Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89484.t1 | XP_003615096.1 | 98.4 | 316 | 5 | 0 | 1 | 316 | 1 | 316 | 1.30E-172 | 615.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89484.t1 | Q9SYT0 | 70.3 | 317 | 93 | 1 | 1 | 316 | 1 | 317 | 2.3e-125 | 449.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89484.t1 | G7KB73 | 98.4 | 316 | 5 | 0 | 1 | 316 | 1 | 316 | 9.7e-173 | 615.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene93736 | MS.gene89484 | PPI |
| MS.gene036493 | MS.gene89484 | PPI |
| MS.gene57291 | MS.gene89484 | PPI |
| MS.gene74945 | MS.gene89484 | PPI |
| MS.gene041553 | MS.gene89484 | PPI |
| MS.gene026445 | MS.gene89484 | PPI |
| MS.gene89484 | MS.gene87117 | PPI |
| MS.gene061777 | MS.gene89484 | PPI |
| MS.gene047030 | MS.gene89484 | PPI |
| MS.gene89484 | MS.gene040097 | PPI |
| MS.gene058336 | MS.gene89484 | PPI |
| MS.gene030809 | MS.gene89484 | PPI |
| MS.gene056195 | MS.gene89484 | PPI |
| MS.gene065031 | MS.gene89484 | PPI |
| MS.gene76197 | MS.gene89484 | PPI |
| MS.gene040887 | MS.gene89484 | PPI |
| MS.gene85401 | MS.gene89484 | PPI |
| MS.gene45772 | MS.gene89484 | PPI |
| MS.gene55897 | MS.gene89484 | PPI |
| MS.gene016642 | MS.gene89484 | PPI |
| MS.gene89484 | MS.gene27444 | PPI |
| MS.gene89484 | MS.gene67887 | PPI |
| MS.gene28077 | MS.gene89484 | PPI |
| MS.gene029299 | MS.gene89484 | PPI |
| MS.gene00058 | MS.gene89484 | PPI |
| MS.gene047020 | MS.gene89484 | PPI |
| MS.gene89484 | MS.gene067369 | PPI |
| MS.gene035327 | MS.gene89484 | PPI |
| MS.gene89484 | MS.gene92405 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89484.t1 | MTR_5g063670 | 98.418 | 316 | 5 | 0 | 1 | 316 | 1 | 316 | 0.0 | 638 |
| MS.gene89484.t1 | MTR_0276s0050 | 66.349 | 315 | 106 | 0 | 1 | 315 | 1 | 315 | 9.24e-150 | 423 |
| MS.gene89484.t1 | MTR_8g038220 | 48.254 | 315 | 162 | 1 | 1 | 315 | 1 | 314 | 1.98e-99 | 295 |
| MS.gene89484.t1 | MTR_2g031980 | 44.904 | 314 | 172 | 1 | 1 | 314 | 1 | 313 | 8.63e-99 | 293 |
| MS.gene89484.t1 | MTR_8g038220 | 47.937 | 315 | 162 | 1 | 1 | 315 | 1 | 313 | 1.04e-98 | 293 |
| MS.gene89484.t1 | MTR_3g018780 | 46.032 | 315 | 169 | 1 | 1 | 315 | 1 | 314 | 2.25e-98 | 293 |
| MS.gene89484.t1 | MTR_8g038210 | 46.984 | 315 | 165 | 2 | 1 | 315 | 1 | 313 | 1.76e-97 | 290 |
| MS.gene89484.t1 | MTR_3g018790 | 46.032 | 315 | 169 | 1 | 1 | 315 | 1 | 314 | 1.77e-96 | 288 |
| MS.gene89484.t1 | MTR_8g038210 | 46.032 | 315 | 168 | 2 | 1 | 315 | 1 | 313 | 4.36e-94 | 281 |
| MS.gene89484.t1 | MTR_8g038180 | 46.474 | 312 | 166 | 1 | 1 | 312 | 1 | 311 | 1.32e-91 | 275 |
| MS.gene89484.t1 | MTR_8g038150 | 42.857 | 315 | 177 | 1 | 1 | 312 | 1 | 315 | 5.78e-82 | 251 |
| MS.gene89484.t1 | MTR_8g107640 | 37.460 | 315 | 191 | 6 | 1 | 312 | 1 | 312 | 2.33e-68 | 216 |
| MS.gene89484.t1 | MTR_3g018790 | 43.802 | 242 | 136 | 0 | 74 | 315 | 19 | 260 | 1.01e-67 | 213 |
| MS.gene89484.t1 | MTR_1g033560 | 35.556 | 315 | 201 | 2 | 1 | 314 | 1 | 314 | 6.08e-65 | 207 |
| MS.gene89484.t1 | MTR_6g071605 | 35.625 | 320 | 196 | 5 | 1 | 315 | 1 | 315 | 1.27e-63 | 204 |
| MS.gene89484.t1 | MTR_6g071615 | 37.188 | 320 | 191 | 5 | 1 | 315 | 1 | 315 | 2.43e-63 | 203 |
| MS.gene89484.t1 | MTR_8g038170 | 38.291 | 316 | 170 | 5 | 14 | 312 | 4 | 311 | 1.31e-61 | 199 |
| MS.gene89484.t1 | MTR_8g038170 | 38.291 | 316 | 170 | 5 | 14 | 312 | 4 | 311 | 1.31e-61 | 199 |
| MS.gene89484.t1 | MTR_1g112520 | 35.962 | 317 | 193 | 5 | 1 | 312 | 1 | 312 | 3.18e-61 | 197 |
| MS.gene89484.t1 | MTR_6g071595 | 34.768 | 302 | 189 | 3 | 15 | 312 | 15 | 312 | 3.53e-55 | 182 |
| MS.gene89484.t1 | MTR_3g018920 | 44.340 | 212 | 85 | 2 | 1 | 212 | 1 | 179 | 2.61e-52 | 170 |
| MS.gene89484.t1 | MTR_6g071595 | 33.750 | 240 | 151 | 3 | 15 | 250 | 15 | 250 | 2.50e-39 | 139 |
| MS.gene89484.t1 | MTR_6g028030 | 28.364 | 275 | 189 | 4 | 44 | 310 | 33 | 307 | 1.20e-28 | 112 |
| MS.gene89484.t1 | MTR_3g018925 | 38.542 | 96 | 59 | 0 | 220 | 315 | 14 | 109 | 3.36e-18 | 79.0 |
| MS.gene89484.t1 | MTR_8g038090 | 39.080 | 87 | 51 | 2 | 228 | 312 | 4 | 90 | 6.83e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89484.t1 | AT1G35720 | 70.347 | 317 | 93 | 1 | 1 | 316 | 1 | 317 | 1.62e-165 | 463 |
| MS.gene89484.t1 | AT5G65020 | 64.669 | 317 | 111 | 1 | 1 | 316 | 1 | 317 | 9.80e-154 | 433 |
| MS.gene89484.t1 | AT5G10230 | 64.873 | 316 | 111 | 0 | 1 | 316 | 1 | 316 | 2.32e-153 | 432 |
| MS.gene89484.t1 | AT5G10220 | 63.208 | 318 | 115 | 1 | 1 | 316 | 1 | 318 | 2.56e-149 | 422 |
| MS.gene89484.t1 | AT5G65020 | 65.188 | 293 | 101 | 1 | 25 | 316 | 10 | 302 | 6.53e-143 | 405 |
| MS.gene89484.t1 | AT5G12380 | 50.479 | 313 | 154 | 1 | 1 | 313 | 1 | 312 | 2.22e-111 | 326 |
| MS.gene89484.t1 | AT2G38760 | 39.937 | 318 | 185 | 2 | 1 | 312 | 1 | 318 | 2.30e-75 | 234 |
| MS.gene89484.t1 | AT1G68090 | 33.227 | 313 | 208 | 1 | 1 | 312 | 1 | 313 | 6.40e-62 | 199 |
| MS.gene89484.t1 | AT2G38750 | 35.625 | 320 | 180 | 7 | 16 | 315 | 6 | 319 | 4.09e-49 | 166 |
| MS.gene89484.t1 | AT2G38750 | 35.831 | 307 | 174 | 6 | 26 | 315 | 2 | 302 | 9.38e-49 | 165 |
| MS.gene89484.t1 | AT1G68090 | 30.800 | 250 | 172 | 1 | 1 | 249 | 1 | 250 | 5.20e-43 | 149 |
Find 64 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCAGAGGCTGGTTCATCTT+TGG | 0.249553 | 5.4:-49545735 | MS.gene89484:intron |
| TAAAGACAGGTACTCATCTT+TGG | 0.267452 | 5.4:+49544979 | None:intergenic |
| AAGAACTAACCAGAGGTAAT+AGG | 0.379410 | 5.4:+49545293 | None:intergenic |
| AGACCTGATTATATCGATCT+TGG | 0.387687 | 5.4:-49546441 | MS.gene89484:CDS |
| GACATCGAGCAATCAGGTTC+TGG | 0.389191 | 5.4:-49545656 | MS.gene89484:CDS |
| TGACTATGAGAAAATGCTTC+TGG | 0.397100 | 5.4:-49544747 | MS.gene89484:CDS |
| TCTTGATCGGGCCATTGTTA+AGG | 0.398136 | 5.4:-49544780 | MS.gene89484:CDS |
| CGATATAATCAGGTCTTCAT+TGG | 0.399238 | 5.4:+49546448 | None:intergenic |
| AAAGACAGGTACTCATCTTT+GGG | 0.422404 | 5.4:+49544980 | None:intergenic |
| TCTAATCTAATTACCTGAAA+AGG | 0.431051 | 5.4:+49546893 | None:intergenic |
| ACTGGTAAGCTCTTTGTTCA+AGG | 0.435992 | 5.4:+49546343 | None:intergenic |
| TGTCTAGCTCCTATTACCTC+TGG | 0.443776 | 5.4:-49545302 | MS.gene89484:intron |
| GACCCAAGATCGATATAATC+AGG | 0.450317 | 5.4:+49546438 | None:intergenic |
| AATCACTACAAGGATGCATT+CGG | 0.471381 | 5.4:-49545121 | MS.gene89484:CDS |
| ATCTTTGCAAAGTACCTCTC+GGG | 0.480871 | 5.4:+49544926 | None:intergenic |
| GACCTGATTATATCGATCTT+GGG | 0.488649 | 5.4:-49546440 | MS.gene89484:CDS |
| CTGATGAAGGAGCTCTTACA+AGG | 0.491225 | 5.4:-49544874 | MS.gene89484:CDS |
| ATAACGACGACGATTTCATC+AGG | 0.493456 | 5.4:-49545186 | MS.gene89484:CDS |
| GAGACAGGAGGAAGAGGATG+AGG | 0.502593 | 5.4:+49546942 | None:intergenic |
| GATGTTGCTTACCACACAAC+GGG | 0.503228 | 5.4:-49545547 | MS.gene89484:CDS |
| GAACAGTATCCCTCTTGATC+GGG | 0.508421 | 5.4:-49544792 | MS.gene89484:CDS |
| AATTACCTGAAAAGGCTTTG+CGG | 0.508841 | 5.4:+49546901 | None:intergenic |
| GCGGAGCTGTTCAACGTCAT+CGG | 0.510390 | 5.4:+49546920 | None:intergenic |
| TATCTTTGCAAAGTACCTCT+CGG | 0.510736 | 5.4:+49544925 | None:intergenic |
| TTATGACGAAGATCTCATAA+AGG | 0.516097 | 5.4:-49546366 | MS.gene89484:CDS |
| TGTTCAACGTCATCGGAGAC+AGG | 0.520924 | 5.4:+49546927 | None:intergenic |
| AATAAGCGAGGAACTGATGA+AGG | 0.526839 | 5.4:-49544887 | MS.gene89484:CDS |
| GGAACAGTATCCCTCTTGAT+CGG | 0.527186 | 5.4:-49544793 | MS.gene89484:CDS |
| TTATATCGATCTTGGGTCAT+CGG | 0.529420 | 5.4:-49546433 | MS.gene89484:CDS |
| TCATCGGAGACAGGAGGAAG+AGG | 0.530983 | 5.4:+49546936 | None:intergenic |
| AAGATGGACATCGAGCAATC+AGG | 0.535668 | 5.4:-49545662 | MS.gene89484:CDS |
| AAGATCGACTGTCAAGTGCT+TGG | 0.553730 | 5.4:-49544954 | MS.gene89484:CDS |
| CAAACGAGGCAACTAAAAGA+TGG | 0.559422 | 5.4:-49545678 | MS.gene89484:CDS |
| CAGTCGATCTTAGTAAAGAC+AGG | 0.564428 | 5.4:+49544966 | None:intergenic |
| TGCTACTTTGAATCACTACA+AGG | 0.568307 | 5.4:-49545131 | MS.gene89484:CDS |
| TTAACTGACCTCAAAATCAC+TGG | 0.572067 | 5.4:+49546325 | None:intergenic |
| ATCGAGCAATCAGGTTCTGG+TGG | 0.577409 | 5.4:-49545653 | MS.gene89484:CDS |
| GTCATCGGAATGAGGTTCAA+AGG | 0.585027 | 5.4:-49546418 | MS.gene89484:CDS |
| TTAACAATGGCCCGATCAAG+AGG | 0.585716 | 5.4:+49544782 | None:intergenic |
| TTATAGCTGAGGAGTATCAA+AGG | 0.599060 | 5.4:-49544817 | MS.gene89484:CDS |
| AGGAGCTCTTACAAGGGTGG+TGG | 0.601483 | 5.4:-49544867 | MS.gene89484:CDS |
| GGTTAGTTCTTACCGCTACG+AGG | 0.606344 | 5.4:-49545281 | MS.gene89484:CDS |
| GATCTTGGGTCATCGGAATG+AGG | 0.611347 | 5.4:-49546426 | MS.gene89484:CDS |
| TCGGAATGAGGTTCAAAGGA+AGG | 0.612348 | 5.4:-49546414 | MS.gene89484:CDS |
| GCCATTGTTAAGGACACCAC+CGG | 0.617637 | 5.4:-49544770 | MS.gene89484:CDS |
| ACCGGTGGTGTCCTTAACAA+TGG | 0.621128 | 5.4:+49544769 | None:intergenic |
| AGACAGGAGGAAGAGGATGA+GGG | 0.623354 | 5.4:+49546943 | None:intergenic |
| TACGGAAGTCTCCCGTTGTG+TGG | 0.624082 | 5.4:+49545536 | None:intergenic |
| TGATCTGAAAATTATAGCTG+AGG | 0.638238 | 5.4:-49544828 | MS.gene89484:CDS |
| GTTAGTTCTTACCGCTACGA+GGG | 0.642496 | 5.4:-49545280 | MS.gene89484:CDS |
| CTTTGCAAAGATAATTCGTG+AGG | 0.652367 | 5.4:-49544915 | MS.gene89484:CDS |
| TAACAATGGCCCGATCAAGA+GGG | 0.665692 | 5.4:+49544783 | None:intergenic |
| TGAAGGAGCTCTTACAAGGG+TGG | 0.668685 | 5.4:-49544870 | MS.gene89484:CDS |
| TGATGAAGGAGCTCTTACAA+GGG | 0.669212 | 5.4:-49544873 | MS.gene89484:CDS |
| CGTGAGGCTATCAATAAGCG+AGG | 0.670658 | 5.4:-49544899 | MS.gene89484:CDS |
| TCAACGTCATCGGAGACAGG+AGG | 0.672591 | 5.4:+49546930 | None:intergenic |
| AGGATGAGGGACGCTCAATG+TGG | 0.681434 | 5.4:+49546956 | None:intergenic |
| AGATGTTGCTTACCACACAA+CGG | 0.692993 | 5.4:-49545548 | MS.gene89484:CDS |
| TGACTTCATCTCCCTCGTAG+CGG | 0.703189 | 5.4:+49545269 | None:intergenic |
| CACAACGGGAGACTTCCGTA+AGG | 0.704750 | 5.4:-49545533 | MS.gene89484:intron |
| CTTGACTATAGCAAAAGCTG+AGG | 0.708809 | 5.4:-49545245 | MS.gene89484:CDS |
| ATTCGGAAAAGATATAAACA+AGG | 0.714446 | 5.4:-49545104 | MS.gene89484:intron |
| TAGCTGAGGAGTATCAAAGG+AGG | 0.718780 | 5.4:-49544814 | MS.gene89484:CDS |
| TAGCGGTAAGAACTAACCAG+AGG | 0.741450 | 5.4:+49545286 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTCAAAATTAGTTTATTT+TGG | - | chr5.4:49546355-49546374 | MS.gene89484:CDS | 10.0% |
| !! | ATAAATCAAAATTGATAAAC+CGG | + | chr5.4:49545196-49545215 | None:intergenic | 15.0% |
| !! | GTAAAACAAAAATATGAATA+TGG | + | chr5.4:49544855-49544874 | None:intergenic | 15.0% |
| !! | ATTTGGATTTCAGATTTAAA+TGG | - | chr5.4:49545393-49545412 | MS.gene89484:intron | 20.0% |
| !! | TAAAGATCTTCAAAATAACA+AGG | + | chr5.4:49545058-49545077 | None:intergenic | 20.0% |
| !!! | AAAAGATGTTATGTTGATTA+AGG | - | chr5.4:49545800-49545819 | MS.gene89484:intron | 20.0% |
| !!! | AAAGATGTTATGTTGATTAA+GGG | - | chr5.4:49545801-49545820 | MS.gene89484:intron | 20.0% |
| !!! | AAATCTGAAATCCAAATTAA+GGG | + | chr5.4:49545390-49545409 | None:intergenic | 20.0% |
| !!! | ATTAAGTTGTTTATCCAAAA+AGG | + | chr5.4:49545426-49545445 | None:intergenic | 20.0% |
| !!! | CAATTTTGATTTATGATTGT+AGG | - | chr5.4:49545202-49545221 | MS.gene89484:CDS | 20.0% |
| !!! | GAATAATGTGTATCATTTTT+TGG | - | chr5.4:49545886-49545905 | MS.gene89484:intron | 20.0% |
| !!! | TAAATCTGAAATCCAAATTA+AGG | + | chr5.4:49545391-49545410 | None:intergenic | 20.0% |
| !!! | TAATCAACATAACATCTTTT+TGG | + | chr5.4:49545800-49545819 | None:intergenic | 20.0% |
| !!! | TCAATTTTTTTTTGCAAAGA+AGG | - | chr5.4:49546076-49546095 | MS.gene89484:intron | 20.0% |
| !!! | TTTTCATATAAGCTATAAGA+TGG | - | chr5.4:49545491-49545510 | MS.gene89484:intron | 20.0% |
| ! | ATCACATTTAACCATAAACA+TGG | + | chr5.4:49545155-49545174 | None:intergenic | 25.0% |
| ! | ATTCGGAAAAGATATAAACA+AGG | - | chr5.4:49546577-49546596 | MS.gene89484:intron | 25.0% |
| ! | GATTTCAGATTTAAATGGAT+TGG | - | chr5.4:49545398-49545417 | MS.gene89484:intron | 25.0% |
| ! | TCTAATCTAATTACCTGAAA+AGG | + | chr5.4:49544791-49544810 | None:intergenic | 25.0% |
| ! | TTGATTTATGATTGTAGGTT+GGG | - | chr5.4:49545207-49545226 | MS.gene89484:CDS | 25.0% |
| ! | TTTGTATTTAGACTAAATGC+AGG | - | chr5.4:49546263-49546282 | MS.gene89484:intron | 25.0% |
| !! | AAATGTGATTTAACTTTGGT+TGG | - | chr5.4:49545166-49545185 | MS.gene89484:CDS | 25.0% |
| !! | AAGATGTTATGTTGATTAAG+GGG | - | chr5.4:49545802-49545821 | MS.gene89484:intron | 25.0% |
| !! | ATTGGCTCAAAAAATTAACA+CGG | + | chr5.4:49546659-49546678 | None:intergenic | 25.0% |
| !! | GGTTAAATGTGATTTAACTT+TGG | - | chr5.4:49545162-49545181 | MS.gene89484:CDS | 25.0% |
| !! | TTGCTTTGTAAGTTATTTCA+TGG | - | chr5.4:49544875-49544894 | MS.gene89484:CDS | 25.0% |
| !! | TTTGATTTATGATTGTAGGT+TGG | - | chr5.4:49545206-49545225 | MS.gene89484:CDS | 25.0% |
| !!! | ATGTATTGCTTTTTTGTGTT+TGG | - | chr5.4:49545082-49545101 | MS.gene89484:intron | 25.0% |
| !!! | TGTATTGCTTTTTTGTGTTT+GGG | - | chr5.4:49545083-49545102 | MS.gene89484:intron | 25.0% |
| AAGTATATACAGATACATCC+TGG | + | chr5.4:49545688-49545707 | None:intergenic | 30.0% | |
| AATAAGCTGAAAACAGCTTA+TGG | - | chr5.4:49545544-49545563 | MS.gene89484:CDS | 30.0% | |
| AGAACTAAGAACCATGTTTA+TGG | - | chr5.4:49545141-49545160 | MS.gene89484:CDS | 30.0% | |
| ATACACATTATTCTTGTTGC+AGG | + | chr5.4:49545879-49545898 | None:intergenic | 30.0% | |
| CAAAATCAAATCAACGATCA+AGG | + | chr5.4:49544995-49545014 | None:intergenic | 30.0% | |
| CTGATTAAAACCTGACTTTA+GGG | - | chr5.4:49545774-49545793 | MS.gene89484:intron | 30.0% | |
| TCAAATGAACAAATCCAAAC+AGG | - | chr5.4:49545628-49545647 | MS.gene89484:CDS | 30.0% | |
| TCTGATTAAAACCTGACTTT+AGG | - | chr5.4:49545773-49545792 | MS.gene89484:intron | 30.0% | |
| TGAAATCCAAATTAAGGGTT+TGG | + | chr5.4:49545385-49545404 | None:intergenic | 30.0% | |
| TGATCTGAAAATTATAGCTG+AGG | - | chr5.4:49546853-49546872 | MS.gene89484:intron | 30.0% | |
| TGATTTATGATTGTAGGTTG+GGG | - | chr5.4:49545208-49545227 | MS.gene89484:CDS | 30.0% | |
| TTATGACGAAGATCTCATAA+AGG | - | chr5.4:49545315-49545334 | MS.gene89484:intron | 30.0% | |
| ! | AAAATGCTTCTGGCAATTTT+AGG | - | chr5.4:49546944-49546963 | MS.gene89484:CDS | 30.0% |
| ! | ACAAGGAAAAGCATAATGAT+TGG | + | chr5.4:49545041-49545060 | None:intergenic | 30.0% |
| ! | AGATGTTATGTTGATTAAGG+GGG | - | chr5.4:49545803-49545822 | MS.gene89484:intron | 30.0% |
| ! | TTGAATTTTCTCTTCATCAG+AGG | - | chr5.4:49545931-49545950 | MS.gene89484:intron | 30.0% |
| !! | AGTCAGGTTTTAATCAGAAT+TGG | + | chr5.4:49545771-49545790 | None:intergenic | 30.0% |
| !! | ATTTGTGACACTTTGAGTTT+TGG | - | chr5.4:49545727-49545746 | MS.gene89484:CDS | 30.0% |
| !! | GTCAGGTTTTAATCAGAATT+GGG | + | chr5.4:49545770-49545789 | None:intergenic | 30.0% |
| !!! | ATTTTTTGAGCCAATGTTGT+AGG | - | chr5.4:49546664-49546683 | MS.gene89484:intron | 30.0% |
| !!! | TAAATGGATTGGATCCTTTT+TGG | - | chr5.4:49545409-49545428 | MS.gene89484:intron | 30.0% |
| AAAGACAGGTACTCATCTTT+GGG | + | chr5.4:49546704-49546723 | None:intergenic | 35.0% | |
| AAGAACTAACCAGAGGTAAT+AGG | + | chr5.4:49546391-49546410 | None:intergenic | 35.0% | |
| AAGTTATCCTGGAAAGCTTA+TGG | - | chr5.4:49545520-49545539 | MS.gene89484:intron | 35.0% | |
| AATCACTACAAGGATGCATT+CGG | - | chr5.4:49546560-49546579 | MS.gene89484:intron | 35.0% | |
| AATCAGTCAGTAGTACCTTA+CGG | + | chr5.4:49546166-49546185 | None:intergenic | 35.0% | |
| AATTACCTGAAAAGGCTTTG+CGG | + | chr5.4:49544783-49544802 | None:intergenic | 35.0% | |
| AGACCTGATTATATCGATCT+TGG | - | chr5.4:49545240-49545259 | MS.gene89484:CDS | 35.0% | |
| ATCGTCGGATCTCAAATTAA+TGG | + | chr5.4:49544941-49544960 | None:intergenic | 35.0% | |
| CGATATAATCAGGTCTTCAT+TGG | + | chr5.4:49545236-49545255 | None:intergenic | 35.0% | |
| CTATTGCGTATATCTGATCT+TGG | - | chr5.4:49546235-49546254 | MS.gene89484:intron | 35.0% | |
| CTTATTTCCATAAGCTTTCC+AGG | + | chr5.4:49545530-49545549 | None:intergenic | 35.0% | |
| CTTTGCAAAGATAATTCGTG+AGG | - | chr5.4:49546766-49546785 | MS.gene89484:intron | 35.0% | |
| GACCTGATTATATCGATCTT+GGG | - | chr5.4:49545241-49545260 | MS.gene89484:CDS | 35.0% | |
| GATGGTTTCTTAAGTTATCC+TGG | - | chr5.4:49545509-49545528 | MS.gene89484:intron | 35.0% | |
| GGATCTCAAATTAATGGTCT+CGG | + | chr5.4:49544935-49544954 | None:intergenic | 35.0% | |
| GTTGTCAATACCAAACAGTT+TGG | + | chr5.4:49545839-49545858 | None:intergenic | 35.0% | |
| TAAAGACAGGTACTCATCTT+TGG | + | chr5.4:49546705-49546724 | None:intergenic | 35.0% | |
| TAACTAGCAAGTTTATGCAC+AGG | + | chr5.4:49546189-49546208 | None:intergenic | 35.0% | |
| TCATGTGTAATCTGAATCGT+CGG | + | chr5.4:49544956-49544975 | None:intergenic | 35.0% | |
| TCGAATTATGGAATCTCACT+CGG | - | chr5.4:49545653-49545672 | MS.gene89484:CDS | 35.0% | |
| TCTTTCAGATCCTACAACAT+TGG | + | chr5.4:49546677-49546696 | None:intergenic | 35.0% | |
| TGACTATGAGAAAATGCTTC+TGG | - | chr5.4:49546934-49546953 | MS.gene89484:CDS | 35.0% | |
| TTAACTGACCTCAAAATCAC+TGG | + | chr5.4:49545359-49545378 | None:intergenic | 35.0% | |
| TTATATCGATCTTGGGTCAT+CGG | - | chr5.4:49545248-49545267 | MS.gene89484:CDS | 35.0% | |
| ! | AAGCATTTTCTCATAGTCAC+CGG | + | chr5.4:49546933-49546952 | None:intergenic | 35.0% |
| ! | GATGTTATGTTGATTAAGGG+GGG | - | chr5.4:49545804-49545823 | MS.gene89484:intron | 35.0% |
| ! | TATCTTTGCAAAGTACCTCT+CGG | + | chr5.4:49546759-49546778 | None:intergenic | 35.0% |
| ! | TGTGTTTGGGATTGAAGATT+CGG | - | chr5.4:49545096-49545115 | MS.gene89484:intron | 35.0% |
| !! | TGCTACTTTGAATCACTACA+AGG | - | chr5.4:49546550-49546569 | MS.gene89484:intron | 35.0% |
| !! | TTATAGCTGAGGAGTATCAA+AGG | - | chr5.4:49546864-49546883 | MS.gene89484:intron | 35.0% |
| !! | TTTAACTTTGGTTGGCTTTC+CGG | - | chr5.4:49545174-49545193 | MS.gene89484:CDS | 35.0% |
| !!! | AGTGATTTTGAGGTCAGTTA+AGG | - | chr5.4:49545358-49545377 | MS.gene89484:intron | 35.0% |
| !!! | GTGATTTTGAGGTCAGTTAA+GGG | - | chr5.4:49545359-49545378 | MS.gene89484:intron | 35.0% |
| !!! | TCATCAGGATTTTAGCTACA+AGG | - | chr5.4:49546510-49546529 | MS.gene89484:intron | 35.0% |
| AATAAGCGAGGAACTGATGA+AGG | - | chr5.4:49546794-49546813 | MS.gene89484:intron | 40.0% | |
| AATTATGGAATCTCACTCGG+TGG | - | chr5.4:49545656-49545675 | MS.gene89484:CDS | 40.0% | |
| ACTGGTAAGCTCTTTGTTCA+AGG | + | chr5.4:49545341-49545360 | None:intergenic | 40.0% | |
| ATAACGACGACGATTTCATC+AGG | - | chr5.4:49546495-49546514 | MS.gene89484:intron | 40.0% | |
| CAAACGAGGCAACTAAAAGA+TGG | - | chr5.4:49546003-49546022 | MS.gene89484:intron | 40.0% | |
| CAGTCGATCTTAGTAAAGAC+AGG | + | chr5.4:49546718-49546737 | None:intergenic | 40.0% | |
| CTTGACTATAGCAAAAGCTG+AGG | - | chr5.4:49546436-49546455 | MS.gene89484:CDS | 40.0% | |
| GACCCAAGATCGATATAATC+AGG | + | chr5.4:49545246-49545265 | None:intergenic | 40.0% | |
| TAAGGGCCAAACCCTTAATT+TGG | - | chr5.4:49545376-49545395 | MS.gene89484:intron | 40.0% | |
| TCCAAACAGGCTTCGAATTA+TGG | - | chr5.4:49545641-49545660 | MS.gene89484:CDS | 40.0% | |
| TCCATAATTCGAAGCCTGTT+TGG | + | chr5.4:49545645-49545664 | None:intergenic | 40.0% | |
| TGATGAAGGAGCTCTTACAA+GGG | - | chr5.4:49546808-49546827 | MS.gene89484:intron | 40.0% | |
| ! | AGAGCTTACCAGTGATTTTG+AGG | - | chr5.4:49545348-49545367 | MS.gene89484:intron | 40.0% |
| ! | AGATGTTGCTTACCACACAA+CGG | - | chr5.4:49546133-49546152 | MS.gene89484:intron | 40.0% |
| ! | ATCTTTGCAAAGTACCTCTC+GGG | + | chr5.4:49546758-49546777 | None:intergenic | 40.0% |
| ! | ATTTTCTCTTCATCAGAGGC+TGG | - | chr5.4:49545935-49545954 | MS.gene89484:intron | 40.0% |
| !! | ATCTTTTTGGCCCTAAAGTC+AGG | + | chr5.4:49545787-49545806 | None:intergenic | 40.0% |
| AAGATCGACTGTCAAGTGCT+TGG | - | chr5.4:49546727-49546746 | MS.gene89484:intron | 45.0% | |
| AAGATGGACATCGAGCAATC+AGG | - | chr5.4:49546019-49546038 | MS.gene89484:intron | 45.0% | |
| CAAAAATGCATCGCGTTCAG+CGG | + | chr5.4:49545982-49546001 | None:intergenic | 45.0% | |
| CTGATGAAGGAGCTCTTACA+AGG | - | chr5.4:49546807-49546826 | MS.gene89484:intron | 45.0% | |
| GAACAGTATCCCTCTTGATC+GGG | - | chr5.4:49546889-49546908 | MS.gene89484:intron | 45.0% | |
| GGAACAGTATCCCTCTTGAT+CGG | - | chr5.4:49546888-49546907 | MS.gene89484:intron | 45.0% | |
| GTCATCGGAATGAGGTTCAA+AGG | - | chr5.4:49545263-49545282 | MS.gene89484:CDS | 45.0% | |
| TAACAATGGCCCGATCAAGA+GGG | + | chr5.4:49546901-49546920 | None:intergenic | 45.0% | |
| TAGCGGTAAGAACTAACCAG+AGG | + | chr5.4:49546398-49546417 | None:intergenic | 45.0% | |
| TCGGAATGAGGTTCAAAGGA+AGG | - | chr5.4:49545267-49545286 | MS.gene89484:CDS | 45.0% | |
| TCTTGATCGGGCCATTGTTA+AGG | - | chr5.4:49546901-49546920 | MS.gene89484:intron | 45.0% | |
| TTAACAATGGCCCGATCAAG+AGG | + | chr5.4:49546902-49546921 | None:intergenic | 45.0% | |
| ! | ATCAGAGGCTGGTTCATCTT+TGG | - | chr5.4:49545946-49545965 | MS.gene89484:intron | 45.0% |
| ! | CATTTTCTCATAGTCACCGG+TGG | + | chr5.4:49546930-49546949 | None:intergenic | 45.0% |
| ! | GATGTTGCTTACCACACAAC+GGG | - | chr5.4:49546134-49546153 | MS.gene89484:intron | 45.0% |
| ! | GTTAGTTCTTACCGCTACGA+GGG | - | chr5.4:49546401-49546420 | MS.gene89484:CDS | 45.0% |
| ! | TGTCTAGCTCCTATTACCTC+TGG | - | chr5.4:49546379-49546398 | MS.gene89484:CDS | 45.0% |
| !! | TAGCTGAGGAGTATCAAAGG+AGG | - | chr5.4:49546867-49546886 | MS.gene89484:intron | 45.0% |
| !!! | CGATGCATTTTTGGCAAACG+AGG | - | chr5.4:49545989-49546008 | MS.gene89484:intron | 45.0% |
| ACCGGTGGTGTCCTTAACAA+TGG | + | chr5.4:49546915-49546934 | None:intergenic | 50.0% | |
| AGACAGGAGGAAGAGGATGA+GGG | + | chr5.4:49544741-49544760 | None:intergenic | 50.0% | |
| CGTGAGGCTATCAATAAGCG+AGG | - | chr5.4:49546782-49546801 | MS.gene89484:intron | 50.0% | |
| GACATCGAGCAATCAGGTTC+TGG | - | chr5.4:49546025-49546044 | MS.gene89484:intron | 50.0% | |
| GAGCGTGATGCCAAACTGTT+TGG | - | chr5.4:49545826-49545845 | MS.gene89484:intron | 50.0% | |
| GATCTTGGGTCATCGGAATG+AGG | - | chr5.4:49545255-49545274 | MS.gene89484:CDS | 50.0% | |
| GCCATTGTTAAGGACACCAC+CGG | - | chr5.4:49546911-49546930 | MS.gene89484:CDS | 50.0% | |
| TGAAGGAGCTCTTACAAGGG+TGG | - | chr5.4:49546811-49546830 | MS.gene89484:intron | 50.0% | |
| TGACTTCATCTCCCTCGTAG+CGG | + | chr5.4:49546415-49546434 | None:intergenic | 50.0% | |
| TGTTCAACGTCATCGGAGAC+AGG | + | chr5.4:49544757-49544776 | None:intergenic | 50.0% | |
| ! | ATCGAGCAATCAGGTTCTGG+TGG | - | chr5.4:49546028-49546047 | MS.gene89484:intron | 50.0% |
| ! | CGCTGAACGCGATGCATTTT+TGG | - | chr5.4:49545980-49545999 | MS.gene89484:intron | 50.0% |
| ! | GGTTAGTTCTTACCGCTACG+AGG | - | chr5.4:49546400-49546419 | MS.gene89484:CDS | 50.0% |
| !! | AGTGCTTGGTTTTTCCCGAG+AGG | - | chr5.4:49546741-49546760 | MS.gene89484:intron | 50.0% |
| AGGAGCTCTTACAAGGGTGG+TGG | - | chr5.4:49546814-49546833 | MS.gene89484:intron | 55.0% | |
| AGGATGAGGGACGCTCAATG+TGG | + | chr5.4:49544728-49544747 | None:intergenic | 55.0% | |
| CACAACGGGAGACTTCCGTA+AGG | - | chr5.4:49546148-49546167 | MS.gene89484:intron | 55.0% | |
| GAGACAGGAGGAAGAGGATG+AGG | + | chr5.4:49544742-49544761 | None:intergenic | 55.0% | |
| GCGGAGCTGTTCAACGTCAT+CGG | + | chr5.4:49544764-49544783 | None:intergenic | 55.0% | |
| TACGGAAGTCTCCCGTTGTG+TGG | + | chr5.4:49546148-49546167 | None:intergenic | 55.0% | |
| TCAACGTCATCGGAGACAGG+AGG | + | chr5.4:49544754-49544773 | None:intergenic | 55.0% | |
| TCATCGGAGACAGGAGGAAG+AGG | + | chr5.4:49544748-49544767 | None:intergenic | 55.0% | |
| ! | CAGCTCCGCAAAGCCTTTTC+AGG | - | chr5.4:49544775-49544794 | MS.gene89484:CDS | 55.0% |
| ! | CTCACTCGGTGGTAGACTCC+AGG | - | chr5.4:49545667-49545686 | MS.gene89484:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 49544721 | 49546982 | 49544721 | ID=MS.gene89484 |
| chr5.4 | mRNA | 49544721 | 49546982 | 49544721 | ID=MS.gene89484.t1;Parent=MS.gene89484 |
| chr5.4 | exon | 49546907 | 49546982 | 49546907 | ID=MS.gene89484.t1.exon1;Parent=MS.gene89484.t1 |
| chr5.4 | CDS | 49546907 | 49546982 | 49546907 | ID=cds.MS.gene89484.t1;Parent=MS.gene89484.t1 |
| chr5.4 | exon | 49546334 | 49546479 | 49546334 | ID=MS.gene89484.t1.exon2;Parent=MS.gene89484.t1 |
| chr5.4 | CDS | 49546334 | 49546479 | 49546334 | ID=cds.MS.gene89484.t1;Parent=MS.gene89484.t1 |
| chr5.4 | exon | 49545534 | 49545752 | 49545534 | ID=MS.gene89484.t1.exon3;Parent=MS.gene89484.t1 |
| chr5.4 | CDS | 49545534 | 49545752 | 49545534 | ID=cds.MS.gene89484.t1;Parent=MS.gene89484.t1 |
| chr5.4 | exon | 49545105 | 49545317 | 49545105 | ID=MS.gene89484.t1.exon4;Parent=MS.gene89484.t1 |
| chr5.4 | CDS | 49545105 | 49545317 | 49545105 | ID=cds.MS.gene89484.t1;Parent=MS.gene89484.t1 |
| chr5.4 | exon | 49544721 | 49545017 | 49544721 | ID=MS.gene89484.t1.exon5;Parent=MS.gene89484.t1 |
| chr5.4 | CDS | 49544721 | 49545017 | 49544721 | ID=cds.MS.gene89484.t1;Parent=MS.gene89484.t1 |
| Gene Sequence |
| Protein sequence |
