Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043964.t1 | XP_003615096.1 | 98.7 | 316 | 4 | 0 | 1 | 316 | 1 | 316 | 4.60E-173 | 617.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043964.t1 | Q9SYT0 | 70.0 | 317 | 94 | 1 | 1 | 316 | 1 | 317 | 1.2e-124 | 447.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043964.t1 | G7KB73 | 98.7 | 316 | 4 | 0 | 1 | 316 | 1 | 316 | 3.3e-173 | 617.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene55897 | MS.gene043964 | PPI |
| MS.gene016642 | MS.gene043964 | PPI |
| MS.gene28077 | MS.gene043964 | PPI |
| MS.gene067369 | MS.gene043964 | PPI |
| MS.gene029299 | MS.gene043964 | PPI |
| MS.gene00058 | MS.gene043964 | PPI |
| MS.gene87117 | MS.gene043964 | PPI |
| MS.gene92405 | MS.gene043964 | PPI |
| MS.gene047020 | MS.gene043964 | PPI |
| MS.gene035327 | MS.gene043964 | PPI |
| MS.gene040097 | MS.gene043964 | PPI |
| MS.gene93736 | MS.gene043964 | PPI |
| MS.gene036493 | MS.gene043964 | PPI |
| MS.gene57291 | MS.gene043964 | PPI |
| MS.gene45772 | MS.gene043964 | PPI |
| MS.gene74945 | MS.gene043964 | PPI |
| MS.gene041553 | MS.gene043964 | PPI |
| MS.gene67887 | MS.gene043964 | PPI |
| MS.gene026445 | MS.gene043964 | PPI |
| MS.gene061777 | MS.gene043964 | PPI |
| MS.gene047030 | MS.gene043964 | PPI |
| MS.gene27444 | MS.gene043964 | PPI |
| MS.gene058336 | MS.gene043964 | PPI |
| MS.gene030809 | MS.gene043964 | PPI |
| MS.gene056195 | MS.gene043964 | PPI |
| MS.gene065031 | MS.gene043964 | PPI |
| MS.gene76197 | MS.gene043964 | PPI |
| MS.gene040887 | MS.gene043964 | PPI |
| MS.gene85401 | MS.gene043964 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043964.t1 | MTR_5g063670 | 98.734 | 316 | 4 | 0 | 1 | 316 | 1 | 316 | 0.0 | 639 |
| MS.gene043964.t1 | MTR_0276s0050 | 66.667 | 315 | 105 | 0 | 1 | 315 | 1 | 315 | 5.67e-151 | 426 |
| MS.gene043964.t1 | MTR_8g038220 | 47.937 | 315 | 163 | 1 | 1 | 315 | 1 | 314 | 2.05e-99 | 295 |
| MS.gene043964.t1 | MTR_2g031980 | 44.904 | 314 | 172 | 1 | 1 | 314 | 1 | 313 | 3.73e-99 | 295 |
| MS.gene043964.t1 | MTR_3g018780 | 46.349 | 315 | 168 | 1 | 1 | 315 | 1 | 314 | 6.02e-99 | 294 |
| MS.gene043964.t1 | MTR_8g038220 | 47.619 | 315 | 163 | 1 | 1 | 315 | 1 | 313 | 1.30e-98 | 293 |
| MS.gene043964.t1 | MTR_3g018790 | 46.349 | 315 | 168 | 1 | 1 | 315 | 1 | 314 | 2.01e-97 | 290 |
| MS.gene043964.t1 | MTR_8g038210 | 46.984 | 315 | 165 | 2 | 1 | 315 | 1 | 313 | 4.35e-97 | 289 |
| MS.gene043964.t1 | MTR_8g038210 | 46.032 | 315 | 168 | 2 | 1 | 315 | 1 | 313 | 1.74e-93 | 280 |
| MS.gene043964.t1 | MTR_8g038180 | 46.795 | 312 | 165 | 1 | 1 | 312 | 1 | 311 | 7.87e-93 | 278 |
| MS.gene043964.t1 | MTR_8g038150 | 42.857 | 315 | 177 | 1 | 1 | 312 | 1 | 315 | 8.55e-82 | 251 |
| MS.gene043964.t1 | MTR_8g107640 | 37.460 | 315 | 191 | 6 | 1 | 312 | 1 | 312 | 1.26e-68 | 216 |
| MS.gene043964.t1 | MTR_3g018790 | 44.215 | 242 | 135 | 0 | 74 | 315 | 19 | 260 | 1.59e-68 | 214 |
| MS.gene043964.t1 | MTR_1g033560 | 35.556 | 315 | 201 | 2 | 1 | 314 | 1 | 314 | 7.46e-65 | 207 |
| MS.gene043964.t1 | MTR_6g071605 | 35.625 | 320 | 196 | 5 | 1 | 315 | 1 | 315 | 8.08e-64 | 204 |
| MS.gene043964.t1 | MTR_6g071615 | 37.188 | 320 | 191 | 5 | 1 | 315 | 1 | 315 | 1.87e-63 | 203 |
| MS.gene043964.t1 | MTR_8g038170 | 38.608 | 316 | 169 | 5 | 14 | 312 | 4 | 311 | 5.59e-62 | 199 |
| MS.gene043964.t1 | MTR_8g038170 | 38.608 | 316 | 169 | 5 | 14 | 312 | 4 | 311 | 5.59e-62 | 199 |
| MS.gene043964.t1 | MTR_1g112520 | 35.962 | 317 | 193 | 5 | 1 | 312 | 1 | 312 | 5.34e-61 | 197 |
| MS.gene043964.t1 | MTR_6g071595 | 34.768 | 302 | 189 | 3 | 15 | 312 | 15 | 312 | 4.02e-55 | 182 |
| MS.gene043964.t1 | MTR_3g018920 | 44.340 | 212 | 85 | 2 | 1 | 212 | 1 | 179 | 2.73e-52 | 170 |
| MS.gene043964.t1 | MTR_6g071595 | 33.750 | 240 | 151 | 3 | 15 | 250 | 15 | 250 | 1.96e-39 | 140 |
| MS.gene043964.t1 | MTR_6g028030 | 28.000 | 275 | 190 | 4 | 44 | 310 | 33 | 307 | 1.63e-28 | 112 |
| MS.gene043964.t1 | MTR_3g018925 | 38.542 | 96 | 59 | 0 | 220 | 315 | 14 | 109 | 1.86e-18 | 79.7 |
| MS.gene043964.t1 | MTR_8g038090 | 39.080 | 87 | 51 | 2 | 228 | 312 | 4 | 90 | 5.12e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043964.t1 | AT1G35720 | 70.032 | 317 | 94 | 1 | 1 | 316 | 1 | 317 | 1.61e-164 | 461 |
| MS.gene043964.t1 | AT5G65020 | 64.669 | 317 | 111 | 1 | 1 | 316 | 1 | 317 | 1.55e-153 | 432 |
| MS.gene043964.t1 | AT5G10230 | 64.873 | 316 | 111 | 0 | 1 | 316 | 1 | 316 | 2.89e-153 | 432 |
| MS.gene043964.t1 | AT5G10220 | 62.893 | 318 | 116 | 1 | 1 | 316 | 1 | 318 | 4.14e-149 | 421 |
| MS.gene043964.t1 | AT5G65020 | 65.188 | 293 | 101 | 1 | 25 | 316 | 10 | 302 | 8.39e-143 | 405 |
| MS.gene043964.t1 | AT5G12380 | 50.160 | 313 | 155 | 1 | 1 | 313 | 1 | 312 | 4.32e-111 | 325 |
| MS.gene043964.t1 | AT2G38760 | 39.937 | 318 | 185 | 2 | 1 | 312 | 1 | 318 | 1.81e-75 | 234 |
| MS.gene043964.t1 | AT1G68090 | 33.227 | 313 | 208 | 1 | 1 | 312 | 1 | 313 | 6.68e-62 | 199 |
| MS.gene043964.t1 | AT2G38750 | 35.625 | 320 | 180 | 7 | 16 | 315 | 6 | 319 | 3.38e-49 | 167 |
| MS.gene043964.t1 | AT2G38750 | 35.831 | 307 | 174 | 6 | 26 | 315 | 2 | 302 | 8.34e-49 | 165 |
| MS.gene043964.t1 | AT1G68090 | 30.800 | 250 | 172 | 1 | 1 | 249 | 1 | 250 | 3.50e-43 | 149 |
Find 58 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCAGAGGCTTGTTCATCTT+TGG | 0.222544 | 5.3:-49857158 | MS.gene043964:intron |
| AAAGACAGGTACTCATCTTT+TGG | 0.255410 | 5.3:+49856394 | None:intergenic |
| AGGATTGATTATATCAATCT+TGG | 0.340813 | 5.3:-49857827 | MS.gene043964:CDS |
| AAGAACTAACCAGAGGTAAT+AGG | 0.379410 | 5.3:+49856705 | None:intergenic |
| TGACTACGAGAAAATGCTTT+TGG | 0.381008 | 5.3:-49856161 | MS.gene043964:CDS |
| AAGTCTTAGCGTAAGCTTCT+CGG | 0.400927 | 5.3:+49857773 | None:intergenic |
| TCTTGACCGTGCCATTGTTA+AGG | 0.405002 | 5.3:-49856194 | MS.gene043964:CDS |
| ACTGGTAAGCTCTTTGTTCA+AGG | 0.435992 | 5.3:+49857729 | None:intergenic |
| GTTCTAGCTCCTATTACCTC+TGG | 0.436292 | 5.3:-49856714 | MS.gene043964:intron |
| GATGTTGCTTATCACACAAC+TGG | 0.448316 | 5.3:-49856970 | MS.gene043964:CDS |
| AAGATGGACATCAAGCAATC+AGG | 0.467568 | 5.3:-49857085 | MS.gene043964:CDS |
| GCGAAGCTGTTCAACGTCAT+CGG | 0.470095 | 5.3:+49858365 | None:intergenic |
| AATCACTACAAGGATGCATT+CGG | 0.471381 | 5.3:-49856533 | MS.gene043964:CDS |
| GGATTGATTATATCAATCTT+GGG | 0.471944 | 5.3:-49857826 | MS.gene043964:CDS |
| GTAGGTTGGGGAACGAATGA+AGG | 0.472081 | 5.3:-49857847 | MS.gene043964:intron |
| CTGATGAAGGAGCTCTTACA+AGG | 0.491225 | 5.3:-49856288 | MS.gene043964:CDS |
| ATAACGACGACGATTTCATC+AGG | 0.493456 | 5.3:-49856598 | MS.gene043964:CDS |
| GCACGAGAAGATTTCAAAGA+AGG | 0.494364 | 5.3:-49856624 | MS.gene043964:CDS |
| GAGACAGGAGGAAGAGGATG+AGG | 0.502593 | 5.3:+49858387 | None:intergenic |
| TTATGAAGAAGATCTCATAA+AGG | 0.507106 | 5.3:-49857752 | MS.gene043964:CDS |
| TGTTCAACGTCATCGGAGAC+AGG | 0.520924 | 5.3:+49858372 | None:intergenic |
| TTATATCAATCTTGGGTCAT+CGG | 0.522845 | 5.3:-49857819 | MS.gene043964:CDS |
| GCTTGTTCATCTTTGGACAC+TGG | 0.525710 | 5.3:-49857151 | MS.gene043964:CDS |
| ATCTTCGCAAAGTACCTCTC+GGG | 0.530069 | 5.3:+49856340 | None:intergenic |
| TCATCGGAGACAGGAGGAAG+AGG | 0.530983 | 5.3:+49858381 | None:intergenic |
| CAAACGAAGCAACTAAAAGA+TGG | 0.539747 | 5.3:-49857101 | MS.gene043964:CDS |
| AAGATCGACTGTCAAGTGCT+TGG | 0.542864 | 5.3:-49856368 | MS.gene043964:CDS |
| CAGTCGATCTTATTAAAGAC+AGG | 0.542930 | 5.3:+49856380 | None:intergenic |
| AACAAGCGAGGAACTGATGA+AGG | 0.545290 | 5.3:-49856301 | MS.gene043964:CDS |
| ATCAAGCAATCAGGTTCTAG+TGG | 0.550196 | 5.3:-49857076 | MS.gene043964:CDS |
| TATCTTCGCAAAGTACCTCT+CGG | 0.551321 | 5.3:+49856339 | None:intergenic |
| TGCTACTTTGAATCACTACA+AGG | 0.568307 | 5.3:-49856543 | MS.gene043964:CDS |
| TGATTTGAAAATTATAGCTG+AGG | 0.571271 | 5.3:-49856242 | MS.gene043964:CDS |
| TTAACTGACCTCAAAATCAC+TGG | 0.572067 | 5.3:+49857711 | None:intergenic |
| GTCATCGGAATGAGGTTCAA+AGG | 0.585027 | 5.3:-49857804 | MS.gene043964:CDS |
| GCCATTGTTAAGGACACCAC+TGG | 0.594159 | 5.3:-49856184 | MS.gene043964:CDS |
| TTAACAATGGCACGGTCAAG+AGG | 0.594943 | 5.3:+49856196 | None:intergenic |
| TTATAGCTGAGGAGTATCAA+AGG | 0.599060 | 5.3:-49856231 | MS.gene043964:CDS |
| AGGAGCTCTTACAAGGGTGG+TGG | 0.601483 | 5.3:-49856281 | MS.gene043964:CDS |
| AATCTTGGGTCATCGGAATG+AGG | 0.606056 | 5.3:-49857812 | MS.gene043964:CDS |
| GGTTAGTTCTTACCGCTACG+AGG | 0.606344 | 5.3:-49856693 | MS.gene043964:CDS |
| TCGGAATGAGGTTCAAAGGA+AGG | 0.612348 | 5.3:-49857800 | MS.gene043964:CDS |
| AGACAGGAGGAAGAGGATGA+GGG | 0.623354 | 5.3:+49858388 | None:intergenic |
| ACCAGTGGTGTCCTTAACAA+TGG | 0.632957 | 5.3:+49856183 | None:intergenic |
| TAACAATGGCACGGTCAAGA+GGG | 0.633235 | 5.3:+49856197 | None:intergenic |
| GTTAGTTCTTACCGCTACGA+GGG | 0.642496 | 5.3:-49856692 | MS.gene043964:CDS |
| CGCGAGGCTATCAACAAGCG+AGG | 0.647671 | 5.3:-49856313 | MS.gene043964:CDS |
| TGGTGTCCTTAACAATGGCA+CGG | 0.661335 | 5.3:+49856188 | None:intergenic |
| CACAACTGGAGACTTCCGTA+AGG | 0.666018 | 5.3:-49856956 | MS.gene043964:intron |
| TGAAGGAGCTCTTACAAGGG+TGG | 0.668685 | 5.3:-49856284 | MS.gene043964:CDS |
| TGATGAAGGAGCTCTTACAA+GGG | 0.669212 | 5.3:-49856287 | MS.gene043964:CDS |
| CTTTGCGAAGATAATTCGCG+AGG | 0.669559 | 5.3:-49856329 | MS.gene043964:CDS |
| TCAACGTCATCGGAGACAGG+AGG | 0.672591 | 5.3:+49858375 | None:intergenic |
| CTTGACTATAGCAAAAGCCG+AGG | 0.685041 | 5.3:-49856657 | MS.gene043964:CDS |
| TGACTTCATCTCCCTCGTAG+CGG | 0.703189 | 5.3:+49856681 | None:intergenic |
| ATTCGGAAAAGATATAAACA+AGG | 0.714446 | 5.3:-49856516 | MS.gene043964:intron |
| TAGCTGAGGAGTATCAAAGG+AGG | 0.718780 | 5.3:-49856228 | MS.gene043964:CDS |
| TAGCGGTAAGAACTAACCAG+AGG | 0.741450 | 5.3:+49856698 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTCAAAATTAGTTTATTTT+TGG | - | chr5.3:49857802-49857821 | MS.gene043964:CDS | 10.0% |
| !!! | AAATCTAAAATCCAAATTAA+AGG | + | chr5.3:49856863-49856882 | None:intergenic | 15.0% |
| !! | TAAAATCCAAATTAAAGGTT+TGG | + | chr5.3:49856858-49856877 | None:intergenic | 20.0% |
| !! | TTTGTAAGTTATTTGATTGA+TGG | - | chr5.3:49856279-49856298 | MS.gene043964:CDS | 20.0% |
| !!! | ATTAAGTTGTTTATCCAAAA+AGG | + | chr5.3:49856911-49856930 | None:intergenic | 20.0% |
| !!! | ATTGGCTCAAAAAATTAAAA+CGG | + | chr5.3:49858104-49858123 | None:intergenic | 20.0% |
| !!! | ATTTGGATTTTAGATTTGAA+TGG | - | chr5.3:49856866-49856885 | MS.gene043964:intron | 20.0% |
| !!! | TAATCAACATAACATCTTTT+TGG | + | chr5.3:49857238-49857257 | None:intergenic | 20.0% |
| !!! | TTTTCATATAAGCTATAAGA+TGG | - | chr5.3:49856976-49856995 | MS.gene043964:CDS | 20.0% |
| ! | ACACATATTATTCTTGTTAC+AGG | + | chr5.3:49857315-49857334 | None:intergenic | 25.0% |
| ! | AGACTAAGTTACATATTACA+TGG | + | chr5.3:49856232-49856251 | None:intergenic | 25.0% |
| ! | AGGATTGATTATATCAATCT+TGG | - | chr5.3:49856713-49856732 | MS.gene043964:intron | 25.0% |
| ! | ATTCGGAAAAGATATAAACA+AGG | - | chr5.3:49858024-49858043 | MS.gene043964:intron | 25.0% |
| ! | GGATTGATTATATCAATCTT+GGG | - | chr5.3:49856714-49856733 | MS.gene043964:intron | 25.0% |
| ! | TCAAATGAACAAATCTAAAC+AGG | - | chr5.3:49857113-49857132 | MS.gene043964:CDS | 25.0% |
| ! | TGATTTGAAAATTATAGCTG+AGG | - | chr5.3:49858298-49858317 | MS.gene043964:intron | 25.0% |
| ! | TTATGAAGAAGATCTCATAA+AGG | - | chr5.3:49856788-49856807 | MS.gene043964:intron | 25.0% |
| ! | TTGATTTATGATTGTGTTGT+AGG | - | chr5.3:49856675-49856694 | MS.gene043964:CDS | 25.0% |
| ! | TTTGTATTTAGACTAAATGC+AGG | - | chr5.3:49857709-49857728 | MS.gene043964:intron | 25.0% |
| !! | AAAATGCTTTTGGCAATTTT+AGG | - | chr5.3:49858389-49858408 | MS.gene043964:CDS | 25.0% |
| !! | AAGATGTTATGTTGATTAAG+AGG | - | chr5.3:49857240-49857259 | MS.gene043964:intron | 25.0% |
| !! | AGATGTTATGTTGATTAAGA+GGG | - | chr5.3:49857241-49857260 | MS.gene043964:intron | 25.0% |
| !!! | GTACTGTGTTTTTTGTATTT+AGG | - | chr5.3:49856589-49856608 | MS.gene043964:CDS | 25.0% |
| !!! | TCAATTGTTTTTTGCAAAGA+AGG | - | chr5.3:49857512-49857531 | MS.gene043964:intron | 25.0% |
| AATAAGCTGAAAACAGCTTA+TGG | - | chr5.3:49857029-49857048 | MS.gene043964:CDS | 30.0% | |
| CTATTGTGTATATCTGATCT+TGG | - | chr5.3:49857681-49857700 | MS.gene043964:intron | 30.0% | |
| CTGATTAAAACCTGACTTTA+GGG | - | chr5.3:49857212-49857231 | MS.gene043964:intron | 30.0% | |
| GATGGTTTCTTAAGTTATTC+TGG | - | chr5.3:49856994-49857013 | MS.gene043964:CDS | 30.0% | |
| TAACTAACAAGTTTATGCAC+AGG | + | chr5.3:49857625-49857644 | None:intergenic | 30.0% | |
| TCTGATTAAAACCTGACTTT+AGG | - | chr5.3:49857211-49857230 | MS.gene043964:intron | 30.0% | |
| TTATATCAATCTTGGGTCAT+CGG | - | chr5.3:49856721-49856740 | MS.gene043964:intron | 30.0% | |
| TTATGATTGTGTTGTAGGTT+GGG | - | chr5.3:49856680-49856699 | MS.gene043964:CDS | 30.0% | |
| TTTATGATTGTGTTGTAGGT+TGG | - | chr5.3:49856679-49856698 | MS.gene043964:CDS | 30.0% | |
| ! | GATGTTATGTTGATTAAGAG+GGG | - | chr5.3:49857242-49857261 | MS.gene043964:intron | 30.0% |
| ! | TTGAATTTTCTCTTCATCAG+AGG | - | chr5.3:49857367-49857386 | MS.gene043964:intron | 30.0% |
| ! | TTTTAGACTTGGATCCTTTT+TGG | - | chr5.3:49856894-49856913 | MS.gene043964:intron | 30.0% |
| !! | AGTCAGGTTTTAATCAGAAT+TGG | + | chr5.3:49857209-49857228 | None:intergenic | 30.0% |
| !! | ATTTGTGACACTTTGAGTTT+TGG | - | chr5.3:49857165-49857184 | MS.gene043964:intron | 30.0% |
| !! | GTCAGGTTTTAATCAGAATT+GGG | + | chr5.3:49857208-49857227 | None:intergenic | 30.0% |
| !! | TTCATAGATCAGTTTTGACA+TGG | + | chr5.3:49856501-49856520 | None:intergenic | 30.0% |
| !!! | ATTTTTTGAGCCAATGTTGT+AGG | - | chr5.3:49858109-49858128 | MS.gene043964:intron | 30.0% |
| !!! | GTTTTTTGTATTTAGGCTTG+TGG | - | chr5.3:49856596-49856615 | MS.gene043964:CDS | 30.0% |
| AAGAACTAACCAGAGGTAAT+AGG | + | chr5.3:49857838-49857857 | None:intergenic | 35.0% | |
| AATCACTACAAGGATGCATT+CGG | - | chr5.3:49858007-49858026 | MS.gene043964:intron | 35.0% | |
| AATCAGTCAGTAGTACCTTA+CGG | + | chr5.3:49857602-49857621 | None:intergenic | 35.0% | |
| ATCACATGAAACCAGAAACA+TGG | + | chr5.3:49856655-49856674 | None:intergenic | 35.0% | |
| CAAACGAAGCAACTAAAAGA+TGG | - | chr5.3:49857439-49857458 | MS.gene043964:intron | 35.0% | |
| CAGTCGATCTTATTAAAGAC+AGG | + | chr5.3:49858163-49858182 | None:intergenic | 35.0% | |
| TAAGGGCCAAACCTTTAATT+TGG | - | chr5.3:49856849-49856868 | MS.gene043964:intron | 35.0% | |
| TATGATTGTGTTGTAGGTTG+GGG | - | chr5.3:49856681-49856700 | MS.gene043964:CDS | 35.0% | |
| TCTAAACAGGCTTCGAATTA+TGG | - | chr5.3:49857126-49857145 | MS.gene043964:CDS | 35.0% | |
| TCTTTCAGATCCTACAACAT+TGG | + | chr5.3:49858122-49858141 | None:intergenic | 35.0% | |
| TTAACTGACCTCAAAATCAC+TGG | + | chr5.3:49856832-49856851 | None:intergenic | 35.0% | |
| TTCAGAGTTTACCATGTTTC+TGG | - | chr5.3:49856641-49856660 | MS.gene043964:CDS | 35.0% | |
| ! | AAAGACAGGTACTCATCTTT+TGG | + | chr5.3:49858149-49858168 | None:intergenic | 35.0% |
| ! | AAGTTATTCTGGAGAGCTTA+TGG | - | chr5.3:49857005-49857024 | MS.gene043964:CDS | 35.0% |
| ! | TGACTACGAGAAAATGCTTT+TGG | - | chr5.3:49858379-49858398 | MS.gene043964:CDS | 35.0% |
| !! | TGCTACTTTGAATCACTACA+AGG | - | chr5.3:49857997-49858016 | MS.gene043964:intron | 35.0% |
| !! | TTATAGCTGAGGAGTATCAA+AGG | - | chr5.3:49858309-49858328 | MS.gene043964:intron | 35.0% |
| !!! | AGTGATTTTGAGGTCAGTTA+AGG | - | chr5.3:49856831-49856850 | MS.gene043964:intron | 35.0% |
| !!! | GAATGGATTGCTTTTAGACT+TGG | - | chr5.3:49856883-49856902 | MS.gene043964:intron | 35.0% |
| !!! | GTGATTTTGAGGTCAGTTAA+GGG | - | chr5.3:49856832-49856851 | MS.gene043964:intron | 35.0% |
| !!! | TCATCAGGATTTTAGCTACA+AGG | - | chr5.3:49857957-49857976 | MS.gene043964:intron | 35.0% |
| AAGATGGACATCAAGCAATC+AGG | - | chr5.3:49857455-49857474 | MS.gene043964:intron | 40.0% | |
| AAGTCTTAGCGTAAGCTTCT+CGG | + | chr5.3:49856770-49856789 | None:intergenic | 40.0% | |
| ACTGGTAAGCTCTTTGTTCA+AGG | + | chr5.3:49856814-49856833 | None:intergenic | 40.0% | |
| ATAACGACGACGATTTCATC+AGG | - | chr5.3:49857942-49857961 | MS.gene043964:intron | 40.0% | |
| CAAAAATGCATCACGTTCAG+CGG | + | chr5.3:49857418-49857437 | None:intergenic | 40.0% | |
| GCACGAGAAGATTTCAAAGA+AGG | - | chr5.3:49857916-49857935 | MS.gene043964:intron | 40.0% | |
| TGATGAAGGAGCTCTTACAA+GGG | - | chr5.3:49858253-49858272 | MS.gene043964:intron | 40.0% | |
| ! | AGAGCTTACCAGTGATTTTG+AGG | - | chr5.3:49856821-49856840 | MS.gene043964:intron | 40.0% |
| ! | ATCAAGCAATCAGGTTCTAG+TGG | - | chr5.3:49857464-49857483 | MS.gene043964:intron | 40.0% |
| ! | ATCAGAGGCTTGTTCATCTT+TGG | - | chr5.3:49857382-49857401 | MS.gene043964:intron | 40.0% |
| ! | GATGTTGCTTATCACACAAC+TGG | - | chr5.3:49857570-49857589 | MS.gene043964:intron | 40.0% |
| ! | TATCTTCGCAAAGTACCTCT+CGG | + | chr5.3:49858204-49858223 | None:intergenic | 40.0% |
| !! | ATCTTTTTGGCCCTAAAGTC+AGG | + | chr5.3:49857225-49857244 | None:intergenic | 40.0% |
| AACAAGCGAGGAACTGATGA+AGG | - | chr5.3:49858239-49858258 | MS.gene043964:intron | 45.0% | |
| AAGATCGACTGTCAAGTGCT+TGG | - | chr5.3:49858172-49858191 | MS.gene043964:intron | 45.0% | |
| AATCTTGGGTCATCGGAATG+AGG | - | chr5.3:49856728-49856747 | MS.gene043964:intron | 45.0% | |
| ACCAGTGGTGTCCTTAACAA+TGG | + | chr5.3:49858360-49858379 | None:intergenic | 45.0% | |
| CTGATGAAGGAGCTCTTACA+AGG | - | chr5.3:49858252-49858271 | MS.gene043964:intron | 45.0% | |
| CTTGACTATAGCAAAAGCCG+AGG | - | chr5.3:49857883-49857902 | MS.gene043964:intron | 45.0% | |
| CTTTGCGAAGATAATTCGCG+AGG | - | chr5.3:49858211-49858230 | MS.gene043964:intron | 45.0% | |
| GCTTGTTCATCTTTGGACAC+TGG | - | chr5.3:49857389-49857408 | MS.gene043964:intron | 45.0% | |
| GTCATCGGAATGAGGTTCAA+AGG | - | chr5.3:49856736-49856755 | MS.gene043964:intron | 45.0% | |
| GTTACTGATCTCGAGGCTAT+CGG | + | chr5.3:49856433-49856452 | None:intergenic | 45.0% | |
| TAACAATGGCACGGTCAAGA+GGG | + | chr5.3:49858346-49858365 | None:intergenic | 45.0% | |
| TAGCGGTAAGAACTAACCAG+AGG | + | chr5.3:49857845-49857864 | None:intergenic | 45.0% | |
| TCCTTCACGCAGTTACTACA+GGG | - | chr5.3:49856457-49856476 | MS.gene043964:intron | 45.0% | |
| TCGGAATGAGGTTCAAAGGA+AGG | - | chr5.3:49856740-49856759 | MS.gene043964:intron | 45.0% | |
| TGGTGTCCTTAACAATGGCA+CGG | + | chr5.3:49858355-49858374 | None:intergenic | 45.0% | |
| TTAACAATGGCACGGTCAAG+AGG | + | chr5.3:49858347-49858366 | None:intergenic | 45.0% | |
| ! | ATCTTCGCAAAGTACCTCTC+GGG | + | chr5.3:49858203-49858222 | None:intergenic | 45.0% |
| ! | CATTTTCTCGTAGTCACCAG+TGG | + | chr5.3:49858375-49858394 | None:intergenic | 45.0% |
| ! | CGCTGAACGTGATGCATTTT+TGG | - | chr5.3:49857416-49857435 | MS.gene043964:intron | 45.0% |
| ! | GTTAGTTCTTACCGCTACGA+GGG | - | chr5.3:49857848-49857867 | MS.gene043964:intron | 45.0% |
| ! | TCTTGACCGTGCCATTGTTA+AGG | - | chr5.3:49858346-49858365 | MS.gene043964:intron | 45.0% |
| !! | CAGCTTCGCAAAGCATTTTC+AGG | - | chr5.3:49856189-49856208 | MS.gene043964:CDS | 45.0% |
| !! | CTCGTGCAGTATTTTTGCCT+CGG | + | chr5.3:49857903-49857922 | None:intergenic | 45.0% |
| !! | GTTCTAGCTCCTATTACCTC+TGG | - | chr5.3:49857826-49857845 | MS.gene043964:CDS | 45.0% |
| !! | TAGCTGAGGAGTATCAAAGG+AGG | - | chr5.3:49858312-49858331 | MS.gene043964:intron | 45.0% |
| AGACAGGAGGAAGAGGATGA+GGG | + | chr5.3:49856155-49856174 | None:intergenic | 50.0% | |
| CACAACTGGAGACTTCCGTA+AGG | - | chr5.3:49857584-49857603 | MS.gene043964:intron | 50.0% | |
| GCCATTGTTAAGGACACCAC+TGG | - | chr5.3:49858356-49858375 | MS.gene043964:CDS | 50.0% | |
| GCGAAGCTGTTCAACGTCAT+CGG | + | chr5.3:49856178-49856197 | None:intergenic | 50.0% | |
| GTCCTTCACGCAGTTACTAC+AGG | - | chr5.3:49856456-49856475 | MS.gene043964:intron | 50.0% | |
| TCCCTGTAGTAACTGCGTGA+AGG | + | chr5.3:49856461-49856480 | None:intergenic | 50.0% | |
| TGAAGGAGCTCTTACAAGGG+TGG | - | chr5.3:49858256-49858275 | MS.gene043964:intron | 50.0% | |
| TGACTTCATCTCCCTCGTAG+CGG | + | chr5.3:49857862-49857881 | None:intergenic | 50.0% | |
| TGTTCAACGTCATCGGAGAC+AGG | + | chr5.3:49856171-49856190 | None:intergenic | 50.0% | |
| ! | GGTTAGTTCTTACCGCTACG+AGG | - | chr5.3:49857847-49857866 | MS.gene043964:intron | 50.0% |
| ! | GTAGGTTGGGGAACGAATGA+AGG | - | chr5.3:49856693-49856712 | MS.gene043964:CDS | 50.0% |
| !! | AGTGCTTGGTTTTTCCCGAG+AGG | - | chr5.3:49858186-49858205 | MS.gene043964:intron | 50.0% |
| AGGAGCTCTTACAAGGGTGG+TGG | - | chr5.3:49858259-49858278 | MS.gene043964:intron | 55.0% | |
| GAGACAGGAGGAAGAGGATG+AGG | + | chr5.3:49856156-49856175 | None:intergenic | 55.0% | |
| GAGCGTGATGCGCAACTGTT+TGG | - | chr5.3:49857264-49857283 | MS.gene043964:intron | 55.0% | |
| GGACGCAGTTACTGATCTCG+AGG | + | chr5.3:49856440-49856459 | None:intergenic | 55.0% | |
| TCAACGTCATCGGAGACAGG+AGG | + | chr5.3:49856168-49856187 | None:intergenic | 55.0% | |
| TCATCGGAGACAGGAGGAAG+AGG | + | chr5.3:49856162-49856181 | None:intergenic | 55.0% | |
| CGCGAGGCTATCAACAAGCG+AGG | - | chr5.3:49858227-49858246 | MS.gene043964:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 49856135 | 49858427 | 49856135 | ID=MS.gene043964 |
| chr5.3 | mRNA | 49856135 | 49858427 | 49856135 | ID=MS.gene043964.t1;Parent=MS.gene043964 |
| chr5.3 | exon | 49858352 | 49858427 | 49858352 | ID=MS.gene043964.t1.exon1;Parent=MS.gene043964.t1 |
| chr5.3 | CDS | 49858352 | 49858427 | 49858352 | ID=cds.MS.gene043964.t1;Parent=MS.gene043964.t1 |
| chr5.3 | exon | 49857720 | 49857865 | 49857720 | ID=MS.gene043964.t1.exon2;Parent=MS.gene043964.t1 |
| chr5.3 | CDS | 49857720 | 49857865 | 49857720 | ID=cds.MS.gene043964.t1;Parent=MS.gene043964.t1 |
| chr5.3 | exon | 49856957 | 49857175 | 49856957 | ID=MS.gene043964.t1.exon3;Parent=MS.gene043964.t1 |
| chr5.3 | CDS | 49856957 | 49857175 | 49856957 | ID=cds.MS.gene043964.t1;Parent=MS.gene043964.t1 |
| chr5.3 | exon | 49856517 | 49856729 | 49856517 | ID=MS.gene043964.t1.exon4;Parent=MS.gene043964.t1 |
| chr5.3 | CDS | 49856517 | 49856729 | 49856517 | ID=cds.MS.gene043964.t1;Parent=MS.gene043964.t1 |
| chr5.3 | exon | 49856135 | 49856431 | 49856135 | ID=MS.gene043964.t1.exon5;Parent=MS.gene043964.t1 |
| chr5.3 | CDS | 49856135 | 49856431 | 49856135 | ID=cds.MS.gene043964.t1;Parent=MS.gene043964.t1 |
| Gene Sequence |
| Protein sequence |
