGGATTCATGTATGAC+AGG | - | chr4.4:56845163-56845182 | None:intergenic | 35.0% | |
CTAACATTGTCTATATTCCC+TGG | + | chr4.4:56846102-56846121 | MS.gene046074:CDS | 35.0% | |
CTGCTCAAAACAACAAAAGT+GGG | + | chr4.4:56846651-56846670 | MS.gene046074:intron | 35.0% | |
GATAATGTTGACATCTTTCC+TGG | + | chr4.4:56846914-56846933 | MS.gene046074:CDS | 35.0% | |
GATGTTGCTAAATCCAACTA+CGG | - | chr4.4:56845044-56845063 | None:intergenic | 35.0% | |
GATTTAGCAACATCTGGTAA+AGG | + | chr4.4:56845050-56845069 | MS.gene046074:CDS | 35.0% | |
GGGAAAATATGCTGCAATAA+TGG | + | chr4.4:56844353-56844372 | MS.gene046074:intron | 35.0% | |
GTCATAAACTTCGACTAAAC+TGG | + | chr4.4:56846215-56846234 | MS.gene046074:intron | 35.0% | |
TAATGTTGACATCTTTCCTG+GGG | + | chr4.4:56846916-56846935 | MS.gene046074:CDS | 35.0% | |
TACCACATGAATCATGATCA+TGG | - | chr4.4:56845695-56845714 | None:intergenic | 35.0% | |
TAGTTGGATTTAGCAACATC+TGG | + | chr4.4:56845044-56845063 | MS.gene046074:intron | 35.0% | |
TCTGCTCAAAACAACAAAAG+TGG | + | chr4.4:56846650-56846669 | MS.gene046074:intron | 35.0% | |
TTAAGACAATTTGAGCGCAA+AGG | + | chr4.4:56846018-56846037 | MS.gene046074:CDS | 35.0% | |
! | AGAAAGTACAAAGAACTGAG+AGG | - | chr4.4:56844716-56844735 | None:intergenic | 35.0% |
! | ATCCTTTTATCGTTTGTTCG+TGG | + | chr4.4:56846184-56846203 | MS.gene046074:intron | 35.0% |
! | ATGCTGCAATAATGGTTTGT+TGG | + | chr4.4:56844361-56844380 | MS.gene046074:CDS | 35.0% |
! | CATGAATCCAGAATTTGTTC+AGG | + | chr4.4:56845169-56845188 | MS.gene046074:CDS | 35.0% |
! | GAAAGTACAAAGAACTGAGA+GGG | - | chr4.4:56844715-56844734 | None:intergenic | 35.0% |
! | GATGATATTTCTGCACAAAG+AGG | - | chr4.4:56844790-56844809 | None:intergenic | 35.0% |
! | TATTTCTGCACAAAGAGGAA+AGG | - | chr4.4:56844785-56844804 | None:intergenic | 35.0% |
! | TGGATACACACTATTTTCCT+TGG | + | chr4.4:56844913-56844932 | MS.gene046074:CDS | 35.0% |
! | TTGGTATTGTTTCTTCTTGG+AGG | + | chr4.4:56847124-56847143 | MS.gene046074:CDS | 35.0% |
! | TTTCCCAATGCATTTTGTTC+AGG | - | chr4.4:56847100-56847119 | None:intergenic | 35.0% |
! | TTTTGATCCCTAAATGTGTG+CGG | + | chr4.4:56846240-56846259 | MS.gene046074:intron | 35.0% |
!! | AAAACAACAAAAGTGGGCTA+AGG | + | chr4.4:56846657-56846676 | MS.gene046074:intron | 35.0% |
!! | AAGCTCAAACAAGGTTGATA+AGG | - | chr4.4:56845759-56845778 | None:intergenic | 35.0% |
!! | ATAATGGTTTGTTGGCTTCT+TGG | + | chr4.4:56844369-56844388 | MS.gene046074:CDS | 35.0% |
!! | GGCATAAAATTGTTTCTGCA+TGG | - | chr4.4:56845283-56845302 | None:intergenic | 35.0% |
!! | TTTGTTGGCTTCTTGGAAAT+GGG | + | chr4.4:56844376-56844395 | MS.gene046074:CDS | 35.0% |
!!! | TTCTTGGAGGTATTTTTGCA+GGG | + | chr4.4:56847137-56847156 | MS.gene046074:CDS | 35.0% |
AAACCGTACTTCTCGAAATG+AGG | - | chr4.4:56845906-56845925 | None:intergenic | 40.0% | |
AAGAACTGCATGAATCAGAG+AGG | - | chr4.4:56845729-56845748 | None:intergenic | 40.0% | |
ACTGCAAAGTATGGTACTCA+AGG | + | chr4.4:56846885-56846904 | MS.gene046074:CDS | 40.0% | |
AGACCTCATTTCGAGAAGTA+CGG | + | chr4.4:56845900-56845919 | MS.gene046074:intron | 40.0% | |
ATGCTGACCTGAACAAATTC+TGG | - | chr4.4:56845179-56845198 | None:intergenic | 40.0% | |
CAAAGTATGGTACTCAAGGT+TGG | + | chr4.4:56846889-56846908 | MS.gene046074:CDS | 40.0% | |
GAACGGTAGTACTTCACAAT+TGG | - | chr4.4:56845821-56845840 | None:intergenic | 40.0% | |
GCAGAAATATCATCCCTCTA+GGG | + | chr4.4:56844796-56844815 | MS.gene046074:intron | 40.0% | |
GGACCTGAACAAAATGCATT+GGG | + | chr4.4:56847094-56847113 | MS.gene046074:CDS | 40.0% | |
GTATATCAGCCATTTGCAGT+TGG | + | chr4.4:56844830-56844849 | MS.gene046074:CDS | 40.0% | |
TAGCAACATCTGGTAAAGGA+GGG | + | chr4.4:56845054-56845073 | MS.gene046074:CDS | 40.0% | |
TATATCACCTCAATTCGTGG+TGG | - | chr4.4:56844248-56844267 | None:intergenic | 40.0% | |
TGCAGAAATATCATCCCTCT+AGG | + | chr4.4:56844795-56844814 | MS.gene046074:intron | 40.0% | |
TGCATAGTTAGTGGTGCATT+TGG | + | chr4.4:56845098-56845117 | MS.gene046074:CDS | 40.0% | |
TTAGCAACATCTGGTAAAGG+AGG | + | chr4.4:56845053-56845072 | MS.gene046074:CDS | 40.0% | |
TTCTTCACCTTGTAGCCTTT+AGG | - | chr4.4:56846984-56847003 | None:intergenic | 40.0% | |
TTGTTGTAGTCTTTCCTTGG+CGG | + | chr4.4:56845436-56845455 | MS.gene046074:intron | 40.0% | |
! | AAGGTCAGCTGAAACAGTTT+TGG | - | chr4.4:56845864-56845883 | None:intergenic | 40.0% |
! | ACAAGGAAGCGGATTCTATT+TGG | + | chr4.4:56844893-56844912 | MS.gene046074:CDS | 40.0% |
! | ACAATTTTATGCCTTTGCCG+AGG | + | chr4.4:56845290-56845309 | MS.gene046074:intron | 40.0% |
! | ACTATTTTCCTTGGCCGTTT+TGG | + | chr4.4:56844922-56844941 | MS.gene046074:CDS | 40.0% |
! | GAAATGGGTGTCTTTTCTCT+TGG | + | chr4.4:56844391-56844410 | MS.gene046074:CDS | 40.0% |
! | GGGTAACACTTGATTGGTTA+TGG | + | chr4.4:56847158-56847177 | MS.gene046074:intron | 40.0% |
!! | GTTTGTTGGCTTCTTGGAAA+TGG | + | chr4.4:56844375-56844394 | MS.gene046074:CDS | 40.0% |
!!! | CTTCTTGGAGGTATTTTTGC+AGG | + | chr4.4:56847136-56847155 | MS.gene046074:CDS | 40.0% |
!!! | TCTTGGAGGTATTTTTGCAG+GGG | + | chr4.4:56847138-56847157 | MS.gene046074:CDS | 40.0% |
!!! | TGAAACAGTTTTGGACCCTT+CGG | - | chr4.4:56845855-56845874 | None:intergenic | 40.0% |
AATGTGTGCGGTGGATACTA+TGG | + | chr4.4:56846252-56846271 | MS.gene046074:intron | 45.0% | |
ACATCTGGTAAAGGAGGGAT+TGG | + | chr4.4:56845059-56845078 | MS.gene046074:CDS | 45.0% | |
ACCTATTTACGTGCCGTAGT+TGG | + | chr4.4:56845028-56845047 | MS.gene046074:intron | 45.0% | |
ACTAGAGTAAGCACCCTAGA+GGG | - | chr4.4:56844812-56844831 | None:intergenic | 45.0% | |
AGCATCAGGTGCTCTAACAT+CGG | + | chr4.4:56845465-56845484 | MS.gene046074:CDS | 45.0% | |
AGTATCCACCGCACACATTT+AGG | - | chr4.4:56846251-56846270 | None:intergenic | 45.0% | |
CATGCACAAGGAGGAATGAT+TGG | + | chr4.4:56845134-56845153 | MS.gene046074:CDS | 45.0% | |
GAACACACAGTTTAGGCACA+TGG | + | chr4.4:56846145-56846164 | MS.gene046074:CDS | 45.0% | |
GATACCGGAACACACAGTTT+AGG | + | chr4.4:56846138-56846157 | MS.gene046074:CDS | 45.0% | |
GCTAGTGTTCCAACTGCAAA+TGG | - | chr4.4:56844842-56844861 | None:intergenic | 45.0% | |
GCTGTAATACTCTTCTCGAG+CGG | + | chr4.4:56844664-56844683 | MS.gene046074:intron | 45.0% | |
GGAGGGATTGGAACATTCAT+TGG | + | chr4.4:56845071-56845090 | MS.gene046074:CDS | 45.0% | |
GGGACCTGAACAAAATGCAT+TGG | + | chr4.4:56847093-56847112 | MS.gene046074:intron | 45.0% | |
GTACTTCTCGAAATGAGGTC+TGG | - | chr4.4:56845901-56845920 | None:intergenic | 45.0% | |
GTATCCACCGCACACATTTA+GGG | - | chr4.4:56846250-56846269 | None:intergenic | 45.0% | |
GTATGTTGCAGCTGTCTGTT+GGG | + | chr4.4:56844606-56844625 | MS.gene046074:intron | 45.0% | |
GTTCAAAAGCAGCATCCGAA+GGG | + | chr4.4:56845837-56845856 | MS.gene046074:CDS | 45.0% | |
GTTCAGGTCAGCATCATCAA+TGG | + | chr4.4:56845185-56845204 | MS.gene046074:intron | 45.0% | |
GTTCTCACTTCTGCACCTAA+AGG | + | chr4.4:56846966-56846985 | MS.gene046074:CDS | 45.0% | |
TAAAACAGCCAAAACGGCCA+AGG | - | chr4.4:56844933-56844952 | None:intergenic | 45.0% | |
TACTAGAGTAAGCACCCTAG+AGG | - | chr4.4:56844813-56844832 | None:intergenic | 45.0% | |
TCCAACTACGGCACGTAAAT+AGG | - | chr4.4:56845032-56845051 | None:intergenic | 45.0% | |
TCTTTCCTGGGGATATCCAA+TGG | + | chr4.4:56846927-56846946 | MS.gene046074:CDS | 45.0% | |
TGTGCCTAAACTGTGTGTTC+CGG | - | chr4.4:56846145-56846164 | None:intergenic | 45.0% | |
TTAGCAGATGCTCATGCACA+AGG | + | chr4.4:56845122-56845141 | MS.gene046074:CDS | 45.0% | |
TTCTGCACCTAAAGGCTACA+AGG | + | chr4.4:56846974-56846993 | MS.gene046074:CDS | 45.0% | |
TTGCAGGGGTAACACTTGAT+TGG | + | chr4.4:56847152-56847171 | MS.gene046074:intron | 45.0% | |
! | CTGGTTCGTTATGATGCTTG+CGG | + | chr4.4:56844535-56844554 | MS.gene046074:intron | 45.0% |
!!! | CTGGTTTTAAGCCCTGCTTT+GGG | + | chr4.4:56844584-56844603 | MS.gene046074:intron | 45.0% |
!!! | CTTCGGATGCTGCTTTTGAA+CGG | - | chr4.4:56845838-56845857 | None:intergenic | 45.0% |
!!! | TCTGGTTTTAAGCCCTGCTT+TGG | + | chr4.4:56844583-56844602 | MS.gene046074:intron | 45.0% |
AAGTGAGAACACAGACAGCG+AGG | - | chr4.4:56846956-56846975 | None:intergenic | 50.0% | |
AGCTGCAACATACCCAAAGC+AGG | - | chr4.4:56844599-56844618 | None:intergenic | 50.0% | |
ATCACCTCAATTCGTGGTGG+AGG | - | chr4.4:56844245-56844264 | None:intergenic | 50.0% | |
CAGCACTCTGATGCTTAGCA+TGG | + | chr4.4:56845558-56845577 | MS.gene046074:intron | 50.0% | |
CGTTCAAAAGCAGCATCCGA+AGG | + | chr4.4:56845836-56845855 | MS.gene046074:CDS | 50.0% | |
CTGGTTAGCGGTGATATCTC+TGG | + | chr4.4:56844516-56844535 | MS.gene046074:intron | 50.0% | |
GCTGCAACATACCCAAAGCA+GGG | - | chr4.4:56844598-56844617 | None:intergenic | 50.0% | |
GGTATGTTGCAGCTGTCTGT+TGG | + | chr4.4:56844605-56844624 | MS.gene046074:intron | 50.0% | |
TGATCCCTAAATGTGTGCGG+TGG | + | chr4.4:56846243-56846262 | MS.gene046074:intron | 50.0% | |
! | TCTAAGGACGGACTTCGCAA+AGG | + | chr4.4:56845523-56845542 | MS.gene046074:CDS | 50.0% |
! | TCTCTCGGTGTATGTCTCGT+TGG | + | chr4.4:56846303-56846322 | MS.gene046074:intron | 50.0% |
!! | CTCGAGCGGACTATTTGGTT+GGG | + | chr4.4:56844678-56844697 | MS.gene046074:intron | 50.0% |
!! | CTCTTCTCGAGCGGACTATT+TGG | + | chr4.4:56844673-56844692 | MS.gene046074:intron | 50.0% |
!! | GTGCTCTAACATCGGCTTTG+AGG | + | chr4.4:56845473-56845492 | MS.gene046074:CDS | 50.0% |
!! | TCTCGAGCGGACTATTTGGT+TGG | + | chr4.4:56844677-56844696 | MS.gene046074:intron | 50.0% |
!!! | AGTTTTAGACGCCTCGGCAA+AGG | - | chr4.4:56845304-56845323 | None:intergenic | 50.0% |
ACAGACAGCGAGGTAGCCAT+TGG | - | chr4.4:56846946-56846965 | None:intergenic | 55.0% | |
GCAGATGCTCATGCACAAGG+AGG | + | chr4.4:56845125-56845144 | MS.gene046074:CDS | 55.0% | |
GGTAGCCATTGGATATCCCC+AGG | - | chr4.4:56846935-56846954 | None:intergenic | 55.0% | |
TCTGGATTCCAGCTGCAGCA+AGG | - | chr4.4:56845883-56845902 | None:intergenic | 55.0% | |
TGAGCCTCCACCACGAATTG+AGG | + | chr4.4:56844238-56844257 | MS.gene046074:CDS | 55.0% | |
TCAGCTGACCTTGCTGCAGC+TGG | + | chr4.4:56845872-56845891 | MS.gene046074:CDS | 60.0% | |
! | GAACTGAGAGGGCGTAAGCC+TGG | - | chr4.4:56844704-56844723 | None:intergenic | 60.0% |
! | GCGGACTATTTGGTTGGGCC+AGG | + | chr4.4:56844683-56844702 | MS.gene046074:intron | 60.0% |
CTGATGCTGCAGCACCGCCA+AGG | - | chr4.4:56845453-56845472 | None:intergenic | 65.0% | |
!! | CTTGGCGGTGCTGCAGCATC+AGG | + | chr4.4:56845451-56845470 | MS.gene046074:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.4 | gene | 56844227 | 56847223 | 56844227 | ID=MS.gene046074 |
chr4.4 | mRNA | 56844227 | 56847223 | 56844227 | ID=MS.gene046074.t1;Parent=MS.gene046074 |
chr4.4 | exon | 56844227 | 56844259 | 56844227 | ID=MS.gene046074.t1.exon1;Parent=MS.gene046074.t1 |
chr4.4 | CDS | 56844227 | 56844259 | 56844227 | ID=cds.MS.gene046074.t1;Parent=MS.gene046074.t1 |
chr4.4 | exon | 56844354 | 56844458 | 56844354 | ID=MS.gene046074.t1.exon2;Parent=MS.gene046074.t1 |
chr4.4 | CDS | 56844354 | 56844458 | 56844354 | ID=cds.MS.gene046074.t1;Parent=MS.gene046074.t1 |
chr4.4 | exon | 56844800 | 56844955 | 56844800 | ID=MS.gene046074.t1.exon3;Parent=MS.gene046074.t1 |
chr4.4 | CDS | 56844800 | 56844955 | 56844800 | ID=cds.MS.gene046074.t1;Parent=MS.gene046074.t1 |
chr4.4 | exon | 56845047 | 56845190 | 56845047 | ID=MS.gene046074.t1.exon4;Parent=MS.gene046074.t1 |
chr4.4 | CDS | 56845047 | 56845190 | 56845047 | ID=cds.MS.gene046074.t1;Parent=MS.gene046074.t1 |
chr4.4 | exon | 56845445 | 56845550 | 56845445 | ID=MS.gene046074.t1.exon5;Parent=MS.gene046074.t1 |
chr4.4 | CDS | 56845445 | 56845550 | 56845445 | ID=cds.MS.gene046074.t1;Parent=MS.gene046074.t1 |
chr4.4 | exon | 56845744 | 56845916 | 56845744 | ID=MS.gene046074.t1.exon6;Parent=MS.gene046074.t1 |
chr4.4 | CDS | 56845744 | 56845916 | 56845744 | ID=cds.MS.gene046074.t1;Parent=MS.gene046074.t1 |
chr4.4 | exon | 56846006 | 56846166 | 56846006 | ID=MS.gene046074.t1.exon7;Parent=MS.gene046074.t1 |
chr4.4 | CDS | 56846006 | 56846166 | 56846006 | ID=cds.MS.gene046074.t1;Parent=MS.gene046074.t1 |
chr4.4 | exon | 56846737 | 56846995 | 56846737 | ID=MS.gene046074.t1.exon8;Parent=MS.gene046074.t1 |
chr4.4 | CDS | 56846737 | 56846995 | 56846737 | ID=cds.MS.gene046074.t1;Parent=MS.gene046074.t1 |
chr4.4 | exon | 56847094 | 56847159 | 56847094 | ID=MS.gene046074.t1.exon9;Parent=MS.gene046074.t1 |
chr4.4 | CDS | 56847094 | 56847159 | 56847094 | ID=cds.MS.gene046074.t1;Parent=MS.gene046074.t1 |
chr4.4 | exon | 56847188 | 56847223 | 56847188 | ID=MS.gene046074.t1.exon10;Parent=MS.gene046074.t1 |
chr4.4 | CDS | 56847188 | 56847223 | 56847188 | ID=cds.MS.gene046074.t1;Parent=MS.gene046074.t1 |
Gene Sequence |
Protein sequence |