Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene035891.t1 | XP_003615096.1 | 98.7 | 316 | 4 | 0 | 1 | 316 | 1 | 316 | 6.00E-173 | 616.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene035891.t1 | Q9SYT0 | 70.3 | 317 | 93 | 1 | 1 | 316 | 1 | 317 | 8.9e-125 | 448.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene035891.t1 | G7KB73 | 98.7 | 316 | 4 | 0 | 1 | 316 | 1 | 316 | 4.3e-173 | 616.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene035891 | MS.gene67887 | PPI |
| MS.gene029299 | MS.gene035891 | PPI |
| MS.gene00058 | MS.gene035891 | PPI |
| MS.gene74945 | MS.gene035891 | PPI |
| MS.gene041553 | MS.gene035891 | PPI |
| MS.gene047020 | MS.gene035891 | PPI |
| MS.gene035891 | MS.gene067369 | PPI |
| MS.gene035891 | MS.gene92405 | PPI |
| MS.gene93736 | MS.gene035891 | PPI |
| MS.gene058336 | MS.gene035891 | PPI |
| MS.gene036493 | MS.gene035891 | PPI |
| MS.gene57291 | MS.gene035891 | PPI |
| MS.gene76197 | MS.gene035891 | PPI |
| MS.gene45772 | MS.gene035891 | PPI |
| MS.gene026445 | MS.gene035891 | PPI |
| MS.gene061777 | MS.gene035891 | PPI |
| MS.gene047030 | MS.gene035891 | PPI |
| MS.gene035891 | MS.gene87117 | PPI |
| MS.gene030809 | MS.gene035891 | PPI |
| MS.gene056195 | MS.gene035891 | PPI |
| MS.gene065031 | MS.gene035891 | PPI |
| MS.gene040887 | MS.gene035891 | PPI |
| MS.gene85401 | MS.gene035891 | PPI |
| MS.gene55897 | MS.gene035891 | PPI |
| MS.gene016642 | MS.gene035891 | PPI |
| MS.gene035891 | MS.gene040097 | PPI |
| MS.gene035891 | MS.gene27444 | PPI |
| MS.gene035327 | MS.gene035891 | PPI |
| MS.gene28077 | MS.gene035891 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene035891.t1 | MTR_5g063670 | 98.734 | 316 | 4 | 0 | 1 | 316 | 1 | 316 | 0.0 | 639 |
| MS.gene035891.t1 | MTR_0276s0050 | 66.984 | 315 | 104 | 0 | 1 | 315 | 1 | 315 | 5.14e-151 | 426 |
| MS.gene035891.t1 | MTR_8g038220 | 48.254 | 315 | 162 | 1 | 1 | 315 | 1 | 314 | 1.03e-99 | 296 |
| MS.gene035891.t1 | MTR_3g018780 | 46.667 | 315 | 167 | 1 | 1 | 315 | 1 | 314 | 2.39e-99 | 295 |
| MS.gene035891.t1 | MTR_2g031980 | 45.223 | 314 | 171 | 1 | 1 | 314 | 1 | 313 | 2.63e-99 | 295 |
| MS.gene035891.t1 | MTR_8g038220 | 47.937 | 315 | 162 | 1 | 1 | 315 | 1 | 313 | 6.43e-99 | 294 |
| MS.gene035891.t1 | MTR_8g038210 | 47.302 | 315 | 164 | 2 | 1 | 315 | 1 | 313 | 1.43e-97 | 290 |
| MS.gene035891.t1 | MTR_3g018790 | 46.349 | 315 | 168 | 1 | 1 | 315 | 1 | 314 | 4.21e-97 | 289 |
| MS.gene035891.t1 | MTR_8g038210 | 46.349 | 315 | 167 | 2 | 1 | 315 | 1 | 313 | 7.93e-94 | 281 |
| MS.gene035891.t1 | MTR_8g038180 | 46.795 | 312 | 165 | 1 | 1 | 312 | 1 | 311 | 1.69e-92 | 278 |
| MS.gene035891.t1 | MTR_8g038150 | 43.175 | 315 | 176 | 1 | 1 | 312 | 1 | 315 | 4.41e-82 | 251 |
| MS.gene035891.t1 | MTR_8g107640 | 37.778 | 315 | 190 | 6 | 1 | 312 | 1 | 312 | 8.73e-69 | 217 |
| MS.gene035891.t1 | MTR_3g018790 | 44.215 | 242 | 135 | 0 | 74 | 315 | 19 | 260 | 3.57e-68 | 214 |
| MS.gene035891.t1 | MTR_1g033560 | 35.873 | 315 | 200 | 2 | 1 | 314 | 1 | 314 | 3.83e-65 | 207 |
| MS.gene035891.t1 | MTR_6g071605 | 35.938 | 320 | 195 | 5 | 1 | 315 | 1 | 315 | 5.85e-64 | 204 |
| MS.gene035891.t1 | MTR_6g071615 | 37.500 | 320 | 190 | 5 | 1 | 315 | 1 | 315 | 1.19e-63 | 204 |
| MS.gene035891.t1 | MTR_8g038170 | 38.608 | 316 | 169 | 5 | 14 | 312 | 4 | 311 | 5.30e-62 | 199 |
| MS.gene035891.t1 | MTR_8g038170 | 38.608 | 316 | 169 | 5 | 14 | 312 | 4 | 311 | 5.30e-62 | 199 |
| MS.gene035891.t1 | MTR_1g112520 | 36.278 | 317 | 192 | 5 | 1 | 312 | 1 | 312 | 2.98e-61 | 197 |
| MS.gene035891.t1 | MTR_6g071595 | 35.099 | 302 | 188 | 3 | 15 | 312 | 15 | 312 | 2.23e-55 | 182 |
| MS.gene035891.t1 | MTR_3g018920 | 44.340 | 212 | 85 | 2 | 1 | 212 | 1 | 179 | 2.70e-52 | 170 |
| MS.gene035891.t1 | MTR_6g071595 | 34.167 | 240 | 150 | 3 | 15 | 250 | 15 | 250 | 1.49e-39 | 140 |
| MS.gene035891.t1 | MTR_6g028030 | 28.000 | 275 | 190 | 4 | 44 | 310 | 33 | 307 | 1.56e-28 | 112 |
| MS.gene035891.t1 | MTR_3g018925 | 38.542 | 96 | 59 | 0 | 220 | 315 | 14 | 109 | 3.54e-18 | 79.0 |
| MS.gene035891.t1 | MTR_8g038090 | 39.080 | 87 | 51 | 2 | 228 | 312 | 4 | 90 | 6.06e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene035891.t1 | AT1G35720 | 70.347 | 317 | 93 | 1 | 1 | 316 | 1 | 317 | 7.84e-165 | 461 |
| MS.gene035891.t1 | AT5G10230 | 65.190 | 316 | 110 | 0 | 1 | 316 | 1 | 316 | 1.58e-153 | 432 |
| MS.gene035891.t1 | AT5G65020 | 64.669 | 317 | 111 | 1 | 1 | 316 | 1 | 317 | 1.97e-153 | 432 |
| MS.gene035891.t1 | AT5G10220 | 63.522 | 318 | 114 | 1 | 1 | 316 | 1 | 318 | 6.09e-150 | 424 |
| MS.gene035891.t1 | AT5G65020 | 65.188 | 293 | 101 | 1 | 25 | 316 | 10 | 302 | 1.20e-142 | 404 |
| MS.gene035891.t1 | AT5G12380 | 50.479 | 313 | 154 | 1 | 1 | 313 | 1 | 312 | 1.25e-111 | 326 |
| MS.gene035891.t1 | AT2G38760 | 40.252 | 318 | 184 | 2 | 1 | 312 | 1 | 318 | 8.77e-76 | 235 |
| MS.gene035891.t1 | AT1G68090 | 33.546 | 313 | 207 | 1 | 1 | 312 | 1 | 313 | 4.34e-62 | 200 |
| MS.gene035891.t1 | AT2G38750 | 35.938 | 320 | 179 | 7 | 16 | 315 | 6 | 319 | 2.21e-49 | 167 |
| MS.gene035891.t1 | AT2G38750 | 36.156 | 307 | 173 | 6 | 26 | 315 | 2 | 302 | 6.05e-49 | 166 |
| MS.gene035891.t1 | AT1G68090 | 31.200 | 250 | 171 | 1 | 1 | 249 | 1 | 250 | 1.97e-43 | 150 |
Find 61 sgRNAs with CRISPR-Local
Find 133 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCAGAGGCTGGTTCATCTT+TGG | 0.249553 | 5.2:-53317395 | MS.gene035891:intron |
| AAAGACAGGTACTCATCTTT+TGG | 0.286380 | 5.2:+53316647 | None:intergenic |
| AGGATTGATTATATCGATCT+TGG | 0.359661 | 5.2:-53318106 | MS.gene035891:CDS |
| AAGAACTAACCAGAGGTAAT+AGG | 0.379410 | 5.2:+53316960 | None:intergenic |
| TGACTACGAGAAAATGCTTT+TGG | 0.381008 | 5.2:-53316414 | MS.gene035891:CDS |
| GACATCGAGCAATCAGGTTC+TGG | 0.389191 | 5.2:-53317316 | MS.gene035891:CDS |
| ACTGGTAAGCTCTTTGTTCA+AGG | 0.435992 | 5.2:+53318008 | None:intergenic |
| TGTCTAGCTCCTATTACCTC+TGG | 0.443776 | 5.2:-53316969 | MS.gene035891:intron |
| GGATTGATTATATCGATCTT+GGG | 0.459351 | 5.2:-53318105 | MS.gene035891:CDS |
| TGTTCAACGTCATCGGAGAC+AGG | 0.468046 | 5.2:+53318651 | None:intergenic |
| AATCACTACAAGGATGCATT+CGG | 0.471381 | 5.2:-53316788 | MS.gene035891:CDS |
| GTAGGTTGGGGAACGAATGA+AGG | 0.472081 | 5.2:-53318126 | MS.gene035891:intron |
| AATTACCTGAAAATGCTTTG+CGG | 0.473154 | 5.2:+53318625 | None:intergenic |
| GGTTAGTTCTTACCGCTATG+AGG | 0.483743 | 5.2:-53316948 | MS.gene035891:CDS |
| AAGATCGACTGTTAAGTGCT+TGG | 0.487616 | 5.2:-53316621 | MS.gene035891:CDS |
| CTGATGAAGGAGCTCTTACA+AGG | 0.491225 | 5.2:-53316541 | MS.gene035891:CDS |
| ATAACGACGACGATTTCATC+AGG | 0.493456 | 5.2:-53316853 | MS.gene035891:CDS |
| GATGTTGCTTACCACACAAC+GGG | 0.503228 | 5.2:-53317207 | MS.gene035891:CDS |
| TTATGAAGAAGATCTCATAA+AGG | 0.507106 | 5.2:-53318031 | MS.gene035891:CDS |
| GAACAGTATCCCTCTTGATC+GGG | 0.508421 | 5.2:-53316459 | MS.gene035891:CDS |
| GCGGAGCTGTTCAACGTCAT+CGG | 0.510390 | 5.2:+53318644 | None:intergenic |
| TTATATCGATCTTGGGTCAT+CGG | 0.522845 | 5.2:-53318098 | MS.gene035891:CDS |
| GGAACAGTATCCCTCTTGAT+CGG | 0.527186 | 5.2:-53316460 | MS.gene035891:CDS |
| ATCTTCGCAAAGTACCTCTC+GGG | 0.530069 | 5.2:+53316593 | None:intergenic |
| GCACGAGAAGATTACAAAGA+AGG | 0.543469 | 5.2:-53316879 | MS.gene035891:CDS |
| AACAAGCGAGGAACTGATGA+AGG | 0.545290 | 5.2:-53316554 | MS.gene035891:CDS |
| TATCTTCGCAAAGTACCTCT+CGG | 0.551321 | 5.2:+53316592 | None:intergenic |
| GAGATGGACATCGAGCAATC+AGG | 0.556392 | 5.2:-53317322 | MS.gene035891:CDS |
| GCTGGTTCATCTTTGGACAC+TGG | 0.557023 | 5.2:-53317388 | MS.gene035891:CDS |
| GCCATTGTCAAGGACACCAC+TGG | 0.558447 | 5.2:-53316437 | MS.gene035891:CDS |
| CAGTCGATCTTAGTAAAGAC+AGG | 0.559788 | 5.2:+53316633 | None:intergenic |
| GTTAGTTCTTACCGCTATGA+GGG | 0.559871 | 5.2:-53316947 | MS.gene035891:CDS |
| TTCAACGTCATCGGAGACAG+GGG | 0.564720 | 5.2:+53318653 | None:intergenic |
| TGCTACTTTGAATCACTACA+AGG | 0.568307 | 5.2:-53316798 | MS.gene035891:CDS |
| TGATTTGAAAATTATAGCTG+AGG | 0.571271 | 5.2:-53316495 | MS.gene035891:CDS |
| TTAACTGACCTCAAAATCAC+TGG | 0.572067 | 5.2:+53317990 | None:intergenic |
| GTTCAACGTCATCGGAGACA+GGG | 0.574809 | 5.2:+53318652 | None:intergenic |
| ATCGAGCAATCAGGTTCTGG+TGG | 0.577409 | 5.2:-53317313 | MS.gene035891:CDS |
| ACCAGTGGTGTCCTTGACAA+TGG | 0.583293 | 5.2:+53316436 | None:intergenic |
| GTCATCGGAATGAGGTTCAA+AGG | 0.585027 | 5.2:-53318083 | MS.gene035891:CDS |
| TCTTGATCGGGCCATTGTCA+AGG | 0.589712 | 5.2:-53316447 | MS.gene035891:CDS |
| TTGACAATGGCCCGATCAAG+AGG | 0.597730 | 5.2:+53316449 | None:intergenic |
| TTATAGCTGAGGAGTATCAA+AGG | 0.599060 | 5.2:-53316484 | MS.gene035891:CDS |
| AGGAGCTCTTACAAGGGTGG+TGG | 0.601483 | 5.2:-53316534 | MS.gene035891:CDS |
| CAAACGAAGCAACTAAGAGA+TGG | 0.602476 | 5.2:-53317338 | MS.gene035891:CDS |
| GATCTTGGGTCATCGGAATG+AGG | 0.611347 | 5.2:-53318091 | MS.gene035891:CDS |
| TCGGAATGAGGTTCAAAGGA+AGG | 0.612348 | 5.2:-53318079 | MS.gene035891:CDS |
| TACGGAAGTCTCCCGTTGTG+TGG | 0.624082 | 5.2:+53317196 | None:intergenic |
| TGACAATGGCCCGATCAAGA+GGG | 0.665692 | 5.2:+53316450 | None:intergenic |
| TGAAGGAGCTCTTACAAGGG+TGG | 0.668685 | 5.2:-53316537 | MS.gene035891:CDS |
| TGATGAAGGAGCTCTTACAA+GGG | 0.669212 | 5.2:-53316540 | MS.gene035891:CDS |
| CTTTGCGAAGATAATTCGTG+AGG | 0.670853 | 5.2:-53316582 | MS.gene035891:CDS |
| CGTGAGGCTATCAACAAGCG+AGG | 0.677690 | 5.2:-53316566 | MS.gene035891:CDS |
| TCAACGTCATCGGAGACAGG+GGG | 0.683510 | 5.2:+53318654 | None:intergenic |
| CTTGACTATAGCAAAAGCCG+AGG | 0.685041 | 5.2:-53316912 | MS.gene035891:CDS |
| AGATGTTGCTTACCACACAA+CGG | 0.692993 | 5.2:-53317208 | MS.gene035891:CDS |
| CACAACGGGAGACTTCCGTA+AGG | 0.704750 | 5.2:-53317193 | MS.gene035891:intron |
| ATTCGGAAAAGATATAAACA+AGG | 0.714446 | 5.2:-53316771 | MS.gene035891:intron |
| TAGCTGAGGAGTATCAAAGG+AGG | 0.718780 | 5.2:-53316481 | MS.gene035891:CDS |
| TAGCGGTAAGAACTAACCAG+AGG | 0.724057 | 5.2:+53316953 | None:intergenic |
| TGACTTCATCTCCCTCATAG+CGG | 0.737910 | 5.2:+53316936 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATCTAAAATCCAAATTAA+AGG | + | chr5.2:53317116-53317135 | None:intergenic | 15.0% |
| !!! | ATAATATGTGTATCATTTTT+TGG | - | chr5.2:53317617-53317636 | MS.gene035891:intron | 15.0% |
| !! | AAACTAAGTTACATATTACA+TGG | + | chr5.2:53316485-53316504 | None:intergenic | 20.0% |
| !! | TAAAATCCAAATTAAAGGTT+TGG | + | chr5.2:53317111-53317130 | None:intergenic | 20.0% |
| !! | TTTGTAAGTTATTTGATTGA+TGG | - | chr5.2:53316532-53316551 | MS.gene035891:CDS | 20.0% |
| !!! | AAAACTGTTTTCATATAAGA+TGG | - | chr5.2:53317222-53317241 | MS.gene035891:CDS | 20.0% |
| !!! | AAAAGATGTTATGTTGATTA+AGG | - | chr5.2:53317531-53317550 | MS.gene035891:intron | 20.0% |
| !!! | AAAGATGTTATGTTGATTAA+GGG | - | chr5.2:53317532-53317551 | MS.gene035891:intron | 20.0% |
| !!! | ATTAAGTTGTTTATCCAAAA+AGG | + | chr5.2:53317164-53317183 | None:intergenic | 20.0% |
| !!! | ATTTGGATTTTAGATTTGAA+TGG | - | chr5.2:53317119-53317138 | MS.gene035891:intron | 20.0% |
| !!! | TAATCAACATAACATCTTTT+TGG | + | chr5.2:53317531-53317550 | None:intergenic | 20.0% |
| ! | ACACATATTATTCTTGTTAC+AGG | + | chr5.2:53317608-53317627 | None:intergenic | 25.0% |
| ! | ATTCGGAAAAGATATAAACA+AGG | - | chr5.2:53318301-53318320 | MS.gene035891:intron | 25.0% |
| ! | TCAAATGAACAAATCTAAAC+AGG | - | chr5.2:53317359-53317378 | MS.gene035891:CDS | 25.0% |
| ! | TGATTTGAAAATTATAGCTG+AGG | - | chr5.2:53318577-53318596 | MS.gene035891:intron | 25.0% |
| ! | TTATGAAGAAGATCTCATAA+AGG | - | chr5.2:53317041-53317060 | MS.gene035891:intron | 25.0% |
| ! | TTGATATATGATTGTGTTGT+AGG | - | chr5.2:53316928-53316947 | MS.gene035891:CDS | 25.0% |
| ! | TTTGTATTTAGACTAAATGC+AGG | - | chr5.2:53317995-53318014 | MS.gene035891:intron | 25.0% |
| !! | AAAATGCTTTTGGCAATTTT+AGG | - | chr5.2:53318668-53318687 | MS.gene035891:CDS | 25.0% |
| !! | AAGATGTTATGTTGATTAAG+GGG | - | chr5.2:53317533-53317552 | MS.gene035891:intron | 25.0% |
| !!! | GTACTGTGTTTTTTGTATTT+AGG | - | chr5.2:53316842-53316861 | MS.gene035891:CDS | 25.0% |
| AATAAGCTGAAAACAGCTTA+TGG | - | chr5.2:53317275-53317294 | MS.gene035891:CDS | 30.0% | |
| AATCAATCAGTAGTACCTTA+CGG | + | chr5.2:53317897-53317916 | None:intergenic | 30.0% | |
| AATTACCTGAAAATGCTTTG+CGG | + | chr5.2:53316450-53316469 | None:intergenic | 30.0% | |
| AATTATGGAATCTCACTCAA+TGG | - | chr5.2:53317387-53317406 | MS.gene035891:CDS | 30.0% | |
| AGGATTGATTATATCGATCT+TGG | - | chr5.2:53316966-53316985 | MS.gene035891:intron | 30.0% | |
| ATATGATTGTGTTGTAGGTT+GGG | - | chr5.2:53316933-53316952 | MS.gene035891:CDS | 30.0% | |
| CTATTACGTATATCTGATCT+TGG | - | chr5.2:53317967-53317986 | MS.gene035891:intron | 30.0% | |
| GGATTGATTATATCGATCTT+GGG | - | chr5.2:53316967-53316986 | MS.gene035891:intron | 30.0% | |
| TATATGATTGTGTTGTAGGT+TGG | - | chr5.2:53316932-53316951 | MS.gene035891:CDS | 30.0% | |
| TTCAGAGTTTAACATGTTTC+TGG | - | chr5.2:53316894-53316913 | MS.gene035891:CDS | 30.0% | |
| ! | AGATGTTATGTTGATTAAGG+GGG | - | chr5.2:53317534-53317553 | MS.gene035891:intron | 30.0% |
| ! | TTGAATTTTCTCTTCATCAG+AGG | - | chr5.2:53317662-53317681 | MS.gene035891:intron | 30.0% |
| ! | TTTTAGACTTGGATCCTTTT+TGG | - | chr5.2:53317147-53317166 | MS.gene035891:intron | 30.0% |
| !! | AATTTTTGAGCCAATGTTGT+AGG | - | chr5.2:53318388-53318407 | MS.gene035891:intron | 30.0% |
| !! | ATTTGTGACACTTTGAGTTT+TGG | - | chr5.2:53317458-53317477 | MS.gene035891:intron | 30.0% |
| !! | TTCATAGATCAGTTTTGACA+TGG | + | chr5.2:53316754-53316773 | None:intergenic | 30.0% |
| !!! | GTTTTTTGTATTTAGGCTTG+TGG | - | chr5.2:53316849-53316868 | MS.gene035891:CDS | 30.0% |
| !!! | TCAACTGTTTTTTGCAAAGA+AGG | - | chr5.2:53317807-53317826 | MS.gene035891:intron | 30.0% |
| AAGAACTAACCAGAGGTAAT+AGG | + | chr5.2:53318115-53318134 | None:intergenic | 35.0% | |
| AAGTATATACAGGTACATCC+TGG | + | chr5.2:53317419-53317438 | None:intergenic | 35.0% | |
| AATCACTACAAGGATGCATT+CGG | - | chr5.2:53318284-53318303 | MS.gene035891:intron | 35.0% | |
| CTGAGTAAAACCTGACTTTA+GGG | - | chr5.2:53317505-53317524 | MS.gene035891:intron | 35.0% | |
| GATGGTTTCTTAAGTTATCC+TGG | - | chr5.2:53317240-53317259 | MS.gene035891:CDS | 35.0% | |
| GTTGTCAATACCAAACAGTT+CGG | + | chr5.2:53317570-53317589 | None:intergenic | 35.0% | |
| TAAGGGCCAAACCTTTAATT+TGG | - | chr5.2:53317102-53317121 | MS.gene035891:intron | 35.0% | |
| TATGATTGTGTTGTAGGTTG+GGG | - | chr5.2:53316934-53316953 | MS.gene035891:CDS | 35.0% | |
| TCTAAACAGGCTTCGAATTA+TGG | - | chr5.2:53317372-53317391 | MS.gene035891:CDS | 35.0% | |
| TCTGAGTAAAACCTGACTTT+AGG | - | chr5.2:53317504-53317523 | MS.gene035891:intron | 35.0% | |
| TCTTTCAGATCCTACAACAT+TGG | + | chr5.2:53318401-53318420 | None:intergenic | 35.0% | |
| TTAACTGACCTCAAAATCAC+TGG | + | chr5.2:53317085-53317104 | None:intergenic | 35.0% | |
| TTATATCGATCTTGGGTCAT+CGG | - | chr5.2:53316974-53316993 | MS.gene035891:intron | 35.0% | |
| ! | AAAGACAGGTACTCATCTTT+TGG | + | chr5.2:53318428-53318447 | None:intergenic | 35.0% |
| ! | AGTCAGGTTTTACTCAGAAT+TGG | + | chr5.2:53317502-53317521 | None:intergenic | 35.0% |
| ! | GATGTTATGTTGATTAAGGG+GGG | - | chr5.2:53317535-53317554 | MS.gene035891:intron | 35.0% |
| ! | GTCAGGTTTTACTCAGAATT+GGG | + | chr5.2:53317501-53317520 | None:intergenic | 35.0% |
| ! | TGACTACGAGAAAATGCTTT+TGG | - | chr5.2:53318658-53318677 | MS.gene035891:CDS | 35.0% |
| !! | TGCTACTTTGAATCACTACA+AGG | - | chr5.2:53318274-53318293 | MS.gene035891:intron | 35.0% |
| !! | TTATAGCTGAGGAGTATCAA+AGG | - | chr5.2:53318588-53318607 | MS.gene035891:intron | 35.0% |
| !!! | AGTGATTTTGAGGTCAGTTA+AGG | - | chr5.2:53317084-53317103 | MS.gene035891:intron | 35.0% |
| !!! | GAATGGATTGCTTTTAGACT+TGG | - | chr5.2:53317136-53317155 | MS.gene035891:intron | 35.0% |
| !!! | GTGATTTTGAGGTCAGTTAA+GGG | - | chr5.2:53317085-53317104 | MS.gene035891:intron | 35.0% |
| !!! | TCATCAGGATTTTAGCTACA+AGG | - | chr5.2:53318234-53318253 | MS.gene035891:intron | 35.0% |
| AAGATCGACTGTTAAGTGCT+TGG | - | chr5.2:53318451-53318470 | MS.gene035891:intron | 40.0% | |
| AAGTTATCCTGGAGAGCTTA+TGG | - | chr5.2:53317251-53317270 | MS.gene035891:CDS | 40.0% | |
| ACTGGTAAGCTCTTTGTTCA+AGG | + | chr5.2:53317067-53317086 | None:intergenic | 40.0% | |
| ATAACGACGACGATTTCATC+AGG | - | chr5.2:53318219-53318238 | MS.gene035891:intron | 40.0% | |
| CAAAAATGCATCACGTTCAG+CGG | + | chr5.2:53317713-53317732 | None:intergenic | 40.0% | |
| CAAACGAAGCAACTAAGAGA+TGG | - | chr5.2:53317734-53317753 | MS.gene035891:intron | 40.0% | |
| CAGTCGATCTTAGTAAAGAC+AGG | + | chr5.2:53318442-53318461 | None:intergenic | 40.0% | |
| CTTATTTCCATAAGCTCTCC+AGG | + | chr5.2:53317261-53317280 | None:intergenic | 40.0% | |
| CTTTGCGAAGATAATTCGTG+AGG | - | chr5.2:53318490-53318509 | MS.gene035891:intron | 40.0% | |
| GCACGAGAAGATTACAAAGA+AGG | - | chr5.2:53318193-53318212 | MS.gene035891:intron | 40.0% | |
| GCGCTCATCTAAGTATATAC+AGG | + | chr5.2:53317429-53317448 | None:intergenic | 40.0% | |
| TGATGAAGGAGCTCTTACAA+GGG | - | chr5.2:53318532-53318551 | MS.gene035891:intron | 40.0% | |
| ! | AGAGCTTACCAGTGATTTTG+AGG | - | chr5.2:53317074-53317093 | MS.gene035891:intron | 40.0% |
| ! | AGATGTTGCTTACCACACAA+CGG | - | chr5.2:53317864-53317883 | MS.gene035891:intron | 40.0% |
| ! | ATTTTCTCTTCATCAGAGGC+TGG | - | chr5.2:53317666-53317685 | MS.gene035891:intron | 40.0% |
| ! | GTTAGTTCTTACCGCTATGA+GGG | - | chr5.2:53318125-53318144 | MS.gene035891:CDS | 40.0% |
| ! | TATCTTCGCAAAGTACCTCT+CGG | + | chr5.2:53318483-53318502 | None:intergenic | 40.0% |
| !! | ATCTTTTTGGCCCTAAAGTC+AGG | + | chr5.2:53317518-53317537 | None:intergenic | 40.0% |
| AACAAGCGAGGAACTGATGA+AGG | - | chr5.2:53318518-53318537 | MS.gene035891:intron | 45.0% | |
| CTGATGAAGGAGCTCTTACA+AGG | - | chr5.2:53318531-53318550 | MS.gene035891:intron | 45.0% | |
| CTTGACTATAGCAAAAGCCG+AGG | - | chr5.2:53318160-53318179 | MS.gene035891:intron | 45.0% | |
| GAACAGTATCCCTCTTGATC+GGG | - | chr5.2:53318613-53318632 | MS.gene035891:intron | 45.0% | |
| GGAACAGTATCCCTCTTGAT+CGG | - | chr5.2:53318612-53318631 | MS.gene035891:intron | 45.0% | |
| GTCATCGGAATGAGGTTCAA+AGG | - | chr5.2:53316989-53317008 | MS.gene035891:intron | 45.0% | |
| GTTACTGATCTCGAGGCTAT+CGG | + | chr5.2:53316686-53316705 | None:intergenic | 45.0% | |
| TAGCGGTAAGAACTAACCAG+AGG | + | chr5.2:53318122-53318141 | None:intergenic | 45.0% | |
| TCCTTCACGCAGTTACTACA+GGG | - | chr5.2:53316710-53316729 | MS.gene035891:intron | 45.0% | |
| TCGGAATGAGGTTCAAAGGA+AGG | - | chr5.2:53316993-53317012 | MS.gene035891:intron | 45.0% | |
| TGACTTCATCTCCCTCATAG+CGG | + | chr5.2:53318139-53318158 | None:intergenic | 45.0% | |
| ! | ATCAGAGGCTGGTTCATCTT+TGG | - | chr5.2:53317677-53317696 | MS.gene035891:intron | 45.0% |
| ! | ATCTTCGCAAAGTACCTCTC+GGG | + | chr5.2:53318482-53318501 | None:intergenic | 45.0% |
| ! | CATTTTCTCGTAGTCACCAG+TGG | + | chr5.2:53318654-53318673 | None:intergenic | 45.0% |
| ! | CGCTGAACGTGATGCATTTT+TGG | - | chr5.2:53317711-53317730 | MS.gene035891:intron | 45.0% |
| ! | GATGTTGCTTACCACACAAC+GGG | - | chr5.2:53317865-53317884 | MS.gene035891:intron | 45.0% |
| ! | GGTTAGTTCTTACCGCTATG+AGG | - | chr5.2:53318124-53318143 | MS.gene035891:CDS | 45.0% |
| ! | TGTCTAGCTCCTATTACCTC+TGG | - | chr5.2:53318103-53318122 | MS.gene035891:CDS | 45.0% |
| !! | CTCGTGCAGTATTTTTGCCT+CGG | + | chr5.2:53318180-53318199 | None:intergenic | 45.0% |
| !! | TAGCTGAGGAGTATCAAAGG+AGG | - | chr5.2:53318591-53318610 | MS.gene035891:intron | 45.0% |
| !!! | ATTAAAAATTAGTTTATTTT+TGG | - | chr5.2:53318079-53318098 | MS.gene035891:CDS | 5.0% |
| ACCAGTGGTGTCCTTGACAA+TGG | + | chr5.2:53318639-53318658 | None:intergenic | 50.0% | |
| CTCACTCAATGGTAGACTCC+AGG | - | chr5.2:53317398-53317417 | MS.gene035891:intron | 50.0% | |
| GACATCGAGCAATCAGGTTC+TGG | - | chr5.2:53317756-53317775 | MS.gene035891:intron | 50.0% | |
| GAGATGGACATCGAGCAATC+AGG | - | chr5.2:53317750-53317769 | MS.gene035891:intron | 50.0% | |
| GAGCATGATGCCGAACTGTT+TGG | - | chr5.2:53317557-53317576 | MS.gene035891:intron | 50.0% | |
| GATCTTGGGTCATCGGAATG+AGG | - | chr5.2:53316981-53317000 | MS.gene035891:intron | 50.0% | |
| GTCCTTCACGCAGTTACTAC+AGG | - | chr5.2:53316709-53316728 | MS.gene035891:intron | 50.0% | |
| GTTCAACGTCATCGGAGACA+GGG | + | chr5.2:53316423-53316442 | None:intergenic | 50.0% | |
| TCCCTGTAGTAACTGCGTGA+AGG | + | chr5.2:53316714-53316733 | None:intergenic | 50.0% | |
| TCTTGATCGGGCCATTGTCA+AGG | - | chr5.2:53318625-53318644 | MS.gene035891:intron | 50.0% | |
| TGAAGGAGCTCTTACAAGGG+TGG | - | chr5.2:53318535-53318554 | MS.gene035891:intron | 50.0% | |
| TGACAATGGCCCGATCAAGA+GGG | + | chr5.2:53318625-53318644 | None:intergenic | 50.0% | |
| TGTTCAACGTCATCGGAGAC+AGG | + | chr5.2:53316424-53316443 | None:intergenic | 50.0% | |
| TTCAACGTCATCGGAGACAG+GGG | + | chr5.2:53316422-53316441 | None:intergenic | 50.0% | |
| TTGACAATGGCCCGATCAAG+AGG | + | chr5.2:53318626-53318645 | None:intergenic | 50.0% | |
| ! | ATCGAGCAATCAGGTTCTGG+TGG | - | chr5.2:53317759-53317778 | MS.gene035891:intron | 50.0% |
| ! | GCTGGTTCATCTTTGGACAC+TGG | - | chr5.2:53317684-53317703 | MS.gene035891:intron | 50.0% |
| ! | GTAGGTTGGGGAACGAATGA+AGG | - | chr5.2:53316946-53316965 | MS.gene035891:CDS | 50.0% |
| !! | AGTGCTTGGTTTTTCCCGAG+AGG | - | chr5.2:53318465-53318484 | MS.gene035891:intron | 50.0% |
| !! | CAGCTCCGCAAAGCATTTTC+AGG | - | chr5.2:53316442-53316461 | MS.gene035891:CDS | 50.0% |
| AGACAGGGGGAAGAGGATGA+GGG | + | chr5.2:53316408-53316427 | None:intergenic | 55.0% | |
| AGGAGCTCTTACAAGGGTGG+TGG | - | chr5.2:53318538-53318557 | MS.gene035891:intron | 55.0% | |
| CACAACGGGAGACTTCCGTA+AGG | - | chr5.2:53317879-53317898 | MS.gene035891:intron | 55.0% | |
| CGTGAGGCTATCAACAAGCG+AGG | - | chr5.2:53318506-53318525 | MS.gene035891:intron | 55.0% | |
| GCCATTGTCAAGGACACCAC+TGG | - | chr5.2:53318635-53318654 | MS.gene035891:CDS | 55.0% | |
| GCGGAGCTGTTCAACGTCAT+CGG | + | chr5.2:53316431-53316450 | None:intergenic | 55.0% | |
| GGACGCAGTTACTGATCTCG+AGG | + | chr5.2:53316693-53316712 | None:intergenic | 55.0% | |
| TACGGAAGTCTCCCGTTGTG+TGG | + | chr5.2:53317879-53317898 | None:intergenic | 55.0% | |
| TCAACGTCATCGGAGACAGG+GGG | + | chr5.2:53316421-53316440 | None:intergenic | 55.0% | |
| GAGACAGGGGGAAGAGGATG+AGG | + | chr5.2:53316409-53316428 | None:intergenic | 60.0% | |
| TCATCGGAGACAGGGGGAAG+AGG | + | chr5.2:53316415-53316434 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 53316388 | 53318706 | 53316388 | ID=MS.gene035891 |
| chr5.2 | mRNA | 53316388 | 53318706 | 53316388 | ID=MS.gene035891.t1;Parent=MS.gene035891 |
| chr5.2 | exon | 53318631 | 53318706 | 53318631 | ID=MS.gene035891.t1.exon1;Parent=MS.gene035891.t1 |
| chr5.2 | CDS | 53318631 | 53318706 | 53318631 | ID=cds.MS.gene035891.t1;Parent=MS.gene035891.t1 |
| chr5.2 | exon | 53317999 | 53318144 | 53317999 | ID=MS.gene035891.t1.exon2;Parent=MS.gene035891.t1 |
| chr5.2 | CDS | 53317999 | 53318144 | 53317999 | ID=cds.MS.gene035891.t1;Parent=MS.gene035891.t1 |
| chr5.2 | exon | 53317194 | 53317412 | 53317194 | ID=MS.gene035891.t1.exon3;Parent=MS.gene035891.t1 |
| chr5.2 | CDS | 53317194 | 53317412 | 53317194 | ID=cds.MS.gene035891.t1;Parent=MS.gene035891.t1 |
| chr5.2 | exon | 53316772 | 53316984 | 53316772 | ID=MS.gene035891.t1.exon4;Parent=MS.gene035891.t1 |
| chr5.2 | CDS | 53316772 | 53316984 | 53316772 | ID=cds.MS.gene035891.t1;Parent=MS.gene035891.t1 |
| chr5.2 | exon | 53316388 | 53316684 | 53316388 | ID=MS.gene035891.t1.exon5;Parent=MS.gene035891.t1 |
| chr5.2 | CDS | 53316388 | 53316684 | 53316388 | ID=cds.MS.gene035891.t1;Parent=MS.gene035891.t1 |
| Gene Sequence |
| Protein sequence |
