Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene030183.t1 | XP_003609906.1 | 97.4 | 194 | 5 | 0 | 8 | 201 | 14 | 207 | 2.70E-102 | 381.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene030183.t1 | P93045 | 77.8 | 194 | 43 | 0 | 8 | 201 | 14 | 207 | 8.0e-87 | 321.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene030183.t1 | G7JR36 | 97.4 | 194 | 5 | 0 | 8 | 201 | 14 | 207 | 2.0e-102 | 381.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene030183 | MS.gene34372 | PPI |
MS.gene81099 | MS.gene030183 | PPI |
MS.gene071366 | MS.gene030183 | PPI |
MS.gene030183 | MS.gene011927 | PPI |
MS.gene070946 | MS.gene030183 | PPI |
MS.gene030183 | MS.gene46303 | PPI |
MS.gene030183 | MS.gene76352 | PPI |
MS.gene071364 | MS.gene030183 | PPI |
MS.gene030183 | MS.gene043821 | PPI |
MS.gene030183 | MS.gene001031 | PPI |
MS.gene020313 | MS.gene030183 | PPI |
MS.gene49473 | MS.gene030183 | PPI |
MS.gene21834 | MS.gene030183 | PPI |
MS.gene030183 | MS.gene95803 | PPI |
MS.gene04820 | MS.gene030183 | PPI |
MS.gene043818 | MS.gene030183 | PPI |
MS.gene024860 | MS.gene030183 | PPI |
MS.gene28495 | MS.gene030183 | PPI |
MS.gene030183 | MS.gene77163 | PPI |
MS.gene77160 | MS.gene030183 | PPI |
MS.gene030183 | MS.gene018762 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene030183.t1 | MTR_4g124260 | 97.423 | 194 | 5 | 0 | 8 | 201 | 14 | 207 | 6.99e-139 | 387 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene030183.t1 | AT3G17590 | 77.835 | 194 | 43 | 0 | 8 | 201 | 16 | 209 | 1.92e-116 | 331 |
MS.gene030183.t1 | AT3G17590 | 77.835 | 194 | 43 | 0 | 8 | 201 | 14 | 207 | 3.06e-115 | 328 |
MS.gene030183.t1 | AT3G17590 | 71.649 | 194 | 42 | 1 | 8 | 201 | 14 | 194 | 1.39e-101 | 293 |
Find 45 sgRNAs with CRISPR-Local
Find 132 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTGGACTTGGTCAAGCTATT+TGG | 0.270286 | 8.2:+9915256 | MS.gene030183:CDS |
AAGGTTCTTGCAAACTCTTC+AGG | 0.281000 | 8.2:-9914618 | None:intergenic |
GCCTTCACTTGGAACCCTTC+TGG | 0.293675 | 8.2:+9913045 | MS.gene030183:CDS |
AACACTACAATCTCAGAATC+AGG | 0.412173 | 8.2:-9913170 | None:intergenic |
AGAAGAGAAATGTACTTGAA+TGG | 0.412442 | 8.2:-9913255 | None:intergenic |
GAGAGAGAGGCAGACCTTGA+TGG | 0.438619 | 8.2:-9913439 | None:intergenic |
GGGCTGACTTCTTTCCAGTC+AGG | 0.438902 | 8.2:+9915093 | MS.gene030183:CDS |
ATACATATCTTGACCGTCAT+AGG | 0.457986 | 8.2:-9913397 | None:intergenic |
GTATTAAATCTAGTGTTGTT+CGG | 0.462848 | 8.2:+9915278 | MS.gene030183:CDS |
AGGCGCTGTAGCAGTGGACT+TGG | 0.473348 | 8.2:+9915243 | MS.gene030183:CDS |
ATTTCAATGTCGAGTCGAAT+GGG | 0.476706 | 8.2:-9913000 | None:intergenic |
TGAGCAATTTGAGTAACAAA+AGG | 0.480272 | 8.2:-9913230 | None:intergenic |
GATTTCAATGTCGAGTCGAA+TGG | 0.493002 | 8.2:-9913001 | None:intergenic |
GACGGTCAAGATATGTATGC+TGG | 0.501652 | 8.2:+9913402 | MS.gene030183:CDS |
TGTAAATCATACGCTTGTAA+AGG | 0.524144 | 8.2:+9914448 | MS.gene030183:CDS |
GGCATTGAGGATCCTGAGGT+TGG | 0.528970 | 8.2:+9914654 | MS.gene030183:CDS |
AGAGAGAGGCAGACCTTGAT+GGG | 0.529112 | 8.2:-9913438 | None:intergenic |
GAAAGCAGATTAAGCAAGAA+GGG | 0.529838 | 8.2:+9915062 | MS.gene030183:CDS |
CTGCAGAGACATGGGCATTG+AGG | 0.530287 | 8.2:+9914641 | MS.gene030183:CDS |
AGAAAGCAGATTAAGCAAGA+AGG | 0.537341 | 8.2:+9915061 | MS.gene030183:CDS |
AAGAACCTTCTGCAGAGACA+TGG | 0.540639 | 8.2:+9914632 | MS.gene030183:CDS |
CTGATGGCAAAGGCAATAGC+TGG | 0.540724 | 8.2:-9914832 | None:intergenic |
CTCGTAAAGCTGTTCTCTGA+TGG | 0.544456 | 8.2:-9914848 | None:intergenic |
GCAATTTGAGTAACAAAAGG+TGG | 0.545843 | 8.2:-9913227 | None:intergenic |
TAAAGGAGGCGCTGTAGCAG+TGG | 0.556137 | 8.2:+9915237 | MS.gene030183:CDS |
ACCAGAAGGGTTCCAAGTGA+AGG | 0.556476 | 8.2:-9913046 | None:intergenic |
GATACAAGGATGCCTTCACT+TGG | 0.562726 | 8.2:+9913034 | MS.gene030183:CDS |
AGAGAAGATTGTTCCCATCA+AGG | 0.563391 | 8.2:+9913425 | MS.gene030183:CDS |
GCTGAATTTCGATCCTATGA+CGG | 0.564430 | 8.2:+9913384 | MS.gene030183:CDS |
AATGCCCATGTCTCTGCAGA+AGG | 0.565956 | 8.2:-9914637 | None:intergenic |
GATATACTTACTCCAACCTC+AGG | 0.574479 | 8.2:-9914666 | None:intergenic |
TCAGATTGTAGTTCAGAGTG+TGG | 0.590053 | 8.2:+9915028 | MS.gene030183:intron |
AGAACCTTCTGCAGAGACAT+GGG | 0.593998 | 8.2:+9914633 | MS.gene030183:CDS |
CAAAACACACAGGCCAACCT+CGG | 0.612239 | 8.2:+9912966 | MS.gene030183:CDS |
TAAGCAAGAAGGGTCGTCGA+GGG | 0.614091 | 8.2:+9915072 | MS.gene030183:CDS |
ATTTGAGTAACAAAAGGTGG+AGG | 0.622715 | 8.2:-9913224 | None:intergenic |
AATCGACGGTCATAGATACA+AGG | 0.627696 | 8.2:+9913020 | MS.gene030183:CDS |
CATGGGCATTGAGGATCCTG+AGG | 0.640210 | 8.2:+9914650 | MS.gene030183:CDS |
CATCAGAGAACAGCTTTACG+AGG | 0.641355 | 8.2:+9914849 | MS.gene030183:CDS |
TCATCTGTTGACAGTAAAGG+AGG | 0.644374 | 8.2:+9915223 | MS.gene030183:intron |
TTAAGCAAGAAGGGTCGTCG+AGG | 0.656519 | 8.2:+9915071 | MS.gene030183:CDS |
AAGCAAGAAGGGTCGTCGAG+GGG | 0.658726 | 8.2:+9915073 | MS.gene030183:CDS |
AAGCTGTTCTCTGATGGCAA+AGG | 0.669799 | 8.2:-9914842 | None:intergenic |
CGACTCGACATTGAAATCGA+CGG | 0.674810 | 8.2:+9913006 | MS.gene030183:CDS |
TAACGATAAACAAAACACAC+AGG | 0.675072 | 8.2:+9912956 | MS.gene030183:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TATATATATATATATATATA+TGG | + | chr8.2:9914916-9914935 | MS.gene030183:intron | 0.0% |
!! | ACACATTTATATAAAAAAAA+TGG | - | chr8.2:9914085-9914104 | None:intergenic | 10.0% |
!! | ATTAAAAAACTATATAAGAA+TGG | - | chr8.2:9913104-9913123 | None:intergenic | 10.0% |
!! | ATTAATTTATTATTAGCAAT+AGG | - | chr8.2:9914694-9914713 | None:intergenic | 10.0% |
!! | TATTATTAATTAATTTCACT+TGG | + | chr8.2:9913076-9913095 | MS.gene030183:intron | 10.0% |
!! | TTATAAAAAAAAAAAACCTA+TGG | - | chr8.2:9913635-9913654 | None:intergenic | 10.0% |
!!! | TAATTTTGAATACATTTATT+TGG | - | chr8.2:9914157-9914176 | None:intergenic | 10.0% |
!! | AATAATAAAAAAATACCAGA+AGG | - | chr8.2:9913063-9913082 | None:intergenic | 15.0% |
!! | ATAATAAAAAAATACCAGAA+GGG | - | chr8.2:9913062-9913081 | None:intergenic | 15.0% |
!! | AATTTATTATTAGCAATAGG+TGG | - | chr8.2:9914691-9914710 | None:intergenic | 20.0% |
!! | AATTTCAAAGTCCATAATAA+TGG | - | chr8.2:9914748-9914767 | None:intergenic | 20.0% |
!! | ATTGATCATTGAAAAGAAAA+GGG | - | chr8.2:9913968-9913987 | None:intergenic | 20.0% |
!! | ATTTCAAAGTCCATAATAAT+GGG | - | chr8.2:9914747-9914766 | None:intergenic | 20.0% |
!! | GTATGTTTCAAATTTCAAAA+AGG | - | chr8.2:9914784-9914803 | None:intergenic | 20.0% |
!! | TATGTTATAAGCTACTATAT+TGG | + | chr8.2:9913569-9913588 | MS.gene030183:intron | 20.0% |
!!! | AGAGTGTAAATTAGTTTTAA+AGG | - | chr8.2:9913924-9913943 | None:intergenic | 20.0% |
!!! | AGTGTATTTTTTACAATTAG+AGG | + | chr8.2:9914309-9914328 | MS.gene030183:intron | 20.0% |
!!! | ATAATTTTCAATGTCATTGA+TGG | - | chr8.2:9914192-9914211 | None:intergenic | 20.0% |
!!! | GAAAATTATACACATGTTTT+TGG | + | chr8.2:9914203-9914222 | MS.gene030183:intron | 20.0% |
!!! | GAGTGTAAATTAGTTTTAAA+GGG | - | chr8.2:9913923-9913942 | None:intergenic | 20.0% |
! | AAAAACAAGTCAATCCAAAT+GGG | - | chr8.2:9913707-9913726 | None:intergenic | 25.0% |
! | ATGAAAATGAATTAAGACGA+TGG | - | chr8.2:9915006-9915025 | None:intergenic | 25.0% |
! | ATTGGTCATTGAAAAGAAAA+GGG | - | chr8.2:9914009-9914028 | None:intergenic | 25.0% |
! | CATTGATCATTGAAAAGAAA+AGG | - | chr8.2:9913969-9913988 | None:intergenic | 25.0% |
! | TCAAATTAGTCAATCCAAAA+AGG | + | chr8.2:9913880-9913899 | MS.gene030183:intron | 25.0% |
! | TGTAATAGTACCCATTATTA+TGG | + | chr8.2:9914734-9914753 | MS.gene030183:intron | 25.0% |
! | TGTATTCAAAATTACGTACT+TGG | + | chr8.2:9914163-9914182 | MS.gene030183:intron | 25.0% |
! | TTTATCATATCAACTGAACT+AGG | - | chr8.2:9915137-9915156 | None:intergenic | 25.0% |
!! | TGTAAAGGACCAATTTTTAT+GGG | + | chr8.2:9914463-9914482 | MS.gene030183:CDS | 25.0% |
!! | TTGTAAAGGACCAATTTTTA+TGG | + | chr8.2:9914462-9914481 | MS.gene030183:CDS | 25.0% |
!!! | AACAGTTTTGTAAGTGTTTA+TGG | + | chr8.2:9913664-9913683 | MS.gene030183:intron | 25.0% |
!!! | ATACACATGTTTTTGGAAAT+TGG | + | chr8.2:9914210-9914229 | MS.gene030183:intron | 25.0% |
!!! | ATTGGAAGACTTGTTTTAAA+AGG | + | chr8.2:9914228-9914247 | MS.gene030183:intron | 25.0% |
!!! | ATTTTTTACAATTAGAGGAG+AGG | + | chr8.2:9914314-9914333 | MS.gene030183:intron | 25.0% |
!!! | TTTTTGAGCTTATGAAAAGT+AGG | + | chr8.2:9913722-9913741 | MS.gene030183:intron | 25.0% |
AAAGGGATGATAAGAATCTA+TGG | - | chr8.2:9913906-9913925 | None:intergenic | 30.0% | |
AAGGTTCGTTTACATCATAA+TGG | + | chr8.2:9914247-9914266 | MS.gene030183:intron | 30.0% | |
ACAATTTATGAACATGCCAT+AGG | + | chr8.2:9913616-9913635 | MS.gene030183:intron | 30.0% | |
AGAAGAGAAATGTACTTGAA+TGG | - | chr8.2:9913258-9913277 | None:intergenic | 30.0% | |
CAAAAACAAGTCAATCCAAA+TGG | - | chr8.2:9913708-9913727 | None:intergenic | 30.0% | |
CATAATTCATAAGGTTGTCA+AGG | - | chr8.2:9913833-9913852 | None:intergenic | 30.0% | |
CATTGGTCATTGAAAAGAAA+AGG | - | chr8.2:9914010-9914029 | None:intergenic | 30.0% | |
CCAATCATATAATACAATGC+CGG | - | chr8.2:9914502-9914521 | None:intergenic | 30.0% | |
CTACTATATTGGAGAACTTA+TGG | + | chr8.2:9913580-9913599 | MS.gene030183:intron | 30.0% | |
GATGATCAATTCATGTTTGT+TGG | + | chr8.2:9913335-9913354 | MS.gene030183:intron | 30.0% | |
GCAATCTTACCCATAAAAAT+TGG | - | chr8.2:9914475-9914494 | None:intergenic | 30.0% | |
TAACGATAAACAAAACACAC+AGG | + | chr8.2:9912956-9912975 | MS.gene030183:CDS | 30.0% | |
TGAGCAATTTGAGTAACAAA+AGG | - | chr8.2:9913233-9913252 | None:intergenic | 30.0% | |
TGGGTACTATTACAAATTCA+AGG | - | chr8.2:9914728-9914747 | None:intergenic | 30.0% | |
TGTAAATCATACGCTTGTAA+AGG | + | chr8.2:9914448-9914467 | MS.gene030183:CDS | 30.0% | |
! | AACAACGAGATTTTGTCAAT+AGG | - | chr8.2:9914405-9914424 | None:intergenic | 30.0% |
! | ATAAGAATCTATGGCCTTTT+TGG | - | chr8.2:9913897-9913916 | None:intergenic | 30.0% |
! | ATATAAGGTGTTTATGGAAC+AGG | - | chr8.2:9913499-9913518 | None:intergenic | 30.0% |
! | GCTTTTACGCATAATTCATA+AGG | - | chr8.2:9913842-9913861 | None:intergenic | 30.0% |
! | GTCTACATTTGTTAAATTCC+AGG | + | chr8.2:9914572-9914591 | MS.gene030183:intron | 30.0% |
AACACTACAATCTCAGAATC+AGG | - | chr8.2:9913173-9913192 | None:intergenic | 35.0% | |
AAGTGTATGAAAAACCTGAC+TGG | - | chr8.2:9915110-9915129 | None:intergenic | 35.0% | |
ACACTTACAAAACTGTTCAG+AGG | - | chr8.2:9913661-9913680 | None:intergenic | 35.0% | |
AGAAAGCAGATTAAGCAAGA+AGG | + | chr8.2:9915061-9915080 | MS.gene030183:CDS | 35.0% | |
AGCACATTTCATTTCTCTAC+GGG | + | chr8.2:9914280-9914299 | MS.gene030183:intron | 35.0% | |
ATACATATCTTGACCGTCAT+AGG | - | chr8.2:9913400-9913419 | None:intergenic | 35.0% | |
ATCATTGAAAAGAAAAGGGC+AGG | - | chr8.2:9913964-9913983 | None:intergenic | 35.0% | |
ATGTTCCTTGGATTGAACTA+GGG | + | chr8.2:9913469-9913488 | MS.gene030183:intron | 35.0% | |
ATTTCAATGTCGAGTCGAAT+GGG | - | chr8.2:9913003-9913022 | None:intergenic | 35.0% | |
ATTTGAGTAACAAAAGGTGG+AGG | - | chr8.2:9913227-9913246 | None:intergenic | 35.0% | |
CAAATGTAGACACATACATG+AGG | - | chr8.2:9914563-9914582 | None:intergenic | 35.0% | |
CAGCACATTTCATTTCTCTA+CGG | + | chr8.2:9914279-9914298 | MS.gene030183:intron | 35.0% | |
CCGGCATTGTATTATATGAT+TGG | + | chr8.2:9914499-9914518 | MS.gene030183:intron | 35.0% | |
CTATCATCTGTTGACAGTAA+AGG | + | chr8.2:9915220-9915239 | MS.gene030183:intron | 35.0% | |
GAAAGCAGATTAAGCAAGAA+GGG | + | chr8.2:9915062-9915081 | MS.gene030183:CDS | 35.0% | |
GAACATAAAAAGAGAGAGAG+AGG | - | chr8.2:9913455-9913474 | None:intergenic | 35.0% | |
GCAATTTGAGTAACAAAAGG+TGG | - | chr8.2:9913230-9913249 | None:intergenic | 35.0% | |
GTCGCTTGTAATCATATCAT+TGG | - | chr8.2:9914027-9914046 | None:intergenic | 35.0% | |
TACGAGGTCATTCATTCTAT+TGG | + | chr8.2:9914865-9914884 | MS.gene030183:intron | 35.0% | |
TATCAAAGTTGTTCAAGTCC+TGG | - | chr8.2:9914593-9914612 | None:intergenic | 35.0% | |
TATCCATGAGCGCTTATATA+AGG | - | chr8.2:9913514-9913533 | None:intergenic | 35.0% | |
TATGTTCCTTGGATTGAACT+AGG | + | chr8.2:9913468-9913487 | MS.gene030183:intron | 35.0% | |
! | CTCTCTCTTTTTATGTTCCT+TGG | + | chr8.2:9913457-9913476 | MS.gene030183:intron | 35.0% |
! | GCGCTTATATAAGGTGTTTA+TGG | - | chr8.2:9913505-9913524 | None:intergenic | 35.0% |
! | GTTTTGTAAGTGTTTATGGC+TGG | + | chr8.2:9913668-9913687 | MS.gene030183:intron | 35.0% |
! | TAAGGTTGTCAAGGTACTTA+TGG | - | chr8.2:9913824-9913843 | None:intergenic | 35.0% |
!!! | TGATTTGCTGCACTTTTTGT+TGG | + | chr8.2:9914535-9914554 | MS.gene030183:intron | 35.0% |
AAGGTTCTTGCAAACTCTTC+AGG | - | chr8.2:9914621-9914640 | None:intergenic | 40.0% | |
AATCGACGGTCATAGATACA+AGG | + | chr8.2:9913020-9913039 | MS.gene030183:CDS | 40.0% | |
ACACCTTATATAAGCGCTCA+TGG | + | chr8.2:9913508-9913527 | MS.gene030183:intron | 40.0% | |
AGAGAAGATTGTTCCCATCA+AGG | + | chr8.2:9913425-9913444 | MS.gene030183:CDS | 40.0% | |
GATATACTTACTCCAACCTC+AGG | - | chr8.2:9914669-9914688 | None:intergenic | 40.0% | |
GATTTCAATGTCGAGTCGAA+TGG | - | chr8.2:9913004-9913023 | None:intergenic | 40.0% | |
GCACATTTCATTTCTCTACG+GGG | + | chr8.2:9914281-9914300 | MS.gene030183:intron | 40.0% | |
GCTGAATTTCGATCCTATGA+CGG | + | chr8.2:9913384-9913403 | MS.gene030183:CDS | 40.0% | |
GCTGCAAAACAGTAGCATTT+AGG | - | chr8.2:9914813-9914832 | None:intergenic | 40.0% | |
GTCGTTTAAGCATCTCTCAA+GGG | + | chr8.2:9914340-9914359 | MS.gene030183:intron | 40.0% | |
TCAGATTGTAGTTCAGAGTG+TGG | + | chr8.2:9915028-9915047 | MS.gene030183:intron | 40.0% | |
TCATCTGTTGACAGTAAAGG+AGG | + | chr8.2:9915223-9915242 | MS.gene030183:intron | 40.0% | |
! | TAAGGTGTTTATGGAACAGG+AGG | - | chr8.2:9913496-9913515 | None:intergenic | 40.0% |
! | TCCAAATGGGCCTTATATAC+TGG | - | chr8.2:9913694-9913713 | None:intergenic | 40.0% |
! | TGTCGTTTAAGCATCTCTCA+AGG | + | chr8.2:9914339-9914358 | MS.gene030183:intron | 40.0% |
! | TTATGGCTGGCCAGTATATA+AGG | + | chr8.2:9913681-9913700 | MS.gene030183:intron | 40.0% |
AAAAGGGCAGGCTTCTTTGA+TGG | - | chr8.2:9913952-9913971 | None:intergenic | 45.0% | |
AAAGGGCAGGCTTCTTTGAT+GGG | - | chr8.2:9913951-9913970 | None:intergenic | 45.0% | |
AAGAACCTTCTGCAGAGACA+TGG | + | chr8.2:9914632-9914651 | MS.gene030183:CDS | 45.0% | |
AAGCTGTTCTCTGATGGCAA+AGG | - | chr8.2:9914845-9914864 | None:intergenic | 45.0% | |
AGAACCTTCTGCAGAGACAT+GGG | + | chr8.2:9914633-9914652 | MS.gene030183:CDS | 45.0% | |
CATCAGAGAACAGCTTTACG+AGG | + | chr8.2:9914849-9914868 | MS.gene030183:CDS | 45.0% | |
CGACTCGACATTGAAATCGA+CGG | + | chr8.2:9913006-9913025 | MS.gene030183:CDS | 45.0% | |
CTCGTAAAGCTGTTCTCTGA+TGG | - | chr8.2:9914851-9914870 | None:intergenic | 45.0% | |
GACGGTCAAGATATGTATGC+TGG | + | chr8.2:9913402-9913421 | MS.gene030183:CDS | 45.0% | |
GATACAAGGATGCCTTCACT+TGG | + | chr8.2:9913034-9913053 | MS.gene030183:CDS | 45.0% | |
GCCAGTATATAAGGCCCATT+TGG | + | chr8.2:9913690-9913709 | MS.gene030183:intron | 45.0% | |
TATGGGTAAGATTGCAGCAC+CGG | + | chr8.2:9914480-9914499 | MS.gene030183:intron | 45.0% | |
! | AATGGGTACGAGATTTTCCG+AGG | - | chr8.2:9912986-9913005 | None:intergenic | 45.0% |
! | GTGGACTTGGTCAAGCTATT+TGG | + | chr8.2:9915256-9915275 | MS.gene030183:CDS | 45.0% |
AAGGGCAGGCTTCTTTGATG+GGG | - | chr8.2:9913950-9913969 | None:intergenic | 50.0% | |
AATGCCCATGTCTCTGCAGA+AGG | - | chr8.2:9914640-9914659 | None:intergenic | 50.0% | |
ACCAGAAGGGTTCCAAGTGA+AGG | - | chr8.2:9913049-9913068 | None:intergenic | 50.0% | |
AGAGAGAGGCAGACCTTGAT+GGG | - | chr8.2:9913441-9913460 | None:intergenic | 50.0% | |
CAAAACACACAGGCCAACCT+CGG | + | chr8.2:9912966-9912985 | MS.gene030183:CDS | 50.0% | |
CTGATGGCAAAGGCAATAGC+TGG | - | chr8.2:9914835-9914854 | None:intergenic | 50.0% | |
GAGGACCCTAGTTCAATCCA+AGG | - | chr8.2:9913477-9913496 | None:intergenic | 50.0% | |
TAAGCAAGAAGGGTCGTCGA+GGG | + | chr8.2:9915072-9915091 | MS.gene030183:CDS | 50.0% | |
TTAAGCAAGAAGGGTCGTCG+AGG | + | chr8.2:9915071-9915090 | MS.gene030183:CDS | 50.0% | |
! | GGTACGAGATTTTCCGAGGT+TGG | - | chr8.2:9912982-9913001 | None:intergenic | 50.0% |
AAGCAAGAAGGGTCGTCGAG+GGG | + | chr8.2:9915073-9915092 | MS.gene030183:CDS | 55.0% | |
AGGGCAGGCTTCTTTGATGG+GGG | - | chr8.2:9913949-9913968 | None:intergenic | 55.0% | |
GAGAGAGAGGCAGACCTTGA+TGG | - | chr8.2:9913442-9913461 | None:intergenic | 55.0% | |
GCCTTCACTTGGAACCCTTC+TGG | + | chr8.2:9913045-9913064 | MS.gene030183:CDS | 55.0% | |
! | CTGCAGAGACATGGGCATTG+AGG | + | chr8.2:9914641-9914660 | MS.gene030183:CDS | 55.0% |
! | GGCATTGAGGATCCTGAGGT+TGG | + | chr8.2:9914654-9914673 | MS.gene030183:CDS | 55.0% |
! | GGGCTGACTTCTTTCCAGTC+AGG | + | chr8.2:9915093-9915112 | MS.gene030183:CDS | 55.0% |
!! | CATGGGCATTGAGGATCCTG+AGG | + | chr8.2:9914650-9914669 | MS.gene030183:CDS | 55.0% |
!! | TAAAGGAGGCGCTGTAGCAG+TGG | + | chr8.2:9915237-9915256 | MS.gene030183:CDS | 55.0% |
! | AGGCGCTGTAGCAGTGGACT+TGG | + | chr8.2:9915243-9915262 | MS.gene030183:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.2 | gene | 9912946 | 9915299 | 9912946 | ID=MS.gene030183 |
chr8.2 | mRNA | 9912946 | 9915299 | 9912946 | ID=MS.gene030183.t1;Parent=MS.gene030183 |
chr8.2 | exon | 9912946 | 9913066 | 9912946 | ID=MS.gene030183.t1.exon1;Parent=MS.gene030183.t1 |
chr8.2 | CDS | 9912946 | 9913066 | 9912946 | ID=cds.MS.gene030183.t1;Parent=MS.gene030183.t1 |
chr8.2 | exon | 9913168 | 9913262 | 9913168 | ID=MS.gene030183.t1.exon2;Parent=MS.gene030183.t1 |
chr8.2 | CDS | 9913168 | 9913262 | 9913168 | ID=cds.MS.gene030183.t1;Parent=MS.gene030183.t1 |
chr8.2 | exon | 9913375 | 9913446 | 9913375 | ID=MS.gene030183.t1.exon3;Parent=MS.gene030183.t1 |
chr8.2 | CDS | 9913375 | 9913446 | 9913375 | ID=cds.MS.gene030183.t1;Parent=MS.gene030183.t1 |
chr8.2 | exon | 9914437 | 9914484 | 9914437 | ID=MS.gene030183.t1.exon4;Parent=MS.gene030183.t1 |
chr8.2 | CDS | 9914437 | 9914484 | 9914437 | ID=cds.MS.gene030183.t1;Parent=MS.gene030183.t1 |
chr8.2 | exon | 9914594 | 9914677 | 9914594 | ID=MS.gene030183.t1.exon5;Parent=MS.gene030183.t1 |
chr8.2 | CDS | 9914594 | 9914677 | 9914594 | ID=cds.MS.gene030183.t1;Parent=MS.gene030183.t1 |
chr8.2 | exon | 9914832 | 9914870 | 9914832 | ID=MS.gene030183.t1.exon6;Parent=MS.gene030183.t1 |
chr8.2 | CDS | 9914832 | 9914870 | 9914832 | ID=cds.MS.gene030183.t1;Parent=MS.gene030183.t1 |
chr8.2 | exon | 9915032 | 9915114 | 9915032 | ID=MS.gene030183.t1.exon7;Parent=MS.gene030183.t1 |
chr8.2 | CDS | 9915032 | 9915114 | 9915032 | ID=cds.MS.gene030183.t1;Parent=MS.gene030183.t1 |
chr8.2 | exon | 9915237 | 9915299 | 9915237 | ID=MS.gene030183.t1.exon8;Parent=MS.gene030183.t1 |
chr8.2 | CDS | 9915237 | 9915299 | 9915237 | ID=cds.MS.gene030183.t1;Parent=MS.gene030183.t1 |
Gene Sequence |
Protein sequence |