Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029299.t1 | XP_013470314.1 | 97.1 | 315 | 9 | 0 | 1 | 315 | 1 | 315 | 2.50E-171 | 611.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029299.t1 | Q9C9X3 | 55.2 | 317 | 137 | 2 | 1 | 314 | 1 | 315 | 1.3e-94 | 347.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029299.t1 | A0A072VRI5 | 97.1 | 315 | 9 | 0 | 1 | 315 | 1 | 315 | 1.8e-171 | 611.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene28077 | MS.gene029299 | PPI |
| MS.gene029299 | MS.gene035891 | PPI |
| MS.gene029299 | MS.gene030809 | PPI |
| MS.gene029299 | MS.gene043964 | PPI |
| MS.gene57291 | MS.gene029299 | PPI |
| MS.gene45772 | MS.gene029299 | PPI |
| MS.gene061777 | MS.gene029299 | PPI |
| MS.gene056195 | MS.gene029299 | PPI |
| MS.gene029299 | MS.gene55897 | PPI |
| MS.gene029299 | MS.gene00058 | PPI |
| MS.gene029299 | MS.gene89484 | PPI |
| MS.gene029299 | MS.gene058336 | PPI |
| MS.gene029299 | MS.gene010215 | PPI |
| MS.gene029299 | MS.gene67887 | PPI |
| MS.gene016642 | MS.gene029299 | PPI |
| MS.gene029299 | MS.gene92405 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029299.t1 | MTR_1g112520 | 97.143 | 315 | 9 | 0 | 1 | 315 | 1 | 315 | 0.0 | 639 |
| MS.gene029299.t1 | MTR_6g071615 | 91.746 | 315 | 26 | 0 | 1 | 315 | 1 | 315 | 0.0 | 588 |
| MS.gene029299.t1 | MTR_6g071605 | 88.254 | 315 | 37 | 0 | 1 | 315 | 1 | 315 | 0.0 | 583 |
| MS.gene029299.t1 | MTR_6g071595 | 90.794 | 315 | 29 | 0 | 1 | 315 | 1 | 315 | 0.0 | 559 |
| MS.gene029299.t1 | MTR_8g107640 | 78.662 | 314 | 67 | 0 | 1 | 314 | 1 | 314 | 0.0 | 533 |
| MS.gene029299.t1 | MTR_6g071595 | 89.200 | 250 | 27 | 0 | 1 | 250 | 1 | 250 | 1.27e-161 | 451 |
| MS.gene029299.t1 | MTR_1g033560 | 60.063 | 318 | 121 | 3 | 1 | 315 | 1 | 315 | 5.75e-138 | 393 |
| MS.gene029299.t1 | MTR_8g038150 | 38.486 | 317 | 188 | 3 | 1 | 312 | 1 | 315 | 7.24e-72 | 225 |
| MS.gene029299.t1 | MTR_3g018780 | 37.778 | 315 | 193 | 3 | 1 | 314 | 1 | 313 | 2.91e-69 | 218 |
| MS.gene029299.t1 | MTR_8g038180 | 37.975 | 316 | 193 | 3 | 1 | 315 | 1 | 314 | 2.97e-68 | 216 |
| MS.gene029299.t1 | MTR_8g038220 | 37.580 | 314 | 191 | 4 | 1 | 312 | 1 | 311 | 9.42e-68 | 214 |
| MS.gene029299.t1 | MTR_8g038220 | 37.580 | 314 | 190 | 4 | 1 | 312 | 1 | 310 | 1.32e-67 | 214 |
| MS.gene029299.t1 | MTR_5g063670 | 37.304 | 319 | 190 | 5 | 1 | 314 | 1 | 314 | 4.11e-67 | 213 |
| MS.gene029299.t1 | MTR_3g018790 | 38.339 | 313 | 190 | 3 | 1 | 312 | 1 | 311 | 5.84e-67 | 212 |
| MS.gene029299.t1 | MTR_0276s0050 | 37.261 | 314 | 193 | 3 | 1 | 312 | 1 | 312 | 3.70e-65 | 207 |
| MS.gene029299.t1 | MTR_2g031980 | 36.306 | 314 | 195 | 4 | 1 | 312 | 1 | 311 | 2.16e-64 | 206 |
| MS.gene029299.t1 | MTR_8g038210 | 35.577 | 312 | 199 | 2 | 1 | 312 | 1 | 310 | 5.16e-61 | 197 |
| MS.gene029299.t1 | MTR_8g038210 | 35.144 | 313 | 201 | 2 | 1 | 313 | 1 | 311 | 8.10e-60 | 194 |
| MS.gene029299.t1 | MTR_3g018790 | 33.610 | 241 | 158 | 2 | 74 | 313 | 19 | 258 | 1.26e-40 | 142 |
| MS.gene029299.t1 | MTR_6g028030 | 32.117 | 274 | 178 | 5 | 45 | 310 | 34 | 307 | 5.00e-40 | 142 |
| MS.gene029299.t1 | MTR_8g038170 | 30.195 | 308 | 190 | 6 | 22 | 312 | 12 | 311 | 4.87e-36 | 132 |
| MS.gene029299.t1 | MTR_8g038170 | 30.195 | 308 | 190 | 6 | 22 | 312 | 12 | 311 | 4.87e-36 | 132 |
| MS.gene029299.t1 | MTR_3g018920 | 33.491 | 212 | 108 | 3 | 1 | 212 | 1 | 179 | 1.55e-29 | 111 |
| MS.gene029299.t1 | MTR_3g018925 | 43.478 | 92 | 52 | 0 | 222 | 313 | 16 | 107 | 2.03e-17 | 77.0 |
| MS.gene029299.t1 | MTR_8g038090 | 46.377 | 69 | 36 | 1 | 245 | 312 | 22 | 90 | 3.02e-12 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029299.t1 | AT1G68090 | 55.205 | 317 | 137 | 2 | 1 | 314 | 1 | 315 | 1.07e-127 | 367 |
| MS.gene029299.t1 | AT1G68090 | 52.381 | 252 | 115 | 2 | 1 | 249 | 1 | 250 | 1.15e-91 | 273 |
| MS.gene029299.t1 | AT1G68090 | 26.291 | 213 | 136 | 5 | 108 | 311 | 37 | 237 | 3.03e-16 | 77.4 |
| MS.gene029299.t1 | AT5G10230 | 40.190 | 316 | 187 | 2 | 1 | 315 | 1 | 315 | 3.32e-79 | 244 |
| MS.gene029299.t1 | AT5G65020 | 41.270 | 315 | 180 | 4 | 1 | 312 | 1 | 313 | 9.14e-78 | 240 |
| MS.gene029299.t1 | AT5G10220 | 39.308 | 318 | 189 | 3 | 1 | 315 | 1 | 317 | 1.18e-77 | 240 |
| MS.gene029299.t1 | AT1G35720 | 38.245 | 319 | 188 | 4 | 1 | 314 | 1 | 315 | 1.69e-69 | 219 |
| MS.gene029299.t1 | AT5G12380 | 36.909 | 317 | 189 | 5 | 1 | 312 | 1 | 311 | 3.82e-67 | 213 |
| MS.gene029299.t1 | AT5G65020 | 40.000 | 290 | 169 | 4 | 26 | 312 | 11 | 298 | 6.99e-67 | 212 |
| MS.gene029299.t1 | AT2G38760 | 34.169 | 319 | 202 | 3 | 1 | 312 | 1 | 318 | 2.11e-57 | 188 |
| MS.gene029299.t1 | AT2G38750 | 31.190 | 311 | 181 | 11 | 26 | 314 | 2 | 301 | 1.63e-32 | 122 |
| MS.gene029299.t1 | AT2G38750 | 31.190 | 311 | 181 | 11 | 26 | 314 | 19 | 318 | 1.83e-32 | 122 |
Find 69 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACTCCTTTCACTGAATATT+TGG | 0.107454 | 1.4:+86417665 | None:intergenic |
| TATAAGGCAATGAAAGGTTT+AGG | 0.249516 | 1.4:-86416625 | MS.gene029299:CDS |
| CAGTTATACCATTCAAAGTT+TGG | 0.326253 | 1.4:-86418412 | MS.gene029299:CDS |
| AAAACATCTTGACTAATGAT+TGG | 0.345482 | 1.4:+86416438 | None:intergenic |
| AATGAAGCTTCAGGGAATTT+CGG | 0.347354 | 1.4:-86417490 | MS.gene029299:CDS |
| ACCTTTGCAAAATACTTTCC+TGG | 0.349017 | 1.4:+86417430 | None:intergenic |
| AACCATGCAGGTATTGTATA+AGG | 0.355765 | 1.4:-86416641 | MS.gene029299:intron |
| GAAGTCAAATCAAACACTTC+GGG | 0.366848 | 1.4:-86418373 | MS.gene029299:CDS |
| TGAAAGGAGTGCCGCACATT+TGG | 0.368181 | 1.4:-86417653 | MS.gene029299:CDS |
| AAAATACTTTCCTGGATTAG+TGG | 0.371943 | 1.4:+86417438 | None:intergenic |
| GCAGTAAAGAATGAAGCTTC+AGG | 0.375034 | 1.4:-86417499 | MS.gene029299:CDS |
| ATAAGGCAATGAAAGGTTTA+GGG | 0.382653 | 1.4:-86416624 | MS.gene029299:CDS |
| AAACATCTTGACTAATGATT+GGG | 0.384346 | 1.4:+86416439 | None:intergenic |
| GGAGCTGAGTGGAAAGTTAG+AGG | 0.411832 | 1.4:-86418954 | MS.gene029299:intron |
| TTCAGACTGCTGTTCTACTT+TGG | 0.419993 | 1.4:-86418558 | MS.gene029299:intron |
| CTAATGATAACACGCTGATA+AGG | 0.423632 | 1.4:-86416600 | MS.gene029299:CDS |
| ATGTTGTTCGATATTCTTGT+TGG | 0.429076 | 1.4:+86419008 | None:intergenic |
| TCTTATTATCATGACATGTA+TGG | 0.429350 | 1.4:-86417619 | MS.gene029299:CDS |
| GCTTTCGAAACGCTTGGTTT+CGG | 0.430820 | 1.4:-86418975 | MS.gene029299:CDS |
| TTACTTCGGTAGCAGCTTCA+AGG | 0.438270 | 1.4:+86418473 | None:intergenic |
| GCAATTTCTCTATTAACCTC+AGG | 0.450053 | 1.4:+86417757 | None:intergenic |
| CCTCAGGGCCTTCGTGGCGA+GGG | 0.459091 | 1.4:+86417773 | None:intergenic |
| GATAAACTCCAAACTTTGAA+TGG | 0.459814 | 1.4:+86418404 | None:intergenic |
| TAATGATAACACGCTGATAA+GGG | 0.464492 | 1.4:-86416599 | MS.gene029299:CDS |
| ACCTCAGGGCCTTCGTGGCG+AGG | 0.470530 | 1.4:+86417772 | None:intergenic |
| GCAGTTCACTCTGAAACATC+TGG | 0.476823 | 1.4:-86416496 | MS.gene029299:CDS |
| GACGTGATGTGGAAATCATC+AGG | 0.480749 | 1.4:-86418519 | MS.gene029299:CDS |
| ATTTCCACATCACGTCCTGC+AGG | 0.480920 | 1.4:+86418526 | None:intergenic |
| ATCCAATGTGCCACTAATCC+AGG | 0.481177 | 1.4:-86417448 | MS.gene029299:CDS |
| ACATCACGTCCTGCAGGGTC+AGG | 0.483921 | 1.4:+86418532 | None:intergenic |
| TTTAGATATTGTAGTTGGGA+TGG | 0.486564 | 1.4:+86418436 | None:intergenic |
| TCGATATTCTTGTTGGATGT+AGG | 0.488103 | 1.4:+86419015 | None:intergenic |
| TAATAGAGAAATTGCTGAGA+AGG | 0.492113 | 1.4:-86417749 | MS.gene029299:CDS |
| CAACTTTACCGTGCTTTCAA+AGG | 0.494780 | 1.4:-86419971 | MS.gene029299:intron |
| TTGTCCAAATATTCAGTGAA+AGG | 0.504472 | 1.4:-86417669 | MS.gene029299:CDS |
| CAGTAAAGAATGAAGCTTCA+GGG | 0.507933 | 1.4:-86417498 | MS.gene029299:CDS |
| CTTTGGATGCCTGACCCTGC+AGG | 0.523684 | 1.4:-86418541 | MS.gene029299:CDS |
| AGAGGAGCTTTCGAAACGCT+TGG | 0.524295 | 1.4:-86418981 | MS.gene029299:CDS |
| TGAAGTCAAATCAAACACTT+CGG | 0.531066 | 1.4:-86418374 | MS.gene029299:CDS |
| TATTAACCTCAGGGCCTTCG+TGG | 0.534153 | 1.4:+86417767 | None:intergenic |
| CTGAAACATCTGGCAACTAC+AGG | 0.542743 | 1.4:-86416486 | MS.gene029299:CDS |
| AGTTGCATCGCATCATCTCT+AGG | 0.551159 | 1.4:+86419989 | None:intergenic |
| CGCATCATCTCTAGGAGAAG+GGG | 0.552806 | 1.4:+86419997 | None:intergenic |
| TCGCATCATCTCTAGGAGAA+GGG | 0.556950 | 1.4:+86419996 | None:intergenic |
| TTCCTGGATTAGTGGCACAT+TGG | 0.563028 | 1.4:+86417446 | None:intergenic |
| CATCAGGAAGTCTCTAGTTG+TGG | 0.566789 | 1.4:-86418503 | MS.gene029299:CDS |
| ATCGCATCATCTCTAGGAGA+AGG | 0.567055 | 1.4:+86419995 | None:intergenic |
| GCAAAGGTTCTCTACAAAGC+GGG | 0.570145 | 1.4:-86417724 | MS.gene029299:CDS |
| CTCAGGGCCTTCGTGGCGAG+GGG | 0.572201 | 1.4:+86417774 | None:intergenic |
| GTAGAAGAAGATGGCTACAC+TGG | 0.572744 | 1.4:-86420035 | None:intergenic |
| TGCAAAGGTTCTCTACAAAG+CGG | 0.594581 | 1.4:-86417725 | MS.gene029299:CDS |
| CAATTTCTCTATTAACCTCA+GGG | 0.596064 | 1.4:+86417758 | None:intergenic |
| GTATGGTCACTCATTGAAGA+AGG | 0.597830 | 1.4:-86417602 | MS.gene029299:intron |
| AGAGGGTACCTTTGAAAGCA+CGG | 0.601480 | 1.4:+86419963 | None:intergenic |
| TGACCCTGCAGGACGTGATG+TGG | 0.603910 | 1.4:-86418530 | MS.gene029299:CDS |
| GTATTGTATAAGGCAATGAA+AGG | 0.612404 | 1.4:-86416631 | MS.gene029299:CDS |
| AATTGCTGAGAAGGATGCAA+AGG | 0.621549 | 1.4:-86417740 | MS.gene029299:CDS |
| CCCTCGCCACGAAGGCCCTG+AGG | 0.636025 | 1.4:-86417773 | MS.gene029299:CDS |
| AAGTCAAATCAAACACTTCG+GGG | 0.641575 | 1.4:-86418372 | MS.gene029299:CDS |
| TTTCCACATCACGTCCTGCA+GGG | 0.641940 | 1.4:+86418527 | None:intergenic |
| CGCTTGGTTTCGGAGCTGAG+TGG | 0.675769 | 1.4:-86418965 | MS.gene029299:CDS |
| ACTGACTGCAGCCAAATGTG+CGG | 0.677644 | 1.4:+86417642 | None:intergenic |
| AGTGCGTGAACAGATTACTT+CGG | 0.681370 | 1.4:+86418459 | None:intergenic |
| TGATAAGGGTAATTGTAACA+AGG | 0.683491 | 1.4:-86416585 | MS.gene029299:CDS |
| GCATCATCTCTAGGAGAAGG+GGG | 0.685619 | 1.4:+86419998 | None:intergenic |
| AAAGCGGGTGAAAAGAAACT+CGG | 0.691984 | 1.4:-86417709 | MS.gene029299:CDS |
| AGTCAAATCAAACACTTCGG+GGG | 0.699436 | 1.4:-86418371 | MS.gene029299:CDS |
| GTAAGTACCCCTCGCCACGA+AGG | 0.701381 | 1.4:-86417781 | MS.gene029299:CDS |
| ATATCGAACAACATACTCAG+AGG | 0.713202 | 1.4:-86418999 | MS.gene029299:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTCAATTTTATAAATGATT+AGG | + | chr1.4:86417019-86417038 | None:intergenic | 10.0% |
| !!! | TTCAATTTTATAAATGATTA+GGG | + | chr1.4:86417018-86417037 | None:intergenic | 10.0% |
| !! | ATAGAATTAGAATGAAATAA+AGG | + | chr1.4:86417367-86417386 | None:intergenic | 15.0% |
| !! | TCTTTATACAAAGAATATTT+CGG | + | chr1.4:86417304-86417323 | None:intergenic | 15.0% |
| !! | TTTATTTCATTCTAATTCTA+TGG | - | chr1.4:86417366-86417385 | MS.gene029299:intron | 15.0% |
| !!! | AATTCATTAAAATTTTGTGT+GGG | - | chr1.4:86419457-86419476 | MS.gene029299:intron | 15.0% |
| !!! | ACACAAAATTTTAATGAATT+AGG | + | chr1.4:86419457-86419476 | None:intergenic | 15.0% |
| !!! | ATTTAAATTTGTGTAACTTT+TGG | - | chr1.4:86419522-86419541 | MS.gene029299:intron | 15.0% |
| !!! | TAATTCATTAAAATTTTGTG+TGG | - | chr1.4:86419456-86419475 | MS.gene029299:intron | 15.0% |
| !! | AAATAACAGAAATTTAGAGA+TGG | - | chr1.4:86418271-86418290 | MS.gene029299:intron | 20.0% |
| !! | AGAGATGGAAAAAATAAAAT+TGG | + | chr1.4:86418338-86418357 | None:intergenic | 20.0% |
| !! | GGAAAATTAAGACATTTAAA+AGG | + | chr1.4:86419782-86419801 | None:intergenic | 20.0% |
| !! | TATAATCAGAAGAATATGAT+AGG | + | chr1.4:86418218-86418237 | None:intergenic | 20.0% |
| !! | TTAGATGAAAAATACTAATG+TGG | + | chr1.4:86417227-86417246 | None:intergenic | 20.0% |
| !! | TTCTAGATTCAAAATGTTAA+AGG | - | chr1.4:86418421-86418440 | MS.gene029299:CDS | 20.0% |
| !! | TTGTCAAACTTAATATTACA+AGG | - | chr1.4:86416932-86416951 | MS.gene029299:intron | 20.0% |
| !!! | AAACAAGTTTTTTGCATAAA+TGG | + | chr1.4:86418657-86418676 | None:intergenic | 20.0% |
| !!! | AATATACAAATTTTGTGCAT+AGG | + | chr1.4:86419803-86419822 | None:intergenic | 20.0% |
| !!! | TAAACTAAGAGCTTTTTAAT+TGG | + | chr1.4:86419208-86419227 | None:intergenic | 20.0% |
| !!! | TTCAACTTTTTCTGATAATA+AGG | - | chr1.4:86418373-86418392 | MS.gene029299:CDS | 20.0% |
| ! | AATGAGTTAGCTAATACATT+TGG | + | chr1.4:86419505-86419524 | None:intergenic | 25.0% |
| ! | AGAATGAAATAAAGGTTTCA+TGG | + | chr1.4:86417359-86417378 | None:intergenic | 25.0% |
| ! | ATAACAACAGAAATTAGAGA+TGG | + | chr1.4:86418353-86418372 | None:intergenic | 25.0% |
| ! | ATGACAAATTAGTCACATTA+TGG | - | chr1.4:86418187-86418206 | MS.gene029299:intron | 25.0% |
| ! | CATTATCATGAAAGCAATAA+AGG | + | chr1.4:86418513-86418532 | None:intergenic | 25.0% |
| ! | CTAATTTCATTCCACAAAAT+CGG | - | chr1.4:86416670-86416689 | MS.gene029299:intron | 25.0% |
| ! | CTACTACTACTACAATATTT+AGG | + | chr1.4:86416795-86416814 | None:intergenic | 25.0% |
| ! | CTCTTATTAGAAATAAGAGA+AGG | + | chr1.4:86419393-86419412 | None:intergenic | 25.0% |
| ! | GACTGAAAATTGCATTAATT+TGG | - | chr1.4:86417069-86417088 | MS.gene029299:intron | 25.0% |
| ! | GTATAAAGAGATTACTTGTA+AGG | - | chr1.4:86417315-86417334 | MS.gene029299:intron | 25.0% |
| ! | GTCTCAAGTTTATAAAACAA+AGG | - | chr1.4:86418545-86418564 | MS.gene029299:CDS | 25.0% |
| ! | GTTATTGAACACAAAAATTG+TGG | + | chr1.4:86419105-86419124 | None:intergenic | 25.0% |
| ! | TCTTATTATCATGACATGTA+TGG | - | chr1.4:86418856-86418875 | MS.gene029299:intron | 25.0% |
| ! | TTAAATCATAGACAGTTCAT+AGG | - | chr1.4:86418448-86418467 | MS.gene029299:CDS | 25.0% |
| !! | AAAAAGTGTACTTCAATATG+TGG | - | chr1.4:86417259-86417278 | MS.gene029299:intron | 25.0% |
| !! | AGAGAGTACGTAATATAAAA+AGG | + | chr1.4:86416633-86416652 | None:intergenic | 25.0% |
| !! | TCAACTTTTTATAGTAGTGT+CGG | + | chr1.4:86418252-86418271 | None:intergenic | 25.0% |
| !!! | ACTGTTTTAGATATTGTAGT+TGG | + | chr1.4:86418047-86418066 | None:intergenic | 25.0% |
| !!! | CTATTTATAGACTCACTTTT+AGG | + | chr1.4:86416727-86416746 | None:intergenic | 25.0% |
| !!! | CTGTTTTAGATATTGTAGTT+GGG | + | chr1.4:86418046-86418065 | None:intergenic | 25.0% |
| !!! | CTTCTCTTATTTCTAATAAG+AGG | - | chr1.4:86419391-86419410 | MS.gene029299:intron | 25.0% |
| AAGACATTTAAAAGGTTCTC+TGG | + | chr1.4:86419774-86419793 | None:intergenic | 30.0% | |
| AATCAGAAGAATATGATAGG+AGG | + | chr1.4:86418215-86418234 | None:intergenic | 30.0% | |
| AATTTGTCATGTGATGACTA+AGG | + | chr1.4:86418177-86418196 | None:intergenic | 30.0% | |
| ATAAGGCAATGAAAGGTTTA+GGG | - | chr1.4:86419851-86419870 | MS.gene029299:intron | 30.0% | |
| ATACCGTATACGTTGAATAA+TGG | + | chr1.4:86416985-86417004 | None:intergenic | 30.0% | |
| ATCCATTTATAGATGTGAGA+AGG | + | chr1.4:86416870-86416889 | None:intergenic | 30.0% | |
| ATGTTGTTCGATATTCTTGT+TGG | + | chr1.4:86417470-86417489 | None:intergenic | 30.0% | |
| CAATTTCTCTATTAACCTCA+GGG | + | chr1.4:86418720-86418739 | None:intergenic | 30.0% | |
| CAGTTATACCATTCAAAGTT+TGG | - | chr1.4:86418063-86418082 | MS.gene029299:intron | 30.0% | |
| GAAATAAGAGAAGGATAAGA+AGG | + | chr1.4:86419384-86419403 | None:intergenic | 30.0% | |
| GATAAACTCCAAACTTTGAA+TGG | + | chr1.4:86418074-86418093 | None:intergenic | 30.0% | |
| GTATTGTATAAGGCAATGAA+AGG | - | chr1.4:86419844-86419863 | MS.gene029299:intron | 30.0% | |
| TAAAATTGGTCACTACTTAG+AGG | + | chr1.4:86418324-86418343 | None:intergenic | 30.0% | |
| TAATAGAGAAATTGCTGAGA+AGG | - | chr1.4:86418726-86418745 | MS.gene029299:intron | 30.0% | |
| TAATGATAACACGCTGATAA+GGG | - | chr1.4:86419876-86419895 | MS.gene029299:intron | 30.0% | |
| TAGCCATTATTCAACGTATA+CGG | - | chr1.4:86416979-86416998 | MS.gene029299:intron | 30.0% | |
| TATAAGGCAATGAAAGGTTT+AGG | - | chr1.4:86419850-86419869 | MS.gene029299:intron | 30.0% | |
| TCCATTTATAGATGTGAGAA+GGG | + | chr1.4:86416869-86416888 | None:intergenic | 30.0% | |
| TGAAGTCAAATCAAACACTT+CGG | - | chr1.4:86418101-86418120 | MS.gene029299:intron | 30.0% | |
| TGATAAGGGTAATTGTAACA+AGG | - | chr1.4:86419890-86419909 | MS.gene029299:intron | 30.0% | |
| TGTAGATTAGTACATTAGCA+TGG | - | chr1.4:86419297-86419316 | MS.gene029299:intron | 30.0% | |
| TTCTAATTCTATGGTTTCAC+AGG | - | chr1.4:86417375-86417394 | MS.gene029299:intron | 30.0% | |
| TTGTATCAGTGTTTCATACT+TGG | - | chr1.4:86419738-86419757 | MS.gene029299:intron | 30.0% | |
| TTGTCCAAATATTCAGTGAA+AGG | - | chr1.4:86418806-86418825 | MS.gene029299:intron | 30.0% | |
| TTTAGATATTGTAGTTGGGA+TGG | + | chr1.4:86418042-86418061 | None:intergenic | 30.0% | |
| TTTCAAGCTGAAATCATATC+AGG | - | chr1.4:86418954-86418973 | MS.gene029299:intron | 30.0% | |
| ! | AAAATACTTTCCTGGATTAG+TGG | + | chr1.4:86419040-86419059 | None:intergenic | 30.0% |
| ! | ATTTGTGTAACTTTTGGTCA+AGG | - | chr1.4:86419528-86419547 | MS.gene029299:intron | 30.0% |
| ! | CGATTTTGTGGAATGAAATT+AGG | + | chr1.4:86416672-86416691 | None:intergenic | 30.0% |
| !! | ACAAAAAGACAATCTGGTTT+TGG | + | chr1.4:86419179-86419198 | None:intergenic | 30.0% |
| !!! | ATAGATCTGCATTTTTTGTG+AGG | - | chr1.4:86417119-86417138 | MS.gene029299:intron | 30.0% |
| AAAACTTGATCTGCTCTGTA+TGG | + | chr1.4:86417806-86417825 | None:intergenic | 35.0% | |
| AAGAATGAGCTTTCGAACTT+TGG | - | chr1.4:86417159-86417178 | MS.gene029299:intron | 35.0% | |
| AAGTCAAATCAAACACTTCG+GGG | - | chr1.4:86418103-86418122 | MS.gene029299:intron | 35.0% | |
| AATGAAGCTTCAGGGAATTT+CGG | - | chr1.4:86418985-86419004 | MS.gene029299:CDS | 35.0% | |
| AATTCGAATATCAAACCACC+AGG | + | chr1.4:86416907-86416926 | None:intergenic | 35.0% | |
| ACCCTTCTCACATCTATAAA+TGG | - | chr1.4:86416865-86416884 | MS.gene029299:intron | 35.0% | |
| ACCTTTGCAAAATACTTTCC+TGG | + | chr1.4:86419048-86419067 | None:intergenic | 35.0% | |
| AGCAAGACAAAAAGACAATC+TGG | + | chr1.4:86419185-86419204 | None:intergenic | 35.0% | |
| AGGCAGGAAATAGTTATGAA+AGG | - | chr1.4:86419143-86419162 | MS.gene029299:intron | 35.0% | |
| ATAATGGCTAAAAGTGAGTG+AGG | + | chr1.4:86416969-86416988 | None:intergenic | 35.0% | |
| ATATCGAACAACATACTCAG+AGG | - | chr1.4:86417476-86417495 | MS.gene029299:CDS | 35.0% | |
| ATTCGAATATCAAACCACCA+GGG | + | chr1.4:86416906-86416925 | None:intergenic | 35.0% | |
| ATTTATAGATGTGAGAAGGG+TGG | + | chr1.4:86416866-86416885 | None:intergenic | 35.0% | |
| CAACCCTAAAAAAAGTCACA+AGG | + | chr1.4:86416588-86416607 | None:intergenic | 35.0% | |
| CACTCCTTTCACTGAATATT+TGG | + | chr1.4:86418813-86418832 | None:intergenic | 35.0% | |
| CAGTAAAGAATGAAGCTTCA+GGG | - | chr1.4:86418977-86418996 | MS.gene029299:CDS | 35.0% | |
| CTAATGATAACACGCTGATA+AGG | - | chr1.4:86419875-86419894 | MS.gene029299:intron | 35.0% | |
| GAAGTCAAATCAAACACTTC+GGG | - | chr1.4:86418102-86418121 | MS.gene029299:intron | 35.0% | |
| GCAATTTCTCTATTAACCTC+AGG | + | chr1.4:86418721-86418740 | None:intergenic | 35.0% | |
| GGCAGGAAATAGTTATGAAA+GGG | - | chr1.4:86419144-86419163 | MS.gene029299:intron | 35.0% | |
| TAATGGCTAAAAGTGAGTGA+GGG | + | chr1.4:86416968-86416987 | None:intergenic | 35.0% | |
| TAGTATACACTCAACAACCA+TGG | + | chr1.4:86419570-86419589 | None:intergenic | 35.0% | |
| TCGATATTCTTGTTGGATGT+AGG | + | chr1.4:86417463-86417482 | None:intergenic | 35.0% | |
| TGCAAAAGTTGAAGTGAAGA+TGG | + | chr1.4:86419073-86419092 | None:intergenic | 35.0% | |
| TGTATGGTCTTTCATTGCAA+GGG | + | chr1.4:86417790-86417809 | None:intergenic | 35.0% | |
| TTCTATGGTTTCACAGGATT+TGG | - | chr1.4:86417381-86417400 | MS.gene029299:intron | 35.0% | |
| ! | AACCATGCAGGTATTGTATA+AGG | - | chr1.4:86419834-86419853 | MS.gene029299:intron | 35.0% |
| ! | ACTTTTCTTCTCGCACTTTT+GGG | - | chr1.4:86420012-86420031 | MS.gene029299:CDS | 35.0% |
| ! | AGTTCATAGGTTTTCCTCAT+AGG | - | chr1.4:86418461-86418480 | MS.gene029299:CDS | 35.0% |
| ! | CAATATGTGGTTCTATTCCA+GGG | - | chr1.4:86417272-86417291 | MS.gene029299:intron | 35.0% |
| ! | CACAAAATCGGCTTATTCTT+AGG | - | chr1.4:86416682-86416701 | MS.gene029299:intron | 35.0% |
| ! | CACACCATAAGAGTTGATTT+CGG | - | chr1.4:86416764-86416783 | MS.gene029299:intron | 35.0% |
| ! | TCAATATGTGGTTCTATTCC+AGG | - | chr1.4:86417271-86417290 | MS.gene029299:intron | 35.0% |
| ! | TGATTAAAAGCATGCAACCT+TGG | + | chr1.4:86416558-86416577 | None:intergenic | 35.0% |
| ! | TGCATGCTTTTAATCATGCA+TGG | - | chr1.4:86416562-86416581 | MS.gene029299:CDS | 35.0% |
| !! | CTAAGAATAAGCCGATTTTG+TGG | + | chr1.4:86416684-86416703 | None:intergenic | 35.0% |
| !! | CTTTTTATAGTAGTGTCGGA+TGG | + | chr1.4:86418248-86418267 | None:intergenic | 35.0% |
| !!! | ATGGCCTTGTGACTTTTTTT+AGG | - | chr1.4:86416581-86416600 | MS.gene029299:CDS | 35.0% |
| !!! | CATTTTTTGTGAGGAACAAG+AGG | - | chr1.4:86417128-86417147 | MS.gene029299:intron | 35.0% |
| !!! | TCCAGGAAAGTATTTTGCAA+AGG | - | chr1.4:86419044-86419063 | MS.gene029299:CDS | 35.0% |
| !!! | TGGCCTTGTGACTTTTTTTA+GGG | - | chr1.4:86416582-86416601 | MS.gene029299:CDS | 35.0% |
| !!! | TGTGACTTTTTTTAGGGTTG+TGG | - | chr1.4:86416588-86416607 | MS.gene029299:CDS | 35.0% |
| AAAGCGGGTGAAAAGAAACT+CGG | - | chr1.4:86418766-86418785 | MS.gene029299:intron | 40.0% | |
| AATGGCTAAAAGTGAGTGAG+GGG | + | chr1.4:86416967-86416986 | None:intergenic | 40.0% | |
| AATTGCTGAGAAGGATGCAA+AGG | - | chr1.4:86418735-86418754 | MS.gene029299:intron | 40.0% | |
| AATTGGTCACTACTTAGAGG+CGG | + | chr1.4:86418321-86418340 | None:intergenic | 40.0% | |
| ACACTCAACAACCATGGTAA+TGG | + | chr1.4:86419564-86419583 | None:intergenic | 40.0% | |
| AGAGAGAGAGATAGAGAAAG+AGG | + | chr1.4:86416533-86416552 | None:intergenic | 40.0% | |
| AGTCAAATCAAACACTTCGG+GGG | - | chr1.4:86418104-86418123 | MS.gene029299:intron | 40.0% | |
| AGTGCGTGAACAGATTACTT+CGG | + | chr1.4:86418019-86418038 | None:intergenic | 40.0% | |
| ATTGCAAGGGTTGGATTGAT+TGG | + | chr1.4:86417777-86417796 | None:intergenic | 40.0% | |
| CAACTTTACCGTGCTTTCAA+AGG | - | chr1.4:86416504-86416523 | MS.gene029299:CDS | 40.0% | |
| CAATACCTGCATGGTTACAA+AGG | + | chr1.4:86419830-86419849 | None:intergenic | 40.0% | |
| CTGTATGGTCTTTCATTGCA+AGG | + | chr1.4:86417791-86417810 | None:intergenic | 40.0% | |
| GAATATTTCGGATAATGCCC+TGG | + | chr1.4:86417292-86417311 | None:intergenic | 40.0% | |
| GAGAGAGAGATAGAGAAAGA+GGG | + | chr1.4:86416532-86416551 | None:intergenic | 40.0% | |
| GCAGTAAAGAATGAAGCTTC+AGG | - | chr1.4:86418976-86418995 | MS.gene029299:CDS | 40.0% | |
| GGCTTATTCTTAGGCTCATT+GGG | - | chr1.4:86416691-86416710 | MS.gene029299:intron | 40.0% | |
| GTATGGTCACTCATTGAAGA+AGG | - | chr1.4:86418873-86418892 | MS.gene029299:intron | 40.0% | |
| GTGGCATATAACCATTACCA+TGG | - | chr1.4:86419550-86419569 | MS.gene029299:intron | 40.0% | |
| GTGGGCAATTTGTAAGAGTA+GGG | - | chr1.4:86419475-86419494 | MS.gene029299:intron | 40.0% | |
| TAACGATGTATACGTGTGAG+TGG | - | chr1.4:86419700-86419719 | MS.gene029299:intron | 40.0% | |
| TAGGCTCATTGGGTTTGATA+AGG | - | chr1.4:86416701-86416720 | MS.gene029299:intron | 40.0% | |
| TGAGACAGAGAACTAAGACA+TGG | + | chr1.4:86418531-86418550 | None:intergenic | 40.0% | |
| TGAGCCGAAATCAACTCTTA+TGG | + | chr1.4:86416771-86416790 | None:intergenic | 40.0% | |
| TGCAAAGGTTCTCTACAAAG+CGG | - | chr1.4:86418750-86418769 | MS.gene029299:intron | 40.0% | |
| TGCCTTATACAATACCTGCA+TGG | + | chr1.4:86419839-86419858 | None:intergenic | 40.0% | |
| TGTGGGCAATTTGTAAGAGT+AGG | - | chr1.4:86419474-86419493 | MS.gene029299:intron | 40.0% | |
| TTCAGACTGCTGTTCTACTT+TGG | - | chr1.4:86417917-86417936 | MS.gene029299:intron | 40.0% | |
| TTGTGAGGAACAAGAGGAAA+TGG | - | chr1.4:86417134-86417153 | MS.gene029299:intron | 40.0% | |
| ! | CAAAGTTTTCGCATCCTATG+AGG | + | chr1.4:86418478-86418497 | None:intergenic | 40.0% |
| ! | GACTTTTCTTCTCGCACTTT+TGG | - | chr1.4:86420011-86420030 | MS.gene029299:CDS | 40.0% |
| ! | TGTGTAACTTTTGGTCAAGG+TGG | - | chr1.4:86419531-86419550 | MS.gene029299:intron | 40.0% |
| AACCCTATCCACGATCTGTT+TGG | - | chr1.4:86416826-86416845 | MS.gene029299:intron | 45.0% | |
| AGCAATGACCAAACAGATCG+TGG | + | chr1.4:86416837-86416856 | None:intergenic | 45.0% | |
| AGTTGCATCGCATCATCTCT+AGG | + | chr1.4:86416489-86416508 | None:intergenic | 45.0% | |
| CATCAGGAAGTCTCTAGTTG+TGG | - | chr1.4:86417972-86417991 | MS.gene029299:intron | 45.0% | |
| CGGCTTATTCTTAGGCTCAT+TGG | - | chr1.4:86416690-86416709 | MS.gene029299:intron | 45.0% | |
| CTGAAACATCTGGCAACTAC+AGG | - | chr1.4:86419989-86420008 | MS.gene029299:CDS | 45.0% | |
| GACCAAACAGATCGTGGATA+GGG | + | chr1.4:86416831-86416850 | None:intergenic | 45.0% | |
| GACGTGATGTGGAAATCATC+AGG | - | chr1.4:86417956-86417975 | MS.gene029299:intron | 45.0% | |
| GCAAAGGTTCTCTACAAAGC+GGG | - | chr1.4:86418751-86418770 | MS.gene029299:intron | 45.0% | |
| GCTTTCGAAACGCTTGGTTT+CGG | - | chr1.4:86417500-86417519 | MS.gene029299:CDS | 45.0% | |
| TCACACCTTTGTAACCATGC+AGG | - | chr1.4:86419822-86419841 | MS.gene029299:intron | 45.0% | |
| TCTATCTCTCTCTCTCTCCA+AGG | - | chr1.4:86416538-86416557 | MS.gene029299:CDS | 45.0% | |
| TCTGTTTGGTCATTGCTACC+AGG | - | chr1.4:86416840-86416859 | MS.gene029299:intron | 45.0% | |
| TGACCAAACAGATCGTGGAT+AGG | + | chr1.4:86416832-86416851 | None:intergenic | 45.0% | |
| TGGTCTTTCATTGCAAGGGT+TGG | + | chr1.4:86417786-86417805 | None:intergenic | 45.0% | |
| TTACTTCGGTAGCAGCTTCA+AGG | + | chr1.4:86418005-86418024 | None:intergenic | 45.0% | |
| ! | ACAGTGTGCTTGTGTTTTCG+AGG | - | chr1.4:86419123-86419142 | MS.gene029299:intron | 45.0% |
| ! | ATCCAATGTGCCACTAATCC+AGG | - | chr1.4:86419027-86419046 | MS.gene029299:CDS | 45.0% |
| ! | ATCGCATCATCTCTAGGAGA+AGG | + | chr1.4:86416483-86416502 | None:intergenic | 45.0% |
| ! | TCGCATCATCTCTAGGAGAA+GGG | + | chr1.4:86416482-86416501 | None:intergenic | 45.0% |
| !! | AGAGGGTACCTTTGAAAGCA+CGG | + | chr1.4:86416515-86416534 | None:intergenic | 45.0% |
| !! | GCAGTTCACTCTGAAACATC+TGG | - | chr1.4:86419979-86419998 | MS.gene029299:CDS | 45.0% |
| !! | TTCCTGGATTAGTGGCACAT+TGG | + | chr1.4:86419032-86419051 | None:intergenic | 45.0% |
| ACTGACTGCAGCCAAATGTG+CGG | + | chr1.4:86418836-86418855 | None:intergenic | 50.0% | |
| AGAGGAGCTTTCGAAACGCT+TGG | - | chr1.4:86417494-86417513 | MS.gene029299:CDS | 50.0% | |
| ATTTCCACATCACGTCCTGC+AGG | + | chr1.4:86417952-86417971 | None:intergenic | 50.0% | |
| CACTTCGGGGGATCTTCAAA+AGG | - | chr1.4:86418116-86418135 | MS.gene029299:intron | 50.0% | |
| CGGGGGATCTTCAAAAGGTA+AGG | - | chr1.4:86418121-86418140 | MS.gene029299:intron | 50.0% | |
| GGAGCTGAGTGGAAAGTTAG+AGG | - | chr1.4:86417521-86417540 | MS.gene029299:intron | 50.0% | |
| GGATATATGAAGCGTGACCC+TGG | - | chr1.4:86416886-86416905 | MS.gene029299:intron | 50.0% | |
| TATATGAAGCGTGACCCTGG+TGG | - | chr1.4:86416889-86416908 | MS.gene029299:intron | 50.0% | |
| TATTAACCTCAGGGCCTTCG+TGG | + | chr1.4:86418711-86418730 | None:intergenic | 50.0% | |
| TTTCCACATCACGTCCTGCA+GGG | + | chr1.4:86417951-86417970 | None:intergenic | 50.0% | |
| ! | CGCATCATCTCTAGGAGAAG+GGG | + | chr1.4:86416481-86416500 | None:intergenic | 50.0% |
| ! | GCATCATCTCTAGGAGAAGG+GGG | + | chr1.4:86416480-86416499 | None:intergenic | 50.0% |
| ! | TCTCTAGGAGAAGGGGGAAA+TGG | + | chr1.4:86416474-86416493 | None:intergenic | 50.0% |
| !! | CGTGTGAGTGGAGTTTTGTC+TGG | - | chr1.4:86419712-86419731 | MS.gene029299:intron | 50.0% |
| !! | TGAAAGGAGTGCCGCACATT+TGG | - | chr1.4:86418822-86418841 | MS.gene029299:intron | 50.0% |
| !! | TGTGCTTGTGTTTTCGAGGC+AGG | - | chr1.4:86419127-86419146 | MS.gene029299:intron | 50.0% |
| CTAGGAGAAGGGGGAAATGG+AGG | + | chr1.4:86416471-86416490 | None:intergenic | 55.0% | |
| GACGAGTGCGATGTCTGACA+CGG | - | chr1.4:86419635-86419654 | MS.gene029299:intron | 55.0% | |
| GATGTCTGACACGGAAGACG+TGG | - | chr1.4:86419644-86419663 | MS.gene029299:intron | 55.0% | |
| GTGTCAGACATCGCACTCGT+CGG | + | chr1.4:86419636-86419655 | None:intergenic | 55.0% | |
| TAGATGTGAGAAGGGTGGCC+TGG | + | chr1.4:86416861-86416880 | None:intergenic | 55.0% | |
| ACATCACGTCCTGCAGGGTC+AGG | + | chr1.4:86417946-86417965 | None:intergenic | 60.0% | |
| CGCTTGGTTTCGGAGCTGAG+TGG | - | chr1.4:86417510-86417529 | MS.gene029299:intron | 60.0% | |
| CTTTGGATGCCTGACCCTGC+AGG | - | chr1.4:86417934-86417953 | MS.gene029299:intron | 60.0% | |
| GTAAGTACCCCTCGCCACGA+AGG | - | chr1.4:86418694-86418713 | MS.gene029299:intron | 60.0% | |
| TGACCCTGCAGGACGTGATG+TGG | - | chr1.4:86417945-86417964 | MS.gene029299:intron | 60.0% | |
| ACCTCAGGGCCTTCGTGGCG+AGG | + | chr1.4:86418706-86418725 | None:intergenic | 70.0% | |
| CCTCAGGGCCTTCGTGGCGA+GGG | + | chr1.4:86418705-86418724 | None:intergenic | 70.0% | |
| CTCAGGGCCTTCGTGGCGAG+GGG | + | chr1.4:86418704-86418723 | None:intergenic | 70.0% | |
| CCCTCGCCACGAAGGCCCTG+AGG | - | chr1.4:86418702-86418721 | MS.gene029299:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 86416450 | 86420047 | 86416450 | ID=MS.gene029299 |
| chr1.4 | mRNA | 86416450 | 86420047 | 86416450 | ID=MS.gene029299.t1;Parent=MS.gene029299 |
| chr1.4 | exon | 86419972 | 86420047 | 86419972 | ID=MS.gene029299.t1.exon1;Parent=MS.gene029299.t1 |
| chr1.4 | CDS | 86419972 | 86420047 | 86419972 | ID=cds.MS.gene029299.t1;Parent=MS.gene029299.t1 |
| chr1.4 | exon | 86418955 | 86419100 | 86418955 | ID=MS.gene029299.t1.exon2;Parent=MS.gene029299.t1 |
| chr1.4 | CDS | 86418955 | 86419100 | 86418955 | ID=cds.MS.gene029299.t1;Parent=MS.gene029299.t1 |
| chr1.4 | exon | 86418360 | 86418575 | 86418360 | ID=MS.gene029299.t1.exon3;Parent=MS.gene029299.t1 |
| chr1.4 | CDS | 86418360 | 86418575 | 86418360 | ID=cds.MS.gene029299.t1;Parent=MS.gene029299.t1 |
| chr1.4 | exon | 86417603 | 86417818 | 86417603 | ID=MS.gene029299.t1.exon4;Parent=MS.gene029299.t1 |
| chr1.4 | CDS | 86417603 | 86417818 | 86417603 | ID=cds.MS.gene029299.t1;Parent=MS.gene029299.t1 |
| chr1.4 | exon | 86417432 | 86417521 | 86417432 | ID=MS.gene029299.t1.exon5;Parent=MS.gene029299.t1 |
| chr1.4 | CDS | 86417432 | 86417521 | 86417432 | ID=cds.MS.gene029299.t1;Parent=MS.gene029299.t1 |
| chr1.4 | exon | 86416450 | 86416653 | 86416450 | ID=MS.gene029299.t1.exon6;Parent=MS.gene029299.t1 |
| chr1.4 | CDS | 86416450 | 86416653 | 86416450 | ID=cds.MS.gene029299.t1;Parent=MS.gene029299.t1 |
| Gene Sequence |
| Protein sequence |
