Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene058336.t1 | XP_013463074.1 | 94.9 | 313 | 16 | 0 | 1 | 313 | 1 | 313 | 3.20E-166 | 594.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene058336.t1 | Q94CK4 | 58.0 | 312 | 131 | 0 | 1 | 312 | 1 | 312 | 3.6e-102 | 372.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene058336.t1 | A0A072V514 | 94.9 | 313 | 16 | 0 | 1 | 313 | 1 | 313 | 2.3e-166 | 594.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene058336 | MS.gene040097 | PPI |
MS.gene058336 | MS.gene27444 | PPI |
MS.gene93736 | MS.gene058336 | PPI |
MS.gene056195 | MS.gene058336 | PPI |
MS.gene57291 | MS.gene058336 | PPI |
MS.gene76197 | MS.gene058336 | PPI |
MS.gene45772 | MS.gene058336 | PPI |
MS.gene026445 | MS.gene058336 | PPI |
MS.gene061777 | MS.gene058336 | PPI |
MS.gene047030 | MS.gene058336 | PPI |
MS.gene058336 | MS.gene89484 | PPI |
MS.gene058336 | MS.gene035891 | PPI |
MS.gene065031 | MS.gene058336 | PPI |
MS.gene058336 | MS.gene010215 | PPI |
MS.gene058336 | MS.gene067369 | PPI |
MS.gene058336 | MS.gene92405 | PPI |
MS.gene040887 | MS.gene058336 | PPI |
MS.gene85401 | MS.gene058336 | PPI |
MS.gene016642 | MS.gene058336 | PPI |
MS.gene058336 | MS.gene87117 | PPI |
MS.gene28077 | MS.gene058336 | PPI |
MS.gene058336 | MS.gene030809 | PPI |
MS.gene058336 | MS.gene043964 | PPI |
MS.gene058336 | MS.gene047020 | PPI |
MS.gene029299 | MS.gene058336 | PPI |
MS.gene74945 | MS.gene058336 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene058336.t1 | MTR_2g031980 | 94.888 | 313 | 16 | 0 | 1 | 313 | 1 | 313 | 0.0 | 615 |
MS.gene058336.t1 | MTR_8g038220 | 48.243 | 313 | 161 | 1 | 1 | 313 | 1 | 312 | 6.94e-111 | 324 |
MS.gene058336.t1 | MTR_8g038220 | 47.923 | 313 | 163 | 0 | 1 | 313 | 1 | 313 | 1.57e-110 | 323 |
MS.gene058336.t1 | MTR_3g018780 | 45.981 | 311 | 168 | 0 | 1 | 311 | 1 | 311 | 2.18e-107 | 315 |
MS.gene058336.t1 | MTR_3g018790 | 46.965 | 313 | 166 | 0 | 1 | 313 | 1 | 313 | 2.14e-105 | 310 |
MS.gene058336.t1 | MTR_8g038180 | 46.945 | 311 | 165 | 0 | 1 | 311 | 1 | 311 | 1.59e-103 | 305 |
MS.gene058336.t1 | MTR_5g063670 | 46.006 | 313 | 168 | 1 | 1 | 312 | 1 | 313 | 2.62e-103 | 305 |
MS.gene058336.t1 | MTR_8g038210 | 44.728 | 313 | 172 | 1 | 1 | 313 | 1 | 312 | 1.44e-96 | 288 |
MS.gene058336.t1 | MTR_8g038210 | 43.131 | 313 | 177 | 1 | 1 | 313 | 1 | 312 | 2.24e-93 | 280 |
MS.gene058336.t1 | MTR_0276s0050 | 43.564 | 303 | 171 | 0 | 11 | 313 | 12 | 314 | 3.16e-89 | 269 |
MS.gene058336.t1 | MTR_3g018790 | 44.398 | 241 | 134 | 0 | 73 | 313 | 19 | 259 | 2.14e-72 | 224 |
MS.gene058336.t1 | MTR_8g038150 | 37.500 | 304 | 187 | 1 | 11 | 311 | 12 | 315 | 1.80e-67 | 214 |
MS.gene058336.t1 | MTR_6g071605 | 35.463 | 313 | 199 | 3 | 1 | 311 | 1 | 312 | 9.32e-66 | 209 |
MS.gene058336.t1 | MTR_8g107640 | 35.430 | 302 | 193 | 2 | 11 | 311 | 12 | 312 | 2.12e-65 | 208 |
MS.gene058336.t1 | MTR_6g071615 | 36.422 | 313 | 196 | 3 | 1 | 311 | 1 | 312 | 1.34e-63 | 204 |
MS.gene058336.t1 | MTR_1g033560 | 34.211 | 304 | 198 | 2 | 11 | 313 | 12 | 314 | 6.56e-61 | 197 |
MS.gene058336.t1 | MTR_1g112520 | 35.161 | 310 | 197 | 3 | 5 | 311 | 4 | 312 | 9.67e-61 | 196 |
MS.gene058336.t1 | MTR_8g038170 | 39.117 | 317 | 164 | 7 | 14 | 311 | 5 | 311 | 6.66e-60 | 194 |
MS.gene058336.t1 | MTR_8g038170 | 39.117 | 317 | 164 | 7 | 14 | 311 | 5 | 311 | 6.66e-60 | 194 |
MS.gene058336.t1 | MTR_6g071595 | 34.114 | 299 | 195 | 2 | 14 | 311 | 15 | 312 | 3.65e-56 | 184 |
MS.gene058336.t1 | MTR_3g018920 | 41.706 | 211 | 91 | 1 | 1 | 211 | 1 | 179 | 5.06e-56 | 179 |
MS.gene058336.t1 | MTR_6g071595 | 32.636 | 239 | 159 | 2 | 14 | 251 | 15 | 252 | 3.02e-41 | 144 |
MS.gene058336.t1 | MTR_6g028030 | 26.277 | 274 | 194 | 4 | 44 | 309 | 34 | 307 | 2.45e-27 | 108 |
MS.gene058336.t1 | MTR_3g018925 | 46.316 | 95 | 51 | 0 | 219 | 313 | 14 | 108 | 5.65e-21 | 86.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene058336.t1 | AT5G12380 | 58.013 | 312 | 131 | 0 | 1 | 312 | 1 | 312 | 1.72e-135 | 387 |
MS.gene058336.t1 | AT5G10230 | 46.689 | 302 | 161 | 0 | 12 | 313 | 13 | 314 | 3.25e-99 | 295 |
MS.gene058336.t1 | AT5G10220 | 46.203 | 316 | 167 | 2 | 1 | 313 | 1 | 316 | 2.78e-98 | 292 |
MS.gene058336.t1 | AT1G35720 | 44.408 | 304 | 168 | 1 | 11 | 313 | 12 | 315 | 1.07e-96 | 288 |
MS.gene058336.t1 | AT5G65020 | 42.038 | 314 | 180 | 2 | 1 | 312 | 1 | 314 | 3.45e-90 | 272 |
MS.gene058336.t1 | AT5G65020 | 42.561 | 289 | 165 | 1 | 25 | 312 | 11 | 299 | 2.06e-86 | 261 |
MS.gene058336.t1 | AT2G38760 | 41.100 | 309 | 176 | 2 | 11 | 313 | 12 | 320 | 2.17e-79 | 244 |
MS.gene058336.t1 | AT1G68090 | 33.444 | 302 | 200 | 1 | 11 | 311 | 12 | 313 | 2.71e-60 | 195 |
MS.gene058336.t1 | AT2G38750 | 34.740 | 308 | 176 | 6 | 21 | 310 | 15 | 315 | 1.63e-53 | 178 |
MS.gene058336.t1 | AT2G38750 | 34.868 | 304 | 173 | 6 | 25 | 310 | 2 | 298 | 3.32e-53 | 176 |
MS.gene058336.t1 | AT1G68090 | 32.636 | 239 | 160 | 1 | 11 | 248 | 12 | 250 | 3.15e-44 | 152 |
Find 42 sgRNAs with CRISPR-Local
Find 79 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGTGACTTTCAATATCTTTA+AGG | 0.055725 | 2.2:-56444848 | MS.gene058336:CDS |
TTCAATCAATTGATGAAGTA+TGG | 0.245555 | 2.2:+56444936 | None:intergenic |
TTTCAATTGTAGGGATTATC+AGG | 0.253479 | 2.2:-56444670 | MS.gene058336:intron |
CATTGTTTCTCTTCATAAAA+TGG | 0.285540 | 2.2:+56444365 | None:intergenic |
TCGTGCAGAGAAAGATTTAA+AGG | 0.292895 | 2.2:-56444398 | MS.gene058336:CDS |
TTACCTTGGCCAGATATCTT+TGG | 0.294272 | 2.2:+56444587 | None:intergenic |
TAGAAATTCTGAAGAGCTTC+TGG | 0.299957 | 2.2:-56445232 | MS.gene058336:CDS |
ATCTCACGCCTTGAATGATT+TGG | 0.303941 | 2.2:-56444458 | MS.gene058336:CDS |
CGATGACAGCCAAAGATATC+TGG | 0.346203 | 2.2:-56444596 | MS.gene058336:CDS |
TCAATAATCACTTTGTAATC+TGG | 0.360081 | 2.2:+56445267 | None:intergenic |
GTATGGCACAACAGTTAATA+AGG | 0.366846 | 2.2:-56444821 | MS.gene058336:intron |
AATATCTTTAAGGACTTGTA+TGG | 0.373979 | 2.2:-56444838 | MS.gene058336:CDS |
GCACCGATGTATTCATCAAT+TGG | 0.380431 | 2.2:+56444643 | None:intergenic |
ATAGTTTCAGCGTCTTCAAT+TGG | 0.393727 | 2.2:+56445936 | None:intergenic |
TTCATTTGCCAAATCATTCA+AGG | 0.394711 | 2.2:+56444450 | None:intergenic |
ATTCATTTCCCAACAATTCA+AGG | 0.397289 | 2.2:+56444287 | None:intergenic |
AGCTGGATCCATTGTCCAAT+GGG | 0.409595 | 2.2:+56445335 | None:intergenic |
GAGAGGCAACATCTTCTTCA+AGG | 0.414127 | 2.2:+56445172 | None:intergenic |
TTATCAAGAAATTTATCATC+AGG | 0.460775 | 2.2:-56445526 | MS.gene058336:CDS |
TGAACTTTCAGGAAACTTTG+AGG | 0.461813 | 2.2:-56445481 | MS.gene058336:intron |
ATCCATTGTCCAATGGGAAA+TGG | 0.464428 | 2.2:+56445341 | None:intergenic |
TCAAAGAAAACTTGTGAGGC+TGG | 0.474305 | 2.2:-56445550 | MS.gene058336:CDS |
TATTAACGAGGCATTAAAGA+AGG | 0.493668 | 2.2:-56445295 | MS.gene058336:CDS |
AGTGTAGCATCTCTTTCAGC+TGG | 0.500813 | 2.2:+56445318 | None:intergenic |
CAGCTGGATCCATTGTCCAA+TGG | 0.528071 | 2.2:+56445334 | None:intergenic |
CCATTCATGATTCTGTTGCT+AGG | 0.535196 | 2.2:-56444339 | MS.gene058336:CDS |
ATTCTGTTGCTAGGAAGACA+TGG | 0.545887 | 2.2:-56444330 | MS.gene058336:CDS |
ATTAGAGAGCCATTTCCCAT+TGG | 0.552802 | 2.2:-56445350 | MS.gene058336:intron |
CCTAGCAACAGAATCATGAA+TGG | 0.562607 | 2.2:+56444339 | None:intergenic |
AATATCACCGGTAGTTTGAG+AGG | 0.577177 | 2.2:+56445155 | None:intergenic |
GATGTTGCCTCTCAAACTAC+CGG | 0.590150 | 2.2:-56445162 | MS.gene058336:CDS |
ACATACTTTGCGAATATCAC+CGG | 0.599648 | 2.2:+56445143 | None:intergenic |
AGCCATTTCCCATTGGACAA+TGG | 0.600425 | 2.2:-56445343 | MS.gene058336:CDS |
TTCTGTTGCTAGGAAGACAT+GGG | 0.615900 | 2.2:-56444329 | MS.gene058336:CDS |
ACTATCAAGAATGCATGCAA+AGG | 0.624132 | 2.2:-56445918 | MS.gene058336:intron |
CAGCCAAAGATATCTGGCCA+AGG | 0.638343 | 2.2:-56444590 | MS.gene058336:intron |
AATCCAATTGATGAATACAT+CGG | 0.642826 | 2.2:-56444646 | MS.gene058336:CDS |
AAGCTCAAAGAAAACTTGTG+AGG | 0.650998 | 2.2:-56445554 | MS.gene058336:CDS |
AGATGAGTTTGATGAGAATG+TGG | 0.686942 | 2.2:-56444974 | MS.gene058336:CDS |
ATAAGCACTTACAAGTACGA+TGG | 0.694159 | 2.2:-56444997 | MS.gene058336:CDS |
TCTGTTGCTAGGAAGACATG+GGG | 0.714554 | 2.2:-56444328 | MS.gene058336:CDS |
AGATGCTACACTTATTAACG+AGG | 0.731686 | 2.2:-56445307 | MS.gene058336:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AAGGTTTTATAAATTTTATA+AGG | + | chr2.2:56444550-56444569 | None:intergenic | 10.0% |
!!! | AGGTTTTATAAATTTTATAA+GGG | + | chr2.2:56444549-56444568 | None:intergenic | 10.0% |
!!! | TGAATTTATTAAATTTTTGA+AGG | + | chr2.2:56445523-56445542 | None:intergenic | 10.0% |
!! | AGAAATTATTAAATAGAGAA+TGG | + | chr2.2:56445719-56445738 | None:intergenic | 15.0% |
!!! | AATTTGTTATTTTCAATTGT+AGG | - | chr2.2:56445574-56445593 | MS.gene058336:CDS | 15.0% |
!!! | ATTTCAATGGTATAAATTTT+TGG | + | chr2.2:56444886-56444905 | None:intergenic | 15.0% |
!!! | ATTTGTTATTTTCAATTGTA+GGG | - | chr2.2:56445575-56445594 | MS.gene058336:CDS | 15.0% |
!!! | GGTTTTATAAATTTTATAAG+GGG | + | chr2.2:56444548-56444567 | None:intergenic | 15.0% |
!! | ACTCAAAACATATAGAATAA+TGG | + | chr2.2:56444846-56444865 | None:intergenic | 20.0% |
!! | TTATCAAGAAATTTATCATC+AGG | - | chr2.2:56444728-56444747 | MS.gene058336:intron | 20.0% |
!!! | CTAAAATATTTTCGTAACTT+TGG | + | chr2.2:56445693-56445712 | None:intergenic | 20.0% |
!!! | TATGTATGTTAACTTGATTT+AGG | - | chr2.2:56445769-56445788 | MS.gene058336:intron | 20.0% |
! | AAATTCATGCAACAAAATCA+AGG | - | chr2.2:56445536-56445555 | MS.gene058336:CDS | 25.0% |
! | AATCCAATTGATGAATACAT+CGG | - | chr2.2:56445608-56445627 | MS.gene058336:CDS | 25.0% |
! | TCAATAATCACTTTGTAATC+TGG | + | chr2.2:56444990-56445009 | None:intergenic | 25.0% |
! | TGTGACTTTCAATATCTTTA+AGG | - | chr2.2:56445406-56445425 | MS.gene058336:intron | 25.0% |
! | TTCAATCAATTGATGAAGTA+TGG | + | chr2.2:56445321-56445340 | None:intergenic | 25.0% |
!! | AATATCTTTAAGGACTTGTA+TGG | - | chr2.2:56445416-56445435 | MS.gene058336:intron | 25.0% |
!! | ACTTTTATCCTTGAATTGTT+GGG | - | chr2.2:56445959-56445978 | MS.gene058336:CDS | 25.0% |
!! | CATTGTTTCTCTTCATAAAA+TGG | + | chr2.2:56445892-56445911 | None:intergenic | 25.0% |
!!! | AACAGTTTTGTTATGTTACA+TGG | - | chr2.2:56445167-56445186 | MS.gene058336:CDS | 25.0% |
AAATGGCTCTCTAATTTCAA+TGG | + | chr2.2:56444899-56444918 | None:intergenic | 30.0% | |
AAGGTAATCAATTCTAATCG+AGG | - | chr2.2:56444585-56444604 | MS.gene058336:intron | 30.0% | |
ATTCATTTCCCAACAATTCA+AGG | + | chr2.2:56445970-56445989 | None:intergenic | 30.0% | |
CAACAAAATCAAGGATATCA+TGG | - | chr2.2:56445545-56445564 | MS.gene058336:CDS | 30.0% | |
CGATTAGAATTGATTACCTT+TGG | + | chr2.2:56444585-56444604 | None:intergenic | 30.0% | |
GAATTGATTACCTTTGGTAT+AGG | + | chr2.2:56444579-56444598 | None:intergenic | 30.0% | |
TTCATTTGCCAAATCATTCA+AGG | + | chr2.2:56445807-56445826 | None:intergenic | 30.0% | |
TTTCAATTGTAGGGATTATC+AGG | - | chr2.2:56445584-56445603 | MS.gene058336:CDS | 30.0% | |
TTTGAACAAGTGCAACAAAA+TGG | - | chr2.2:56445197-56445216 | MS.gene058336:CDS | 30.0% | |
! | ATGTGATTTTTATCGTGTAC+AGG | - | chr2.2:56444627-56444646 | MS.gene058336:CDS | 30.0% |
! | GACTTTTATCCTTGAATTGT+TGG | - | chr2.2:56445958-56445977 | MS.gene058336:CDS | 30.0% |
! | GTTTTCTTTGAGCTTCATTT+CGG | + | chr2.2:56444695-56444714 | None:intergenic | 30.0% |
! | TATTAACGAGGCATTAAAGA+AGG | - | chr2.2:56444959-56444978 | MS.gene058336:CDS | 30.0% |
! | TTTTTATCGTGTACAGGATT+CGG | - | chr2.2:56444633-56444652 | MS.gene058336:CDS | 30.0% |
!! | ACTATTTTTCATGCAGTTGT+TGG | - | chr2.2:56445226-56445245 | MS.gene058336:CDS | 30.0% |
AAGCTCAAAGAAAACTTGTG+AGG | - | chr2.2:56444700-56444719 | MS.gene058336:intron | 35.0% | |
ACATACTTTGCGAATATCAC+CGG | + | chr2.2:56445114-56445133 | None:intergenic | 35.0% | |
ACATATTCATGTGTCATCAG+TGG | - | chr2.2:56444413-56444432 | MS.gene058336:CDS | 35.0% | |
ACTATCAAGAATGCATGCAA+AGG | - | chr2.2:56444336-56444355 | MS.gene058336:CDS | 35.0% | |
AGATGAGTTTGATGAGAATG+TGG | - | chr2.2:56445280-56445299 | MS.gene058336:CDS | 35.0% | |
AGATGCTACACTTATTAACG+AGG | - | chr2.2:56444947-56444966 | MS.gene058336:CDS | 35.0% | |
ATAAGCACTTACAAGTACGA+TGG | - | chr2.2:56445257-56445276 | MS.gene058336:CDS | 35.0% | |
ATAGTTTCAGCGTCTTCAAT+TGG | + | chr2.2:56444321-56444340 | None:intergenic | 35.0% | |
CAGCTAAAAACTGAACTTTC+AGG | - | chr2.2:56444762-56444781 | MS.gene058336:intron | 35.0% | |
CATATTCATGTGTCATCAGT+GGG | - | chr2.2:56444414-56444433 | MS.gene058336:CDS | 35.0% | |
GTATGGCACAACAGTTAATA+AGG | - | chr2.2:56445433-56445452 | MS.gene058336:intron | 35.0% | |
TCGTGCAGAGAAAGATTTAA+AGG | - | chr2.2:56445856-56445875 | MS.gene058336:intron | 35.0% | |
TGAACTTTCAGGAAACTTTG+AGG | - | chr2.2:56444773-56444792 | MS.gene058336:intron | 35.0% | |
TGATTACCTTTGGTATAGGA+GGG | + | chr2.2:56444575-56444594 | None:intergenic | 35.0% | |
TTGATTACCTTTGGTATAGG+AGG | + | chr2.2:56444576-56444595 | None:intergenic | 35.0% | |
TTTCGTAACTTTGGTTACCT+TGG | + | chr2.2:56445684-56445703 | None:intergenic | 35.0% | |
! | TAGAAATTCTGAAGAGCTTC+TGG | - | chr2.2:56445022-56445041 | MS.gene058336:intron | 35.0% |
! | TTTTATCGTGTACAGGATTC+GGG | - | chr2.2:56444634-56444653 | MS.gene058336:CDS | 35.0% |
!! | AATTCTAATCGAGGCATTGT+CGG | - | chr2.2:56444594-56444613 | MS.gene058336:CDS | 35.0% |
AATATCACCGGTAGTTTGAG+AGG | + | chr2.2:56445102-56445121 | None:intergenic | 40.0% | |
ATCCATTGTCCAATGGGAAA+TGG | + | chr2.2:56444916-56444935 | None:intergenic | 40.0% | |
ATCTCACGCCTTGAATGATT+TGG | - | chr2.2:56445796-56445815 | MS.gene058336:intron | 40.0% | |
ATTAGAGAGCCATTTCCCAT+TGG | - | chr2.2:56444904-56444923 | MS.gene058336:CDS | 40.0% | |
ATTCTGTTGCTAGGAAGACA+TGG | - | chr2.2:56445924-56445943 | MS.gene058336:CDS | 40.0% | |
CCATTCATGATTCTGTTGCT+AGG | - | chr2.2:56445915-56445934 | MS.gene058336:intron | 40.0% | |
CCTAGCAACAGAATCATGAA+TGG | + | chr2.2:56445918-56445937 | None:intergenic | 40.0% | |
TCAAAGAAAACTTGTGAGGC+TGG | - | chr2.2:56444704-56444723 | MS.gene058336:intron | 40.0% | |
TTACCTTGGCCAGATATCTT+TGG | + | chr2.2:56445670-56445689 | None:intergenic | 40.0% | |
TTCTGTTGCTAGGAAGACAT+GGG | - | chr2.2:56445925-56445944 | MS.gene058336:CDS | 40.0% | |
! | CTCTCTTTGAGAACATGGTA+TGG | + | chr2.2:56445471-56445490 | None:intergenic | 40.0% |
! | GCACCGATGTATTCATCAAT+TGG | + | chr2.2:56445614-56445633 | None:intergenic | 40.0% |
! | TGTCTCTCTCTTTGAGAACA+TGG | + | chr2.2:56445476-56445495 | None:intergenic | 40.0% |
AGCCATTTCCCATTGGACAA+TGG | - | chr2.2:56444911-56444930 | MS.gene058336:CDS | 45.0% | |
AGCTGGATCCATTGTCCAAT+GGG | + | chr2.2:56444922-56444941 | None:intergenic | 45.0% | |
AGTGTAGCATCTCTTTCAGC+TGG | + | chr2.2:56444939-56444958 | None:intergenic | 45.0% | |
CCTTTACCCTCCTATACCAA+AGG | - | chr2.2:56444566-56444585 | MS.gene058336:intron | 45.0% | |
CCTTTGGTATAGGAGGGTAA+AGG | + | chr2.2:56444569-56444588 | None:intergenic | 45.0% | |
CGATGACAGCCAAAGATATC+TGG | - | chr2.2:56445658-56445677 | MS.gene058336:intron | 45.0% | |
GAGAGGCAACATCTTCTTCA+AGG | + | chr2.2:56445085-56445104 | None:intergenic | 45.0% | |
GATGTTGCCTCTCAAACTAC+CGG | - | chr2.2:56445092-56445111 | MS.gene058336:intron | 45.0% | |
TCTGTTGCTAGGAAGACATG+GGG | - | chr2.2:56445926-56445945 | MS.gene058336:CDS | 45.0% | |
CAGCCAAAGATATCTGGCCA+AGG | - | chr2.2:56445664-56445683 | MS.gene058336:intron | 50.0% | |
CAGCTGGATCCATTGTCCAA+TGG | + | chr2.2:56444923-56444942 | None:intergenic | 50.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.2 | gene | 56444285 | 56445991 | 56444285 | ID=MS.gene058336 |
chr2.2 | mRNA | 56444285 | 56445991 | 56444285 | ID=MS.gene058336.t1;Parent=MS.gene058336 |
chr2.2 | exon | 56445919 | 56445991 | 56445919 | ID=MS.gene058336.t1.exon1;Parent=MS.gene058336.t1 |
chr2.2 | CDS | 56445919 | 56445991 | 56445919 | ID=cds.MS.gene058336.t1;Parent=MS.gene058336.t1 |
chr2.2 | exon | 56445482 | 56445627 | 56445482 | ID=MS.gene058336.t1.exon2;Parent=MS.gene058336.t1 |
chr2.2 | CDS | 56445482 | 56445627 | 56445482 | ID=cds.MS.gene058336.t1;Parent=MS.gene058336.t1 |
chr2.2 | exon | 56445149 | 56445367 | 56445149 | ID=MS.gene058336.t1.exon3;Parent=MS.gene058336.t1 |
chr2.2 | CDS | 56445149 | 56445367 | 56445149 | ID=cds.MS.gene058336.t1;Parent=MS.gene058336.t1 |
chr2.2 | exon | 56444822 | 56445034 | 56444822 | ID=MS.gene058336.t1.exon4;Parent=MS.gene058336.t1 |
chr2.2 | CDS | 56444822 | 56445034 | 56444822 | ID=cds.MS.gene058336.t1;Parent=MS.gene058336.t1 |
chr2.2 | exon | 56444591 | 56444680 | 56444591 | ID=MS.gene058336.t1.exon5;Parent=MS.gene058336.t1 |
chr2.2 | CDS | 56444591 | 56444680 | 56444591 | ID=cds.MS.gene058336.t1;Parent=MS.gene058336.t1 |
chr2.2 | exon | 56444285 | 56444485 | 56444285 | ID=MS.gene058336.t1.exon6;Parent=MS.gene058336.t1 |
chr2.2 | CDS | 56444285 | 56444485 | 56444285 | ID=cds.MS.gene058336.t1;Parent=MS.gene058336.t1 |
Gene Sequence |
Protein sequence |