Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene55897.t1 | XP_013463074.1 | 95.2 | 313 | 15 | 0 | 1 | 313 | 1 | 313 | 2.10E-165 | 591.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene55897.t1 | Q94CK4 | 58.7 | 312 | 129 | 0 | 1 | 312 | 1 | 312 | 7.3e-103 | 375.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene55897.t1 | A0A072V514 | 95.2 | 313 | 15 | 0 | 1 | 313 | 1 | 313 | 1.5e-165 | 591.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene026445 | MS.gene55897 | PPI |
MS.gene55897 | MS.gene043964 | PPI |
MS.gene061777 | MS.gene55897 | PPI |
MS.gene047030 | MS.gene55897 | PPI |
MS.gene030809 | MS.gene55897 | PPI |
MS.gene056195 | MS.gene55897 | PPI |
MS.gene065031 | MS.gene55897 | PPI |
MS.gene040887 | MS.gene55897 | PPI |
MS.gene85401 | MS.gene55897 | PPI |
MS.gene55897 | MS.gene030809 | PPI |
MS.gene55897 | MS.gene047020 | PPI |
MS.gene016642 | MS.gene55897 | PPI |
MS.gene28077 | MS.gene55897 | PPI |
MS.gene55897 | MS.gene89484 | PPI |
MS.gene55897 | MS.gene040097 | PPI |
MS.gene55897 | MS.gene27444 | PPI |
MS.gene029299 | MS.gene55897 | PPI |
MS.gene55897 | MS.gene010215 | PPI |
MS.gene74945 | MS.gene55897 | PPI |
MS.gene93736 | MS.gene55897 | PPI |
MS.gene55897 | MS.gene035891 | PPI |
MS.gene57291 | MS.gene55897 | PPI |
MS.gene55897 | MS.gene87117 | PPI |
MS.gene55897 | MS.gene067369 | PPI |
MS.gene76197 | MS.gene55897 | PPI |
MS.gene55897 | MS.gene92405 | PPI |
MS.gene45772 | MS.gene55897 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene55897.t1 | MTR_2g031980 | 95.208 | 313 | 15 | 0 | 1 | 313 | 1 | 313 | 0.0 | 613 |
MS.gene55897.t1 | MTR_8g038220 | 49.201 | 313 | 158 | 1 | 1 | 313 | 1 | 312 | 4.07e-112 | 327 |
MS.gene55897.t1 | MTR_8g038220 | 48.243 | 313 | 162 | 0 | 1 | 313 | 1 | 313 | 4.49e-110 | 322 |
MS.gene55897.t1 | MTR_3g018780 | 47.267 | 311 | 164 | 0 | 1 | 311 | 1 | 311 | 2.21e-109 | 320 |
MS.gene55897.t1 | MTR_3g018790 | 47.604 | 313 | 164 | 0 | 1 | 313 | 1 | 313 | 4.76e-106 | 312 |
MS.gene55897.t1 | MTR_5g063670 | 46.006 | 313 | 168 | 1 | 1 | 312 | 1 | 313 | 3.40e-103 | 305 |
MS.gene55897.t1 | MTR_8g038180 | 46.945 | 311 | 165 | 0 | 1 | 311 | 1 | 311 | 9.17e-103 | 303 |
MS.gene55897.t1 | MTR_8g038210 | 45.367 | 313 | 170 | 1 | 1 | 313 | 1 | 312 | 3.99e-97 | 289 |
MS.gene55897.t1 | MTR_8g038210 | 44.089 | 313 | 174 | 1 | 1 | 313 | 1 | 312 | 1.28e-94 | 283 |
MS.gene55897.t1 | MTR_0276s0050 | 43.564 | 303 | 171 | 0 | 11 | 313 | 12 | 314 | 1.23e-88 | 268 |
MS.gene55897.t1 | MTR_3g018790 | 45.643 | 241 | 131 | 0 | 73 | 313 | 19 | 259 | 1.18e-73 | 228 |
MS.gene55897.t1 | MTR_8g038150 | 37.500 | 304 | 187 | 1 | 11 | 311 | 12 | 315 | 8.15e-67 | 212 |
MS.gene55897.t1 | MTR_6g071605 | 35.783 | 313 | 198 | 3 | 1 | 311 | 1 | 312 | 1.21e-65 | 209 |
MS.gene55897.t1 | MTR_8g107640 | 36.093 | 302 | 191 | 2 | 11 | 311 | 12 | 312 | 2.92e-65 | 208 |
MS.gene55897.t1 | MTR_6g071615 | 36.102 | 313 | 197 | 3 | 1 | 311 | 1 | 312 | 3.58e-63 | 202 |
MS.gene55897.t1 | MTR_1g033560 | 33.882 | 304 | 199 | 2 | 11 | 313 | 12 | 314 | 1.67e-60 | 196 |
MS.gene55897.t1 | MTR_1g112520 | 35.161 | 310 | 197 | 3 | 5 | 311 | 4 | 312 | 7.07e-60 | 194 |
MS.gene55897.t1 | MTR_8g038170 | 37.778 | 315 | 171 | 6 | 14 | 311 | 5 | 311 | 1.41e-58 | 191 |
MS.gene55897.t1 | MTR_8g038170 | 37.778 | 315 | 171 | 6 | 14 | 311 | 5 | 311 | 1.41e-58 | 191 |
MS.gene55897.t1 | MTR_3g018920 | 41.706 | 211 | 91 | 1 | 1 | 211 | 1 | 179 | 3.82e-56 | 180 |
MS.gene55897.t1 | MTR_6g071595 | 34.448 | 299 | 194 | 2 | 14 | 311 | 15 | 312 | 5.61e-56 | 184 |
MS.gene55897.t1 | MTR_6g071595 | 33.054 | 239 | 158 | 2 | 14 | 251 | 15 | 252 | 2.20e-41 | 145 |
MS.gene55897.t1 | MTR_6g028030 | 26.277 | 274 | 194 | 4 | 44 | 309 | 34 | 307 | 3.59e-26 | 105 |
MS.gene55897.t1 | MTR_3g018925 | 47.368 | 95 | 50 | 0 | 219 | 313 | 14 | 108 | 2.01e-21 | 87.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene55897.t1 | AT5G12380 | 58.654 | 312 | 129 | 0 | 1 | 312 | 1 | 312 | 2.93e-136 | 389 |
MS.gene55897.t1 | AT5G10230 | 47.020 | 302 | 160 | 0 | 12 | 313 | 13 | 314 | 1.91e-99 | 295 |
MS.gene55897.t1 | AT5G10220 | 46.835 | 316 | 165 | 2 | 1 | 313 | 1 | 316 | 7.94e-99 | 294 |
MS.gene55897.t1 | AT1G35720 | 44.737 | 304 | 167 | 1 | 11 | 313 | 12 | 315 | 1.43e-96 | 288 |
MS.gene55897.t1 | AT5G65020 | 42.675 | 314 | 178 | 2 | 1 | 312 | 1 | 314 | 1.11e-90 | 273 |
MS.gene55897.t1 | AT5G65020 | 43.253 | 289 | 163 | 1 | 25 | 312 | 11 | 299 | 7.35e-87 | 263 |
MS.gene55897.t1 | AT2G38760 | 41.100 | 309 | 176 | 2 | 11 | 313 | 12 | 320 | 9.09e-79 | 243 |
MS.gene55897.t1 | AT1G68090 | 32.781 | 302 | 202 | 1 | 11 | 311 | 12 | 313 | 1.30e-58 | 191 |
MS.gene55897.t1 | AT2G38750 | 35.065 | 308 | 175 | 6 | 21 | 310 | 15 | 315 | 2.45e-53 | 177 |
MS.gene55897.t1 | AT2G38750 | 35.197 | 304 | 172 | 6 | 25 | 310 | 2 | 298 | 4.07e-53 | 176 |
MS.gene55897.t1 | AT1G68090 | 32.218 | 239 | 161 | 1 | 11 | 248 | 12 | 250 | 1.61e-43 | 150 |
Find 44 sgRNAs with CRISPR-Local
Find 75 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGTGACTTTCAATATCTTTA+AGG | 0.055725 | 2.3:+58116199 | MS.gene55897:CDS |
AAGTCATCTTACCTTATTAA+TGG | 0.196321 | 2.3:-58116237 | None:intergenic |
TTCAATCAATTGATGAAGTA+TGG | 0.245555 | 2.3:-58116111 | None:intergenic |
TTACCTTGGCCAAGTATCTT+TGG | 0.262025 | 2.3:-58116463 | None:intergenic |
CAGCTCAAAACTGAACTTTC+AGG | 0.310428 | 2.3:+58115521 | MS.gene55897:CDS |
TTTCAATTGTAGGGATTATC+AGG | 0.320601 | 2.3:+58116380 | MS.gene55897:intron |
TAGAAATACTGAAGAGCTTC+TGG | 0.326830 | 2.3:+58115815 | MS.gene55897:CDS |
GTATGGCACAACCATTAATA+AGG | 0.354944 | 2.3:+58116226 | MS.gene55897:CDS |
TCAATAATCACTTTGTAATC+TGG | 0.360081 | 2.3:-58115780 | None:intergenic |
AATATCTTTAAGGACTTGTA+TGG | 0.373979 | 2.3:+58116209 | MS.gene55897:CDS |
GCTCCAATGTATTCATCAAT+TGG | 0.396159 | 2.3:-58116407 | None:intergenic |
ATTCATTTCCCAACAATTCA+AGG | 0.397289 | 2.3:-58116763 | None:intergenic |
TTCATTTGCCAGATCATTCA+AGG | 0.399618 | 2.3:-58116600 | None:intergenic |
ATAGTTTCAGCATCTTCAAT+TGG | 0.400976 | 2.3:-58115221 | None:intergenic |
GAGAGGCAACATCTTCTTCA+AGG | 0.414127 | 2.3:-58115875 | None:intergenic |
ATCCATTGTCCAATGACTAA+TGG | 0.425161 | 2.3:-58115706 | None:intergenic |
CAATGACAGCCAAAGATACT+TGG | 0.437410 | 2.3:+58116454 | MS.gene55897:CDS |
TTCATTTCGGTGTGCTAGTA+CGG | 0.451418 | 2.3:-58115438 | None:intergenic |
TTATCAAGAAATTTATCATC+AGG | 0.460775 | 2.3:+58115487 | MS.gene55897:CDS |
TGAACTTTCAGGAAACTTTG+AGG | 0.461813 | 2.3:+58115532 | MS.gene55897:CDS |
ATCTCACGCCTTGAATGATC+TGG | 0.465214 | 2.3:+58116592 | MS.gene55897:CDS |
TCAAAGAAAACTTGTGAGGC+TGG | 0.474305 | 2.3:+58115463 | MS.gene55897:CDS |
TCGTGCAGAGAAGGACTTGA+AGG | 0.481757 | 2.3:+58116652 | MS.gene55897:CDS |
ATCAGAGAGCCATTAGTCAT+TGG | 0.483585 | 2.3:+58115697 | MS.gene55897:intron |
AGTGTAGCATCTCTTTCAGC+TGG | 0.500813 | 2.3:-58115729 | None:intergenic |
TATTAATGAGGCACTAAAGA+AGG | 0.504365 | 2.3:+58115752 | MS.gene55897:CDS |
GGCAATGCTTGTAAAGAGAA+TGG | 0.512438 | 2.3:-58115854 | None:intergenic |
CCATTCATGATTCTGTTGCT+AGG | 0.535196 | 2.3:+58116711 | MS.gene55897:CDS |
GATGTTGCCTCTCAAACTAC+TGG | 0.536143 | 2.3:+58115885 | MS.gene55897:CDS |
ATTCTGTTGCTAGGAAGACA+TGG | 0.545887 | 2.3:+58116720 | MS.gene55897:CDS |
CCTAGCAACAGAATCATGAA+TGG | 0.562607 | 2.3:-58116711 | None:intergenic |
AGTCCAATTGATGAATACAT+TGG | 0.565821 | 2.3:+58116404 | MS.gene55897:CDS |
TATTGTCACTCGTGCAGAGA+AGG | 0.570093 | 2.3:+58116643 | MS.gene55897:CDS |
AGATGCTACACTTATTAATG+AGG | 0.597858 | 2.3:+58115740 | MS.gene55897:CDS |
TTCTGTTGCTAGGAAGACAT+GGG | 0.615900 | 2.3:+58116721 | MS.gene55897:CDS |
AATATCACCAGTAGTTTGAG+AGG | 0.620279 | 2.3:-58115892 | None:intergenic |
GCTGTCATTGATGCATCGAA+CGG | 0.621539 | 2.3:-58116441 | None:intergenic |
ACTATCAAGAATGCATGCAA+AGG | 0.624132 | 2.3:+58115239 | MS.gene55897:CDS |
CAGCCAAAGATACTTGGCCA+AGG | 0.646550 | 2.3:+58116460 | MS.gene55897:CDS |
AAGCTCAAAGAAAACTTGTG+AGG | 0.650998 | 2.3:+58115459 | MS.gene55897:CDS |
AGCCATTAGTCATTGGACAA+TGG | 0.653584 | 2.3:+58115704 | MS.gene55897:CDS |
AGATGAGTTTGATGAGAATG+TGG | 0.686942 | 2.3:+58116073 | MS.gene55897:CDS |
ATAAGCACTTACAAGTACGA+TGG | 0.694159 | 2.3:+58116050 | MS.gene55897:CDS |
TCTGTTGCTAGGAAGACATG+GGG | 0.714554 | 2.3:+58116722 | MS.gene55897:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAAATTATCAAATAGAGAA+TGG | - | chr2.3:58116515-58116534 | None:intergenic | 15.0% |
!! | ATATGTTTAGTAAAAACTAT+AGG | - | chr2.3:58116542-58116561 | None:intergenic | 15.0% |
!! | TATGTTTAGTAAAAACTATA+GGG | - | chr2.3:58116541-58116560 | None:intergenic | 15.0% |
!! | ATATTCATGTCTAATAACAA+AGG | + | chr2.3:58115325-58115344 | MS.gene55897:intron | 20.0% |
!! | TATTCATGTCTAATAACAAA+GGG | + | chr2.3:58115326-58115345 | MS.gene55897:intron | 20.0% |
!! | TATTTCATGCAATAAAATCA+AGG | + | chr2.3:58116332-58116351 | MS.gene55897:intron | 20.0% |
!! | TTATCAAGAAATTTATCATC+AGG | + | chr2.3:58115487-58115506 | MS.gene55897:CDS | 20.0% |
!!! | AATTTGTTGTTTTCAATTGT+AGG | + | chr2.3:58116370-58116389 | MS.gene55897:intron | 20.0% |
!!! | ATTTCCATGGTATAAATTTT+TGG | - | chr2.3:58115679-58115698 | None:intergenic | 20.0% |
!!! | ATTTGTTGTTTTCAATTGTA+GGG | + | chr2.3:58116371-58116390 | MS.gene55897:intron | 20.0% |
!!! | ATTTTTATCCTTGAATTGTT+GGG | + | chr2.3:58116755-58116774 | MS.gene55897:CDS | 20.0% |
!!! | TATGTATGTTAACTTGATTT+AGG | + | chr2.3:58116565-58116584 | MS.gene55897:intron | 20.0% |
! | AACCAAAGTCACAAAAATAT+TGG | + | chr2.3:58116484-58116503 | MS.gene55897:intron | 25.0% |
! | AAGTCATCTTACCTTATTAA+TGG | - | chr2.3:58116240-58116259 | None:intergenic | 25.0% |
! | ATTGCCAAAAATTTATACCA+TGG | + | chr2.3:58115672-58115691 | MS.gene55897:intron | 25.0% |
! | CAATAAAATCAAGGATATCA+TGG | + | chr2.3:58116341-58116360 | MS.gene55897:intron | 25.0% |
! | GTTTCAAAATCTATACTTTG+AGG | + | chr2.3:58115623-58115642 | MS.gene55897:intron | 25.0% |
! | TCAATAATCACTTTGTAATC+TGG | - | chr2.3:58115783-58115802 | None:intergenic | 25.0% |
! | TGTGACTTTCAATATCTTTA+AGG | + | chr2.3:58116199-58116218 | MS.gene55897:CDS | 25.0% |
! | TTCAATCAATTGATGAAGTA+TGG | - | chr2.3:58116114-58116133 | None:intergenic | 25.0% |
!! | AAGGGAATAAATTTTATTCG+AGG | + | chr2.3:58115344-58115363 | MS.gene55897:intron | 25.0% |
!! | AATATCTTTAAGGACTTGTA+TGG | + | chr2.3:58116209-58116228 | MS.gene55897:CDS | 25.0% |
!! | ATGTGATTTTTATCATGTAC+AGG | + | chr2.3:58115386-58115405 | MS.gene55897:intron | 25.0% |
!! | CATTGTTTCTCTTCAAAAAA+TGG | - | chr2.3:58116688-58116707 | None:intergenic | 25.0% |
!! | GATTTTTATCCTTGAATTGT+TGG | + | chr2.3:58116754-58116773 | MS.gene55897:CDS | 25.0% |
!! | TTTTTATCATGTACAGGATT+CGG | + | chr2.3:58115392-58115411 | MS.gene55897:intron | 25.0% |
!!! | AACAGTTTTGTTATGTTACA+TGG | + | chr2.3:58115960-58115979 | MS.gene55897:intron | 25.0% |
!!! | TTCTTTGAGAAATCTTTTGA+AGG | - | chr2.3:58116297-58116316 | None:intergenic | 25.0% |
AGATGCTACACTTATTAATG+AGG | + | chr2.3:58115740-58115759 | MS.gene55897:CDS | 30.0% | |
AGTCCAATTGATGAATACAT+TGG | + | chr2.3:58116404-58116423 | MS.gene55897:CDS | 30.0% | |
ATAGTTTCAGCATCTTCAAT+TGG | - | chr2.3:58115224-58115243 | None:intergenic | 30.0% | |
ATTCATTTCCCAACAATTCA+AGG | - | chr2.3:58116766-58116785 | None:intergenic | 30.0% | |
TTTCAATTGTAGGGATTATC+AGG | + | chr2.3:58116380-58116399 | MS.gene55897:intron | 30.0% | |
TTTGAACAAGTGCAACAAAA+TGG | + | chr2.3:58115990-58116009 | MS.gene55897:intron | 30.0% | |
! | AGCTTTTAACGATGATGAAA+TGG | + | chr2.3:58116139-58116158 | MS.gene55897:CDS | 30.0% |
! | GTTTTCTTTGAGCTTCATTT+CGG | - | chr2.3:58115454-58115473 | None:intergenic | 30.0% |
! | TATTAATGAGGCACTAAAGA+AGG | + | chr2.3:58115752-58115771 | MS.gene55897:CDS | 30.0% |
! | TTTTATCATGTACAGGATTC+GGG | + | chr2.3:58115393-58115412 | MS.gene55897:intron | 30.0% |
!! | CTCCAATATTTTTGTGACTT+TGG | - | chr2.3:58116489-58116508 | None:intergenic | 30.0% |
!!! | AATTTTATTCGAGGCATTGT+CGG | + | chr2.3:58115353-58115372 | MS.gene55897:intron | 30.0% |
AAGCTCAAAGAAAACTTGTG+AGG | + | chr2.3:58115459-58115478 | MS.gene55897:CDS | 35.0% | |
AATATCACCAGTAGTTTGAG+AGG | - | chr2.3:58115895-58115914 | None:intergenic | 35.0% | |
ACTATCAAGAATGCATGCAA+AGG | + | chr2.3:58115239-58115258 | MS.gene55897:CDS | 35.0% | |
AGATGAGTTTGATGAGAATG+TGG | + | chr2.3:58116073-58116092 | MS.gene55897:CDS | 35.0% | |
ATAAGCACTTACAAGTACGA+TGG | + | chr2.3:58116050-58116069 | MS.gene55897:CDS | 35.0% | |
ATCCATTGTCCAATGACTAA+TGG | - | chr2.3:58115709-58115728 | None:intergenic | 35.0% | |
GCTCCAATGTATTCATCAAT+TGG | - | chr2.3:58116410-58116429 | None:intergenic | 35.0% | |
GTATGGCACAACCATTAATA+AGG | + | chr2.3:58116226-58116245 | MS.gene55897:CDS | 35.0% | |
TAGAAATACTGAAGAGCTTC+TGG | + | chr2.3:58115815-58115834 | MS.gene55897:CDS | 35.0% | |
TGAACTTTCAGGAAACTTTG+AGG | + | chr2.3:58115532-58115551 | MS.gene55897:CDS | 35.0% | |
TTCATTTGCCAGATCATTCA+AGG | - | chr2.3:58116603-58116622 | None:intergenic | 35.0% | |
! | ACTATTTCTCATGCAGTTGT+TGG | + | chr2.3:58116019-58116038 | MS.gene55897:intron | 35.0% |
! | TTTTGTGACTTTGGTTACCT+TGG | - | chr2.3:58116480-58116499 | None:intergenic | 35.0% |
AGCCATTAGTCATTGGACAA+TGG | + | chr2.3:58115704-58115723 | MS.gene55897:CDS | 40.0% | |
ATCAGAGAGCCATTAGTCAT+TGG | + | chr2.3:58115697-58115716 | MS.gene55897:intron | 40.0% | |
ATTCTGTTGCTAGGAAGACA+TGG | + | chr2.3:58116720-58116739 | MS.gene55897:CDS | 40.0% | |
CAATGACAGCCAAAGATACT+TGG | + | chr2.3:58116454-58116473 | MS.gene55897:CDS | 40.0% | |
CAGCTCAAAACTGAACTTTC+AGG | + | chr2.3:58115521-58115540 | MS.gene55897:CDS | 40.0% | |
CCATTCATGATTCTGTTGCT+AGG | + | chr2.3:58116711-58116730 | MS.gene55897:CDS | 40.0% | |
CCTAGCAACAGAATCATGAA+TGG | - | chr2.3:58116714-58116733 | None:intergenic | 40.0% | |
GGCAATGCTTGTAAAGAGAA+TGG | - | chr2.3:58115857-58115876 | None:intergenic | 40.0% | |
TAATGGCTCTCTGATTTCCA+TGG | - | chr2.3:58115692-58115711 | None:intergenic | 40.0% | |
TCAAAGAAAACTTGTGAGGC+TGG | + | chr2.3:58115463-58115482 | MS.gene55897:CDS | 40.0% | |
TTACCTTGGCCAAGTATCTT+TGG | - | chr2.3:58116466-58116485 | None:intergenic | 40.0% | |
TTCTGTTGCTAGGAAGACAT+GGG | + | chr2.3:58116721-58116740 | MS.gene55897:CDS | 40.0% | |
! | TTCATTTCGGTGTGCTAGTA+CGG | - | chr2.3:58115441-58115460 | None:intergenic | 40.0% |
AGTGTAGCATCTCTTTCAGC+TGG | - | chr2.3:58115732-58115751 | None:intergenic | 45.0% | |
ATCTCACGCCTTGAATGATC+TGG | + | chr2.3:58116592-58116611 | MS.gene55897:CDS | 45.0% | |
GAGAGGCAACATCTTCTTCA+AGG | - | chr2.3:58115878-58115897 | None:intergenic | 45.0% | |
GATGTTGCCTCTCAAACTAC+TGG | + | chr2.3:58115885-58115904 | MS.gene55897:CDS | 45.0% | |
GCTGTCATTGATGCATCGAA+CGG | - | chr2.3:58116444-58116463 | None:intergenic | 45.0% | |
TATTGTCACTCGTGCAGAGA+AGG | + | chr2.3:58116643-58116662 | MS.gene55897:CDS | 45.0% | |
TCTGTTGCTAGGAAGACATG+GGG | + | chr2.3:58116722-58116741 | MS.gene55897:CDS | 45.0% | |
CAGCCAAAGATACTTGGCCA+AGG | + | chr2.3:58116460-58116479 | MS.gene55897:CDS | 50.0% | |
TCGTGCAGAGAAGGACTTGA+AGG | + | chr2.3:58116652-58116671 | MS.gene55897:CDS | 50.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.3 | gene | 58115188 | 58116787 | 58115188 | ID=MS.gene55897 |
chr2.3 | mRNA | 58115188 | 58116787 | 58115188 | ID=MS.gene55897.t1;Parent=MS.gene55897 |
chr2.3 | exon | 58115188 | 58115260 | 58115188 | ID=MS.gene55897.t1.exon1;Parent=MS.gene55897.t1 |
chr2.3 | CDS | 58115188 | 58115260 | 58115188 | ID=cds.MS.gene55897.t1;Parent=MS.gene55897.t1 |
chr2.3 | exon | 58115408 | 58115553 | 58115408 | ID=MS.gene55897.t1.exon2;Parent=MS.gene55897.t1 |
chr2.3 | CDS | 58115408 | 58115553 | 58115408 | ID=cds.MS.gene55897.t1;Parent=MS.gene55897.t1 |
chr2.3 | exon | 58115702 | 58115920 | 58115702 | ID=MS.gene55897.t1.exon3;Parent=MS.gene55897.t1 |
chr2.3 | CDS | 58115702 | 58115920 | 58115702 | ID=cds.MS.gene55897.t1;Parent=MS.gene55897.t1 |
chr2.3 | exon | 58116035 | 58116247 | 58116035 | ID=MS.gene55897.t1.exon4;Parent=MS.gene55897.t1 |
chr2.3 | CDS | 58116035 | 58116247 | 58116035 | ID=cds.MS.gene55897.t1;Parent=MS.gene55897.t1 |
chr2.3 | exon | 58116392 | 58116481 | 58116392 | ID=MS.gene55897.t1.exon5;Parent=MS.gene55897.t1 |
chr2.3 | CDS | 58116392 | 58116481 | 58116392 | ID=cds.MS.gene55897.t1;Parent=MS.gene55897.t1 |
chr2.3 | exon | 58116587 | 58116787 | 58116587 | ID=MS.gene55897.t1.exon6;Parent=MS.gene55897.t1 |
chr2.3 | CDS | 58116587 | 58116787 | 58116587 | ID=cds.MS.gene55897.t1;Parent=MS.gene55897.t1 |
Gene Sequence |
Protein sequence |