Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010215.t1 | XP_003615096.1 | 99.1 | 316 | 3 | 0 | 1 | 316 | 1 | 316 | 2.70E-173 | 617.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010215.t1 | Q9SYT0 | 70.3 | 317 | 93 | 1 | 1 | 316 | 1 | 317 | 6.8e-125 | 448.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010215.t1 | G7KB73 | 99.1 | 316 | 3 | 0 | 1 | 316 | 1 | 316 | 1.9e-173 | 617.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene047020 | MS.gene010215 | PPI |
| MS.gene035327 | MS.gene010215 | PPI |
| MS.gene28077 | MS.gene010215 | PPI |
| MS.gene93736 | MS.gene010215 | PPI |
| MS.gene010215 | MS.gene067369 | PPI |
| MS.gene74945 | MS.gene010215 | PPI |
| MS.gene010215 | MS.gene92405 | PPI |
| MS.gene041553 | MS.gene010215 | PPI |
| MS.gene026445 | MS.gene010215 | PPI |
| MS.gene061777 | MS.gene010215 | PPI |
| MS.gene047030 | MS.gene010215 | PPI |
| MS.gene058336 | MS.gene010215 | PPI |
| MS.gene036493 | MS.gene010215 | PPI |
| MS.gene030809 | MS.gene010215 | PPI |
| MS.gene056195 | MS.gene010215 | PPI |
| MS.gene065031 | MS.gene010215 | PPI |
| MS.gene57291 | MS.gene010215 | PPI |
| MS.gene010215 | MS.gene87117 | PPI |
| MS.gene76197 | MS.gene010215 | PPI |
| MS.gene45772 | MS.gene010215 | PPI |
| MS.gene85401 | MS.gene010215 | PPI |
| MS.gene55897 | MS.gene010215 | PPI |
| MS.gene016642 | MS.gene010215 | PPI |
| MS.gene040887 | MS.gene010215 | PPI |
| MS.gene010215 | MS.gene040097 | PPI |
| MS.gene010215 | MS.gene27444 | PPI |
| MS.gene029299 | MS.gene010215 | PPI |
| MS.gene00058 | MS.gene010215 | PPI |
| MS.gene010215 | MS.gene67887 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010215.t1 | MTR_5g063670 | 99.051 | 316 | 3 | 0 | 1 | 316 | 1 | 316 | 0.0 | 640 |
| MS.gene010215.t1 | MTR_0276s0050 | 66.984 | 315 | 104 | 0 | 1 | 315 | 1 | 315 | 2.94e-151 | 427 |
| MS.gene010215.t1 | MTR_8g038220 | 48.254 | 315 | 162 | 1 | 1 | 315 | 1 | 314 | 8.86e-100 | 296 |
| MS.gene010215.t1 | MTR_2g031980 | 45.223 | 314 | 171 | 1 | 1 | 314 | 1 | 313 | 1.58e-99 | 295 |
| MS.gene010215.t1 | MTR_3g018780 | 46.667 | 315 | 167 | 1 | 1 | 315 | 1 | 314 | 2.07e-99 | 295 |
| MS.gene010215.t1 | MTR_8g038220 | 47.937 | 315 | 162 | 1 | 1 | 315 | 1 | 313 | 5.77e-99 | 294 |
| MS.gene010215.t1 | MTR_8g038210 | 47.302 | 315 | 164 | 2 | 1 | 315 | 1 | 313 | 1.43e-97 | 290 |
| MS.gene010215.t1 | MTR_3g018790 | 46.349 | 315 | 168 | 1 | 1 | 315 | 1 | 314 | 5.12e-97 | 289 |
| MS.gene010215.t1 | MTR_8g038210 | 46.349 | 315 | 167 | 2 | 1 | 315 | 1 | 313 | 5.78e-94 | 281 |
| MS.gene010215.t1 | MTR_8g038180 | 46.795 | 312 | 165 | 1 | 1 | 312 | 1 | 311 | 1.50e-92 | 278 |
| MS.gene010215.t1 | MTR_8g038150 | 43.175 | 315 | 176 | 1 | 1 | 312 | 1 | 315 | 3.15e-82 | 251 |
| MS.gene010215.t1 | MTR_8g107640 | 37.778 | 315 | 190 | 6 | 1 | 312 | 1 | 312 | 6.38e-69 | 217 |
| MS.gene010215.t1 | MTR_3g018790 | 44.215 | 242 | 135 | 0 | 74 | 315 | 19 | 260 | 2.91e-68 | 214 |
| MS.gene010215.t1 | MTR_1g033560 | 35.873 | 315 | 200 | 2 | 1 | 314 | 1 | 314 | 3.15e-65 | 208 |
| MS.gene010215.t1 | MTR_6g071605 | 35.938 | 320 | 195 | 5 | 1 | 315 | 1 | 315 | 3.80e-64 | 205 |
| MS.gene010215.t1 | MTR_6g071615 | 37.500 | 320 | 190 | 5 | 1 | 315 | 1 | 315 | 8.35e-64 | 204 |
| MS.gene010215.t1 | MTR_8g038170 | 38.608 | 316 | 169 | 5 | 14 | 312 | 4 | 311 | 3.92e-62 | 200 |
| MS.gene010215.t1 | MTR_8g038170 | 38.608 | 316 | 169 | 5 | 14 | 312 | 4 | 311 | 3.92e-62 | 200 |
| MS.gene010215.t1 | MTR_1g112520 | 36.278 | 317 | 192 | 5 | 1 | 312 | 1 | 312 | 2.16e-61 | 198 |
| MS.gene010215.t1 | MTR_6g071595 | 35.099 | 302 | 188 | 3 | 15 | 312 | 15 | 312 | 1.55e-55 | 183 |
| MS.gene010215.t1 | MTR_3g018920 | 44.340 | 212 | 85 | 2 | 1 | 212 | 1 | 179 | 2.53e-52 | 170 |
| MS.gene010215.t1 | MTR_6g071595 | 34.167 | 240 | 150 | 3 | 15 | 250 | 15 | 250 | 1.08e-39 | 140 |
| MS.gene010215.t1 | MTR_6g028030 | 28.364 | 275 | 189 | 4 | 44 | 310 | 33 | 307 | 7.01e-29 | 113 |
| MS.gene010215.t1 | MTR_3g018925 | 38.542 | 96 | 59 | 0 | 220 | 315 | 14 | 109 | 3.54e-18 | 79.0 |
| MS.gene010215.t1 | MTR_8g038090 | 39.080 | 87 | 51 | 2 | 228 | 312 | 4 | 90 | 6.00e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010215.t1 | AT1G35720 | 70.347 | 317 | 93 | 1 | 1 | 316 | 1 | 317 | 8.28e-165 | 461 |
| MS.gene010215.t1 | AT5G65020 | 64.984 | 317 | 110 | 1 | 1 | 316 | 1 | 317 | 7.37e-154 | 434 |
| MS.gene010215.t1 | AT5G10230 | 65.190 | 316 | 110 | 0 | 1 | 316 | 1 | 316 | 1.20e-153 | 433 |
| MS.gene010215.t1 | AT5G10220 | 63.208 | 318 | 115 | 1 | 1 | 316 | 1 | 318 | 1.61e-149 | 422 |
| MS.gene010215.t1 | AT5G65020 | 65.529 | 293 | 100 | 1 | 25 | 316 | 10 | 302 | 4.21e-143 | 405 |
| MS.gene010215.t1 | AT5G12380 | 50.479 | 313 | 154 | 1 | 1 | 313 | 1 | 312 | 1.91e-111 | 326 |
| MS.gene010215.t1 | AT2G38760 | 40.252 | 318 | 184 | 2 | 1 | 312 | 1 | 318 | 7.62e-76 | 235 |
| MS.gene010215.t1 | AT1G68090 | 33.546 | 313 | 207 | 1 | 1 | 312 | 1 | 313 | 2.79e-62 | 200 |
| MS.gene010215.t1 | AT2G38750 | 35.938 | 320 | 179 | 7 | 16 | 315 | 6 | 319 | 1.50e-49 | 167 |
| MS.gene010215.t1 | AT2G38750 | 36.156 | 307 | 173 | 6 | 26 | 315 | 2 | 302 | 3.99e-49 | 166 |
| MS.gene010215.t1 | AT1G68090 | 31.200 | 250 | 171 | 1 | 1 | 249 | 1 | 250 | 1.18e-43 | 150 |
Find 61 sgRNAs with CRISPR-Local
Find 135 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCAGAGGCTGGTTCATCTT+TGG | 0.260570 | 5.1:-48871548 | MS.gene010215:intron |
| AAGGACAGGTACTCGTCTTT+TGG | 0.311374 | 5.1:+48870802 | None:intergenic |
| TCTAATTAAATTACCTGAAA+AGG | 0.359317 | 5.1:+48872802 | None:intergenic |
| AGGATTGATTATATCGATCT+TGG | 0.359661 | 5.1:-48872271 | MS.gene010215:CDS |
| TGACTACGAGAAAATGCTTT+TGG | 0.381008 | 5.1:-48870569 | MS.gene010215:CDS |
| AAGAACTGACCAGAGGTAAT+AGG | 0.387763 | 5.1:+48871113 | None:intergenic |
| GACATCGAGCAATCAGGTTC+TGG | 0.389191 | 5.1:-48871469 | MS.gene010215:CDS |
| AAGTCTTAGCGTAAGCTTCT+CGG | 0.400927 | 5.1:+48872217 | None:intergenic |
| TCTTGACCGTGCCATTGTTA+AGG | 0.405002 | 5.1:-48870602 | MS.gene010215:CDS |
| ACTGGTAAGCTCTTTGTTCA+AGG | 0.435992 | 5.1:+48872173 | None:intergenic |
| TCGGAGCTGTTCAACGTCAT+CGG | 0.458704 | 5.1:+48872829 | None:intergenic |
| GGATTGATTATATCGATCTT+GGG | 0.459351 | 5.1:-48872270 | MS.gene010215:CDS |
| TGTTCAACGTCATCGGAGAC+AGG | 0.468046 | 5.1:+48872836 | None:intergenic |
| ATAACGACGATGATTTCATC+AGG | 0.468843 | 5.1:-48871006 | MS.gene010215:CDS |
| AATCACTACAAGGATGCATT+CGG | 0.471381 | 5.1:-48870941 | MS.gene010215:CDS |
| GTAGGTTGGGGAACGAATGA+AGG | 0.472081 | 5.1:-48872291 | MS.gene010215:intron |
| ATCTTTGCAAAGTACCTCTC+GGG | 0.480871 | 5.1:+48870748 | None:intergenic |
| TGTCTAGCTCCTATTACCTC+TGG | 0.487818 | 5.1:-48871122 | MS.gene010215:intron |
| CTGATGAAGGAGCTCTTACA+AGG | 0.491225 | 5.1:-48870696 | MS.gene010215:CDS |
| GCACGAGAAGATTTCAAAGA+AGG | 0.494364 | 5.1:-48871032 | MS.gene010215:CDS |
| GATGTTGCTTACCACACAAC+GGG | 0.503228 | 5.1:-48871360 | MS.gene010215:CDS |
| TTATGAAGAAGATCTCATAA+AGG | 0.507106 | 5.1:-48872196 | MS.gene010215:CDS |
| TATCTTTGCAAAGTACCTCT+CGG | 0.510736 | 5.1:+48870747 | None:intergenic |
| GGTCAGTTCTTACCGCTATG+AGG | 0.512288 | 5.1:-48871101 | MS.gene010215:CDS |
| TTATATCGATCTTGGGTCAT+CGG | 0.522845 | 5.1:-48872263 | MS.gene010215:CDS |
| AAGATGGACATCGAGCAATC+AGG | 0.535668 | 5.1:-48871475 | MS.gene010215:CDS |
| CAAACGAAGCAACTAAAAGA+TGG | 0.539747 | 5.1:-48871491 | MS.gene010215:CDS |
| AACAAGCGAGGAACTGATGA+AGG | 0.545290 | 5.1:-48870709 | MS.gene010215:CDS |
| GTCAGTTCTTACCGCTATGA+GGG | 0.561899 | 5.1:-48871100 | MS.gene010215:CDS |
| TTCAACGTCATCGGAGACAG+GGG | 0.564720 | 5.1:+48872838 | None:intergenic |
| AAGATCGACTGTCAAGTGCT+TGG | 0.566822 | 5.1:-48870776 | MS.gene010215:CDS |
| TGCTACTTTGAATCACTACA+AGG | 0.568307 | 5.1:-48870951 | MS.gene010215:CDS |
| TGATTTGAAAATTATAGCTG+AGG | 0.571271 | 5.1:-48870650 | MS.gene010215:CDS |
| TTAACTGACCTCAAAATCAC+TGG | 0.572067 | 5.1:+48872155 | None:intergenic |
| GTTCAACGTCATCGGAGACA+GGG | 0.574809 | 5.1:+48872837 | None:intergenic |
| ATCGAGCAATCAGGTTCTGG+TGG | 0.577409 | 5.1:-48871466 | MS.gene010215:CDS |
| CAGTCGATCTTAGCAAGGAC+AGG | 0.577483 | 5.1:+48870788 | None:intergenic |
| GTCATCGGAATGAGGTTCAA+AGG | 0.585027 | 5.1:-48872248 | MS.gene010215:CDS |
| GCCATTGTTAAGGACACCAC+TGG | 0.594159 | 5.1:-48870592 | MS.gene010215:CDS |
| TTAACAATGGCACGGTCAAG+AGG | 0.594943 | 5.1:+48870604 | None:intergenic |
| TTATAGCTGAGGAGTATCAA+AGG | 0.599060 | 5.1:-48870639 | MS.gene010215:CDS |
| AGGAGCTCTTACAAGGGTGG+TGG | 0.601483 | 5.1:-48870689 | MS.gene010215:CDS |
| GATCTTGGGTCATCGGAATG+AGG | 0.611347 | 5.1:-48872256 | MS.gene010215:CDS |
| TCGGAATGAGGTTCAAAGGA+AGG | 0.612348 | 5.1:-48872244 | MS.gene010215:CDS |
| TACGGAAGTCTCCCGTTGTG+TGG | 0.624082 | 5.1:+48871349 | None:intergenic |
| ACCAGTGGTGTCCTTAACAA+TGG | 0.632957 | 5.1:+48870591 | None:intergenic |
| TAACAATGGCACGGTCAAGA+GGG | 0.633235 | 5.1:+48870605 | None:intergenic |
| CTTTGCAAAGATAATTCGTG+AGG | 0.652367 | 5.1:-48870737 | MS.gene010215:CDS |
| TGGTGTCCTTAACAATGGCA+CGG | 0.661335 | 5.1:+48870596 | None:intergenic |
| TGAAGGAGCTCTTACAAGGG+TGG | 0.668685 | 5.1:-48870692 | MS.gene010215:CDS |
| TGATGAAGGAGCTCTTACAA+GGG | 0.669212 | 5.1:-48870695 | MS.gene010215:CDS |
| CTTGACAGTCGATCTTAGCA+AGG | 0.671806 | 5.1:+48870783 | None:intergenic |
| CGTGAGGCTATCAACAAGCG+AGG | 0.677690 | 5.1:-48870721 | MS.gene010215:CDS |
| TCAACGTCATCGGAGACAGG+GGG | 0.683510 | 5.1:+48872839 | None:intergenic |
| CTTGACTATAGCAAAAGCCG+AGG | 0.685041 | 5.1:-48871065 | MS.gene010215:CDS |
| AGATGTTGCTTACCACACAA+CGG | 0.692993 | 5.1:-48871361 | MS.gene010215:CDS |
| CACAACGGGAGACTTCCGTA+AGG | 0.704750 | 5.1:-48871346 | MS.gene010215:intron |
| ATTCGGAAAAGATATAAACA+AGG | 0.714446 | 5.1:-48870924 | MS.gene010215:intron |
| TAGCTGAGGAGTATCAAAGG+AGG | 0.718780 | 5.1:-48870636 | MS.gene010215:CDS |
| TGACTTCATCTCCCTCATAG+CGG | 0.737910 | 5.1:+48871089 | None:intergenic |
| TAGCGGTAAGAACTGACCAG+AGG | 0.741450 | 5.1:+48871106 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTAAAACAAAAATATGATTA+CGG | + | chr5.1:48870683-48870702 | None:intergenic | 15.0% |
| !! | TATTATTAATCATATTTACG+TGG | - | chr5.1:48870655-48870674 | MS.gene010215:CDS | 15.0% |
| !!! | AAATCTAAAATCCAAATTAA+AGG | + | chr5.1:48871291-48871310 | None:intergenic | 15.0% |
| !! | TAAAATCCAAATTAAAGGTT+TGG | + | chr5.1:48871286-48871305 | None:intergenic | 20.0% |
| !! | TCTAATTAAATTACCTGAAA+AGG | + | chr5.1:48870613-48870632 | None:intergenic | 20.0% |
| !! | TTTGTAAGTTATTTGATTGA+TGG | - | chr5.1:48870707-48870726 | MS.gene010215:CDS | 20.0% |
| !!! | ATAATACGTGTATCATTTTT+TGG | - | chr5.1:48871804-48871823 | MS.gene010215:intron | 20.0% |
| !!! | ATTAAGTTGTTTATCCAAAA+AGG | + | chr5.1:48871339-48871358 | None:intergenic | 20.0% |
| !!! | ATTGGCTCAAAAAATTAATA+CGG | + | chr5.1:48872568-48872587 | None:intergenic | 20.0% |
| !!! | ATTTGGATTTTAGATTTGAA+TGG | - | chr5.1:48871294-48871313 | MS.gene010215:intron | 20.0% |
| !!! | TTAAATTTTCTATTCATCAG+AGG | - | chr5.1:48871849-48871868 | MS.gene010215:intron | 20.0% |
| !!! | TTTTCATATAAGCTATAAGA+TGG | - | chr5.1:48871404-48871423 | MS.gene010215:CDS | 20.0% |
| ! | ATTCGGAAAAGATATAAACA+AGG | - | chr5.1:48872488-48872507 | MS.gene010215:intron | 25.0% |
| ! | TCAAATGAACAAATCTAAAC+TGG | - | chr5.1:48871541-48871560 | MS.gene010215:CDS | 25.0% |
| ! | TGATTTGAAAATTATAGCTG+AGG | - | chr5.1:48872762-48872781 | MS.gene010215:intron | 25.0% |
| ! | TTATGAAGAAGATCTCATAA+AGG | - | chr5.1:48871216-48871235 | MS.gene010215:intron | 25.0% |
| ! | TTGATTTATGATTGTGTTGT+AGG | - | chr5.1:48871103-48871122 | MS.gene010215:CDS | 25.0% |
| ! | TTTGTATTTAGACTAAATGC+AGG | - | chr5.1:48872182-48872201 | MS.gene010215:CDS | 25.0% |
| !! | AAAAGATGTTCTGTTGATTA+AGG | - | chr5.1:48871713-48871732 | MS.gene010215:intron | 25.0% |
| !! | AAAATGCTTTTGGCAATTTT+AGG | - | chr5.1:48872853-48872872 | MS.gene010215:CDS | 25.0% |
| !! | AAAGATGTTCTGTTGATTAA+GGG | - | chr5.1:48871714-48871733 | MS.gene010215:intron | 25.0% |
| !! | TAATCAACAGAACATCTTTT+TGG | + | chr5.1:48871713-48871732 | None:intergenic | 25.0% |
| !!! | GTACTGTGTTTTTTGTATTT+AGG | - | chr5.1:48871017-48871036 | MS.gene010215:CDS | 25.0% |
| AATAAGCTGAAAACAGCTTA+TGG | - | chr5.1:48871457-48871476 | MS.gene010215:CDS | 30.0% | |
| AATCAATCAGTAGTACCTTA+CGG | + | chr5.1:48872084-48872103 | None:intergenic | 30.0% | |
| ACACGTATTATTCTTGTTAC+AGG | + | chr5.1:48871795-48871814 | None:intergenic | 30.0% | |
| AGGATTGATTATATCGATCT+TGG | - | chr5.1:48871141-48871160 | MS.gene010215:intron | 30.0% | |
| CTGATTAAAACCTGACTTTA+GGG | - | chr5.1:48871687-48871706 | MS.gene010215:intron | 30.0% | |
| GGATTGATTATATCGATCTT+GGG | - | chr5.1:48871142-48871161 | MS.gene010215:intron | 30.0% | |
| TCTGATTAAAACCTGACTTT+AGG | - | chr5.1:48871686-48871705 | MS.gene010215:intron | 30.0% | |
| TTATGATTGTGTTGTAGGTT+GGG | - | chr5.1:48871108-48871127 | MS.gene010215:CDS | 30.0% | |
| TTCAGAGTTTAACATGTTTC+TGG | - | chr5.1:48871069-48871088 | MS.gene010215:CDS | 30.0% | |
| TTTATGATTGTGTTGTAGGT+TGG | - | chr5.1:48871107-48871126 | MS.gene010215:CDS | 30.0% | |
| ! | AAGATGTTCTGTTGATTAAG+GGG | - | chr5.1:48871715-48871734 | MS.gene010215:intron | 30.0% |
| ! | AATTACCTGAAAAGGCTTTT+CGG | + | chr5.1:48870605-48870624 | None:intergenic | 30.0% |
| ! | TTTTAGACTTGGATCCTTTT+TGG | - | chr5.1:48871322-48871341 | MS.gene010215:intron | 30.0% |
| !! | AGTCAGGTTTTAATCAGAAT+TGG | + | chr5.1:48871684-48871703 | None:intergenic | 30.0% |
| !! | ATTTGTGACACTTTGAGTTT+TGG | - | chr5.1:48871640-48871659 | MS.gene010215:intron | 30.0% |
| !! | GTCAGGTTTTAATCAGAATT+GGG | + | chr5.1:48871683-48871702 | None:intergenic | 30.0% |
| !! | TCTAAACTGGCTTTGAATTA+TGG | - | chr5.1:48871554-48871573 | MS.gene010215:intron | 30.0% |
| !! | TTCATAGATCAGTTTTGACA+TGG | + | chr5.1:48870929-48870948 | None:intergenic | 30.0% |
| !!! | ATTTTTTGAGCCAATGTTGT+AGG | - | chr5.1:48872573-48872592 | MS.gene010215:intron | 30.0% |
| !!! | GTTTTTTGTATTTAGGCTTG+TGG | - | chr5.1:48871024-48871043 | MS.gene010215:CDS | 30.0% |
| !!! | TCAACTGTTTTTTGCAAAGA+AGG | - | chr5.1:48871994-48872013 | MS.gene010215:intron | 30.0% |
| AAGTATATACAGGTACATCC+TGG | + | chr5.1:48871601-48871620 | None:intergenic | 35.0% | |
| AATCACTACAAGGATGCATT+CGG | - | chr5.1:48872471-48872490 | MS.gene010215:intron | 35.0% | |
| AATTATGGAATCTCACTCAG+TGG | - | chr5.1:48871569-48871588 | MS.gene010215:intron | 35.0% | |
| ATAACGACGATGATTTCATC+AGG | - | chr5.1:48872406-48872425 | MS.gene010215:intron | 35.0% | |
| CAAACGAAGCAACTAAAAGA+TGG | - | chr5.1:48871921-48871940 | MS.gene010215:intron | 35.0% | |
| CTTTGCAAAGATAATTCGTG+AGG | - | chr5.1:48872675-48872694 | MS.gene010215:intron | 35.0% | |
| GTTGTCAATACCAAACAGTT+TGG | + | chr5.1:48871757-48871776 | None:intergenic | 35.0% | |
| TAAGGGCCAAACCTTTAATT+TGG | - | chr5.1:48871277-48871296 | MS.gene010215:intron | 35.0% | |
| TATGATTGTGTTGTAGGTTG+GGG | - | chr5.1:48871109-48871128 | MS.gene010215:CDS | 35.0% | |
| TCTTTCAGATCCTACAACAT+TGG | + | chr5.1:48872586-48872605 | None:intergenic | 35.0% | |
| TTAACTGACCTCAAAATCAC+TGG | + | chr5.1:48871260-48871279 | None:intergenic | 35.0% | |
| TTATATCGATCTTGGGTCAT+CGG | - | chr5.1:48871149-48871168 | MS.gene010215:intron | 35.0% | |
| ! | AGATGTTCTGTTGATTAAGG+GGG | - | chr5.1:48871716-48871735 | MS.gene010215:intron | 35.0% |
| ! | ATTTTCTATTCATCAGAGGC+TGG | - | chr5.1:48871853-48871872 | MS.gene010215:intron | 35.0% |
| ! | TATCTTTGCAAAGTACCTCT+CGG | + | chr5.1:48872668-48872687 | None:intergenic | 35.0% |
| ! | TGACTACGAGAAAATGCTTT+TGG | - | chr5.1:48872843-48872862 | MS.gene010215:CDS | 35.0% |
| !! | TGCTACTTTGAATCACTACA+AGG | - | chr5.1:48872461-48872480 | MS.gene010215:intron | 35.0% |
| !! | TTATAGCTGAGGAGTATCAA+AGG | - | chr5.1:48872773-48872792 | MS.gene010215:intron | 35.0% |
| !!! | AGTGATTTTGAGGTCAGTTA+AGG | - | chr5.1:48871259-48871278 | MS.gene010215:intron | 35.0% |
| !!! | GAATGGATTGCTTTTAGACT+TGG | - | chr5.1:48871311-48871330 | MS.gene010215:intron | 35.0% |
| !!! | GATGGTTTTGTAAGTTATCC+TGG | - | chr5.1:48871422-48871441 | MS.gene010215:CDS | 35.0% |
| !!! | GTGATTTTGAGGTCAGTTAA+GGG | - | chr5.1:48871260-48871279 | MS.gene010215:intron | 35.0% |
| !!! | TCATCAGGATTTTAGCTACA+AGG | - | chr5.1:48872421-48872440 | MS.gene010215:intron | 35.0% |
| AAGAACTGACCAGAGGTAAT+AGG | + | chr5.1:48872302-48872321 | None:intergenic | 40.0% | |
| AAGTCTTAGCGTAAGCTTCT+CGG | + | chr5.1:48871198-48871217 | None:intergenic | 40.0% | |
| AAGTTATCCTGGAGAGCTTA+TGG | - | chr5.1:48871433-48871452 | MS.gene010215:CDS | 40.0% | |
| ACTGGTAAGCTCTTTGTTCA+AGG | + | chr5.1:48871242-48871261 | None:intergenic | 40.0% | |
| CAATACCAAACAGTTTGGCT+TGG | + | chr5.1:48871752-48871771 | None:intergenic | 40.0% | |
| CTTATTTCCATAAGCTCTCC+AGG | + | chr5.1:48871443-48871462 | None:intergenic | 40.0% | |
| GCACGAGAAGATTTCAAAGA+AGG | - | chr5.1:48872380-48872399 | MS.gene010215:intron | 40.0% | |
| GCGCTCATCTAAGTATATAC+AGG | + | chr5.1:48871611-48871630 | None:intergenic | 40.0% | |
| TGATGAAGGAGCTCTTACAA+GGG | - | chr5.1:48872717-48872736 | MS.gene010215:intron | 40.0% | |
| ! | AGAGCTTACCAGTGATTTTG+AGG | - | chr5.1:48871249-48871268 | MS.gene010215:intron | 40.0% |
| ! | AGATGTTGCTTACCACACAA+CGG | - | chr5.1:48872051-48872070 | MS.gene010215:intron | 40.0% |
| ! | ATCTTTGCAAAGTACCTCTC+GGG | + | chr5.1:48872667-48872686 | None:intergenic | 40.0% |
| ! | GATGTTCTGTTGATTAAGGG+GGG | - | chr5.1:48871717-48871736 | MS.gene010215:intron | 40.0% |
| !! | ATCTTTTTGGCCCTAAAGTC+AGG | + | chr5.1:48871700-48871719 | None:intergenic | 40.0% |
| AACAAGCGAGGAACTGATGA+AGG | - | chr5.1:48872703-48872722 | MS.gene010215:intron | 45.0% | |
| AAGATCGACTGTCAAGTGCT+TGG | - | chr5.1:48872636-48872655 | MS.gene010215:intron | 45.0% | |
| AAGATGGACATCGAGCAATC+AGG | - | chr5.1:48871937-48871956 | MS.gene010215:intron | 45.0% | |
| ACCAGTGGTGTCCTTAACAA+TGG | + | chr5.1:48872824-48872843 | None:intergenic | 45.0% | |
| CAAAAATGCATCGCGTTCAG+CGG | + | chr5.1:48871900-48871919 | None:intergenic | 45.0% | |
| CTGATGAAGGAGCTCTTACA+AGG | - | chr5.1:48872716-48872735 | MS.gene010215:intron | 45.0% | |
| CTTGACAGTCGATCTTAGCA+AGG | + | chr5.1:48872632-48872651 | None:intergenic | 45.0% | |
| CTTGACTATAGCAAAAGCCG+AGG | - | chr5.1:48872347-48872366 | MS.gene010215:intron | 45.0% | |
| GTCAGTTCTTACCGCTATGA+GGG | - | chr5.1:48872312-48872331 | MS.gene010215:intron | 45.0% | |
| GTCATCGGAATGAGGTTCAA+AGG | - | chr5.1:48871164-48871183 | MS.gene010215:intron | 45.0% | |
| GTTACTGATCTCGAGGCTAT+CGG | + | chr5.1:48870861-48870880 | None:intergenic | 45.0% | |
| TAACAATGGCACGGTCAAGA+GGG | + | chr5.1:48872810-48872829 | None:intergenic | 45.0% | |
| TCGGAATGAGGTTCAAAGGA+AGG | - | chr5.1:48871168-48871187 | MS.gene010215:intron | 45.0% | |
| TGACTTCATCTCCCTCATAG+CGG | + | chr5.1:48872326-48872345 | None:intergenic | 45.0% | |
| TGATGCCAAGCCAAACTGTT+TGG | - | chr5.1:48871744-48871763 | MS.gene010215:intron | 45.0% | |
| TGGTGTCCTTAACAATGGCA+CGG | + | chr5.1:48872819-48872838 | None:intergenic | 45.0% | |
| TTAACAATGGCACGGTCAAG+AGG | + | chr5.1:48872811-48872830 | None:intergenic | 45.0% | |
| ! | AAGGACAGGTACTCGTCTTT+TGG | + | chr5.1:48872613-48872632 | None:intergenic | 45.0% |
| ! | ATCAGAGGCTGGTTCATCTT+TGG | - | chr5.1:48871864-48871883 | MS.gene010215:intron | 45.0% |
| ! | CATTTTCTCGTAGTCACCAG+TGG | + | chr5.1:48872839-48872858 | None:intergenic | 45.0% |
| ! | GATGTTGCTTACCACACAAC+GGG | - | chr5.1:48872052-48872071 | MS.gene010215:intron | 45.0% |
| ! | TCTTGACCGTGCCATTGTTA+AGG | - | chr5.1:48872810-48872829 | MS.gene010215:intron | 45.0% |
| ! | TGTCTAGCTCCTATTACCTC+TGG | - | chr5.1:48872290-48872309 | MS.gene010215:CDS | 45.0% |
| !! | CTCGTGCAGTATTTTTGCCT+CGG | + | chr5.1:48872367-48872386 | None:intergenic | 45.0% |
| !! | TAGCTGAGGAGTATCAAAGG+AGG | - | chr5.1:48872776-48872795 | MS.gene010215:intron | 45.0% |
| !!! | ATTAAAAATTAGTTTATTTT+TGG | - | chr5.1:48872266-48872285 | MS.gene010215:CDS | 5.0% |
| CAGTCGATCTTAGCAAGGAC+AGG | + | chr5.1:48872627-48872646 | None:intergenic | 50.0% | |
| GACATCGAGCAATCAGGTTC+TGG | - | chr5.1:48871943-48871962 | MS.gene010215:intron | 50.0% | |
| GATCTTGGGTCATCGGAATG+AGG | - | chr5.1:48871156-48871175 | MS.gene010215:intron | 50.0% | |
| GCCATTGTTAAGGACACCAC+TGG | - | chr5.1:48872820-48872839 | MS.gene010215:CDS | 50.0% | |
| GGTCAGTTCTTACCGCTATG+AGG | - | chr5.1:48872311-48872330 | MS.gene010215:intron | 50.0% | |
| GTTCAACGTCATCGGAGACA+GGG | + | chr5.1:48870578-48870597 | None:intergenic | 50.0% | |
| TAGCGGTAAGAACTGACCAG+AGG | + | chr5.1:48872309-48872328 | None:intergenic | 50.0% | |
| TCGGAGCTGTTCAACGTCAT+CGG | + | chr5.1:48870586-48870605 | None:intergenic | 50.0% | |
| TGAAGGAGCTCTTACAAGGG+TGG | - | chr5.1:48872720-48872739 | MS.gene010215:intron | 50.0% | |
| TGCGTCACGCAGTTACTACA+GGG | - | chr5.1:48870885-48870904 | MS.gene010215:intron | 50.0% | |
| TGTTCAACGTCATCGGAGAC+AGG | + | chr5.1:48870579-48870598 | None:intergenic | 50.0% | |
| TTCAACGTCATCGGAGACAG+GGG | + | chr5.1:48870577-48870596 | None:intergenic | 50.0% | |
| ! | ATCGAGCAATCAGGTTCTGG+TGG | - | chr5.1:48871946-48871965 | MS.gene010215:intron | 50.0% |
| ! | CAGCTCCGAAAAGCCTTTTC+AGG | - | chr5.1:48870597-48870616 | MS.gene010215:CDS | 50.0% |
| ! | CGCTGAACGCGATGCATTTT+TGG | - | chr5.1:48871898-48871917 | MS.gene010215:intron | 50.0% |
| ! | GTAGGTTGGGGAACGAATGA+AGG | - | chr5.1:48871121-48871140 | MS.gene010215:intron | 50.0% |
| !! | AGTGCTTGGTTTTTCCCGAG+AGG | - | chr5.1:48872650-48872669 | MS.gene010215:intron | 50.0% |
| AGACAGGGGGAAGAGGATGA+GGG | + | chr5.1:48870563-48870582 | None:intergenic | 55.0% | |
| AGGAGCTCTTACAAGGGTGG+TGG | - | chr5.1:48872723-48872742 | MS.gene010215:intron | 55.0% | |
| CACAACGGGAGACTTCCGTA+AGG | - | chr5.1:48872066-48872085 | MS.gene010215:intron | 55.0% | |
| CGTGAGGCTATCAACAAGCG+AGG | - | chr5.1:48872691-48872710 | MS.gene010215:intron | 55.0% | |
| CTCACTCAGTGGTAGACTCC+AGG | - | chr5.1:48871580-48871599 | MS.gene010215:intron | 55.0% | |
| GCACGCAGTTACTGATCTCG+AGG | + | chr5.1:48870868-48870887 | None:intergenic | 55.0% | |
| GTGCGTCACGCAGTTACTAC+AGG | - | chr5.1:48870884-48870903 | MS.gene010215:intron | 55.0% | |
| TACGGAAGTCTCCCGTTGTG+TGG | + | chr5.1:48872066-48872085 | None:intergenic | 55.0% | |
| TCAACGTCATCGGAGACAGG+GGG | + | chr5.1:48870576-48870595 | None:intergenic | 55.0% | |
| GAGACAGGGGGAAGAGGATG+AGG | + | chr5.1:48870564-48870583 | None:intergenic | 60.0% | |
| TCATCGGAGACAGGGGGAAG+AGG | + | chr5.1:48870570-48870589 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 48870543 | 48872891 | 48870543 | ID=MS.gene010215 |
| chr5.1 | mRNA | 48870543 | 48872891 | 48870543 | ID=MS.gene010215.t1;Parent=MS.gene010215 |
| chr5.1 | exon | 48872816 | 48872891 | 48872816 | ID=MS.gene010215.t1.exon1;Parent=MS.gene010215.t1 |
| chr5.1 | CDS | 48872816 | 48872891 | 48872816 | ID=cds.MS.gene010215.t1;Parent=MS.gene010215.t1 |
| chr5.1 | exon | 48872164 | 48872309 | 48872164 | ID=MS.gene010215.t1.exon2;Parent=MS.gene010215.t1 |
| chr5.1 | CDS | 48872164 | 48872309 | 48872164 | ID=cds.MS.gene010215.t1;Parent=MS.gene010215.t1 |
| chr5.1 | exon | 48871347 | 48871565 | 48871347 | ID=MS.gene010215.t1.exon3;Parent=MS.gene010215.t1 |
| chr5.1 | CDS | 48871347 | 48871565 | 48871347 | ID=cds.MS.gene010215.t1;Parent=MS.gene010215.t1 |
| chr5.1 | exon | 48870925 | 48871137 | 48870925 | ID=MS.gene010215.t1.exon4;Parent=MS.gene010215.t1 |
| chr5.1 | CDS | 48870925 | 48871137 | 48870925 | ID=cds.MS.gene010215.t1;Parent=MS.gene010215.t1 |
| chr5.1 | exon | 48870543 | 48870839 | 48870543 | ID=MS.gene010215.t1.exon5;Parent=MS.gene010215.t1 |
| chr5.1 | CDS | 48870543 | 48870839 | 48870543 | ID=cds.MS.gene010215.t1;Parent=MS.gene010215.t1 |
| Gene Sequence |
| Protein sequence |
